Query gi|254781037|ref|YP_003065450.1| porphobilinogen deaminase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 307
No_of_seqs 169 out of 2086
Neff 5.8
Searched_HMMs 33803
Date Wed Jun 1 20:46:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781037.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1gtk_A Porphobilinogen deamin 100.0 7E-43 0 297.5 12.3 104 1-106 1-104 (129)
2 >3ecr_A Porphobilinogen deamin 100.0 9.7E-38 2.9E-42 264.2 9.2 104 3-108 21-124 (145)
3 >1gtk_A Porphobilinogen deamin 100.0 1.9E-33 5.6E-38 236.5 7.6 90 106-195 1-90 (90)
4 >3ecr_A Porphobilinogen deamin 100.0 3.7E-33 1.1E-37 234.6 8.0 92 105-196 1-96 (96)
5 >1gtk_A Porphobilinogen deamin 99.9 3.3E-22 9.8E-27 163.7 12.2 85 222-306 1-85 (94)
6 >3ecr_A Porphobilinogen deamin 99.8 1.2E-20 3.4E-25 153.7 11.1 85 222-306 1-114 (123)
7 >3del_B Arginine binding prote 88.0 1.4 4E-05 23.8 5.5 73 105-179 2-77 (100)
8 >3ecr_A Porphobilinogen deamin 87.0 0.42 1.2E-05 27.1 2.5 75 136-219 43-143 (145)
9 >3gxa_A Outer membrane lipopro 81.7 3.8 0.00011 20.9 7.3 90 3-115 22-115 (165)
10 >2rin_A Putative glycine betai 81.5 3.9 0.00011 20.8 7.3 59 2-84 5-63 (180)
11 >2fyi_A HTH-type transcription 77.4 5.2 0.00015 20.0 7.9 110 4-151 14-126 (132)
12 >2hxr_A HTH-type transcription 76.7 5.4 0.00016 19.9 5.3 61 5-88 31-91 (144)
13 >2g29_A Nitrate transport prot 75.4 5.9 0.00017 19.7 8.4 161 66-227 78-269 (381)
14 >1ex2_A Protein MAF; structura 71.1 2 5.8E-05 22.7 1.6 108 122-263 2-119 (189)
15 >1cb6_A Protein (lactoferrin); 70.3 7.7 0.00023 18.9 5.3 89 136-225 25-122 (163)
16 >3fxq_A LYSR type regulator of 66.8 6.7 0.0002 19.3 3.6 174 5-211 2-187 (214)
17 >2p5x_A ASMTL, N-acetylseroton 66.3 3.4 0.0001 21.2 2.0 114 123-255 4-120 (230)
18 >1h45_A Lactoferrin; metal tra 66.0 9.4 0.00028 18.3 4.4 82 137-224 27-113 (172)
19 >3ir1_A Outer membrane lipopro 60.5 12 0.00035 17.7 6.4 89 4-115 1-93 (135)
20 >1h76_A Serotransferrin; iron 59.3 12 0.00036 17.6 4.6 112 3-136 3-125 (338)
21 >3gqv_A Enoyl reductase; mediu 58.7 13 0.00037 17.5 4.3 54 122-175 61-114 (156)
22 >2ql3_A Probable transcription 57.3 13 0.00039 17.4 7.1 80 5-111 6-85 (110)
23 >1p99_A Hypothetical protein P 56.5 14 0.00041 17.3 5.0 88 3-115 38-133 (183)
24 >1ryo_A Serotransferrin; iron 54.7 15 0.00043 17.1 4.2 111 3-136 3-126 (327)
25 >3fzv_A Probable transcription 54.0 15 0.00044 17.0 7.6 59 4-85 7-65 (121)
26 >2o1m_A Probable amino-acid AB 52.7 16 0.00047 16.9 5.4 72 109-181 8-88 (107)
27 >1xt8_A Putative amino-acid tr 52.4 16 0.00047 16.8 6.7 70 109-180 2-75 (89)
28 >2b6d_A Lactotransferrin; comp 51.7 16 0.00048 16.8 4.8 144 4-175 2-176 (345)
29 >1blf_A Lactoferrin; transferr 51.3 16 0.00047 16.9 3.3 78 139-222 28-110 (154)
30 >1r9l_A Glycine betaine-bindin 49.4 18 0.00053 16.5 4.4 60 2-84 6-65 (181)
31 >3gxa_A Outer membrane lipopro 49.2 11 0.00034 17.8 2.3 24 109-132 3-26 (110)
32 >3ir1_A Outer membrane lipopro 49.2 11 0.00034 17.8 2.3 24 109-132 3-26 (110)
33 >1xs5_A 29 kDa protein, membra 48.2 10 0.0003 18.1 1.9 24 109-132 4-27 (111)
34 >1i6a_A OXYR, hydrogen peroxid 47.8 19 0.00055 16.4 7.7 178 4-212 5-191 (219)
35 >2amh_A Septum formation prote 47.0 6.9 0.0002 19.2 0.9 115 124-255 11-130 (207)
36 >3i6v_A Periplasmic His/Glu/Gl 45.7 14 0.00042 17.2 2.3 77 136-218 35-112 (149)
37 >1p99_A Hypothetical protein P 44.8 12 0.00037 17.6 1.9 24 109-132 3-26 (112)
38 >3kbr_A Cyclohexadienyl dehydr 40.6 24 0.00071 15.7 3.8 63 116-179 31-95 (122)
39 >2h9b_A HTH-type transcription 40.4 24 0.00072 15.7 12.0 186 4-221 90-289 (312)
40 >1sw5_A Osmoprotection protein 40.3 24 0.00072 15.6 7.1 59 2-82 4-62 (177)
41 >3g0m_A Cysteine desulfuration 38.4 26 0.00077 15.5 2.8 52 213-264 12-75 (141)
42 >2ekf_A Ancient ubiquitous pro 37.6 27 0.00079 15.4 3.3 33 135-167 17-55 (61)
43 >3hv1_A Polar amino acid ABC u 36.7 28 0.00082 15.3 5.8 70 109-180 2-82 (97)
44 >2zzv_A ABC transporter, solut 36.0 28 0.00084 15.2 11.0 215 4-240 34-298 (361)
45 >1wlo_A SUFE protein; structur 35.8 29 0.00085 15.2 3.7 26 242-267 45-70 (136)
46 >3ec7_A Putative dehydrogenase 35.6 29 0.00085 15.2 3.3 99 1-113 19-118 (149)
47 >3kzg_A Arginine 3RD transport 35.4 29 0.00086 15.2 6.8 70 109-180 6-79 (102)
48 >1xt8_A Putative amino-acid tr 35.3 29 0.00086 15.1 3.1 75 136-219 76-155 (203)
49 >3h7m_A Sensor protein; histid 35.2 29 0.00087 15.1 8.8 184 3-219 10-209 (234)
50 >1ixc_A CBNR, LYSR-type regula 33.2 32 0.00093 14.9 11.2 183 5-220 4-199 (206)
51 >3hhg_A Transcriptional regula 32.9 31 0.00092 14.9 2.4 175 4-211 5-188 (218)
52 >1xs5_A 29 kDa protein, membra 32.4 32 0.00096 14.8 6.6 89 2-115 1-94 (130)
53 >1wdn_A GLNBP, glutamine bindi 31.5 34 0.00099 14.7 6.6 70 108-179 7-81 (103)
54 >3e4r_A Nitrate transport prot 29.8 36 0.0011 14.6 5.0 88 3-114 28-120 (181)
55 >2nxo_A Hypothetical protein S 29.0 37 0.0011 14.5 2.9 50 65-114 42-96 (193)
56 >2d3i_A Ovotransferrin; alumin 29.0 37 0.0011 14.5 3.8 77 141-224 30-111 (157)
57 >2j01_S 50S ribosomal protein 27.9 39 0.0011 14.4 3.6 45 260-304 34-85 (112)
58 >3k4u_A Binding component of A 27.2 40 0.0012 14.3 6.8 63 116-179 31-95 (123)
59 >1iej_A Ovotransferrin; iron, 26.6 41 0.0012 14.2 2.9 66 141-212 30-100 (173)
60 >3gzg_A Molybdate-binding peri 26.5 41 0.0012 14.2 2.4 88 140-229 45-137 (146)
61 >2czl_A Hypothetical protein T 26.0 42 0.0012 14.1 5.0 59 109-172 4-64 (91)
62 >2hpg_A ABC transporter, perip 25.9 42 0.0012 14.1 3.9 176 5-210 10-236 (327)
63 >2iee_A ORF2, probable ABC tra 25.6 42 0.0013 14.1 5.9 62 116-179 31-93 (122)
64 >3hhf_B Transcriptional regula 25.3 43 0.0013 14.0 3.8 175 4-211 7-190 (213)
65 >3fd3_A Chromosome replication 22.8 48 0.0014 13.8 2.4 169 5-211 3-183 (208)
66 >1lst_A Lysine, arginine, orni 22.7 48 0.0014 13.7 5.6 62 116-179 16-80 (100)
67 >2b4l_A Glycine betaine-bindin 22.7 48 0.0014 13.7 5.4 58 3-84 77-134 (159)
68 >1ev7_A Type IIE restriction e 22.7 33 0.00097 14.8 1.0 35 180-214 91-126 (170)
69 >3e4r_A Nitrate transport prot 22.1 49 0.0015 13.7 5.4 71 109-180 5-84 (98)
70 >3h0g_B DNA-directed RNA polym 22.1 40 0.0012 14.3 1.3 13 167-179 37-49 (188)
71 >1k9a_A Carboxyl-terminal SRC 22.0 33 0.00099 14.8 0.9 67 194-260 11-77 (82)
72 >1zbm_A Hypothetical protein A 21.8 50 0.0015 13.6 4.9 57 109-171 4-62 (90)
73 >2i9e_A Triosephosphate isomer 21.0 52 0.0015 13.5 4.6 82 1-84 1-96 (259)
74 >1ii5_A Hypothetical protein S 20.9 52 0.0015 13.5 2.4 18 68-85 57-74 (113)
No 1
>>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} (A:1-103,A:194-219)
Probab=100.00 E-value=7e-43 Score=297.53 Aligned_cols=104 Identities=41% Similarity=0.653 Sum_probs=102.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99882899707988889999999999997408998338999997327411587556748622699999999870983699
Q gi|254781037|r 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA 80 (307)
Q Consensus 1 M~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA 80 (307)
|++++|+||||+|+||++||++|++.|++.| |++++||++|+|+||+++++||+++||||+||||||++|++|++|+|
T Consensus 1 Mm~~~i~IGTR~S~LAl~Qt~~V~~~L~~~~--P~~~~eiv~i~T~GD~~~~~~L~~~ggKGlFtkELe~aLl~g~iDiA 78 (129)
T 1gtk_A 1 MLDNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIA 78 (129)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHHHHHHC--TTCEEEEEECC-----------------CTTHHHHHHHHHTTSCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCCCCCHHHCCCCEEEHHHHHHHHHCCCCCEE
T ss_conf 9988679996885999999999999999758--99718999996327434687577738862543899999871877689
Q ss_pred EECCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 74034321110122101222365683
Q gi|254781037|r 81 VHSAKDMPTKLLKGLQISAYLPREDI 106 (307)
Q Consensus 81 VHSlKDlP~~~~~~l~i~a~~~R~d~ 106 (307)
||||||||+.+|+||.|+|+++|+||
T Consensus 79 VHSlKDlPt~l~~gl~iaAv~~ReD~ 104 (129)
T 1gtk_A 79 VHSMKDVPVEFPQGLGLVTICEREDP 104 (129)
T ss_dssp EEEGGGSCSCCCTTEEEEEECCCCCC
T ss_pred EEECCCCCCHHCCCCEEEECCCCCCC
T ss_conf 84035477221188158502556775
No 2
>>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* (A:1-120,A:217-241)
Probab=100.00 E-value=9.7e-38 Score=264.22 Aligned_cols=104 Identities=39% Similarity=0.552 Sum_probs=100.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974
Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307)
Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307)
.++|+||||+|+||++||++|+++|++++ |+++|||++|+|+||++++.||+++|+||+||||||++|++|++|||||
T Consensus 21 ~~~irIGTR~S~LAl~Qt~~V~~~L~~~~--P~~~~eiv~i~T~GD~~~~~pL~~~ggKGlFtkELe~aLl~g~iDiAVH 98 (145)
T 3ecr_A 21 MRVIRVGTRKSQLARIQTDSVVATLKASY--PGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHALEKNEVDLVVH 98 (145)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHC--TTSEEEEEEC-------------------CCHHHHHHHHHTTSCSEEEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCCCCCHHHCCCCCEEHHHHHHHHHCCCCCEEHH
T ss_conf 73599995899999999999999999758--9971899998546732468737774886123799999997498550034
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCE
Q ss_conf 03432111012210122236568310
Q gi|254781037|r 83 SAKDMPTKLLKGLQISAYLPREDIRD 108 (307)
Q Consensus 83 SlKDlP~~~~~~l~i~a~~~R~d~rD 108 (307)
||||||+++|+||.|+||++||-...
T Consensus 99 SLKDlPt~l~~gl~i~Av~~RE~~~~ 124 (145)
T 3ecr_A 99 SLKDLPTVLPPGFTIGAICKREAVGQ 124 (145)
T ss_dssp EGGGSCSSCCTTEEEEEECCCCCTTT
T ss_pred HHCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 21544300137840212346783431
No 3
>>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} (A:104-193)
Probab=100.00 E-value=1.9e-33 Score=236.46 Aligned_cols=90 Identities=43% Similarity=0.579 Sum_probs=88.8
Q ss_pred CCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCC
Q ss_conf 31056652432433245673220475302888998423773103307679999986378765563014545421621122
Q gi|254781037|r 106 IRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVI 185 (307)
Q Consensus 106 ~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i 185 (307)
||||||+++++++.+||+|++|||||+||++|++++|||++++++||||+|||+||++|+|||||||+|||+|||+++++
T Consensus 1 PrDvlv~~~~~~l~~lp~ga~IGTSS~RR~aql~~~~Pdl~~~~iRGNv~TRl~KL~~g~~daiiLA~Agl~Rlgl~~~i 80 (90)
T 1gtk_A 1 PRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRI 80 (90)
T ss_dssp CCEEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEEECCCSCHHHHHHHHHTTSCSEEEEEHHHHHHTTCGGGC
T ss_pred HHHHHHCCCCCHHHHCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCC
T ss_conf 16666406532042088999654487899999998589974999718899999997568977899604345011232443
Q ss_pred CCCCCHHHCC
Q ss_conf 2336866735
Q gi|254781037|r 186 KEILNIEDFP 195 (307)
Q Consensus 186 ~~~l~~~~~~ 195 (307)
+++|++++|+
T Consensus 81 ~~~l~~~~~l 90 (90)
T 1gtk_A 81 RAALPPEISL 90 (90)
T ss_dssp SEECCTTTSC
T ss_pred EEECCHHHCC
T ss_conf 2651877703
No 4
>>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* (A:121-216)
Probab=100.00 E-value=3.7e-33 Score=234.61 Aligned_cols=92 Identities=36% Similarity=0.497 Sum_probs=88.2
Q ss_pred CCCEEEEECCC---CCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHH-CCCCCEEEEEHHHHHHCC
Q ss_conf 83105665243---24332456732204753028889984237731033076799999863-787655630145454216
Q gi|254781037|r 105 DIRDVFISHTA---QSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLN-NNKAHAILLAYAGIKRLK 180 (307)
Q Consensus 105 d~rD~lv~~~~---~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~-~g~~DaiilA~Agl~RL~ 180 (307)
|||||||++++ +++++||+|++|||||+||++||+++|||++++++||||+|||+||. +|+|||||||+|||+|||
T Consensus 1 DprD~lv~~~~~~~~~l~~Lp~ga~IGTSS~RR~aql~~~~Pdl~~~~iRGNV~TRl~KL~e~g~~DaiiLA~AGl~RLg 80 (96)
T 3ecr_A 1 NPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMG 80 (96)
T ss_dssp CCCEEEEECTTCTTCCTTTSCTTCEEECCCHHHHHHHHHHCTTSEEECCCSCHHHHHHHHHHSSSCSEEEEEHHHHHHTT
T ss_pred CCCCEEEECCCCCHHHHHCCCHHHEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHC
T ss_conf 85666996454202333028633221456642589999867854402555269889998624687138871134676631
Q ss_pred CCCCCCCCCCHHHCCC
Q ss_conf 2112223368667358
Q gi|254781037|r 181 KEKVIKEILNIEDFPP 196 (307)
Q Consensus 181 l~~~i~~~l~~~~~~P 196 (307)
+.++++++|++++|+.
T Consensus 81 l~~~i~~~l~~~~~l~ 96 (96)
T 3ecr_A 81 WHNRVGQILHPEECMY 96 (96)
T ss_dssp CGGGCCEECCTTTCCB
T ss_pred CCCCCCCCCCHHHHHC
T ss_conf 3322211468788523
No 5
>>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} (A:220-313)
Probab=99.88 E-value=3.3e-22 Score=163.66 Aligned_cols=85 Identities=26% Similarity=0.379 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 39788888788999998717764885289999999989999999869987899999843988899999999999997060
Q gi|254781037|r 222 NHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRFISN 301 (307)
Q Consensus 222 nd~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~l~a~v~s~DG~~~i~~~~~g~~~~a~~LG~~la~~Ll~~g~ 301 (307)
||++|+.|+.+||+||+.|+|||++|||+||++++++|+|+++|+++||++.+..+.+++++++.++|.++|++|+++|+
T Consensus 1 nd~~t~~~~~aER~fL~~L~GgC~~PIga~a~~~~~~l~l~~~v~~~dG~~~~~~~~~~~~~~a~~lg~~la~~l~~~Ga 80 (94)
T 1gtk_A 1 NHHETALRVTAERAMNTRLEGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGA 80 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCTTSCEEEEEEEETTEEEEEEEEECTTSSCEEEEEEEECGGGHHHHHHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCH
T ss_conf 69989999999999999847899986589999989999999999989897899999997789999999999999998379
Q ss_pred HHHCC
Q ss_conf 56337
Q gi|254781037|r 302 KNVFN 306 (307)
Q Consensus 302 k~iLn 306 (307)
++||+
T Consensus 81 ~~il~ 85 (94)
T 1gtk_A 81 REILA 85 (94)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 6
>>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* (A:242-364)
Probab=99.85 E-value=1.2e-20 Score=153.67 Aligned_cols=85 Identities=27% Similarity=0.345 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCH-------------------
Q ss_conf 3978888878899999871776488528999999998999999986998789999984398-------------------
Q gi|254781037|r 222 NHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNR------------------- 282 (307)
Q Consensus 222 nd~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~l~a~v~s~DG~~~i~~~~~g~~------------------- 282 (307)
||++|+.|+.+||+||+.|||||++|||+||++++++|+|+++|+++||+++++.+.+++.
T Consensus 1 nd~~T~~~v~aERafL~~L~GGC~~PIGa~a~~~~~~l~l~~~v~s~DG~~~~~~~~~g~~~~~~~~~~~~a~~l~~~g~ 80 (123)
T 3ecr_A 1 HDPETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGI 80 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHHC--CCSSEEEEEEEETTEEEEEEEEECTTSCSEEEEEEEEECCCCCSCCCCCTTCCCBTTB
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 58888999999999999839899884588999989999999999999877124657873024653222333332100011
Q ss_pred ----------HHHHHHHHHHHHHHHHHCCHHHCC
Q ss_conf ----------889999999999999706056337
Q gi|254781037|r 283 ----------CDAINIGRDAAQYIRFISNKNVFN 306 (307)
Q Consensus 283 ----------~~a~~LG~~la~~Ll~~g~k~iLn 306 (307)
.+|+++|.++|++|+.+|+.+||.
T Consensus 81 ~~~~~~~~a~~~Ae~lG~~vA~~Ll~~gA~~il~ 114 (123)
T 3ecr_A 81 TARNIPRGPQLAAQNLGISLANLLLSKGAKNILD 114 (123)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 1122346778899999999999999809999999
No 7
>>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis} (B:96-195)
Probab=88.01 E-value=1.4 Score=23.78 Aligned_cols=73 Identities=10% Similarity=0.058 Sum_probs=56.6
Q ss_pred CCCEEEEECCCC---CCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC
Q ss_conf 831056652432---433245673220475302888998423773103307679999986378765563014545421
Q gi|254781037|r 105 DIRDVFISHTAQ---SLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307)
Q Consensus 105 d~rD~lv~~~~~---~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307)
+..-+++.+++. ++.|| .|.+||+.+-==..++....|+.+++ .-.+.+..+..|.+|++||++.-..-+...
T Consensus 2 ~s~~~i~v~k~~~i~~~~dL-~gk~V~v~~gt~~~~~l~~~~~~~~~-~~~~~~~~~~al~~G~vDa~v~d~~~~~~~ 77 (100)
T 3del_B 2 EIKHLVLVFKGENKHPLPLT-QYRSVAVQTGTYQEAYLQSLSEVHIR-SFDSTLEVLMEVMHGKSPVAVLEPSIAQVV 77 (100)
T ss_dssp EESEEEEEEESCCSCCCCGG-GSSCEEEETTSHHHHHHHHSTTCCEE-EESSHHHHHHHHHTTSSSEEEECHHHHHHH
T ss_pred CCCEEEEEEECCCCCCHHHH-CCCCEEEECCCHHHHHHHHCCCCCCC-CCCCHHHHHHHHCCCCEEEEEECHHHHHHH
T ss_conf 44136886411210103343-24332474786668999864256532-222203432101169667999669999999
No 8
>>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* (A:1-120,A:217-241)
Probab=86.98 E-value=0.42 Score=27.06 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=42.9
Q ss_pred HHHHHHHCCCCCH----HHCCCHH--HHHHH--------------HHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHH--
Q ss_conf 8899842377310----3307679--99998--------------637876556301454542162112223368667--
Q gi|254781037|r 136 ALLLRWRSDISVI----DFRGKIE--TRLNK--------------LNNNKAHAILLAYAGIKRLKKEKVIKEILNIED-- 193 (307)
Q Consensus 136 aql~~~~p~l~~~----~iRGNv~--TRl~K--------------l~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~-- 193 (307)
.+|+..+|++.+. .-+|..+ +.|.+ |.+|+.|-.|-.. .+..++ +++..
T Consensus 43 ~~L~~~~P~~~~eiv~i~T~GD~~~~~pL~~~ggKGlFtkELe~aLl~g~iDiAVHSL--------KDlPt~-l~~gl~i 113 (145)
T 3ecr_A 43 ATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSL--------KDLPTV-LPPGFTI 113 (145)
T ss_dssp HHHHHHCTTSEEEEEEC-------------------CCHHHHHHHHHTTSCSEEEEEG--------GGSCSS-CCTTEEE
T ss_pred HHHHHHCCCCEEEEEEEECCCCCCCCCCHHHCCCCCEEHHHHHHHHHCCCCCEEHHHH--------CCCCCC-CCCCCEE
T ss_conf 9999758997189999854673246873777488612379999999749855003421--------544300-1378402
Q ss_pred --CC--CCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf --35--854320789998527612455677
Q gi|254781037|r 194 --FP--PSPGQGAICIETHVNNPKAQELVK 219 (307)
Q Consensus 194 --~~--PA~gQGaIaIe~r~~d~~i~~il~ 219 (307)
++ -|+||||++||.|.+|..+.+++.
T Consensus 114 ~Av~~RE~~~~~~~~~~~~~~~~~~~~~~~ 143 (145)
T 3ecr_A 114 GAICKREAVGQGALGVEVRAKDQDILDLVG 143 (145)
T ss_dssp EEECCCCCTTTTCEEEEEETTCHHHHHHHH
T ss_pred ECCCCCCCCCCHHEEEEECCCCHHHHHHHH
T ss_conf 123467834311158775158788999987
No 9
>>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis} (A:1-104,A:215-275)
Probab=81.71 E-value=3.8 Score=20.87 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=62.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974
Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307)
Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307)
.++||||.-..+-+..-.......+++. ++++|++.+..-. ...++|.+|++|+++-
T Consensus 22 ~~tI~VG~~~~~~~~~~~~~~k~~~kk~----Gi~Ve~v~f~dy~-------------------~~n~AL~~G~ID~n~~ 78 (165)
T 3gxa_A 22 KKEIVFGTTVGDFGDMVKEQIQPELEKK----GYTVKLVEFTDYV-------------------RPNLALAEGELDINVF 78 (165)
T ss_dssp -CEEEEEEETTHHHHHHHHTHHHHHHTT----TCEEEEEEESSSS-------------------HHHHHHHHTSCSEEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHC----CCEEEEEEECCCH-------------------HHHHHHHCCCCCEEEC
T ss_conf 8539998626976999999999999964----9879999957840-------------------3779987698451551
Q ss_pred CCCC----CCCCCCCCCEEEEECCCCCCCEEEEECCC
Q ss_conf 0343----21110122101222365683105665243
Q gi|254781037|r 83 SAKD----MPTKLLKGLQISAYLPREDIRDVFISHTA 115 (307)
Q Consensus 83 SlKD----lP~~~~~~l~i~a~~~R~d~rD~lv~~~~ 115 (307)
-... .-..-...++..+...-.+..-+++.|..
T Consensus 79 q~~p~l~~~~~~~g~~lv~v~~~~~~py~n~~~~r~~ 115 (165)
T 3gxa_A 79 QHKPYLDDFKKEHNLDITEVFQVPTAAYVNWSAVKTA 115 (165)
T ss_dssp ECHHHHHHHHHHHTCCEEEEEECCBCTTCCEEEEEGG
T ss_pred CCCHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEECC
T ss_conf 5525889999876987699854210465899998151
No 10
>>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A (A:1-88,A:207-298)
Probab=81.48 E-value=3.9 Score=20.82 Aligned_cols=59 Identities=14% Similarity=-0.025 Sum_probs=48.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 98828997079888899999999999974089983389999973274115875567486226999999998709836997
Q gi|254781037|r 2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307)
Q Consensus 2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307)
+.++|+||+-.-.=+.+.++.+...|+.. ++++++++.. +--+-++|-+|++|+..
T Consensus 5 ~~~~I~ig~~~w~~~~~~~~i~~~iLE~~----Gy~V~~~~~~--------------------~~~~~~al~~GdiDv~~ 60 (180)
T 2rin_A 5 SCGTVRFSDVGWTDITATTATATTILEAL----GYETDVKVLS--------------------VPVTYTSLKNKDIDVFL 60 (180)
T ss_dssp CTTEEEEECCSCHHHHHHHHHHHHHHHHH----TCEEEEECCC--------------------HHHHHHHHHHTSCCEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHC----CCCEEEEECC--------------------HHHHHHHHHCCCCEEEE
T ss_conf 38976995079677999999999999986----9924898787--------------------19999999879980985
Q ss_pred ECC
Q ss_conf 403
Q gi|254781037|r 82 HSA 84 (307)
Q Consensus 82 HSl 84 (307)
-.+
T Consensus 61 e~W 63 (180)
T 2rin_A 61 GNW 63 (180)
T ss_dssp EEE
T ss_pred ECC
T ss_conf 045
No 11
>>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding domain, cysteine biosynthesis; 2.80A {Escherichia coli K12} (A:1-88,A:185-228)
Probab=77.44 E-value=5.2 Score=20.01 Aligned_cols=110 Identities=16% Similarity=0.102 Sum_probs=63.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307)
Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307)
..|+||+=.|.-..+=...+.+-.+. +|++++++.... ..++.+.|.+|++|+|+..
T Consensus 14 G~LrIG~~~s~a~~~Lp~~L~~F~~~---~P~I~I~L~~~~--------------------s~~l~~~L~~g~lDlaI~~ 70 (132)
T 2fyi_A 14 GVLTIATTHTQARYSLPEVIKAFREL---FPEVRLELIQGT--------------------PQEIATLLQNGEADIGIAS 70 (132)
T ss_dssp EEEEEEECHHHHHHTHHHHHHHHHHH---CTTEEEEEEECC--------------------HHHHHHHHHHTSCSEEEES
T ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHH---CCCCEEEEEECC--------------------HHHHHHHHHHCCCCEEEEE
T ss_conf 07999976899999999999999998---899789998353--------------------3889988753033235542
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHH---HHHHHHCCCCCHHHC
Q ss_conf 34321110122101222365683105665243243324567322047530288---899842377310330
Q gi|254781037|r 84 AKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKA---LLLRWRSDISVIDFR 151 (307)
Q Consensus 84 lKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~a---ql~~~~p~l~~~~iR 151 (307)
. |...++++..-.+....=.-|+-++--++ ...+ -|.. ++-...|.+.+.+|.
T Consensus 71 ~---~~~~~~~l~~~pL~~e~~~~~~~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 126 (132)
T 2fyi_A 71 E---RLSNDPQLVAFPWFRWHLFDANTVWLGLK-RGQL-----------QRNYVWRFLELCNAGLSVEDIK 126 (132)
T ss_dssp S---SSTTCTTEEEEEEEEECTSCCEEEEEEEE-TTCC-----------BCHHHHHHHHHHCSSSCHHHHH
T ss_pred C---CCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCC-----------CCHHHHHHHHHHHHCCCHHHHH
T ss_conf 0---22221210013323344787508999997-9885-----------7999999999998738989999
No 12
>>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR structural genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli K12} PDB: 3hfu_A (A:1-104,A:199-238)
Probab=76.71 E-value=5.4 Score=19.88 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=28.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403
Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307)
Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307)
+|+||.=.|.-..+-...+...-+. +|++++++.... +.++.+.|.+|++|+++.+.
T Consensus 31 ~LrIg~~~s~~~~~lp~~L~~F~~~---~P~I~i~l~~~~--------------------s~~l~~~L~~g~iDigI~~~ 87 (144)
T 2hxr_A 31 SLRIAVTPTFTSYFIGPLXADFYAR---YPSITLQLQEXS--------------------QEKIEDXLCRDELDVGIAFA 87 (144)
T ss_dssp CEEEEECHHHHTTTHHHHHHHHHHH---CTTSCEEEEECC--------------------HHHHHHHHHTTSCSEEEEES
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCC--------------------CCCCCCCCCCHHHHCCHHHC
T ss_conf 8999832689999999999999996---444432332333--------------------22222223100110001110
Q ss_pred CCCC
Q ss_conf 4321
Q gi|254781037|r 85 KDMP 88 (307)
Q Consensus 85 KDlP 88 (307)
-..+
T Consensus 88 ~~~~ 91 (144)
T 2hxr_A 88 PVHS 91 (144)
T ss_dssp SCCC
T ss_pred CCCC
T ss_conf 1222
No 13
>>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} (A:1-381)
Probab=75.37 E-value=5.9 Score=19.66 Aligned_cols=161 Identities=11% Similarity=0.019 Sum_probs=83.7
Q ss_pred HHHHHHHHCCCCEEEEECCCCCC--------CCCCCCCEEEEECCCCCCCE---------EEEECCC---CCCCCCCCCC
Q ss_conf 99999987098369974034321--------11012210122236568310---------5665243---2433245673
Q gi|254781037|r 66 EEIEKKLISGEIDCAVHSAKDMP--------TKLLKGLQISAYLPREDIRD---------VFISHTA---QSLKDLALHS 125 (307)
Q Consensus 66 kele~aLl~g~iDiAVHSlKDlP--------~~~~~~l~i~a~~~R~d~rD---------~lv~~~~---~~l~~lp~~a 125 (307)
.+.-++|.+|++|+++.+.=.+- ......+.+.+......+.- .++.+.. +++.|| +|-
T Consensus 78 ~~~~~al~~G~~D~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~I~s~~DL-kGK 156 (381)
T 2g29_A 78 DNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILARLNVNGQGIQLGNNYKDLKVGTDAAPLKEAFAKV-TDP 156 (381)
T ss_dssp HHHHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEEEECCBSCEEEEECGGGGGGCCCSCCTTHHHHHHTS-SSC
T ss_pred HHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCHHCHHHH-CCC
T ss_conf 9999886446414485251568999988874479988899975166885899852442101144653200188880-999
Q ss_pred EEECCCC---CHHHH---HHH--HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCC
Q ss_conf 2204753---02888---998--423773103307679999986378765563014545421621122233686673585
Q gi|254781037|r 126 VIGTSSL---RRKAL---LLR--WRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPS 197 (307)
Q Consensus 126 ~IGTsS~---RR~aq---l~~--~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA 197 (307)
+||+.++ -.... ++. +.|+-.+..+-++...-+.-+.+|+.||.++...-...+-........+......+.
T Consensus 157 ~v~~~~~gs~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~al~~g~vda~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 236 (381)
T 2g29_A 157 KVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVVPPAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQALTTGQLWKD 236 (381)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEECCGGGHHHHHHTTSCSEEEEETTHHHHHHHHTSCEEEEEGGGTBTT
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCEEEECHHHHCCC
T ss_conf 89995798508999999999578654543157644807899999713777787054699999963986676134564379
Q ss_pred CCCCEEEEEEE--CCC-CHHHHHHHHHCCHHHH
Q ss_conf 43207899985--276-1245567762397888
Q gi|254781037|r 198 PGQGAICIETH--VNN-PKAQELVKVINHEDTW 227 (307)
Q Consensus 198 ~gQGaIaIe~r--~~d-~~i~~il~~Ind~~T~ 227 (307)
.-+..+..... .++ ..+..++..+.....+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~ 269 (381)
T 2g29_A 237 HPEKAFGMRADWVDQNPKAAKALLMAVMEAQQW 269 (381)
T ss_dssp CBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 852699964999976779999999999999999
No 14
>>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} (A:)
Probab=71.09 E-value=2 Score=22.73 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=55.9
Q ss_pred CCCCEEECCCCCHHHHHHHHHCCCCCHH-------HCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHC
Q ss_conf 5673220475302888998423773103-------307679999986378765563014545421621122233686673
Q gi|254781037|r 122 ALHSVIGTSSLRRKALLLRWRSDISVID-------FRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDF 194 (307)
Q Consensus 122 p~~a~IGTsS~RR~aql~~~~p~l~~~~-------iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~ 194 (307)
++.-++|++||||+..|..+.-++.+.+ +++.=...+ ++..|-.+- ..+...++.
T Consensus 2 ~~~iILaS~Sp~R~~lL~~~g~~f~v~~~~idE~~~~~~~p~~~-----------~~~lA~~KA----~~v~~~~~~--- 63 (189)
T 1ex2_A 2 TKPLILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEEN-----------VQWLAKQKA----KAVADLHPH--- 63 (189)
T ss_dssp CCCEEECCCCHHHHHHHHTTCCCCEECCCCCCCCCCTTSCHHHH-----------HHHHHHHHH----HHHHHHCTT---
T ss_pred CCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHH-----------HHHHHHHHH----HHHHHHCCC---
T ss_conf 99999957999999999977998199679989899987998999-----------999999999----999967899---
Q ss_pred CCCCCCCEEEEEEE---CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf 58543207899985---2761245567762397888887889999987177648852899999999899999
Q gi|254781037|r 195 PPSPGQGAICIETH---VNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLYFYG 263 (307)
Q Consensus 195 ~PA~gQGaIaIe~r---~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~l~a 263 (307)
++-|-|- ..|.+ ++.+-.+.+ .=|.+|+.+.|.=|.=+.+.|-+.+++..-..
T Consensus 64 -------~~iI~aDtvv~~~~~---i~~KP~~~~------eA~~~L~~lsg~~h~v~T~v~i~~~~~~~~~~ 119 (189)
T 1ex2_A 64 -------AIVIGADTMVCLDGE---CLGKPQDQE------EAASMLRRLSGRSHSVITAVSIQAENHSETFY 119 (189)
T ss_dssp -------SEEEEEEEEEEETTE---EECCCSSHH------HHHHHHHHHTTSEEEEEEEEEEEETTEEEEEE
T ss_pred -------CEEEEECEEEEECCE---EECCCCCHH------HHHHHHHHHCCCCEEEEEEEEEEECCEEEEEE
T ss_conf -------869972749998999---947999999------99999998289966999999999899899999
No 15
>>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} (A:1-89,A:243-316)
Probab=70.33 E-value=7.7 Score=18.90 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=57.1
Q ss_pred HHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHH-----HHHCCCCCCCCCCCCHHHCCCCCCC----CEEEEE
Q ss_conf 8899842377310330767999998637876556301454-----5421621122233686673585432----078999
Q gi|254781037|r 136 ALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAG-----IKRLKKEKVIKEILNIEDFPPSPGQ----GAICIE 206 (307)
Q Consensus 136 aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Ag-----l~RL~l~~~i~~~l~~~~~~PA~gQ----GaIaIe 206 (307)
+.-+..+|++.++ -+-++..-|+++.+++.|++++-..- ..--+|.....|......-.+.-+- -+=||.
T Consensus 25 a~~~~~~P~i~CV-~~~s~~dCi~~I~~~~AD~v~vd~~~vy~Ag~~~y~L~Pv~~E~Yg~~~~~~~~C~La~vP~haVV 103 (163)
T 1cb6_A 25 NMRKVRGPPVSCI-KRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRKDCHLARVPSHAVV 103 (163)
T ss_dssp HHHHTTCCCEEEE-ECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEEEEEETTEEETTSCSEEEECCEEE
T ss_pred HHHHCCCCCEEEE-ECCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEECCCCHHHE
T ss_conf 8863669986999-669999999998769989899687999986345378879998810257888487517705767866
Q ss_pred EECCCCHHHHHHHHHCCHH
Q ss_conf 8527612455677623978
Q gi|254781037|r 207 THVNNPKAQELVKVINHED 225 (307)
Q Consensus 207 ~r~~d~~i~~il~~Ind~~ 225 (307)
.|+++.....+.+.|++..
T Consensus 104 tR~~~~~~~~i~~~L~~~q 122 (163)
T 1cb6_A 104 ARSVNGKEDAIWNLLRQAQ 122 (163)
T ss_dssp EESSSCCHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHH
T ss_conf 5765203899999999999
No 16
>>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- binding, plasmid, transcription; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A (A:92-305)
Probab=66.84 E-value=6.7 Score=19.28 Aligned_cols=174 Identities=10% Similarity=0.026 Sum_probs=79.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403
Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307)
Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307)
+|+||+=.|--..+-...+.+..+. +|++++++.... +.++.++|.+|++|+++-..
T Consensus 2 ~lrIg~~~~~~~~~l~~~l~~f~~~---~P~i~i~l~~~~--------------------~~~~~~~l~~g~~D~~i~~~ 58 (214)
T 3fxq_A 2 HITFAASPAIALAALPLALASFARE---FPDVTVNVRDGM--------------------YPAVSPQLRDGTLDFALTAA 58 (214)
T ss_dssp EEEEEECHHHHHTHHHHHHHHHHHH---CTTCEEEEEECC--------------------TTTTHHHHHHTSSSEEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH---CCCCEEEEEECC--------------------CHHHHHHHHCCCCCEEEEEE
T ss_conf 5999625621687899999999997---899778777448--------------------17777887458701268850
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEECC------CCCCCCCCCCC--EEECCCCCHHHHHHHH-H---CCCCCHHHCC
Q ss_conf 432111012210122236568310566524------32433245673--2204753028889984-2---3773103307
Q gi|254781037|r 85 KDMPTKLLKGLQISAYLPREDIRDVFISHT------AQSLKDLALHS--VIGTSSLRRKALLLRW-R---SDISVIDFRG 152 (307)
Q Consensus 85 KDlP~~~~~~l~i~a~~~R~d~rD~lv~~~------~~~l~~lp~~a--~IGTsS~RR~aql~~~-~---p~l~~~~iRG 152 (307)
-...... .... .......-+.+... ..++.++.... .+..+...+..+.... . +..++.--=.
T Consensus 59 ~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (214)
T 3fxq_A 59 HKHDIDT----DLEA-QPLYVSDVVIVGQRQHPMANATRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCE 133 (214)
T ss_dssp CGGGSCT----TEEE-EEEEECCEEEEEETTCTTTTCCSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEEC
T ss_pred CCCCCCC----CCCE-EEECCCEEEEEECCCCCCCCCCCHHHHHHHEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 4533467----7503-6620340799986887445897713433201355137765312577899972897654200022
Q ss_pred CHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf 67999998637876556301454542162112223368667358543207899985276
Q gi|254781037|r 153 KIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN 211 (307)
Q Consensus 153 Nv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307)
+.++-+.-+.+|..=+++-.. -+...--...+. .++.++. .-+-.+.+.++++.
T Consensus 134 ~~~~~~~~v~~g~Gi~~lp~~-~~~~~~~~~~l~-~~~~~~~---~~~~~~~l~~~~~~ 187 (214)
T 3fxq_A 134 SFLALPGVVAHSDLLTTMPRT-LYERNAFKDQLC-SIPLQDA---LPNPTIYVLRRHDL 187 (214)
T ss_dssp CTTTHHHHHHTSSCEEEEEHH-HHHSSTTGGGEE-ECCCSSC---CCCCEEEEEEETTS
T ss_pred HHHHHHHHHHCCCEEEECCHH-HHHHHHHCCCEE-EEECCCC---CCCCEEEEEEECCC
T ss_conf 689999999739989980299-998561379989-9968888---87768999998969
No 17
>>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 2.00A {Homo sapiens} (A:)
Probab=66.31 E-value=3.4 Score=21.15 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=51.6
Q ss_pred CCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCE
Q ss_conf 67322047530288899842377310330767999998637876556301454542162112223368667358543207
Q gi|254781037|r 123 LHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGA 202 (307)
Q Consensus 123 ~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGa 202 (307)
..-++|++|+||+..|..+.-++.+.+ =++|.+..|-....-..++...|-.+=... ...+.. .-..+ ++
T Consensus 4 ~~iILaS~SprR~elL~~~gi~f~v~~--~~iDE~~~~~~~~~p~~~v~~lA~~KA~~v----~~~~~~--~~~~~--~~ 73 (230)
T 2p5x_A 4 KRVVLASASPRRQEILSNAGLRFEVVP--SKFKEKLDKASFATPYGYAMETAKQKALEV----ANRLYQ--KDLRA--PD 73 (230)
T ss_dssp SCEEECCCCHHHHHHHHHTTCCCEECC--CCCCCCCCGGGSSSHHHHHHHHHHHHHHHH----HHHHHH--HHSCC--CS
T ss_pred CCEEEECCCHHHHHHHHHCCCCEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHH----HHHHHH--CCCCC--CC
T ss_conf 888994799999999986899829956--898999874355885899999998777777----654320--14788--76
Q ss_pred EEEEE---ECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 89998---527612455677623978888878899999871776488528999999
Q gi|254781037|r 203 ICIET---HVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCK 255 (307)
Q Consensus 203 IaIe~---r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~ 255 (307)
+-|-| -.-|- +++.+-.+ ..+ =|.+|+.+.|.=|.-+-++|-+.
T Consensus 74 iVI~aDTvv~~~g---~I~~KP~~---~ee---A~~~L~~lsg~~h~v~T~v~i~~ 120 (230)
T 2p5x_A 74 VVIGADTIVTVGG---LILEKPVD---KQD---AYRMLSRLSGREHSVFTGVAIVH 120 (230)
T ss_dssp EEEEEEEEEEETT---EEECCCSS---HHH---HHHHHHHHTTSEEEEEEEEEEEE
T ss_pred EEEECCCCEEECC---CCCCCCCC---HHH---HHHHHHHHCCCCCCEEEEEEEEE
T ss_conf 8993375010057---43569887---789---97547762598742067899997
No 18
>>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} (A:1-91,A:254-334)
Probab=65.96 E-value=9.4 Score=18.33 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=54.1
Q ss_pred HHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEE-----HHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf 899842377310330767999998637876556301-----454542162112223368667358543207899985276
Q gi|254781037|r 137 LLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLA-----YAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN 211 (307)
Q Consensus 137 ql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA-----~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307)
.-+..+|.+.++ -..+....|+++.+++.|++++- .||+.-.+|.....+....++ +.=.=||..|+++
T Consensus 27 ~~r~~~P~l~CV-~~~s~~dCi~~I~~~~AD~vtlDgg~vy~Ag~~~y~L~PI~aE~Yg~~~-----~~~yhaVv~R~~~ 100 (172)
T 1h45_A 27 MRRVRGPPVSCI-KRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTER-----QPRTHAVVARSVN 100 (172)
T ss_dssp HHHTTCCCEEEE-ECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEEEEECSS-----SEESCEEEEESSS
T ss_pred HHHCCCCCEEEE-ECCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCEEEEEEECCCCC-----CCCCCEEEECCCC
T ss_conf 864568873899-5799999999987699888997869999863463699898963126788-----8860618976875
Q ss_pred CHHHHHHHHHCCH
Q ss_conf 1245567762397
Q gi|254781037|r 212 PKAQELVKVINHE 224 (307)
Q Consensus 212 ~~i~~il~~Ind~ 224 (307)
.+...+.+-|++.
T Consensus 101 ~~~~~i~~~L~~~ 113 (172)
T 1h45_A 101 GKEDAIWNLLRQA 113 (172)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 5389999999999
No 19
>>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis} (A:1-82,A:193-245)
Probab=60.52 E-value=12 Score=17.70 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=61.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307)
Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307)
|+|+||+-..+-+-.-...+...+++. |+.++++.+.. -. ....||-+|+||.-+-.
T Consensus 1 k~IkIG~~~~p~~ei~~~v~k~~~~~~----Gi~veiv~f~D---y~----------------~pN~AL~~G~IDaN~fQ 57 (135)
T 3ir1_A 1 KEIVFGTTVGDFGDMVKEQIQPELEKK----GYTVKLVEFTD---YV----------------RPNLALAEGELDINVFQ 57 (135)
T ss_dssp CEEEEEEETTHHHHHHHHTHHHHHHTT----TCEEEEEEESS---SS----------------HHHHHHHHTSCSEEEEE
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEEECC---CC----------------CHHHHHHCCCCCEEECC
T ss_conf 969998078986999999988999964----97699998268---54----------------16699866996656325
Q ss_pred ----CCCCCCCCCCCCEEEEECCCCCCCEEEEECCC
Q ss_conf ----34321110122101222365683105665243
Q gi|254781037|r 84 ----AKDMPTKLLKGLQISAYLPREDIRDVFISHTA 115 (307)
Q Consensus 84 ----lKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~ 115 (307)
|++--..-...|+..+.+.=++..-+++.|..
T Consensus 58 h~pyl~~~nk~~g~~L~~i~~t~~~py~N~i~vr~~ 93 (135)
T 3ir1_A 58 HKPYLDDFKKEHNLDITEVFQVPTAAYVNWSAVKTA 93 (135)
T ss_dssp CHHHHHHHHHHHTCCEEEEEECCBCTTCCEEEEEGG
T ss_pred CHHHHHHHHHHCCCCEEEEEEEEECCEEEEEEECCC
T ss_conf 799999999976997799966644364899998353
No 20
>>1h76_A Serotransferrin; iron transport, glycoprotein, metal-binding; HET: NAG; 2.15A {Sus scrofa} (A:1-338)
Probab=59.35 E-value=12 Score=17.57 Aligned_cols=112 Identities=14% Similarity=-0.004 Sum_probs=67.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974
Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307)
Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307)
.++||||.=... ...-.....+.|.+..+. +++++.+...+ ..++-++|.+|++|+++-
T Consensus 3 ~~~iri~~~~~~-~~~~~~~l~~~l~~~~~~-~~~v~~v~~~~-------------------~~~~~~~l~~g~~D~~~~ 61 (338)
T 1h76_A 3 QKTVRWCTISNQ-EANKCSSFRENMSKAVKN-GPLVSCVKKSS-------------------YLDCIKAIRDKEADAVTL 61 (338)
T ss_dssp CCEEEEEECSHH-HHHHHHHHHHHHHHHCSS-SCEEEEEECSS-------------------HHHHHHHHHTTSCCBEEE
T ss_pred CCCEEECCCCHH-HHHHHHHHHHHHHHHCCC-CCCEEEEECCC-------------------HHHHHHHHHCCCCCEEEE
T ss_conf 873698148989-999999999988874257-98769992599-------------------999999987699888984
Q ss_pred CCCCCC-C-CCCCCCEEEEECCCCCCC-------EEEEECCC--CCCCCCCCCCEEECCCCCHHH
Q ss_conf 034321-1-101221012223656831-------05665243--243324567322047530288
Q gi|254781037|r 83 SAKDMP-T-KLLKGLQISAYLPREDIR-------DVFISHTA--QSLKDLALHSVIGTSSLRRKA 136 (307)
Q Consensus 83 SlKDlP-~-~~~~~l~i~a~~~R~d~r-------D~lv~~~~--~~l~~lp~~a~IGTsS~RR~a 136 (307)
+--++= + ....++...+...+...+ -|+|.++. .+++|| +|.+++..++...+
T Consensus 62 ~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~y~svivvk~~s~~sl~DL-kGk~~~~~~~~s~s 125 (338)
T 1h76_A 62 DAGLVFEAGLAPYNLKPVVAEFYGQKDNPQTHYYAVAVVKKGSNFQWNQL-QGKRSCHTGLGRSA 125 (338)
T ss_dssp CHHHHHHHTSTTTCEEEEEEEEBSCTTSCBSEEEEEEEEETTCCCCGGGC-TTCEEEESCTTCTT
T ss_pred CHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCHHHC-CCCCCCCCCCCCCC
T ss_conf 83999985246579789997200467888347999999989986798782-89986268989877
No 21
>>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NADP-binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* (A:128-283)
Probab=58.70 E-value=13 Score=17.50 Aligned_cols=54 Identities=11% Similarity=-0.053 Sum_probs=46.8
Q ss_pred CCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 567322047530288899842377310330767999998637876556301454
Q gi|254781037|r 122 ALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAG 175 (307)
Q Consensus 122 p~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Ag 175 (307)
.--.+|.|+|..+...++.+.++-.+..--.+...+++++..|.+|.+|=+..+
T Consensus 61 ~g~~~i~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~gg~d~vid~vg~ 114 (156)
T 3gqv_A 61 SGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITN 114 (156)
T ss_dssp TTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCS
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 576301330243112323357532236421146899999705884089985068
No 22
>>2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP} (A:1-78,A:178-209)
Probab=57.33 E-value=13 Score=17.35 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=51.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403
Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307)
Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307)
.++||+=.|.-...-...+....++ +|++++++..-. ++++.+.|.+|++|+|+=..
T Consensus 6 ~LrIg~~~s~a~~lLp~~L~~F~~~---~P~I~i~i~~~~--------------------s~~i~~~L~~g~iDiaI~~~ 62 (110)
T 2ql3_A 6 PIAVGCYPALGPTILPSXLYAFTAE---YPRASVEFREDT--------------------QNRLRTQLEGGELDVAIVYD 62 (110)
T ss_dssp EEEEEECGGGTTTTHHHHHHHHHHH---CTTEEEEEEECC--------------------HHHHHHHHHTTSCSEEEEES
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHHH---CCCCEEEEEECC--------------------CHHHHHHHCCHHHHHHHHHC
T ss_conf 9999978889999999999999998---889789999764--------------------67776521111233232210
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEE
Q ss_conf 432111012210122236568310566
Q gi|254781037|r 85 KDMPTKLLKGLQISAYLPREDIRDVFI 111 (307)
Q Consensus 85 KDlP~~~~~~l~i~a~~~R~d~rD~lv 111 (307)
. ..++++....+..-+.|..+-|
T Consensus 63 ~----~~~~~l~~~~L~~ep~~~~~~~ 85 (110)
T 2ql3_A 63 L----DLSPEWQTVPLXTREKPASVAV 85 (110)
T ss_dssp S----SCCTTEEEEEEEEECCCCCEEE
T ss_pred C----CCCCCCEEEECCCCCCCCEEEE
T ss_conf 3----4421000121023328744799
No 23
>>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:1-119,A:232-295)
Probab=56.47 E-value=14 Score=17.26 Aligned_cols=88 Identities=14% Similarity=0.059 Sum_probs=49.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974
Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307)
Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307)
.++|+||.-++.-..+ ..+...+++. ++.+|++.+..-. ...++|.+|++|++.-
T Consensus 38 ~~~I~VG~~~~~~~~~--~~v~~~~kk~----Gi~Ve~v~f~d~~-------------------~~~~AL~~G~iD~n~~ 92 (183)
T 1p99_A 38 DKKVTIGVASNDTKAW--EKVKELAKKD----DIDVEIKHFSDYN-------------------LPNKALNDGDIDMNAF 92 (183)
T ss_dssp --CEEEEESSSCCHHH--HHHHHHHGGG----TCCEEEEECSSTT-------------------SHHHHHHTTSSSEEEE
T ss_pred CCEEEEEECCCCHHHH--HHHHHHHHHC----CCEEEEEEECCCH-------------------HHHHHHHCCCCCEEEC
T ss_conf 9639999679858999--9999999974----9879999837826-------------------7899987599775742
Q ss_pred CCCC-CCCC--CCCC--CEEEEECCC--CCC-CEEEEECCC
Q ss_conf 0343-2111--0122--101222365--683-105665243
Q gi|254781037|r 83 SAKD-MPTK--LLKG--LQISAYLPR--EDI-RDVFISHTA 115 (307)
Q Consensus 83 SlKD-lP~~--~~~~--l~i~a~~~R--~d~-rD~lv~~~~ 115 (307)
.... +... ...| +...+...- .+| --+++.|..
T Consensus 93 q~~p~l~~~~~~~~g~~l~~v~~~~~~~~~py~n~~~~r~~ 133 (183)
T 1p99_A 93 QHFAFLDQYKKAHKGTKISALSTTVLAAVKPYINIVAVNDK 133 (183)
T ss_dssp EEHHHHHHHHHHCTTCCEEEEEEEEECGGGGGEEEEEEEGG
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCC
T ss_conf 78999999997779954999413443567855899997840
No 24
>>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} (A:)
Probab=54.74 E-value=15 Score=17.08 Aligned_cols=111 Identities=11% Similarity=0.004 Sum_probs=70.7
Q ss_pred CCCEEEEEC--CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 882899707--988889999999999997408998338999997327411587556748622699999999870983699
Q gi|254781037|r 3 KKPFRIGTR--CSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA 80 (307)
Q Consensus 3 ~~~i~IgtR--~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA 80 (307)
.+++|+|.= .+.-...+-..+.+.|.+. .+.+++.+...+ ..+..++|.+|++|+|
T Consensus 3 ~~~lr~~v~~~~~~~~~~~~~~~~~~l~~~---~~~~v~~v~~~~-------------------~~~~~~~l~~g~~Dia 60 (327)
T 1ryo_A 3 DKTVRWCAVSEHEATKCQSFRDHMKSVIPS---DGPSVACVKKAS-------------------YLDCIRAIAANEADAV 60 (327)
T ss_dssp -CEEEEEEEHHHHHHHHHHHHHHHHHHSCT---TSCEEEEEEESS-------------------HHHHHHHHHTTSCCBE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHCCC---CCCCEEEEECCC-------------------HHHHHHHHHCCCCCEE
T ss_conf 998799846889999999999998863357---898769995799-------------------9999999976998889
Q ss_pred EECCCCCCC--CCCCCCEEEEECCCCC-------CCEEEEECCC--CCCCCCCCCCEEECCCCCHHH
Q ss_conf 740343211--1012210122236568-------3105665243--243324567322047530288
Q gi|254781037|r 81 VHSAKDMPT--KLLKGLQISAYLPRED-------IRDVFISHTA--QSLKDLALHSVIGTSSLRRKA 136 (307)
Q Consensus 81 VHSlKDlP~--~~~~~l~i~a~~~R~d-------~rD~lv~~~~--~~l~~lp~~a~IGTsS~RR~a 136 (307)
.-+--+.-. ....++...+...+.. .+-++|.++. .++.|| +|.+++-+++...+
T Consensus 61 ~~~~~~~~~a~~~~~~~~~ia~~~~~~~~~~~~~y~~viv~k~~~~~~~~dL-kGk~~~~~~~~S~s 126 (327)
T 1ryo_A 61 TLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQL-RGKKSCHTGLGRSA 126 (327)
T ss_dssp EECHHHHHHHHSTTTCCEEEEEEEEECSSSEESEEEEEEEEETTCCCCGGGC-TTCCEEESCTTCTT
T ss_pred EECHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCCCHHHC-CCCCCCCCCCCCCC
T ss_conf 9787999986424379878898731367888618999999965886424221-69863157999864
No 25
>>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01} (A:89-169,A:267-306)
Probab=54.04 E-value=15 Score=17.01 Aligned_cols=59 Identities=20% Similarity=0.075 Sum_probs=41.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307)
Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307)
-.|+||+=.+.-.-+-...+....++ +|++++++..-. +.++.+.|.+|++|+|+-.
T Consensus 7 G~LrIg~s~t~~~~lLp~iL~~F~~~---~P~I~i~I~~~~--------------------s~~i~~~L~~geiDlgI~~ 63 (121)
T 3fzv_A 7 GQIDIGCFETVAPLYLPGLIAGFRQA---YPGVEIRIRDGE--------------------QQELVQGLTSGRFDLAFLY 63 (121)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHH---CTTEEEEEEEEC--------------------HHHHHHHHHHTSCSEEEEC
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHH---CCCEEEEEECCC--------------------HHHHHHHHHHCCCCEEEEC
T ss_conf 06999961688999989999999864---897399995288--------------------8999999980874223321
Q ss_pred CC
Q ss_conf 34
Q gi|254781037|r 84 AK 85 (307)
Q Consensus 84 lK 85 (307)
-.
T Consensus 64 ~~ 65 (121)
T 3fzv_A 64 EH 65 (121)
T ss_dssp SS
T ss_pred CC
T ss_conf 67
No 26
>>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} (A:100-206)
Probab=52.69 E-value=16 Score=16.87 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=47.3
Q ss_pred EEEECC-C---CCCCCCCCCCEEECCCCCHHH-HHHHHHCC----CCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC
Q ss_conf 566524-3---243324567322047530288-89984237----73103307679999986378765563014545421
Q gi|254781037|r 109 VFISHT-A---QSLKDLALHSVIGTSSLRRKA-LLLRWRSD----ISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307)
Q Consensus 109 ~lv~~~-~---~~l~~lp~~a~IGTsS~RR~a-ql~~~~p~----l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307)
+|+.++ . ++++|| +|.+||..+-=-.. .+....+. ..-...-++....+..|.+|+.||.+...+-+..+
T Consensus 8 ~~vv~k~~~~i~~~~DL-kGk~i~v~~gs~~~~~l~~~~~~~g~~~~~i~~~~~~~~~~~al~~G~vDa~~~~~~~~~~~ 86 (107)
T 2o1m_A 8 KITVLQNNDTIRGIEDL-KGKRVITSATSNGALVLKKWNEDNGRPFEIAYEGQGANETANQLKSGRADATISTPFAVDFQ 86 (107)
T ss_dssp EEEEETTCCSCSSGGGC-TTCEEEECSSSHHHHHHHHHHHHTTCCSEEEECCSSTTHHHHHHHHTSCSBEEECHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCC-CCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCHHHHHH
T ss_conf 22222333222212456-64047765777699999998875178742201469999999997645212224650677888
Q ss_pred CC
Q ss_conf 62
Q gi|254781037|r 180 KK 181 (307)
Q Consensus 180 ~l 181 (307)
-.
T Consensus 87 ~~ 88 (107)
T 2o1m_A 87 NK 88 (107)
T ss_dssp HH
T ss_pred HH
T ss_conf 75
No 27
>>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} (A:135-223)
Probab=52.39 E-value=16 Score=16.84 Aligned_cols=70 Identities=10% Similarity=0.075 Sum_probs=49.6
Q ss_pred EEEECCC---CCCCCCCCCCEEECCCCCHH-HHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCC
Q ss_conf 5665243---24332456732204753028-889984237731033076799999863787655630145454216
Q gi|254781037|r 109 VFISHTA---QSLKDLALHSVIGTSSLRRK-ALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLK 180 (307)
Q Consensus 109 ~lv~~~~---~~l~~lp~~a~IGTsS~RR~-aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~ 180 (307)
+++.+++ ++++||. |.+||+..-=-. ..++...|+.++..+ .|.+..+..|.+|+.||++....-+..+-
T Consensus 2 ~i~~~~ds~i~~~~dL~-gk~Vgv~~gs~~~~~l~~~~~~~~i~~~-~~~~~~~~al~~g~vDa~~~d~~~~~~~~ 75 (89)
T 1xt8_A 2 GVAVPKDSNITSVEDLK-DKTLLLNKGTTADAYFTQNYPNIKTLKY-DQNTETFAALMDKRGDALSHDNTLLFAWV 75 (89)
T ss_dssp EEEEETTCCCCSSGGGT-TSEEEEETTSHHHHHHHHHCTTSEEEEE-SSHHHHHHHHHTTSSSEEEEEHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHC-CCEEEECCCCHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 25885164011055505-6124644776388776641003321023-33232123233210124526599999999
No 28
>>2b6d_A Lactotransferrin; complex, drugs, lactoferrin; HET: NAG MAN BMA DIF; 1.40A {Bos taurus} (A:)
Probab=51.68 E-value=16 Score=16.77 Aligned_cols=144 Identities=13% Similarity=-0.049 Sum_probs=79.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307)
Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307)
|+||+|+=.+.- ...++.|.+.. +..+|.+...+ ..+.-+++.+|++|+++-+
T Consensus 2 ~tir~~~~~~~~-----~~~~~~L~~~~---g~~v~~v~~~~-------------------~~~~~~ai~~g~~Di~~~~ 54 (345)
T 2b6d_A 2 TRVVWCAVGPEE-----QKKCQQWSQQS---GQNVTCATAST-------------------TDDCIVLVLKGEADALNLD 54 (345)
T ss_dssp CCEEEEEEHHHH-----HHHHHHHHHHT---TTSEEEEEESS-------------------HHHHHHHHHHTSCCEEEEC
T ss_pred CEEEEECCCHHH-----HHHHHHHHHHH---CCCEEEEECCC-------------------HHHHHHHHHCCCCCEEEEC
T ss_conf 818991389899-----99999999960---99869997899-------------------9999999976998889978
Q ss_pred CCCCCC-CCCCCCEEEEECCC------------CCC--CEEEEECCC---CCCCCCCCCCEEECCCCCHHH-------HH
Q ss_conf 343211-10122101222365------------683--105665243---243324567322047530288-------89
Q gi|254781037|r 84 AKDMPT-KLLKGLQISAYLPR------------EDI--RDVFISHTA---QSLKDLALHSVIGTSSLRRKA-------LL 138 (307)
Q Consensus 84 lKDlP~-~~~~~l~i~a~~~R------------~d~--rD~lv~~~~---~~l~~lp~~a~IGTsS~RR~a-------ql 138 (307)
--+... ....++.+.+...+ +.+ +-++|.+.. ++++|| +|.+++.+++...+ .|
T Consensus 55 ~~~~~~a~~~~~~~~la~~~~~~~~~~~~~~~~~~~~y~sv~vvr~ds~i~sl~DL-kGK~~~~~~~~stsg~~~p~~~L 133 (345)
T 2b6d_A 55 GGYIYTAGKCGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSL-KDKKSCHTAVDRTAGWNIPMGLI 133 (345)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCSSSCSSCGGGSCCCCEEEEEEEETTSTTCCGGGC-TTSEEEESCTTCTTTTHHHHHHH
T ss_pred HHHEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHH-HHCCEECCCCCCCCCCEEEEEEE
T ss_conf 27836652237832344320567765454102367732899995168876767888-41641125888765524457764
Q ss_pred HHH--HCC--C--CCHHHCCCHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 984--237--7--310330767999998637876556301454
Q gi|254781037|r 139 LRW--RSD--I--SVIDFRGKIETRLNKLNNNKAHAILLAYAG 175 (307)
Q Consensus 139 ~~~--~p~--l--~~~~iRGNv~TRl~Kl~~g~~DaiilA~Ag 175 (307)
... -|. . .-..+-|+-+.=+.-+..|++|+......-
T Consensus 134 ~~~g~~~~~~~~f~~~~~~g~~~~~~~a~~~g~~da~~~~~~~ 176 (345)
T 2b6d_A 134 VNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQGLDKCVP 176 (345)
T ss_dssp HHHHTCSCTTSSSSEEECTTSCTTSGGGTTCCCSTTSCSTTCS
T ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCC
T ss_conf 2688654502323333236877642122332588765455678
No 29
>>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} (A:1-90,A:253-316)
Probab=51.33 E-value=16 Score=16.85 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=52.5
Q ss_pred HHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEH-----HHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCH
Q ss_conf 98423773103307679999986378765563014-----5454216211222336866735854320789998527612
Q gi|254781037|r 139 LRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAY-----AGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPK 213 (307)
Q Consensus 139 ~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~-----Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~ 213 (307)
+-.+|.+.++ -..+.+..|+++.+++.|++++-. ||...-+|...+.+.....+ +.=.-+|..|+.|-.
T Consensus 28 rd~~P~i~CV-~~~s~~dCikaI~~~eAD~v~lDgg~vy~Agk~~y~L~PI~aE~Yg~~~-----~~~y~~v~~~~~~~~ 101 (154)
T 1blf_A 28 KLGAPSITCV-RRAFALECIRAIAEKKADAVTLDGGMVFEAGRDPYKLRPVAAEIYGTKE-----SPQTHAVVARSVDGK 101 (154)
T ss_dssp GGCSCCEEEE-ECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEEEEECSS-----SEESCEEEEESSSCC
T ss_pred HCCCCCEEEE-ECCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCEEEEEECCCCCC-----CCCEHHHEECCCCHH
T ss_conf 4579866999-6699999999987699888971869999974263787799986012578-----984555465675006
Q ss_pred HHHHHHHHC
Q ss_conf 455677623
Q gi|254781037|r 214 AQELVKVIN 222 (307)
Q Consensus 214 i~~il~~In 222 (307)
-..|.+-|+
T Consensus 102 ~~~i~~~l~ 110 (154)
T 1blf_A 102 EDLIWKLLS 110 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 30
>>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} (A:1-92,A:221-309)
Probab=49.35 E-value=18 Score=16.54 Aligned_cols=60 Identities=8% Similarity=-0.081 Sum_probs=46.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 98828997079888899999999999974089983389999973274115875567486226999999998709836997
Q gi|254781037|r 2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307)
Q Consensus 2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307)
+.++|+||+=+-.=+.+.++.+...|++. +++++... .+| +--+-++|-+|++|+.+
T Consensus 6 ~~~~I~ig~~~W~~~~~~t~i~~~iLe~~----Gy~v~~~~---~~~----------------~~~~~~ala~GdiD~~~ 62 (181)
T 1r9l_A 6 KGITVNPVQSTITEETFQTLLVSRALEKL----GYTVNKPS---EVD----------------YNVGYTSLASGDATFTA 62 (181)
T ss_dssp TTCEECEEECSCGGGHHHHHHHHHHHHHT----TCEECCCE---ECC----------------HHHHHHHHHHTSSCEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHC----CCCEEEEC---CCC----------------HHHHHHHHHCCCCEEEE
T ss_conf 99889883289648999999999999986----99646304---787----------------49999999869974998
Q ss_pred ECC
Q ss_conf 403
Q gi|254781037|r 82 HSA 84 (307)
Q Consensus 82 HSl 84 (307)
-.+
T Consensus 63 e~W 65 (181)
T 1r9l_A 63 VNW 65 (181)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 654
No 31
>>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis} (A:105-214)
Probab=49.18 E-value=11 Score=17.77 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=19.9
Q ss_pred EEEECCCCCCCCCCCCCEEECCCC
Q ss_conf 566524324332456732204753
Q gi|254781037|r 109 VFISHTAQSLKDLALHSVIGTSSL 132 (307)
Q Consensus 109 ~lv~~~~~~l~~lp~~a~IGTsS~ 132 (307)
.+-|++++++++||.|++|+-+.-
T Consensus 3 glYS~k~ksl~elp~Ga~IaIpnD 26 (110)
T 3gxa_A 3 GLYPGKLKSLEEVKDGSTVSAPND 26 (110)
T ss_dssp EEEESSCCCGGGCCTTCEEEEECS
T ss_pred EEECCCCCCHHHCCCCCEEEECCC
T ss_conf 453146587657358987994167
No 32
>>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis} (A:83-192)
Probab=49.18 E-value=11 Score=17.77 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=19.9
Q ss_pred EEEECCCCCCCCCCCCCEEECCCC
Q ss_conf 566524324332456732204753
Q gi|254781037|r 109 VFISHTAQSLKDLALHSVIGTSSL 132 (307)
Q Consensus 109 ~lv~~~~~~l~~lp~~a~IGTsS~ 132 (307)
.+-|++++++++||.|++|+-+.-
T Consensus 3 glYS~k~ksl~elp~Ga~IaIpnD 26 (110)
T 3ir1_A 3 GLYPGKLKSLEEVKDGSTVSAPND 26 (110)
T ss_dssp EEEESSCCCGGGCCTTCEEEEECS
T ss_pred EEEECCCCCHHHCCCCCEEEEECC
T ss_conf 887358687557559998997148
No 33
>>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} (A:83-193)
Probab=48.23 E-value=10 Score=18.11 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.1
Q ss_pred EEEECCCCCCCCCCCCCEEECCCC
Q ss_conf 566524324332456732204753
Q gi|254781037|r 109 VFISHTAQSLKDLALHSVIGTSSL 132 (307)
Q Consensus 109 ~lv~~~~~~l~~lp~~a~IGTsS~ 132 (307)
.+-|+++++++++|.|++|+-+.-
T Consensus 4 glYS~k~ksl~eip~Ga~IaIpnD 27 (111)
T 1xs5_A 4 ALYSRTYRHVSDFPAGAVIAIPND 27 (111)
T ss_dssp EEECSSCCSGGGCCTTCEEEEECS
T ss_pred EEEECCCCCHHHHCCCCEEECCCC
T ss_conf 898568766657426783554678
No 34
>>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} (A:)
Probab=47.82 E-value=19 Score=16.38 Aligned_cols=178 Identities=15% Similarity=0.104 Sum_probs=89.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307)
Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307)
-+++||+=.|-...+-...+....+. +|++++++..- .+.++.+.|.+|++|+|+-.
T Consensus 5 G~lrIg~~~~~~~~~l~~~l~~f~~~---~P~i~i~i~~~--------------------~~~~~~~~l~~g~~Dl~i~~ 61 (219)
T 1i6a_A 5 GPLHIGLIPTVGPYLLPHIIPMLHQT---FPKLEMYLHEA--------------------QTHQLLAQLDSGKLDAVILA 61 (219)
T ss_dssp EEEEEEECTTTHHHHHHHHHHHHHHH---CTTEEEEEEEC--------------------CHHHHHHHHHHTSCSEEEEE
T ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHH---CCCCEEEEEEC--------------------CHHHHHHHHHCCCEEEEEEE
T ss_conf 99999963788999999999999998---88938999989--------------------86999999857944677520
Q ss_pred CCCCCCCCCC----CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECC---CCCHHHH--HHHHHCCCCCHHHCCCH
Q ss_conf 3432111012----2101222365683105665243243324567322047---5302888--99842377310330767
Q gi|254781037|r 84 AKDMPTKLLK----GLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTS---SLRRKAL--LLRWRSDISVIDFRGKI 154 (307)
Q Consensus 84 lKDlP~~~~~----~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTs---S~RR~aq--l~~~~p~l~~~~iRGNv 154 (307)
...-+..... ......+.....|.. .+......+|.....+... ..|+..+ +.......+..---.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (219)
T 1i6a_A 62 LVKESEAFIEVPLFDEPMLLAIYEDHPWA---NREAVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSL 138 (219)
T ss_dssp CCGGGTTSEEEEEEEEEEEEEEETTSGGG---GCSCEEGGGGTTSEEECCTTTTCSSCTTSSCSSCTTSEEECTTTTSCH
T ss_pred CCCCCCCEEEEEECCCCEEEECCCCCCCC---CCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCH
T ss_conf 12333550688621223043013456201---477522445216405983588514678887898759874315898669
Q ss_pred HHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 9999986378765563014545421621122233686673585432078999852761
Q gi|254781037|r 155 ETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNP 212 (307)
Q Consensus 155 ~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~ 212 (307)
.+-+.-+.+|..-+++-...--.-+. ...+. .++.+. ..-.--+.+.++++..
T Consensus 139 ~~~~~~v~~g~Gi~~~p~~~~~~~~~-~~~l~-~~~~~~---~~~~~~~~l~~~~~~~ 191 (219)
T 1i6a_A 139 ETLRNMVAAGSGITLLPALAVPPERK-RDGVV-YLPAIK---PEPRRTIGLVYRPGSP 191 (219)
T ss_dssp HHHHHHHHTTSCBEEEEGGGSCSSSE-ETTEE-EECEES---SCCEEEEEEEECTTCT
T ss_pred HHHHHHHHHCCEEEEECHHHHHHHHH-CCCEE-EEECCC---CCCCEEEEEEEECCCC
T ss_conf 99999999399999964999975633-79889-997888---8861399999989197
No 35
>>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} (A:)
Probab=47.00 E-value=6.9 Score=19.19 Aligned_cols=115 Identities=19% Similarity=0.214 Sum_probs=55.8
Q ss_pred CCEEECCCCCHHHHHHHHH--CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 7322047530288899842--37731033076799999863787655630145454216211222336866735854320
Q gi|254781037|r 124 HSVIGTSSLRRKALLLRWR--SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQG 201 (307)
Q Consensus 124 ~a~IGTsS~RR~aql~~~~--p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQG 201 (307)
.-++|++|+||+..|..+- ++++|.-+-=++|.+.-|-.. ....+...|-.+=..+..++... ....+..
T Consensus 11 ~iILaS~SprR~~lL~~~Gi~~~~~F~~~~~~idE~~~~~~~--p~e~v~~lA~~Ka~~v~~~~~~~------~~~~~~~ 82 (207)
T 2amh_A 11 TMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAAD--PFELTESIARAKMKAVLEKARQH------SPPISGP 82 (207)
T ss_dssp EEEECCCCHHHHHHHHHHHTTTCSEEEECCCCCCGGGCCCSS--HHHHHHHHHHHHHHHHHHHHHTC------------C
T ss_pred CEEEECCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHH------HCCCCCC
T ss_conf 789905999999999965877787659869998988877789--79999999999898888777654------2246887
Q ss_pred EEEEEEE---CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 7899985---27612455677623978888878899999871776488528999999
Q gi|254781037|r 202 AICIETH---VNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCK 255 (307)
Q Consensus 202 aIaIe~r---~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~ 255 (307)
++-|-|- .-|. +++.+=.+.+ + =|.+|+.+.|..|.=+.++|-+.
T Consensus 83 ~ivi~aDtvv~~~g---~i~~KP~~~~---e---A~~~L~~lsG~~h~v~T~v~l~~ 130 (207)
T 2amh_A 83 AIALTFDQVVVKGD---EVREKPLSTE---Q---CRSFIASYSGGGVRTVATYALCV 130 (207)
T ss_dssp EEEEEEEEEEEETT---EEECSCSSHH---H---HHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CEEEEECCHHCCCC---CCCCCCCCHH---H---HHHHHHHHCCCCEEEEEEEEEEE
T ss_conf 48998232002134---3036988527---8---99999997499508999999996
No 36
>>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} (A:1-90,A:174-232)
Probab=45.69 E-value=14 Score=17.19 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=47.0
Q ss_pred HHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEH-HHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHH
Q ss_conf 88998423773103307679999986378765563014-54542162112223368667358543207899985276124
Q gi|254781037|r 136 ALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAY-AGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKA 214 (307)
Q Consensus 136 aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~-Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i 214 (307)
++....+-++++.-.-.+-++++..|.+|++|.++=+. .--+|...- .|+...+.+..| .-+||-.|++|+++
T Consensus 35 ~~~ia~~lg~~~e~~~~~~~~l~~~L~~g~~D~v~~~~~it~eR~~~~-----~FS~PY~~~~~g-~~~gi~~~k~~~~L 108 (149)
T 3i6v_A 35 GDELCKRAGLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVI-----DFTQNYIPVPLG-GGVGMGLRESDGEL 108 (149)
T ss_dssp HHHHHHHHTCCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTTS-----EEEEEEECEECS-SCEEEEECTTCHHH
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHCCCCCEEEECCCCCHHHHCCE-----EEECCEECCCCC-CEEEEEECCCCHHH
T ss_conf 999999849967999746175699997799889998784796775026-----663211027766-40799983899999
Q ss_pred HHHH
Q ss_conf 5567
Q gi|254781037|r 215 QELV 218 (307)
Q Consensus 215 ~~il 218 (307)
++-+
T Consensus 109 ~~~i 112 (149)
T 3i6v_A 109 RGKF 112 (149)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 37
>>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:120-231)
Probab=44.79 E-value=12 Score=17.56 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=20.0
Q ss_pred EEEECCCCCCCCCCCCCEEECCCC
Q ss_conf 566524324332456732204753
Q gi|254781037|r 109 VFISHTAQSLKDLALHSVIGTSSL 132 (307)
Q Consensus 109 ~lv~~~~~~l~~lp~~a~IGTsS~ 132 (307)
.|-|+++++++++|.|++|+-++-
T Consensus 3 glYS~k~~sl~elp~Ga~IaIpnD 26 (112)
T 1p99_A 3 GIYSDKIKDVKKVKDGAKVVIPND 26 (112)
T ss_dssp EEECSSCSCGGGCCTTCEEEEECS
T ss_pred EEECCCCCCHHHCCCCCEEEEECC
T ss_conf 665256564201357997996158
No 38
>>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginosa PA01,structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} (A:86-207)
Probab=40.58 E-value=24 Score=15.67 Aligned_cols=63 Identities=8% Similarity=-0.033 Sum_probs=45.8
Q ss_pred CCCCCCC-CCCEEECCCCCH-HHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC
Q ss_conf 2433245-673220475302-888998423773103307679999986378765563014545421
Q gi|254781037|r 116 QSLKDLA-LHSVIGTSSLRR-KALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307)
Q Consensus 116 ~~l~~lp-~~a~IGTsS~RR-~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307)
+++++|. +|-+||+.+-=- ...++..+|+.++..+ -+...-+..|.+|+.||++.-...+.-+
T Consensus 31 ~~~~dl~~~g~~v~v~~gs~~~~~l~~~~~~~~i~~~-~~~~~~~~~l~~g~~Da~~~d~~~~~~~ 95 (122)
T 3kbr_A 31 QTLEQIDQPGVTAIVNPGGTNEKFARANLKKARILVH-PDNVTIFQQIVDGKADLXXTDAIEARLQ 95 (122)
T ss_dssp SSHHHHSSTTCEEEECTTSHHHHHHHHHCSSSEEEEC-CCTTTHHHHHHTTSCSEEEEEHHHHHHH
T ss_pred CCHHHHHCCCCCEEECCCCCCCCHHHHCCCCCEEEEH-HHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 3012331268631322443222011100333012201-2488999998620410102658999999
No 39
>>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcriptional regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A* (A:)
Probab=40.41 E-value=24 Score=15.65 Aligned_cols=186 Identities=15% Similarity=0.112 Sum_probs=93.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307)
Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307)
..++||+-.+-...+-...+....+. +|++.++++... +.++.+.|.+|++|+++.+
T Consensus 90 ~~~~i~~~~~~~~~~~~~~l~~~~~~---~P~~~i~~~~~~--------------------~~~~~~~l~~~~iDi~i~~ 146 (312)
T 2h9b_A 90 KTIRIGFVGSLLFGLLPRIIHLYRQA---HPNLRIELYEMG--------------------TKAQTEALKEGRIDAGFGR 146 (312)
T ss_dssp CEEEEEECGGGGGTTHHHHHHHHHHT---CTTCEEEEEECC--------------------HHHHHHHHHTTSCSEEEES
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCC--------------------HHHHHHHHHCCCCCCCCCC
T ss_conf 43898400777999999999999997---876543322220--------------------5569999975886434323
Q ss_pred CCCCCC----CCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEE----ECCCCCHHHHHHHHH-CCCCC--HHHCC
Q ss_conf 343211----10122101222365683105665243243324567322----047530288899842-37731--03307
Q gi|254781037|r 84 AKDMPT----KLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVI----GTSSLRRKALLLRWR-SDISV--IDFRG 152 (307)
Q Consensus 84 lKDlP~----~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~I----GTsS~RR~aql~~~~-p~l~~--~~iRG 152 (307)
...-+. ..-..-.+.++.++..|.... .+...++.+|.....+ ++.+..+......+. ..+.. .--=.
T Consensus 147 ~~~~~~~~~~~~l~~~~~~~v~~~~~~l~~~-~~~~~~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (312)
T 2h9b_A 147 LKISDPAIKHSLLRNERLMVAVHASHPLNQM-KDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVR 225 (312)
T ss_dssp SCCCCTTEEEEEEEEEEEEEEEETTSGGGGG-TTTCBCGGGSTTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECS
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCHHHHHH-HCCCCCCCCCHHHHHEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 5554211000234320011343643577764-202222331100210112310012023444544311333333333445
Q ss_pred CHHHHHHHHHCCCCCEEEEEHHHHHHC-CCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC--CHHHHHHHHH
Q ss_conf 679999986378765563014545421-62112223368667358543207899985276--1245567762
Q gi|254781037|r 153 KIETRLNKLNNNKAHAILLAYAGIKRL-KKEKVIKEILNIEDFPPSPGQGAICIETHVNN--PKAQELVKVI 221 (307)
Q Consensus 153 Nv~TRl~Kl~~g~~DaiilA~Agl~RL-~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d--~~i~~il~~I 221 (307)
+.++-+.-+..|..-+++=+.+.-... ++ ......+ ...-.-+.+.+|+.+ ..+..+++.+
T Consensus 226 ~~~~~~~lv~~g~gi~~lP~~~~~~~~~~l--~~~~l~~------~~~~~~~~l~~~~~~~~~~~~~~~~~i 289 (312)
T 2h9b_A 226 EVQLALGLVAAGEGISLVPASTQSIQLFNL--SYVPLLD------PDAITPIYIAVRNMEESTYIYSLYETI 289 (312)
T ss_dssp SHHHHHHHHHTTSCBEEEEGGGGGBCCTTE--EEEEBCS------TTCEEEEEEEEETTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCEEEECCHHHHHHHHCCE--EEEECCC------CCCEEEEEEEEECCCCCHHHHHHHHHH
T ss_conf 678999999829959981098986654886--9998479------885438999997999999999999999
No 40
>>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, non-classical hydrogen bonds; 1.80A {Archaeoglobus fulgidus dsm 4304} (A:1-110,A:209-275)
Probab=40.32 E-value=24 Score=15.65 Aligned_cols=59 Identities=17% Similarity=0.053 Sum_probs=45.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 98828997079888899999999999974089983389999973274115875567486226999999998709836997
Q gi|254781037|r 2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307)
Q Consensus 2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307)
+..+|+|||....=..+=+++.+..|+.. ++.+++. ..+|+ +.-+-.+|.+|+||+.+
T Consensus 4 ~~~~ivIgsk~ftE~~ILaeiy~~~Le~~----G~~v~~~--------------~~lG~----t~~~~~AL~~G~iDiyp 61 (177)
T 1sw5_A 4 SSERVVIGSKPFNEQYILANMIAILLEEN----GYKAEVK--------------EGLGG----TLVNYEALKRNDIQLYV 61 (177)
T ss_dssp --CCEEECCCSSHHHHHHHHHHHHHHHHT----TCCEEEC--------------TTCCS----HHHHHHHHHHTSSSEEE
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHC----CCCEEEE--------------ECCCC----CHHHHHHHHCCCCCEEE
T ss_conf 89977995788859999999999999986----9964898--------------65786----18899999769976654
Q ss_pred E
Q ss_conf 4
Q gi|254781037|r 82 H 82 (307)
Q Consensus 82 H 82 (307)
-
T Consensus 62 e 62 (177)
T 1sw5_A 62 E 62 (177)
T ss_dssp E
T ss_pred C
T ss_conf 0
No 41
>>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national institute of allergy and infectious diseases, niaid, hydrolase; 1.76A {Salmonella typhimurium LT2} PDB: 1mzg_A (A:)
Probab=38.43 E-value=26 Score=15.46 Aligned_cols=52 Identities=10% Similarity=-0.113 Sum_probs=32.1
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHH-----------HHHHCCCCCCCEEEEEEEE-CCEEEEEEE
Q ss_conf 245567762397888887889999-----------9871776488528999999-998999999
Q gi|254781037|r 213 KAQELVKVINHEDTWDSVNCERAF-----------LAELDGSCKSAIAGFAYCK-GSTLYFYGI 264 (307)
Q Consensus 213 ~i~~il~~Ind~~T~~~v~aER~f-----------L~~L~GgC~~PIGa~A~i~-~~~l~l~a~ 264 (307)
++.+-+..+.+++-+...-.+-+= =...=.||.+++-.++.++ ++.++|.|-
T Consensus 12 ~i~~~f~~~~d~e~ry~~li~lgk~Lp~lp~~~k~~~~~V~GC~S~vWl~~e~~~dg~~~f~~d 75 (141)
T 3g0m_A 12 KLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNPQNTIHGCQSQVWIVMRRNANGIIELQGD 75 (141)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHTSCCCCGGGCSGGGBCCSSSSCEEEEEEECTTSBEEEEEE
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
T ss_conf 9999988489999999999998833889994775821518887347467899868987999755
No 42
>>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=37.65 E-value=27 Score=15.38 Aligned_cols=33 Identities=6% Similarity=0.074 Sum_probs=27.5
Q ss_pred HHHHHHHHCCCCCHHHC------CCHHHHHHHHHCCCCC
Q ss_conf 88899842377310330------7679999986378765
Q gi|254781037|r 135 KALLLRWRSDISVIDFR------GKIETRLNKLNNNKAH 167 (307)
Q Consensus 135 ~aql~~~~p~l~~~~iR------GNv~TRl~Kl~~g~~D 167 (307)
..|++..+|++....|+ |||+.-+..+.+|.++
T Consensus 17 ve~V~~mfP~vp~~~I~~DL~~TgsV~~Ti~niLeGrl~ 55 (61)
T 2ekf_A 17 AQRVKEVLPHVPLGVIQRDLAKTGCVDLTITNLLEGAVA 55 (61)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHTSCCHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 999999868999999999999738899999999838999
No 43
>>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} (A:109-205)
Probab=36.73 E-value=28 Score=15.29 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=45.8
Q ss_pred EEEECCC---CCCCCCCCCCEEECCCCCHHHHHHHHH--------CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 5665243---243324567322047530288899842--------37731033076799999863787655630145454
Q gi|254781037|r 109 VFISHTA---QSLKDLALHSVIGTSSLRRKALLLRWR--------SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIK 177 (307)
Q Consensus 109 ~lv~~~~---~~l~~lp~~a~IGTsS~RR~aql~~~~--------p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~ 177 (307)
+++.+.. ++++|| +|-+||+.+-=-..++.... ++.+++. =.+.++-+.-|.+|+.||.++...-+.
T Consensus 2 ~ivv~kds~i~s~~dL-kGk~i~v~~gs~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~G~vDa~~~~~~~~~ 79 (97)
T 3hv1_A 2 VLVTKKSSGIDSVAGX-AGKTLGAQAGSSGYDAFNASPKILKDVVANQKVVQ-YSTFTQALIDLNSGRIDGLLIDRVYAN 79 (97)
T ss_dssp EEEEEGGGCCCSSGGG-TTCCEEEETTCHHHHHHHHCTTTTTTTSGGGCEEE-ESSHHHHHHHHHHTSCSEEEEEHHHHH
T ss_pred EEEEECCCCCCCHHHH-CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEE-ECCHHHHHHHHHCCCEEEEEECHHHHH
T ss_conf 9999789999997995-89879996386199999976766764167744998-446899999997597479996499999
Q ss_pred HCC
Q ss_conf 216
Q gi|254781037|r 178 RLK 180 (307)
Q Consensus 178 RL~ 180 (307)
.+-
T Consensus 80 ~~~ 82 (97)
T 3hv1_A 80 YYL 82 (97)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 44
>>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A (A:)
Probab=36.02 E-value=28 Score=15.22 Aligned_cols=215 Identities=11% Similarity=-0.010 Sum_probs=106.7
Q ss_pred CCEEEEECCCH--HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 82899707988--8899999999999974089983389999973274115875567486226999999998709836997
Q gi|254781037|r 4 KPFRIGTRCSP--LALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307)
Q Consensus 4 ~~i~IgtR~S~--LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307)
.++++++=... ......+...+.+.+.. +..+++.. -+.|. +|+ ..++-+++..|.+|++.
T Consensus 34 ~~l~~~~~~~~~~~~~~~~~~~~~~v~e~t---~g~i~v~~-~~~g~---------l~~----~~~~~~a~~~G~id~~~ 96 (361)
T 2zzv_A 34 YRWRIQTAWDAGTVGYSLFQKFTERVKELT---DGQLEVQP-FPAGA---------VVG----TFDMFDAVKTGVLDGMN 96 (361)
T ss_dssp EEEEEEESSCTTSHHHHHHHHHHHHHHHHT---TTSEEEEE-ECTTS---------SSC----GGGHHHHHHHTSSSEEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEE-ECCCC---------CCC----HHHHHHHHHCCCCCCEE
T ss_conf 699996578998767899999999999976---99189999-37987---------488----79999999769886301
Q ss_pred ECCCCCCCCCCCCC------------EEEEEC------------------------CCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 40343211101221------------012223------------------------656831056652432433245673
Q gi|254781037|r 82 HSAKDMPTKLLKGL------------QISAYL------------------------PREDIRDVFISHTAQSLKDLALHS 125 (307)
Q Consensus 82 HSlKDlP~~~~~~l------------~i~a~~------------------------~R~d~rD~lv~~~~~~l~~lp~~a 125 (307)
.+.=-++...|.-- ....+. .-..++-+...+.-++++|| +|.
T Consensus 97 ~~~~~~~~~~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~I~s~~DL-kG~ 175 (361)
T 2zzv_A 97 PFTLYWAGRMPVTAFLSSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVGPVQHDLNIIHSKKPIRRFEDF-KGV 175 (361)
T ss_dssp CBGGGGTTTCGGGGGSSCCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEEEECCCCCCEEESSCCCSGGGG-TTC
T ss_pred ECHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCCCCHHHH-CCC
T ss_conf 2317651215114332564346884999999970533689999999877958983315776300158888997997-698
Q ss_pred EEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEH-HHHHHCCCCCCCCCCCCHHHCCCCCCCCEE-
Q ss_conf 220475302888998423773103307679999986378765563014-545421621122233686673585432078-
Q gi|254781037|r 126 VIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAY-AGIKRLKKEKVIKEILNIEDFPPSPGQGAI- 203 (307)
Q Consensus 126 ~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~-Agl~RL~l~~~i~~~l~~~~~~PA~gQGaI- 203 (307)
+|.+.|.==..+++. +-..++.=....-..-|..|..||.+... +....+++.+...++.+.+...|..+++..
T Consensus 176 kir~~~~~~~~~l~~----~Ga~~v~i~~~e~~~Al~~G~vDa~~~~~p~~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~ 251 (361)
T 2zzv_A 176 KLRVPGGMIAEVFAA----AGASTVLLPGGEVYPALERGVIDAADFVGPAVNYNLGFHQVAKYIIMGPPETPAIHQPVDL 251 (361)
T ss_dssp EEECCSHHHHHHHHH----TTCEEECCCGGGHHHHHHTTSCSEEECSCHHHHHHTTHHHHCSEEEECCTTSSCSSCSSCC
T ss_pred EEEECCHHHHHHHHH----CCCCCEECCHHHHHHHHHCCCEEEEECCCHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCE
T ss_conf 799508689999998----6992244568989999976971001257366654036125788999567777754445330
Q ss_pred -EEEEECC-----CCHHHHHHHH----HCCHHHHHHHHHHHHHHHHH
Q ss_conf -9998527-----6124556776----23978888878899999871
Q gi|254781037|r 204 -CIETHVN-----NPKAQELVKV----INHEDTWDSVNCERAFLAEL 240 (307)
Q Consensus 204 -aIe~r~~-----d~~i~~il~~----Ind~~T~~~v~aER~fL~~L 240 (307)
.+.+.++ +++.++++.. ..+.-.......+...++.+
T Consensus 252 ~~~~~n~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 298 (361)
T 2zzv_A 252 MDFTINLNRWRSLPKPLQERFIAAVHEYSWIHYAGIQKANLEAWPKY 298 (361)
T ss_dssp EEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57897389985399999999999999999999999999889999999
No 45
>>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus HB8} (A:)
Probab=35.75 E-value=29 Score=15.19 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=19.3
Q ss_pred CCCCCCEEEEEEEECCEEEEEEEEEC
Q ss_conf 76488528999999998999999986
Q gi|254781037|r 242 GSCKSAIAGFAYCKGSTLYFYGIVLA 267 (307)
Q Consensus 242 GgC~~PIGa~A~i~~~~l~l~a~v~s 267 (307)
.||.+++-.++..++++..++....|
T Consensus 45 ~GC~S~VWl~~~~~~~~~~l~f~~dS 70 (136)
T 1wlo_A 45 HECQTPFFVHADVEGGKVRLYFHVPD 70 (136)
T ss_dssp TTSSSCCEEEEEEETTEEEEEEECSS
T ss_pred CCCEEEEEEEEEECCCCCEEEEEECC
T ss_conf 55601024567732875058986061
No 46
>>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium LT2} (A:1-149)
Probab=35.62 E-value=29 Score=15.17 Aligned_cols=99 Identities=8% Similarity=0.098 Sum_probs=57.7
Q ss_pred CCCCCEEEEECCCH-HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 99882899707988-88999999999999740899833899999732741158755674862269999999987098369
Q gi|254781037|r 1 MEKKPFRIGTRCSP-LALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDC 79 (307)
Q Consensus 1 M~~~~i~IgtR~S~-LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDi 79 (307)
|+++++|||-=|.- .+. .++...+.. ...++++-+-.........-..+.+.+..++.++++.|.+..+|+
T Consensus 19 ~~~~~~ri~iiG~G~~g~---~~~~~~~~~-----~~~~~i~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~iD~ 90 (149)
T 3ec7_A 19 FQGXTLKAGIVGIGXIGS---DHLRRLANT-----VSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEV 90 (149)
T ss_dssp ---CCEEEEEECCSHHHH---HHHHHHHHT-----CTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCE
T ss_pred HCCCCEEEEEECCHHHHH---HHHHHHHHC-----CCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCE
T ss_conf 169951499999809999---999999846-----999789999779999999999982999742398999963889888
Q ss_pred EEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf 9740343211101221012223656831056652
Q gi|254781037|r 80 AVHSAKDMPTKLLKGLQISAYLPREDIRDVFISH 113 (307)
Q Consensus 80 AVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~ 113 (307)
++-+. |..........+ +++. ..||+-+
T Consensus 91 V~i~t---p~~~h~~~~~~~-l~~g--~~V~~EK 118 (149)
T 3ec7_A 91 VIITA---SNEAHADVAVAA-LNAN--KYVFCEK 118 (149)
T ss_dssp EEECS---CGGGHHHHHHHH-HHTT--CEEEEES
T ss_pred EEECC---CCCCCCHHHHHC-CCCC--CHHHCCC
T ss_conf 97414---222200111100-2433--0101143
No 47
>>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} (A:88-189)
Probab=35.40 E-value=29 Score=15.15 Aligned_cols=70 Identities=24% Similarity=0.272 Sum_probs=50.5
Q ss_pred EEEECCC---CCCCCCCCCCEEECCCCC-HHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCC
Q ss_conf 5665243---243324567322047530-28889984237731033076799999863787655630145454216
Q gi|254781037|r 109 VFISHTA---QSLKDLALHSVIGTSSLR-RKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLK 180 (307)
Q Consensus 109 ~lv~~~~---~~l~~lp~~a~IGTsS~R-R~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~ 180 (307)
+++.+++ ++++|| .|.+||..+-= =..+++...|+..++.. .+.+..+.-|.+|+.||++....-+..+-
T Consensus 6 ~i~v~~~s~i~~~~dL-~Gk~I~v~~gt~~~~~~~~~~~~~~i~~~-~~~~~~~~~l~~G~vDa~~~d~~~~~~~~ 79 (102)
T 3kzg_A 6 QYITTVDSKISTFDDL-HGKKIGVRKGTPYARQVLSENRNNQVIFY-ELIQDXLLGLSNNQVDASLXDYEAAKYWX 79 (102)
T ss_dssp EEEEETTCSCCSGGGG-TTCEEEEETTSTHHHHHHHTCSSCEEEEE-SSHHHHHHHHHTTSSSEEEEEHHHHHHHH
T ss_pred EEEEECCCCCCCHHHH-CCCCEEEECCCHHHHHHHHHCCCCEEEEC-CCHHHHHHHHHCCCCCEEEECHHHHHHHH
T ss_conf 6665056777897897-68830111797688888874667426631-31277899987699409994499999999
No 48
>>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} (A:1-134,A:224-292)
Probab=35.32 E-value=29 Score=15.14 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=45.5
Q ss_pred HHHHHH-HCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHH-HHHHC---CCCCCCCCCCCHHHCCCCCCCCEEEEEEECC
Q ss_conf 889984-237731033076799999863787655630145-45421---6211222336866735854320789998527
Q gi|254781037|r 136 ALLLRW-RSDISVIDFRGKIETRLNKLNNNKAHAILLAYA-GIKRL---KKEKVIKEILNIEDFPPSPGQGAICIETHVN 210 (307)
Q Consensus 136 aql~~~-~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~A-gl~RL---~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~ 210 (307)
+..+.+ .+++++.-+--+-+.|+..|.+|++|.++=... --+|- .+...+ .....|-.||+-+.+.
T Consensus 76 ~iAk~Lg~~~~kvefv~v~~~~~i~~L~sGkvDiv~a~~tiT~eR~~~vdFS~PY---------~~v~~~~~~~~~v~kg 146 (203)
T 1xt8_A 76 RIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPY---------MKVANKDVIAPAVKKG 146 (203)
T ss_dssp HHHHHHHSCTTCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCC---------EEEEEEEEECCEEETT
T ss_pred HHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCEEEEEEECC
T ss_conf 9999843887246666412877755412343342133355553301235666552---------1134775499999699
Q ss_pred CCHHHHHHH
Q ss_conf 612455677
Q gi|254781037|r 211 NPKAQELVK 219 (307)
Q Consensus 211 d~~i~~il~ 219 (307)
|.++.++++
T Consensus 147 n~~l~~~~n 155 (203)
T 1xt8_A 147 DKELKEFID 155 (203)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
T ss_conf 999999999
No 49
>>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} (A:)
Probab=35.18 E-value=29 Score=15.13 Aligned_cols=184 Identities=10% Similarity=0.002 Sum_probs=94.1
Q ss_pred CCCEEEEECC--CHHHHH---------HHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHH
Q ss_conf 8828997079--888899---------99999999997408998338999997327411587556748622699999999
Q gi|254781037|r 3 KKPFRIGTRC--SPLALA---------HAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKK 71 (307)
Q Consensus 3 ~~~i~IgtR~--S~LAl~---------Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~a 71 (307)
.++|++|+.. .|+... -.+.+....+. .++.++++.+.. ..+-.+
T Consensus 10 ~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~----~g~~~~~~~~~~--------------------~~~~~~ 65 (234)
T 3h7m_A 10 HRTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEV----MGMTVEFRLGAW--------------------SEMFSA 65 (234)
T ss_dssp SSCEEEEEETEETTTEEECTTSCEESHHHHHHHHHHHH----HTCCEEEEEECG--------------------GGHHHH
T ss_pred CCEEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHH----HCCCEEEECCCH--------------------HHHHHH
T ss_conf 99099998899899068999998887699999999999----599759931799--------------------999999
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC----CCCCCCCCCCEEECCCCCHHH-HHHHHHCCCC
Q ss_conf 87098369974034321110122101222365683105665243----243324567322047530288-8998423773
Q gi|254781037|r 72 LISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA----QSLKDLALHSVIGTSSLRRKA-LLLRWRSDIS 146 (307)
Q Consensus 72 Ll~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~----~~l~~lp~~a~IGTsS~RR~a-ql~~~~p~l~ 146 (307)
+.+|++|++.=....-. ..+.+......-+ . .-+++.+.. ....++ .|.+||+.+--... .+....+...
T Consensus 66 l~~g~~d~~~~~~~~~~--r~~~~~fs~p~~~-~-~~~~~~~~~~~~~~~~~~l-~~~~i~v~~g~~~~~~~~~~~~~~~ 140 (234)
T 3h7m_A 66 LKSGRVDVLQGISWSEK--RARQIDFTPPHTI-V-YHAIFARRDSPPAAGLEDL-RGRKVALHRDGIMHEYLAERGYGKD 140 (234)
T ss_dssp HHTTSSSEEEEEECCHH--HHTTEEEEEEEEE-E-EEEEEEESSSCCCSSGGGG-TTSCEEEETTSHHHHHHHTTTCGGG
T ss_pred HHCCCCCCCCCCCCCHH--HHHCCCCCCCCCC-E-EEEEEEEECCCCCCCHHHH-CCCEEEEECCCHHHHHHHHHCCCCC
T ss_conf 98699662001002287--7740576887531-2-2589886212345775672-7982334379739999998555862
Q ss_pred CHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 1033076799999863787655630145454216211222336866735854320789998527612455677
Q gi|254781037|r 147 VIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVK 219 (307)
Q Consensus 147 ~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~ 219 (307)
++.. .+.+.-+..|.+|++|+.+....-+.-+--....... ....+..-...+++-.++++..+.+.+.
T Consensus 141 ~~~~-~~~~~~~~~l~~gr~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~in 209 (234)
T 3h7m_A 141 LVLT-PTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNL---VPVARSIAAQRYGYAVRQGDAELLARFS 209 (234)
T ss_dssp EEEE-SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTE---EEEEEEEEEEEEEEEEETTCHHHHHHHH
T ss_pred EEHH-HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCC---CCCCCCCCCCEEEEEEECCCHHHHHHHH
T ss_conf 1000-1267789999769956999507888999986788633---1035677775289999589999999999
No 50
>>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} (A:89-294)
Probab=33.19 E-value=32 Score=14.92 Aligned_cols=183 Identities=10% Similarity=0.049 Sum_probs=90.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403
Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307)
Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307)
.|+||+-.|....+=...+.+.-+. +|++++++..-. +.++.+.|.+|++|+++...
T Consensus 4 ~lrIg~~~~~~~~~l~~~l~~f~~~---~P~i~i~i~~~~--------------------~~~~~~~l~~g~~D~~i~~~ 60 (206)
T 1ixc_A 4 ELSVAYFGTPIYRSLPLLLRAFLTS---TPTATVSLTHXT--------------------KDEQVEGLLAGTIHVGFSRF 60 (206)
T ss_dssp EEEEEECSGGGGTHHHHHHHHHHHH---CTTEEEEEEECC--------------------HHHHHHHHHHTSCSEEEESC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHH---CCCCCCCCEEEC--------------------CHHCCCCCCCCCEEEEEECC
T ss_conf 3787315307999999999999752---876544304520--------------------30003322378557998516
Q ss_pred CCCCC----CCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEE---CCCCCHHHH----HHHHHCCCCCHHHCCC
Q ss_conf 43211----101221012223656831056652432433245673220---475302888----9984237731033076
Q gi|254781037|r 85 KDMPT----KLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIG---TSSLRRKAL----LLRWRSDISVIDFRGK 153 (307)
Q Consensus 85 KDlP~----~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IG---TsS~RR~aq----l~~~~p~l~~~~iRGN 153 (307)
-.-+. ..-.......+.....+.. .+...++.++.....+. ....+.... .........+.---.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (206)
T 1ixc_A 61 FPRHPGIEIVNIAQEDLYLAVHRSQSGK---FGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVED 137 (206)
T ss_dssp CCCCTTEEEEEEEEEEEEEEEEGGGGGG---TCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSS
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCHHHH---CCCCCCHHHHHCCCEEEECCCCCCEEEHHHHHHHHCCCCCCCEEEEECC
T ss_conf 7778876522124420799982630664---1899999998279879962777740002256665403468734688677
Q ss_pred HHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC--CHHHHHHHH
Q ss_conf 7999998637876556301454542162112223368667358543207899985276--124556776
Q gi|254781037|r 154 IETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN--PKAQELVKV 220 (307)
Q Consensus 154 v~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d--~~i~~il~~ 220 (307)
.++-+.-..+|..=+++-.... +....... .++ +.+..-+-.+++..+++. +.+..++..
T Consensus 138 ~~~~~~~v~~g~Gi~~~p~~~~--~~~~~~~~--~~~---~~~~~~~~~~~l~~~~~~~~p~~~~f~~~ 199 (206)
T 1ixc_A 138 ATAALALTXAGAASSIVPASVA--AIRWPDIA--FAR---IVGTRVKVPISCIFRKEKQPPILARFVEH 199 (206)
T ss_dssp HHHHHHHHHTTSCBEEEEHHHH--TSCCTTEE--EEE---ECCTTCEEEEEEEEESSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEECHHHHH--HHHCCCEE--EEE---CCCCCCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf 9999999995996998008898--55229859--997---78988603899999699999899999999
No 51
>>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B} (A:89-306)
Probab=32.90 E-value=31 Score=14.95 Aligned_cols=175 Identities=13% Similarity=0.004 Sum_probs=86.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307)
Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307)
-+|+||+=.|-...+=...+.+..+. +|++++++.. +| ..+.|.+|++|+|+-.
T Consensus 5 G~lrIg~~~~~~~~~l~~~l~~f~~~---~P~i~l~i~~----~~-------------------~~~~l~~g~~D~~i~~ 58 (218)
T 3hhg_A 5 GVLSVDSAMPMVLHLLAPLAAKFNER---YPHIRLSLVS----SE-------------------GYINLIERKVDIALRA 58 (218)
T ss_dssp EEEEEEBCHHHHHHTHHHHHHHHHHH---CTTEEEEEEC----CS-------------------SSHHHHTTSSSCEEES
T ss_pred CCCEEECCHHHHHHHCCHHHHHHHHH---CCCCEEEEEE----CC-------------------HHHHHHCCCCEEEEEC
T ss_conf 75035302158988716132788986---8984599973----74-------------------7889874990399981
Q ss_pred CCCCCCCCC----CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCC---CCHHHH--HHHHHCCCCCHHHCCCH
Q ss_conf 343211101----221012223656831056652432433245673220475---302888--99842377310330767
Q gi|254781037|r 84 AKDMPTKLL----KGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSS---LRRKAL--LLRWRSDISVIDFRGKI 154 (307)
Q Consensus 84 lKDlP~~~~----~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS---~RR~aq--l~~~~p~l~~~~iRGNv 154 (307)
...-+..+. -.-.+..+.....| +-.+...++++|.....|.... .++..+ ........++.-.-.+.
T Consensus 59 ~~~~~~~~~~~~l~~~~~~~v~~~~~~---~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (218)
T 3hhg_A 59 GELDDSGLRARHLFDSRFRVIASPEYL---AKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHFTASSG 135 (218)
T ss_dssp CCCCCSSCEEEEEEEEEEEEEECHHHH---HHHCCCSSTTGGGGSCBCEESSTTTSCEEEEECSSSCEEECCCSSEESSH
T ss_pred CCCCCCCEEEEEEEEEEEEEEEECHHH---HHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCEECCCH
T ss_conf 788889848999630359999806477---64599899789614847985699860367887630576554543102689
Q ss_pred HHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf 999998637876556301454542162112223368667358543207899985276
Q gi|254781037|r 155 ETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN 211 (307)
Q Consensus 155 ~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307)
.+-+.-+.+|..=+++-....-.-+.- ......++.. ..+-+--+.+..+++.
T Consensus 136 ~~~~~~v~~g~gi~~~p~~~~~~~~~~-~~lv~~~~~~---~~~~~~~~~lv~~~~~ 188 (218)
T 3hhg_A 136 EILRSLCLSGCGIVCLSDFLVDNDIAE-GKLIPLLAEQ---TSDKTHPFNAVYYSDK 188 (218)
T ss_dssp HHHHHHHHTTSCEEEEEHHHHHHHHHH-TSSEECSTTT---BCCCEEEEEEEECSGG
T ss_pred HHHHHHHHCCCCEEECCHHHHHHHHHC-CCEEEECCCC---CCCCEEEEEEEEECCC
T ss_conf 999999981992899239999999977-9869956745---6787138999997998
No 52
>>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} (A:1-82,A:194-241)
Probab=32.43 E-value=32 Score=14.85 Aligned_cols=89 Identities=10% Similarity=0.177 Sum_probs=58.7
Q ss_pred CCCCEEEEECCCHHH-HHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 988289970798888-9999999999997408998338999997327411587556748622699999999870983699
Q gi|254781037|r 2 EKKPFRIGTRCSPLA-LAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA 80 (307)
Q Consensus 2 ~~~~i~IgtR~S~LA-l~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA 80 (307)
+.++|+||+...+-+ +| +.+...+++ .|+++|++.+. | --....||-+|+||.-
T Consensus 1 e~~~ikVG~~~~p~~~i~--~~v~~~~~~----~Gi~ieiv~F~---D----------------y~~pN~AL~~G~IDaN 55 (130)
T 1xs5_A 1 KDETVGVGVLSEPHARLL--EIAKEEVKK----QHIELRIVEFT---N----------------YVALNEAVMRGDILMN 55 (130)
T ss_dssp CCEEEEEEECSTTHHHHH--HHHHHHHHT----TTEEEEEEECS---C----------------HHHHHHHHHHTSSSEE
T ss_pred CCCEEEEEECCCCHHHHH--HHHHHHHHH----CCCEEEEEEEC---C----------------CHHHHHHHHCCCCCEE
T ss_conf 994499996279829999--999999997----49879999827---8----------------0668999975997666
Q ss_pred EEC----CCCCCCCCCCCCEEEEECCCCCCCEEEEECCC
Q ss_conf 740----34321110122101222365683105665243
Q gi|254781037|r 81 VHS----AKDMPTKLLKGLQISAYLPREDIRDVFISHTA 115 (307)
Q Consensus 81 VHS----lKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~ 115 (307)
+-- |+.--..-.-.|...+-+.=-+.--+++.|..
T Consensus 56 ~fQH~~yl~~~n~~~~~~L~~i~~t~i~py~Nvi~vr~~ 94 (130)
T 1xs5_A 56 FFQHVPHMQQFNQEHNGDLVSVGNVHVSAYANVLVVKRG 94 (130)
T ss_dssp EEEEHHHHHHHHHHHTCCEEEEEEEEEGGGCEEEEEETT
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECC
T ss_conf 247799999999867986899975154865799999050
No 53
>>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} (A:84-186)
Probab=31.48 E-value=34 Score=14.74 Aligned_cols=70 Identities=20% Similarity=0.183 Sum_probs=49.6
Q ss_pred EEEEECCC----CCCCCCCCCCEEECCCCC-HHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC
Q ss_conf 05665243----243324567322047530-2888998423773103307679999986378765563014545421
Q gi|254781037|r 108 DVFISHTA----QSLKDLALHSVIGTSSLR-RKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307)
Q Consensus 108 D~lv~~~~----~~l~~lp~~a~IGTsS~R-R~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307)
.+++.+++ +++++| .|.+||...-= -..+++...|+.+++.+ .|.+.-+..|.+|+.||.+....-+..+
T Consensus 7 ~~ivv~~~~~~i~~~~dl-~g~~v~v~~gs~~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~G~vda~i~d~~~~~~~ 81 (103)
T 1wdn_A 7 LLVMVKANNNDVKSVKDL-DGKVVAVKSGTGSVDYAKANIKTKDLRQF-PNIDNAYMELGTNRADAVLHDTPNILYF 81 (103)
T ss_dssp EEEEEETTCCSCSSSTTT-TTCEEEEETTSHHHHHHHHHCCCSEEEEE-SSHHHHHHHHHTTSCSEEEEEHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHH-CCCEEEEEECCCCCCCCCCCCCCCCCEEE-CCHHHHHHHHCCEEEEEEECCCHHHHHH
T ss_conf 699998888998997996-89999999553353100123344551365-7888986520351677996372655444
No 54
>>3e4r_A Nitrate transport protein; ALFA-beta protein, substrate-binding protein domain, alkanesulfonate-binding protein; HET: EPE; 2.01A {Xanthomonas axonopodis PV} (A:1-109,A:208-279)
Probab=29.79 E-value=36 Score=14.56 Aligned_cols=88 Identities=23% Similarity=0.285 Sum_probs=49.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974
Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307)
Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307)
..++|||.=...-+..-++.-. .+++. ..++++|++...+- -+..++|.+|++|++.-
T Consensus 28 ~~~~~ig~~~~~~~~~v~~~~g-~f~~e--~~G~~ve~~~f~~~-------------------~~~~~Al~sG~iD~~~~ 85 (181)
T 3e4r_A 28 PAQLRIGYQKAVSSLVLAKQHR-LLEQR--FPRTKITWVEFPAG-------------------PQLLEALNVGSIDLGGA 85 (181)
T ss_dssp CSEEEEEECTTCHHHHHHHHTT-HHHHH--CTTSEEEEEECSSH-------------------HHHHHHHHTTSCSEEEE
T ss_pred CCEEEEEEECCCCHHHHHHHHC-HHHHH--CCCCCEEEEECCCC-------------------HHHHHHHHCCCCEEEEE
T ss_conf 9759999636865799998738-79883--79983799977981-------------------99999998499719996
Q ss_pred CCCCCCC--CCCCC---CEEEEECCCCCCCEEEEECC
Q ss_conf 0343211--10122---10122236568310566524
Q gi|254781037|r 83 SAKDMPT--KLLKG---LQISAYLPREDIRDVFISHT 114 (307)
Q Consensus 83 SlKDlP~--~~~~~---l~i~a~~~R~d~rD~lv~~~ 114 (307)
. ..|. ....| ..+.......++.++++.+.
T Consensus 86 g--~~~~i~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 120 (181)
T 3e4r_A 86 G--DIPPLFAQAAGADLLYVGWVPPTGLTGGFFLSSR 120 (181)
T ss_dssp E--SHHHHHHHHTTCCEEEEEEECCCCCCCEEEEEEH
T ss_pred C--CHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECH
T ss_conf 6--2789999977998699997504677664367618
No 55
>>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} (A:1-84,A:183-291)
Probab=28.96 E-value=37 Score=14.47 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCC-----CCCCCCCEEEEECCCCCCCEEEEECC
Q ss_conf 999999987098369974034321-----11012210122236568310566524
Q gi|254781037|r 65 TEEIEKKLISGEIDCAVHSAKDMP-----TKLLKGLQISAYLPREDIRDVFISHT 114 (307)
Q Consensus 65 tkele~aLl~g~iDiAVHSlKDlP-----~~~~~~l~i~a~~~R~d~rD~lv~~~ 114 (307)
-.+|...|.+|++|++.=|.=-.. ..+-|++.|+|.-+-.-+-.+++.+.
T Consensus 42 P~~l~~~l~~g~~d~~~~ss~~y~~~~~~~~~~p~~~i~~~g~lp~~~av~vvr~ 96 (193)
T 2nxo_A 42 PEKLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVGCDGPLPFVFAVWAARR 96 (193)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHTGGGEEEEEEEEEEESSCCCEEEEEEEEEH
T ss_pred HHHHHHHHHCCCCCEEEHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEECCC
T ss_conf 9999999976998899522999998379867987302234687876532011135
No 56
>>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} (A:1-90,A:250-316)
Probab=28.96 E-value=37 Score=14.47 Aligned_cols=77 Identities=17% Similarity=0.269 Sum_probs=51.7
Q ss_pred HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEH-----HHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHH
Q ss_conf 423773103307679999986378765563014-----545421621122233686673585432078999852761245
Q gi|254781037|r 141 WRSDISVIDFRGKIETRLNKLNNNKAHAILLAY-----AGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQ 215 (307)
Q Consensus 141 ~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~-----Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~ 215 (307)
.+|.+.++ -..+....|+++.+++.|++++-. ||....||.....|.....+ +.-.-||..|+++.+ .
T Consensus 30 ~~P~i~CV-~~~s~~dCi~aI~~~eADavtlDgg~vy~Agk~~y~L~PV~aE~Yg~~e-----~~~y~~vv~r~~~~~-~ 102 (157)
T 2d3i_A 30 ERISLTCV-QKATYLDCIKAIANNEADAISLDGGQVFEAGLAPYKLKPIAAEVYEHTE-----GSTTHAVVARDDNKV-E 102 (157)
T ss_dssp SSSEEEEE-ECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCCEEEEEEEBCCTT-----CCBSCEEEECSSTTH-H
T ss_pred CCCCEEEE-ECCCHHHHHHHHHCCCCCEEEECHHHHHHHCCCCCCCEEEEEECCCCCC-----CCCECEEEECCCCCH-H
T ss_conf 79865988-5899999999986699888984759988612465788788872003778-----884545897685338-9
Q ss_pred HHHHHHCCH
Q ss_conf 567762397
Q gi|254781037|r 216 ELVKVINHE 224 (307)
Q Consensus 216 ~il~~Ind~ 224 (307)
-|.+.||-.
T Consensus 103 ~i~~~l~~~ 111 (157)
T 2d3i_A 103 DIWSFLSKA 111 (157)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 57
>>2j01_S 50S ribosomal protein L18; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (S:)
Probab=27.88 E-value=39 Score=14.35 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=32.6
Q ss_pred EEEEEEECCCCCEEEEEEEE-------CCHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999986998789999984-------3988899999999999997060563
Q gi|254781037|r 260 YFYGIVLASDGKIFHEVSRN-------GNRCDAINIGRDAAQYIRFISNKNV 304 (307)
Q Consensus 260 ~l~a~v~s~DG~~~i~~~~~-------g~~~~a~~LG~~la~~Ll~~g~k~i 304 (307)
++.++|.++++...+..--+ .+..-+..+|..+|+..++.|-.++
T Consensus 34 ~i~aqvid~~~~~~lasasT~e~~~~~~n~~Aa~~vG~~la~r~~~~gi~~v 85 (112)
T 2j01_S 34 HIYAQIIDDEKGVTLVSASSLALKLKGNKTEVARQVGRALAEKALALGIKQV 85 (112)
T ss_dssp CBCEEEEETTTTEEEEEECSTTTCCCSCHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred EEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 1799999879883899861333222465199999999999999998699889
No 58
>>3k4u_A Binding component of ABC transporter; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: LYS; 2.62A {Wolinella succinogenes} (A:76-198)
Probab=27.15 E-value=40 Score=14.27 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=45.3
Q ss_pred CCCCCCC-CCCEEECCCC-CHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC
Q ss_conf 2433245-6732204753-02888998423773103307679999986378765563014545421
Q gi|254781037|r 116 QSLKDLA-LHSVIGTSSL-RRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307)
Q Consensus 116 ~~l~~lp-~~a~IGTsS~-RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307)
++++++. ++.+||+.+- --..+++..+|+.+++. -.+.+.-+..|.+|..|+++.-..-+.-+
T Consensus 31 ~~~~dl~~~~~~v~v~~gs~~~~~l~~~~~~~~i~~-~~~~~~~~~~l~~grvDa~~~d~~~~~~~ 95 (123)
T 3k4u_A 31 KSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKT-YDTEAEAVQEVLNGKADXFIFDLPFNVAF 95 (123)
T ss_dssp CSGGGGCCSSCEEEEETTSHHHHHHHHHCSSSEEEE-ESSHHHHHHHHHSSSSEEEEEEHHHHHHH
T ss_pred CCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEE-EECCCHHHHHHHCCCCEEECCCCHHHHHH
T ss_conf 776775044543234641123256665245432001-32232778998669832323310456655
No 59
>>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} (A:1-90,A:250-332)
Probab=26.63 E-value=41 Score=14.21 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=44.8
Q ss_pred HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEH-----HHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 423773103307679999986378765563014-----545421621122233686673585432078999852761
Q gi|254781037|r 141 WRSDISVIDFRGKIETRLNKLNNNKAHAILLAY-----AGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNP 212 (307)
Q Consensus 141 ~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~-----Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~ 212 (307)
.+|.+.++ -..+....|+++.+++.|++++-. ||....||.....|.....+ +.=.=||..|+++.
T Consensus 30 ~~P~i~CV-~~~s~~dCi~~I~~~~AD~v~lD~~~vy~Ag~~~y~L~PV~aE~Y~~~e-----~~~yhaVv~R~~~~ 100 (173)
T 1iej_A 30 ERISLTCV-QKATYLDCIKAIANNEADAITLDGGQVFEAGLAPYKLKPIAAEVYEHTE-----GSTTHAVVARDDNK 100 (173)
T ss_dssp SSEEEEEE-ECSSHHHHHHHHHTTSCCBEEECHHHHHHHTSTTTCCEEEEEEEEECSS-----SEESCEEEECSSTT
T ss_pred CCCCEEEE-ECCCHHHHHHHHHCCCCCEEEECHHHHHHHCCCCCCCEEEEEECCCCCC-----CCCECEEEECCCCC
T ss_conf 79973877-2799999999997699888996818977421465799998984026888-----88414389788504
No 60
>>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A (A:1-103,A:211-253)
Probab=26.52 E-value=41 Score=14.20 Aligned_cols=88 Identities=10% Similarity=0.047 Sum_probs=61.3
Q ss_pred HHHCCCCCHHHCCCHHHHHHHHHCC-CCCEEEEE-HHHHHHCCCCCCCCCCCCHHHC---CCCCCCCEEEEEEECCCCHH
Q ss_conf 8423773103307679999986378-76556301-4545421621122233686673---58543207899985276124
Q gi|254781037|r 140 RWRSDISVIDFRGKIETRLNKLNNN-KAHAILLA-YAGIKRLKKEKVIKEILNIEDF---PPSPGQGAICIETHVNNPKA 214 (307)
Q Consensus 140 ~~~p~l~~~~iRGNv~TRl~Kl~~g-~~DaiilA-~Agl~RL~l~~~i~~~l~~~~~---~PA~gQGaIaIe~r~~d~~i 214 (307)
...++++|.-..|+=..-+.||..| ..|-++++ ...+.|+.-... .+.+++..+ .++.-|.+..|-.. +|++.
T Consensus 45 EketGikV~~~~~~s~~~~~kl~ag~~~Dvv~~~d~~~~~~l~~~Gl-l~pl~~~~i~nN~~~~~~~~~~~~~~-~~~~~ 122 (146)
T 3gzg_A 45 EKATGTPVRVSYAASSALARQIEQGAPADVFLSADLEWMDYLQQHGL-VLPAQRHNLLGNHDAIVYPVAALKNS-NNPAT 122 (146)
T ss_dssp HHHHSCCEEEEEECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTS-SCGGGEEEEEEESCCEEEEEEECTTC-CCTTH
T ss_pred HHHHCCEEEEEECCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCE-EEECCCCCCCCCCEEEEEEEEEECCC-CCHHH
T ss_conf 88539779999787799999996388866999542455788753020-12102222223356878769998899-99999
Q ss_pred HHHHHHHCCHHHHHH
Q ss_conf 556776239788888
Q gi|254781037|r 215 QELVKVINHEDTWDS 229 (307)
Q Consensus 215 ~~il~~Ind~~T~~~ 229 (307)
...+.-|.-++.+.-
T Consensus 123 ~~f~~~~~~~~~~~~ 137 (146)
T 3gzg_A 123 AAFVSWLGSKPAKAI 137 (146)
T ss_dssp HHHHHHTTSHHHHHH
T ss_pred HHHHHHHCCHHHHHH
T ss_conf 999999789999999
No 61
>>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermophilic bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus HB8} (A:81-171)
Probab=26.04 E-value=42 Score=14.14 Aligned_cols=59 Identities=10% Similarity=0.136 Sum_probs=37.3
Q ss_pred EEEECCCCCCCCCCCCCEEECCCCCHHHHH--HHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 566524324332456732204753028889--9842377310330767999998637876556301
Q gi|254781037|r 109 VFISHTAQSLKDLALHSVIGTSSLRRKALL--LRWRSDISVIDFRGKIETRLNKLNNNKAHAILLA 172 (307)
Q Consensus 109 ~lv~~~~~~l~~lp~~a~IGTsS~RR~aql--~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA 172 (307)
+|+++. .+++|+ +.+|+.++.-+.+.+ +.+.++... ++=+-++-...+..|++||.++-
T Consensus 4 ~l~sk~--p~~~l~-~~~Ial~~~s~TS~~Llki~~~~~~~--~~~~f~~i~~~~~~~~~DagLlI 64 (91)
T 2czl_A 4 LVVARG--PLQALE-GLRVAVPGRHTTAYFLLSLYAQGFVP--VEVRYDRILPMVAQGEVEAGLII 64 (91)
T ss_dssp EEEESS--CCSCCT-TCEEEESCTTSHHHHHHHHHCSSCEE--EECCGGGHHHHHHTTSSSEEEEC
T ss_pred EEECCC--CHHHHC-CCEEEECCCCCHHHHHHHHHHHHCCC--CCCCCCCCCCHHHCCCCCCEEEC
T ss_conf 997679--967817-98698786646899999999876268--88870103405553888851650
No 62
>>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima} (A:)
Probab=25.86 E-value=42 Score=14.12 Aligned_cols=176 Identities=13% Similarity=0.077 Sum_probs=96.9
Q ss_pred CEEEEECCCHHH-H-HHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 289970798888-9-99999999999740899833899999732741158755674862269999999987098369974
Q gi|254781037|r 5 PFRIGTRCSPLA-L-AHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307)
Q Consensus 5 ~i~IgtR~S~LA-l-~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307)
++|+++=-++=. . ...+..++.+++..+ -.+.+++.+-.+.|. -+|.-+++..|.+|+++-
T Consensus 10 ~l~~a~~~p~~~~~~~~~~~fa~~v~e~t~-G~i~i~i~~~g~l~~----------------~~e~~~~v~~G~id~~~~ 72 (327)
T 2hpg_A 10 TLRFGHVLAPGEPYHQAFLKWAKAVEEKTN-GDVRIEVFPSSQLGV----------------EEDIIEQIRXGAPVGWNT 72 (327)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHHHHHHHTT-TSEEEEEECCCCSCC----------------CCCHHHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEEECCCCCCC----------------HHHHHHHHHCCCCEEEEE
T ss_conf 999978889989799999999999999759-929999966886688----------------799999997699607964
Q ss_pred CC------------CCCCCCCC---------------------------------CCCEEEEECCCCCCCEEEEECC-CC
Q ss_conf 03------------43211101---------------------------------2210122236568310566524-32
Q gi|254781037|r 83 SA------------KDMPTKLL---------------------------------KGLQISAYLPREDIRDVFISHT-AQ 116 (307)
Q Consensus 83 Sl------------KDlP~~~~---------------------------------~~l~i~a~~~R~d~rD~lv~~~-~~ 116 (307)
|. -++|-..+ .|+...++... .++.++.+++ -.
T Consensus 73 ~~~~~~~~~p~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~-g~~~~~~~~~pi~ 151 (327)
T 2hpg_A 73 DSARLGXYVKDIGVXNLAYFIDFXGAKTPEEAIEVLKKIKQSPTXQKWLKELEQRFGIKVLSFYWV-QGYRHFVTNKPIR 151 (327)
T ss_dssp EHHHHTTTSGGGGGGGSTTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEE-EEEEEEEESSCCS
T ss_pred CCCCCCCEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECC-CCCCEECCCCCCC
T ss_conf 232014400002433565235655558899999999998638679999999998629851323305-8722002565667
Q ss_pred CCCCCCCCCEEECC-CC--CHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 43324567322047-53--0288899842377310330767999998637876556301454542162112223368667
Q gi|254781037|r 117 SLKDLALHSVIGTS-SL--RRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIED 193 (307)
Q Consensus 117 ~l~~lp~~a~IGTs-S~--RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~ 193 (307)
+++|| +|.+|-+. |+ .+..+.. -..++.-...-=..-|..|..||.....+.+...++.+...++..
T Consensus 152 s~~Dl-kG~kiRv~~~~~~~~~~~~~------Ga~pv~i~~~evy~aLq~G~vDg~~~~~~~~~~~~~~ev~~~~~~--- 221 (327)
T 2hpg_A 152 KPEDL-NGLRIRTPGAPAWQESIRSL------GAIPVAVNFGEIYTAVQTRAVDGAELTYANVYNGGLYEVLKYXSE--- 221 (327)
T ss_dssp SGGGG-TTCEEECCSSHHHHHHHHHH------TSEEECCCGGGHHHHHHTTSCSEEEECHHHHHHTTGGGTCCEEEE---
T ss_pred CCHHH-CCCCEECCCCHHHHHHHHHC------CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCEECCEEEE---
T ss_conf 82001-12556603766777776524------665445676531057887665521114411210330113231341---
Q ss_pred CCCCCCCCEEEEEEECC
Q ss_conf 35854320789998527
Q gi|254781037|r 194 FPPSPGQGAICIETHVN 210 (307)
Q Consensus 194 ~~PA~gQGaIaIe~r~~ 210 (307)
+..+.....+.+.++
T Consensus 222 --~~~~~~~~~~~~n~~ 236 (327)
T 2hpg_A 222 --TGHFLLINFEIVSAD 236 (327)
T ss_dssp --EEEEEEEEEEEEEHH
T ss_pred --CCCCCHHHHHHHHHH
T ss_conf --320110368876999
No 63
>>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} (A:95-216)
Probab=25.62 E-value=42 Score=14.09 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=45.6
Q ss_pred CCCCCCCCCCEEECCCCCHH-HHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC
Q ss_conf 24332456732204753028-88998423773103307679999986378765563014545421
Q gi|254781037|r 116 QSLKDLALHSVIGTSSLRRK-ALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307)
Q Consensus 116 ~~l~~lp~~a~IGTsS~RR~-aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307)
.++.+|. |.+||+.+---- .+++...|+.+++.. .+.+.-+..|.+|+.|+++.-...+..+
T Consensus 31 ~~~~dl~-g~~i~v~~gs~~~~~l~~~~~~~~~~~~-~~~~~~l~~l~~G~vDa~v~d~~~~~~~ 93 (122)
T 2iee_A 31 KTLKDLK-GKKAAGAATTVYXEVARKYGAKEVIYDN-ATNEQYLKDVANGRTDVILNDYYLQTLA 93 (122)
T ss_dssp SSGGGGT-TCEEESCTTSHHHHHHHHTTCEEEECSS-CCHHHHHHHHHHTSSCEEEEEHHHHHHH
T ss_pred CEEECCC-CCCCCCCCHHHHHHHHHHHHCCEEEECC-CCHHHHHHHHHCCCEEEEECHHHHHHHH
T ss_conf 2000012-2222100036689999875124165112-5569888898789735553155788999
No 64
>>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B} (B:)
Probab=25.28 E-value=43 Score=14.05 Aligned_cols=175 Identities=14% Similarity=0.020 Sum_probs=89.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307)
Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307)
-+|+||+-.|--..+-...+.+..++ +|++++++.. +| ..+.|.+|++|+|+-.
T Consensus 7 G~lrIg~~~~~~~~~l~~~l~~f~~~---~P~v~i~i~~----~~-------------------~~~~L~~~~~D~~i~~ 60 (213)
T 3hhf_B 7 GVLSVDSAXPXVLHLLAPLAAKFNER---YPHIRLSLVS----SE-------------------GYINLIERKVDIALRA 60 (213)
T ss_dssp EEEEEEECHHHHHHTHHHHHHHHHHH---CTTEEEEEEC----CS-------------------TTHHHHTTSSSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH---CCCEEEEEEE----CC-------------------CHHHHHHHCCCEEEEE
T ss_conf 69999358899999999999999998---8296999997----68-------------------5115555124014650
Q ss_pred CCCCCCCCCC----CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECC---CCCHHHH--HHHHHCCCCCHHHCCCH
Q ss_conf 3432111012----2101222365683105665243243324567322047---5302888--99842377310330767
Q gi|254781037|r 84 AKDMPTKLLK----GLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTS---SLRRKAL--LLRWRSDISVIDFRGKI 154 (307)
Q Consensus 84 lKDlP~~~~~----~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTs---S~RR~aq--l~~~~p~l~~~~iRGNv 154 (307)
...-+..+.. ...+..+..++.| +-.+...++++|.....|... +.|.... +..........-.-.+.
T Consensus 61 ~~~~~~~~~~~~l~~~~~~~v~~~~~~---~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (213)
T 3hhf_B 61 GELDDSGLRARHLFDSRFRVIASPEYL---AKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHFTASSG 137 (213)
T ss_dssp C--CCSSEEEEEEEEECEEEEECHHHH---HHHCCCSSGGGGGGSCBCEESSCGGGGEEEEECTTSCEEECCCSSEESSH
T ss_pred CCCCCEEEEEEECCCEEEEECCCHHHH---HHCCCCCCHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEECCH
T ss_conf 677511588741242568851463579---85399998357406877983488750357776525763023571787789
Q ss_pred HHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf 999998637876556301454542162112223368667358543207899985276
Q gi|254781037|r 155 ETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN 211 (307)
Q Consensus 155 ~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307)
++-+.-+.+|..=+++.....-..+.-. .....++... .+-.-.+.+.++++.
T Consensus 138 ~~~~~~v~~g~gi~~~p~~~~~~~~~~~-~lv~~~~~~~---~~~~~~~~l~~~~~~ 190 (213)
T 3hhf_B 138 EILRSLCLSGCGIVCLSDFLVDNDIAEG-KLIPLLAEQT---SDKTHPFNAVYYSDK 190 (213)
T ss_dssp HHHHHHHHTTSCBEEEEHHHHHHHHHHT-SSEEECTTTB---CCCCEEEEEEEEGGG
T ss_pred HHHHHHHHCCCEEEECCHHHHHHHHCCC-CEEEECCCCC---CCCCEEEEEEEECCC
T ss_conf 9999999869927965599998663089-7899577667---787208999997998
No 65
>>3fd3_A Chromosome replication initiation inhibitor protein; structural genomics, LYSR, PSI-2, protein structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str} (A:)
Probab=22.85 E-value=48 Score=13.75 Aligned_cols=169 Identities=11% Similarity=-0.083 Sum_probs=77.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403
Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307)
Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307)
+++||+=.|-...+-...+.+-.+. | ++++++..-. +.++.+.|.+|++|+|+...
T Consensus 3 ~lrIg~~~~~~~~~lp~~l~~f~~~-~---Pv~i~l~~~~--------------------~~~~~~~l~~g~~Dlai~~~ 58 (208)
T 3fd3_A 3 TLNIATNADSLGTWFLDAVSKFTGG-S---DYLVNIAVDD--------------------QDHTVEWLRGGRVLAAVTAH 58 (208)
T ss_dssp EEEEEECHHHHTTTHHHHHHHHHHT-S---SCEEEEEECC--------------------SSCHHHHHHTTSCSEEEESC
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHH-C---CCEEEEEEEC--------------------CHHHHHHHHCCCEEEEEECC
T ss_conf 7899877387898899999999997-9---7979999945--------------------66278887579759999838
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEECCC--------CCCCCCCCCCEEE-CCCCCHHHHHHHHH---CCCCCHHHCC
Q ss_conf 4321110122101222365683105665243--------2433245673220-47530288899842---3773103307
Q gi|254781037|r 85 KDMPTKLLKGLQISAYLPREDIRDVFISHTA--------QSLKDLALHSVIG-TSSLRRKALLLRWR---SDISVIDFRG 152 (307)
Q Consensus 85 KDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~--------~~l~~lp~~a~IG-TsS~RR~aql~~~~---p~l~~~~iRG 152 (307)
..-+..+ .......++.=++++... ...+.+.....+. .++.++........ ......-.-.
T Consensus 59 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (208)
T 3fd3_A 59 DKPVQGC------RVTPLGVLRYHATASPDFXARHFADGVTPAALARAPGLTFNQKDRLQASWIRTALGEDVSYPTHWLP 132 (208)
T ss_dssp CSCCTTC------EEEEEEEEEEEEEECHHHHHHHCTTCSCHHHHTTSCEEESSTTCCHHHHHHHHHHSSCCCCCEEECC
T ss_pred CCCCCCE------EEEEEEEEEEEEEECHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEC
T ss_conf 9999986------9999460279999834999863799999999950863322566641135566414766544337888
Q ss_pred CHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf 67999998637876556301454542162112223368667358543207899985276
Q gi|254781037|r 153 KIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN 211 (307)
Q Consensus 153 Nv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307)
+..+-+.-+..|..-+++-....-.-+.- .... .+.+ .-+--+.+..+++.
T Consensus 133 ~~~~~~~~~~~g~g~~~~p~~~~~~~~~~-g~l~-~l~~------~~~~~~~l~~~~~~ 183 (208)
T 3fd3_A 133 STDGFVKASLAGXGWGLNPVQLVAEHLAA-GRLV-ELXP------GTPLDIPLYWQVNR 183 (208)
T ss_dssp CHHHHHHHHHTTSCBEEEEHHHHHHHHHH-TSSE-ESST------TCCEEEEEEEEECT
T ss_pred CHHHHHHHHHHCCCEEECCHHHHHHHHHC-CCEE-EECC------CCCCEEEEEEECCC
T ss_conf 89999999993994774859999999878-9868-9799------98661547976477
No 66
>>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} (A:89-188)
Probab=22.72 E-value=48 Score=13.74 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=44.1
Q ss_pred CCCCCCCCCCEEECCCCCHHHHHHH-HH--CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC
Q ss_conf 2433245673220475302888998-42--3773103307679999986378765563014545421
Q gi|254781037|r 116 QSLKDLALHSVIGTSSLRRKALLLR-WR--SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307)
Q Consensus 116 ~~l~~lp~~a~IGTsS~RR~aql~~-~~--p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307)
++++|| +|.+||+.+-=-..+... .. +++++..+ .+.+.-+..|.+|+.||.+....-+..+
T Consensus 16 ~s~~dl-~Gk~i~v~~gt~~~~~l~~~~~~~~~~~~~~-~~~~~~~~al~~g~vDa~~~~~~~~~~~ 80 (100)
T 1lst_A 16 PTLESL-KGKHVGVLQGSTQEAYANDNWRTKGVDVVAY-ANQDLIYSDLTAGRLDAALQDEVAASEG 80 (100)
T ss_dssp SSHHHH-TTCEEEEETTSHHHHHHHHHTGGGTCEEEEE-SSHHHHHHHHHTTSCSEEEEEHHHHHHH
T ss_pred CCHHHH-CCCEEEEECCCHHHHHHHHHHCCCCCCEEEE-CCHHHHHHHHHCCCCEEEEECHHHHHHH
T ss_conf 998997-8998999758648888888741456650540-8989999999759831999538999999
No 67
>>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D (A:88-246)
Probab=22.69 E-value=48 Score=13.73 Aligned_cols=58 Identities=9% Similarity=0.097 Sum_probs=46.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974
Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307)
Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307)
.+++++|.=+-.=+.++|+.+...|+++ +++++++...+. .+=.+|-+|++|+..-
T Consensus 77 ~~~v~~~~~~W~~~~~~t~i~~~iLe~~----Gy~ve~~~~~~~--------------------~~~~~l~~Gd~D~~~~ 132 (159)
T 2b4l_A 77 GDKINLAYVAWDSEIASTNVIGKVLEDL----GYEVTLTQVEAG--------------------PMWTAIATGSADASLS 132 (159)
T ss_dssp SCEEEEEECCCHHHHHHHHHHHHHHHHH----TCEEEEEECCTT--------------------HHHHHHHHTSSSEEEE
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHC----CCCCEEEECCHH--------------------HHHHHHHCCCCEEEEC
T ss_conf 7760664248762799999999999985----997447545628--------------------8999997799728874
Q ss_pred CC
Q ss_conf 03
Q gi|254781037|r 83 SA 84 (307)
Q Consensus 83 Sl 84 (307)
.+
T Consensus 133 ~W 134 (159)
T 2b4l_A 133 AW 134 (159)
T ss_dssp EE
T ss_pred CC
T ss_conf 44
No 68
>>1ev7_A Type IIE restriction endonuclease NAEI; APO-NAEI, topoisomerase, helix- turn-helix, CAP, hydrolase; 2.38A {Lechevalieria aerocolonigenes} (A:1-170)
Probab=22.69 E-value=33 Score=14.81 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=25.3
Q ss_pred CCCCCCCCCCC-HHHCCCCCCCCEEEEEEECCCCHH
Q ss_conf 62112223368-667358543207899985276124
Q gi|254781037|r 180 KKEKVIKEILN-IEDFPPSPGQGAICIETHVNNPKA 214 (307)
Q Consensus 180 ~l~~~i~~~l~-~~~~~PA~gQGaIaIe~r~~d~~i 214 (307)
|..-.+..-+. .+||+|.-+||-+|+.+..+|...
T Consensus 91 G~dVD~K~s~~~g~WmiP~E~~~~~cllv~add~~a 126 (170)
T 1ev7_A 91 GVQVDCKFSMSQGAWMLPPESIGHICLVIWASDQQC 126 (170)
T ss_dssp TEEEEEEEESSTTCCCBCGGGTTSEEEEEEEETTTT
T ss_pred CCCEEEEECCCCCCEECCHHHCCCEEEEEEECCCCC
T ss_conf 752135751567861457665585479998546654
No 69
>>3e4r_A Nitrate transport protein; ALFA-beta protein, substrate-binding protein domain, alkanesulfonate-binding protein; HET: EPE; 2.01A {Xanthomonas axonopodis PV} (A:110-207)
Probab=22.10 E-value=49 Score=13.66 Aligned_cols=71 Identities=11% Similarity=-0.024 Sum_probs=45.4
Q ss_pred EEEECCC---CCCCCCCCCCEEECCCCCHHHHHHHH-H-----CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC
Q ss_conf 5665243---24332456732204753028889984-2-----3773103307679999986378765563014545421
Q gi|254781037|r 109 VFISHTA---QSLKDLALHSVIGTSSLRRKALLLRW-R-----SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307)
Q Consensus 109 ~lv~~~~---~~l~~lp~~a~IGTsS~RR~aql~~~-~-----p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307)
+++.+.. ++++|| .|.+||+.+-==...+... . +.-.+...-.+.+..+.-|.+|+.||.+.-..-+..+
T Consensus 5 ~ivv~~ds~i~~~~DL-~Gk~vgv~~gs~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~al~~g~vDa~~~~~p~~~~~ 83 (98)
T 3e4r_A 5 TILVPSKSALRTVADL-KGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQVDAWAIWDPWYSAL 83 (98)
T ss_dssp EEEEETTCCCCSGGGG-TTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTCCSEEEEETTHHHHH
T ss_pred EEEEECCCCCCCHHHH-CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf 8999346665554452-587210133320377777689984025444321015825777888612464388414799999
Q ss_pred C
Q ss_conf 6
Q gi|254781037|r 180 K 180 (307)
Q Consensus 180 ~ 180 (307)
-
T Consensus 84 ~ 84 (98)
T 3e4r_A 84 T 84 (98)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 70
>>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (B:790-839,B:965-1102)
Probab=22.06 E-value=40 Score=14.26 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=7.3
Q ss_pred CEEEEEHHHHHHC
Q ss_conf 5563014545421
Q gi|254781037|r 167 HAILLAYAGIKRL 179 (307)
Q Consensus 167 DaiilA~Agl~RL 179 (307)
||||+-+|.++|.
T Consensus 37 Daiiin~~~~erg 49 (188)
T 3h0g_B 37 DSIIMNQASIDRG 49 (188)
T ss_dssp SCEEEEHHHHTTT
T ss_pred HHHHCCHHHHHCC
T ss_conf 3221133442135
No 71
>>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} (A:187-268)
Probab=22.00 E-value=33 Score=14.75 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=47.2
Q ss_pred CCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
Q ss_conf 3585432078999852761245567762397888887889999987177648852899999999899
Q gi|254781037|r 194 FPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLY 260 (307)
Q Consensus 194 ~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~ 260 (307)
+.--.|+|+-|...+.......-.++.+...+.......|-.+|+.|.--.-.++=+++.-..+.++
T Consensus 11 ~~~~lG~G~fG~Vy~~~~~~~~vavk~~~~~~~~~~~~~Ei~~l~~l~HpnIV~l~g~~~~~~~~l~ 77 (82)
T 1k9a_A 11 LLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY 77 (82)
T ss_dssp EEEEEEECSSEEEEEEEETTEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEE
T ss_pred EEEEEEECCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEE
T ss_conf 8689952799899999999989999998857779999999999864579988999889982798089
No 72
>>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Archaeoglobus fulgidus dsm 4304} (A:89-178)
Probab=21.79 E-value=50 Score=13.62 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=41.2
Q ss_pred EEEECCCCCCCCCCCCCEEECCCCCHHHHHHH--HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEE
Q ss_conf 56652432433245673220475302888998--4237731033076799999863787655630
Q gi|254781037|r 109 VFISHTAQSLKDLALHSVIGTSSLRRKALLLR--WRSDISVIDFRGKIETRLNKLNNNKAHAILL 171 (307)
Q Consensus 109 ~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~--~~p~l~~~~iRGNv~TRl~Kl~~g~~Daiil 171 (307)
.+|+++..++ ++.+|+.+..+-.|.++. ..|+..++.++ -+.=+..+.+|++||-++
T Consensus 4 lvva~~~~~l----~~~~iAvPG~~TTA~LLlrl~~~~~~~v~~~--FdeI~~AV~~G~vDAGli 62 (90)
T 1zbm_A 4 VVVAKSEISL----DGKRIAVPGRYTTANLLLKLAVEDFEPVEXP--FDRIIQAVLDEEVDAGLL 62 (90)
T ss_dssp EEEESSCCCC----TTCEEEESCTTSHHHHHHHHHCSSCEEEECC--GGGHHHHHHTTSSSEEEE
T ss_pred EEEECCCCCC----CCCCEEECCCCHHHHHHHHHHHHHCCCCCCC--HHHCCHHHHCCCCCCCCC
T ss_conf 9998898876----7883785572508899999998743544578--422432454176653221
No 73
>>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} (A:)
Probab=21.05 E-value=52 Score=13.52 Aligned_cols=82 Identities=20% Similarity=0.046 Sum_probs=52.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCC-----CH------HHCCCHHHHHHHHH
Q ss_conf 99882899707988889999999999997408998338999997327411587-----55------67486226999999
Q gi|254781037|r 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNR-----TL------TEIGGKGLFTEEIE 69 (307)
Q Consensus 1 M~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~-----~l------~~~g~kg~Ftkele 69 (307)
|++|++.||.=+......++....+.|.+... +..++++..-.--+..+-. ++ -...++|-||-|+-
T Consensus 1 mmrk~~ii~NwKmn~~~~~~~~~~~~l~~~~~--~~~v~i~iaP~~~~L~~~~~~~~s~i~igAQnv~~~~~Ga~TGevS 78 (259)
T 2i9e_A 1 MARKFVVGGNWKMNGDKKQINEIIGFLKSGPL--NQDTEVVVGVPAIYLELVRTCVPASIGVAAQNCYKVPKGAFTGEIS 78 (259)
T ss_dssp -CCCEEEEEECCBCCCHHHHHHHHHHHHHSCC--CTTEEEEEEECGGGHHHHHHHSCTTSEEEESCCCSSSSBSCTTCCC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC--CCCCEEEEECCHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf 99980899861017899999999999971655--8998699979878999999731451776222111211034565654
Q ss_pred HHHHCCC-CEEEE--ECC
Q ss_conf 9987098-36997--403
Q gi|254781037|r 70 KKLISGE-IDCAV--HSA 84 (307)
Q Consensus 70 ~aLl~g~-iDiAV--HSl 84 (307)
..+|..- ++.+. ||=
T Consensus 79 ~~~L~d~G~~~vliGHSE 96 (259)
T 2i9e_A 79 PAMIKDVGADWVILGHSE 96 (259)
T ss_dssp HHHHHHTTCCEEEESCHH
T ss_pred HHHHHHCCCCCEECCCHH
T ss_conf 999987085302202431
No 74
>>1ii5_A Hypothetical protein SLR1257; membrane protein; HET: GLU; 1.60A {Synechocystis SP} (A:1-78,A:199-233)
Probab=20.94 E-value=52 Score=13.51 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=11.0
Q ss_pred HHHHHHCCCCEEEEECCC
Q ss_conf 999987098369974034
Q gi|254781037|r 68 IEKKLISGEIDCAVHSAK 85 (307)
Q Consensus 68 le~aLl~g~iDiAVHSlK 85 (307)
+-.+|.+|++|+++.++=
T Consensus 57 ll~~L~~GkiDivi~~is 74 (113)
T 1ii5_A 57 GITAVAEGELDILIGPIS 74 (113)
T ss_dssp HHHHHHTTSCSEEEEEEE
T ss_pred HHHHHHCCCCCEEECCCC
T ss_conf 999997699788841561
Done!