HHsearch results for GI: 254781037 and protein with PDBid: 3mpk_A
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=92.90 E-value=0.5 Score=25.57 Aligned_cols=141 Identities=20% Similarity=0.190 Sum_probs=79.2
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC----CCCCCCCCCCEEECCCC-CHHHHHHH
Q ss_conf 99999987098369974034321110122101222365683105665243----24332456732204753-02888998
Q gi|254781037|r 66 EEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA----QSLKDLALHSVIGTSSL-RRKALLLR 140 (307)
Q Consensus 66 kele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~----~~l~~lp~~a~IGTsS~-RR~aql~~ 140 (307)
+++-.+|.+|++|++.--..+ |. ....+... .+=-....+++.+.. .++++|. |.+||+..- --...+..
T Consensus 82 ~~~~~~l~~g~~Di~~~~~~t-~~-r~~~~~~s--~p~~~~~~~~v~~~~~~~~~~~~~l~-g~~i~~~~g~~~~~~l~~ 156 (267)
T 3mpk_A 82 EELIAKLRSGEADMAGALFVN-SA-RESFLSFS--RPYVRNGMVIVTRQDPDAPVDADHLD-GRTVALVRNSAAIPLLQR 156 (267)
T ss_dssp HHHHHHHHHTSCSEEEEEECC-GG-GTTTEEEC--SCSEEECEEEEEESSTTSCSSGGGCT-TCEEEEETTCTHHHHHHH
T ss_pred HHHHHHHHCCCEEEEECCCCC-HH-HHHCCCCC--CCEECCCEEEEEECCCCCCCCHHHHC-CCCEEEECCCHHHHHHHH
T ss_conf 999998636966599647899-88-98407767--62130440454201443457988965-873055415405699997
Q ss_pred HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHH----HHCCCCCC-CCCCCCHHHCCCCCCCCEEEEEEECCCCHHH
Q ss_conf 423773103307679999986378765563014545----42162112-2233686673585432078999852761245
Q gi|254781037|r 141 WRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGI----KRLKKEKV-IKEILNIEDFPPSPGQGAICIETHVNNPKAQ 215 (307)
Q Consensus 141 ~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl----~RL~l~~~-i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~ 215 (307)
..|+.+++... |..+-+..|..|++|+.+.-..-+ ++.+..+. +....+ + . ..-+++-++++|+.+.
T Consensus 157 ~~~~~~i~~~~-~~~~~l~~L~~GrvDa~i~~~~~~~~~l~~~~~~~~~v~~~~~---~---~-~~~~~~~~~k~~~~L~ 228 (267)
T 3mpk_A 157 RYPQAKVVTAD-NPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALD---L---P-PAEIALATTRGQTELM 228 (267)
T ss_dssp HCTTSEEEEES-SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECS---S---C-CEEEEEEEETTCHHHH
T ss_pred HCCCCEEEEEC-CHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCEEEEECCC---C---C-CEEEEEEEECCCHHHH
T ss_conf 28874179980-6898778988798676842799999999838999769950467---7---7-5269999948999999
Q ss_pred HHHH
Q ss_conf 5677
Q gi|254781037|r 216 ELVK 219 (307)
Q Consensus 216 ~il~ 219 (307)
+++.
T Consensus 229 ~~in 232 (267)
T 3mpk_A 229 SILN 232 (267)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999