HHsearch results for GI: 254781037 and protein with PDBid: 1xt8_A

>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=93.05  E-value=0.42  Score=26.09  Aligned_cols=142  Identities=11%  Similarity=0.082  Sum_probs=75.4

Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCCCCHH-HHHHHHHC
Q ss_conf             999987098369974034321110122101222365683105665243---24332456732204753028-88998423
Q gi|254781037|r   68 IEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSSLRRK-ALLLRWRS  143 (307)
Q Consensus        68 le~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS~RR~-aql~~~~p  143 (307)
                      ...+|.+|++|+++.++-.-|. ......+.- +--.+ .-+++.+..   ++++||. |.+||...---. ..+....|
T Consensus        98 ~~~~l~~g~~d~~~~~~~~t~~-R~~~~~fs~-py~~~-~~~~~~~~~~~i~~~~dL~-g~~V~v~~g~~~~~~l~~~~~  173 (292)
T 1xt8_A           98 RVEFLKSNKVDIILANFTQTPQ-RAEQVDFCS-PYMKV-ALGVAVPKDSNITSVEDLK-DKTLLLNKGTTADAYFTQNYP  173 (292)
T ss_dssp             HHHHHHTTSCSEECSSCBCCHH-HHTTEEECC-CCEEE-EEEEEEETTCCCCSSGGGT-TSEEEEETTSHHHHHHHHHCT
T ss_pred             HHHHHHCCCCCCCCCCCCCCCC-HHCCCCCCC-CEEEC-CCEEEEECCCCCCCHHHHH-HCEEEEECCCHHHHHHHHHHH
T ss_conf             8999986997711355656711-210246675-34741-5137872245767477770-066775158589999997100


Q ss_pred             CCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHH
Q ss_conf             773103307679999986378765563014545421621122233686673585432078999852761245567
Q gi|254781037|r  144 DISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELV  218 (307)
Q Consensus       144 ~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il  218 (307)
                      +.+++.+. +.+.-++.|.+|++|+++.....+..+-....... +...   |..-+.-+++-.+++|+++.+.+
T Consensus       174 ~~~~v~~~-~~~~~~~~l~~G~vDa~~~d~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~iav~k~~~~L~~~l  243 (292)
T 1xt8_A          174 NIKTLKYD-QNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFK-MGIK---ELGNKDVIAPAVKKGDKELKEFI  243 (292)
T ss_dssp             TSEEEEES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEE-EEEE---EEEEEEEECCEEETTCHHHHHHH
T ss_pred             HHHHEEEC-CCCCHHHHHHCCCEEEEEECHHHHHHHHHHCCCCE-EECC---CCCCCCEEEEEEECCCHHHHHHH
T ss_conf             00000000-22201124436936999956999999999789978-9414---67877339999979999999999