HHsearch results for GI: 254781037 and protein with PDBid: 3mpk_A

>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=92.90  E-value=0.5  Score=25.57  Aligned_cols=141  Identities=20%  Similarity=0.190  Sum_probs=79.2

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC----CCCCCCCCCCEEECCCC-CHHHHHHH
Q ss_conf             99999987098369974034321110122101222365683105665243----24332456732204753-02888998
Q gi|254781037|r   66 EEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA----QSLKDLALHSVIGTSSL-RRKALLLR  140 (307)
Q Consensus        66 kele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~----~~l~~lp~~a~IGTsS~-RR~aql~~  140 (307)
                      +++-.+|.+|++|++.--..+ |. ....+...  .+=-....+++.+..    .++++|. |.+||+..- --...+..
T Consensus        82 ~~~~~~l~~g~~Di~~~~~~t-~~-r~~~~~~s--~p~~~~~~~~v~~~~~~~~~~~~~l~-g~~i~~~~g~~~~~~l~~  156 (267)
T 3mpk_A           82 EELIAKLRSGEADMAGALFVN-SA-RESFLSFS--RPYVRNGMVIVTRQDPDAPVDADHLD-GRTVALVRNSAAIPLLQR  156 (267)
T ss_dssp             HHHHHHHHHTSCSEEEEEECC-GG-GTTTEEEC--SCSEEECEEEEEESSTTSCSSGGGCT-TCEEEEETTCTHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEECCCCC-HH-HHHCCCCC--CCEECCCEEEEEECCCCCCCCHHHHC-CCCEEEECCCHHHHHHHH
T ss_conf             999998636966599647899-88-98407767--62130440454201443457988965-873055415405699997


Q ss_pred             HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHH----HHCCCCCC-CCCCCCHHHCCCCCCCCEEEEEEECCCCHHH
Q ss_conf             423773103307679999986378765563014545----42162112-2233686673585432078999852761245
Q gi|254781037|r  141 WRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGI----KRLKKEKV-IKEILNIEDFPPSPGQGAICIETHVNNPKAQ  215 (307)
Q Consensus       141 ~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl----~RL~l~~~-i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~  215 (307)
                      ..|+.+++... |..+-+..|..|++|+.+.-..-+    ++.+..+. +....+   +   . ..-+++-++++|+.+.
T Consensus       157 ~~~~~~i~~~~-~~~~~l~~L~~GrvDa~i~~~~~~~~~l~~~~~~~~~v~~~~~---~---~-~~~~~~~~~k~~~~L~  228 (267)
T 3mpk_A          157 RYPQAKVVTAD-NPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALD---L---P-PAEIALATTRGQTELM  228 (267)
T ss_dssp             HCTTSEEEEES-SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECS---S---C-CEEEEEEEETTCHHHH
T ss_pred             HCCCCEEEEEC-CHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCEEEEECCC---C---C-CEEEEEEEECCCHHHH
T ss_conf             28874179980-6898778988798676842799999999838999769950467---7---7-5269999948999999


Q ss_pred             HHHH
Q ss_conf             5677
Q gi|254781037|r  216 ELVK  219 (307)
Q Consensus       216 ~il~  219 (307)
                      +++.
T Consensus       229 ~~in  232 (267)
T 3mpk_A          229 SILN  232 (267)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999