Query gi|254781037|ref|YP_003065450.1| porphobilinogen deaminase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 307 No_of_seqs 169 out of 2086 Neff 5.8 Searched_HMMs 23785 Date Wed Jun 1 00:45:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781037.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1gtk_A Porphobilinogen deamina 100.0 0 0 776.7 32.1 304 1-306 1-304 (313) 2 3ecr_A Porphobilinogen deamina 100.0 0 0 751.0 31.0 301 4-306 22-355 (364) 3 3gxa_A Outer membrane lipoprot 98.0 0.00071 3E-08 44.0 15.5 207 3-249 22-260 (275) 4 1p99_A Hypothetical protein PG 98.0 0.00021 8.6E-09 47.5 12.2 196 3-226 38-264 (295) 5 3ir1_A Outer membrane lipoprot 97.9 0.00023 9.6E-09 47.2 11.9 202 4-248 1-237 (245) 6 3k2d_A ABC-type metal ION tran 97.6 0.0015 6.3E-08 41.9 12.1 198 1-227 3-229 (237) 7 1xs5_A 29 kDa protein, membran 97.5 0.00059 2.5E-08 44.5 8.6 196 2-227 1-225 (241) 8 2ozz_A Hypothetical protein YH 97.4 0.0013 5.4E-08 42.4 9.4 170 34-231 42-219 (231) 9 2x26_A Periplasmic aliphatic s 97.0 0.006 2.5E-07 38.0 9.6 190 3-221 2-209 (308) 10 3hn0_A Nitrate transport prote 96.3 0.04 1.7E-06 32.7 9.6 143 3-176 4-154 (283) 11 2a5s_A N-methyl-D-aspartate re 95.8 0.068 2.9E-06 31.2 8.8 171 67-245 96-283 (284) 12 1wdn_A GLNBP, glutamine bindin 94.8 0.22 9.4E-06 27.8 9.2 186 3-219 2-201 (226) 13 3del_B Arginine binding protei 94.6 0.25 1E-05 27.6 10.4 208 3-245 10-240 (242) 14 2iee_A ORF2, probable ABC tran 94.3 0.29 1.2E-05 27.1 9.1 164 68-242 75-247 (271) 15 2v25_A Major cell-binding fact 94.0 0.34 1.4E-05 26.7 8.6 140 68-219 93-240 (259) 16 2vha_A Periplasmic binding tra 93.7 0.38 1.6E-05 26.4 12.9 192 3-224 16-229 (287) 17 3g41_A Amino acid ABC transpor 93.2 0.45 1.9E-05 25.9 9.7 186 1-219 7-211 (246) 18 1xt8_A Putative amino-acid tra 93.0 0.42 1.8E-05 26.1 7.5 142 68-218 98-243 (292) 19 3mpk_A Virulence sensor protei 92.9 0.5 2.1E-05 25.6 10.5 141 66-219 82-232 (267) 20 3hv1_A Polar amino acid ABC up 92.9 0.44 1.8E-05 26.0 7.4 205 3-241 20-248 (268) 21 3h7m_A Sensor protein; histidi 91.9 0.66 2.8E-05 24.8 9.3 148 68-227 62-214 (234) 22 2czl_A Hypothetical protein TT 91.9 0.46 1.9E-05 25.8 6.5 103 65-171 39-143 (272) 23 3ix1_A N-formyl-4-amino-5-amin 91.1 0.8 3.4E-05 24.3 10.8 149 68-223 47-216 (302) 24 2pyy_A Ionotropic glutamate re 90.8 0.86 3.6E-05 24.1 10.9 148 3-179 2-165 (228) 25 3ksx_A Nitrate transport prote 90.7 0.88 3.7E-05 24.0 8.4 149 4-179 29-192 (324) 26 1ii5_A Hypothetical protein SL 90.0 1 4.2E-05 23.6 11.5 153 2-180 2-170 (233) 27 2de3_A Dibenzothiophene desulf 88.0 1.4 5.8E-05 22.7 6.6 112 67-180 59-233 (365) 28 2o1m_A Probable amino-acid ABC 84.2 2.1 9E-05 21.5 8.5 208 4-243 16-244 (258) 29 3oxn_A Putative transcriptiona 82.2 2.6 0.00011 21.0 6.4 142 2-173 17-168 (241) 30 1zbm_A Hypothetical protein AF 79.9 3.1 0.00013 20.5 6.7 139 3-172 9-151 (280) 31 3l6g_A Betaine ABC transporter 79.0 3.3 0.00014 20.3 8.0 58 3-84 1-58 (256) 32 2rin_A Putative glycine betain 77.9 3.5 0.00015 20.1 7.3 190 2-221 5-230 (298) 33 1sw5_A Osmoprotection protein 76.5 3.9 0.00016 19.8 5.2 59 2-82 4-62 (275) 34 3kzg_A Arginine 3RD transport 75.3 4.1 0.00017 19.6 9.3 213 1-246 1-235 (237) 35 1i6a_A OXYR, hydrogen peroxide 73.8 4.5 0.00019 19.4 10.1 173 5-212 6-191 (219) 36 3n5l_A Binding protein compone 72.4 4.9 0.0002 19.2 8.2 205 3-241 3-242 (310) 37 2nxo_A Hypothetical protein SC 71.8 5 0.00021 19.1 5.0 69 66-136 43-113 (291) 38 1pb7_A N-methyl-D-aspartate re 71.8 5 0.00021 19.1 5.5 136 35-179 79-231 (292) 39 2q88_A EHUB, putative ABC tran 70.0 5.5 0.00023 18.9 5.1 108 67-179 63-180 (257) 40 3k4u_A Binding component of AB 61.6 7.9 0.00033 17.8 8.6 190 3-224 4-209 (245) 41 1r9l_A Glycine betaine-binding 59.6 8.6 0.00036 17.6 4.2 58 4-84 8-65 (309) 42 2fyi_A HTH-type transcriptiona 59.3 8.7 0.00037 17.6 11.1 185 5-223 15-214 (228) 43 2p5x_A ASMTL, N-acetylserotoni 56.0 4.7 0.0002 19.3 2.0 32 123-156 4-35 (230) 44 3o66_A Glycine betaine/carniti 53.4 11 0.00046 16.9 5.7 61 2-81 7-67 (282) 45 1ex2_A Protein MAF; structural 52.5 4.8 0.0002 19.2 1.6 27 234-260 90-116 (189) 46 3jv9_A OXYR, transcriptional r 52.0 11 0.00048 16.8 7.3 171 5-211 5-193 (219) 47 2j01_S 50S ribosomal protein L 51.4 12 0.00049 16.7 3.7 44 261-304 35-85 (112) 48 2amh_A Septum formation protei 50.9 4.1 0.00017 19.7 1.0 39 118-156 5-45 (207) 49 2j5v_A Glutamate 5-kinase; pro 42.6 2.4 9.9E-05 21.2 -1.3 128 123-288 205-338 (367) 50 2pvu_A ARTJ; basic amino acid 39.9 17 0.00073 15.6 11.3 150 2-179 40-203 (272) 51 3bbo_Q Ribosomal protein L18; 31.6 24 0.00099 14.8 3.7 45 260-304 76-134 (161) 52 2ql3_A Probable transcriptiona 30.7 24 0.001 14.7 10.8 174 5-211 6-192 (209) 53 2b4l_A Glycine betaine-binding 28.9 26 0.0011 14.5 5.4 26 4-29 165-190 (268) 54 1ovy_A 50S ribosomal protein L 28.0 27 0.0011 14.4 4.3 63 238-304 20-93 (120) 55 2rc8_A Glutamate [NMDA] recept 26.6 29 0.0012 14.2 7.5 110 67-179 107-231 (294) 56 3gqv_A Enoyl reductase; medium 24.8 31 0.0013 14.0 4.3 52 124-175 190-241 (371) 57 1al3_A Cys regulon transcripti 23.6 33 0.0014 13.8 13.3 186 4-223 93-293 (324) 58 2hxr_A HTH-type transcriptiona 23.0 33 0.0014 13.8 9.2 171 4-211 30-212 (238) 59 2hpg_A ABC transporter, peripl 22.6 34 0.0014 13.7 11.0 165 4-192 9-223 (327) 60 3kbr_A Cyclohexadienyl dehydra 22.0 35 0.0015 13.6 7.9 108 68-179 66-180 (239) 61 1ixc_A CBNR, LYSR-type regulat 21.9 35 0.0015 13.6 12.3 139 5-172 92-244 (294) 62 1wlo_A SUFE protein; structura 21.4 36 0.0015 13.6 3.7 22 242-263 45-66 (136) 63 2pfy_A Putative exported prote 20.9 37 0.0015 13.5 7.6 175 6-209 4-215 (301) 64 1lst_A Lysine, arginine, ornit 20.9 37 0.0016 13.5 5.6 185 3-219 3-211 (239) No 1 >1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A* Probab=100.00 E-value=0 Score=776.72 Aligned_cols=304 Identities=37% Similarity=0.566 Sum_probs=300.1 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE Q ss_conf 99882899707988889999999999997408998338999997327411587556748622699999999870983699 Q gi|254781037|r 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA 80 (307) Q Consensus 1 M~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA 80 (307) |++|+||||||+|+||+|||++|+++|++.+ |++++||++|+|+||+++++||+++||||+||||||++|++|+|||| T Consensus 1 mm~~~IrIgtR~S~LAl~Qa~~v~~~L~~~~--p~~~~ei~~i~T~GD~~~~~~l~~~ggkg~F~kele~aLl~g~iDiA 78 (313) T 1gtk_A 1 MLDNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIA 78 (313) T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHHHHHHC--TTCEEEEEECC-----------------CTTHHHHHHHHHTTSCSEE T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCCCCCHHHCCCCEEEHHHHHHHHHCCCCCEE T ss_conf 9988669995884999999999999999758--99729999996348434687477728863017999999863876489 Q ss_pred EECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHH Q ss_conf 74034321110122101222365683105665243243324567322047530288899842377310330767999998 Q gi|254781037|r 81 VHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNK 160 (307) Q Consensus 81 VHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~K 160 (307) ||||||||+++|+||.|+||++|+|||||||+++++++.+||+|++|||||+||++|++++|||++|++|||||+|||+| T Consensus 79 VHSlKDlP~~~~~gl~i~av~~R~d~rD~li~~~~~~l~~lp~g~~IGTsS~RR~aql~~~~pdl~i~~iRGNVdTRl~K 158 (313) T 1gtk_A 79 VHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSK 158 (313) T ss_dssp EEEGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEEECCCSCHHHHHHH T ss_pred EEECCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCHHHCCCCCEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHHHH T ss_conf 75136577546998569999567888887503763556248998988318888999999868999377564769999999 Q ss_pred HHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 63787655630145454216211222336866735854320789998527612455677623978888878899999871 Q gi|254781037|r 161 LNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAEL 240 (307) Q Consensus 161 l~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L 240 (307) |++|+|||||||+|||+|||+.+.++++|++++|+|||||||||||||++|.++.++++.|||++|+.|+.+||+||+.| T Consensus 159 L~~g~~DaiILA~AGl~RLgl~~~~~~~l~~~~~~PA~gQGaiave~r~~d~~~~~~l~~in~~~t~~~~~aER~fL~~L 238 (313) T 1gtk_A 159 LDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRL 238 (313) T ss_dssp HHTTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGGCCHHHHHHHHHHHHHHHHH T ss_pred HHCCCCCEEEEECCHHCCCCCCCCCEEECCCHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 76789778986400121012113304861602046641001256655178588999998744578999999999999985 Q ss_pred CCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHCC Q ss_conf 776488528999999998999999986998789999984398889999999999999706056337 Q gi|254781037|r 241 DGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRFISNKNVFN 306 (307) Q Consensus 241 ~GgC~~PIGa~A~i~~~~l~l~a~v~s~DG~~~i~~~~~g~~~~a~~LG~~la~~Ll~~g~k~iLn 306 (307) +|||++|||+||++++++++|+|+|+|+||++.+..+.+|+.++++++|+++|++|+++||+++|+ T Consensus 239 ~ggC~sPIga~A~~~~~~l~l~~~v~s~DG~~~i~~~~~g~~~~a~~lG~~la~~Ll~~Ga~ell~ 304 (313) T 1gtk_A 239 EGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILA 304 (313) T ss_dssp TCCTTSCEEEEEEEETTEEEEEEEEECTTSSCEEEEEEEECGGGHHHHHHHHHHHHHHTTHHHHHH T ss_pred CCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCHHHHHH T ss_conf 899998649999998999999999998899789999998478999999999999999848999999 No 2 >3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* Probab=100.00 E-value=0 Score=750.95 Aligned_cols=301 Identities=35% Similarity=0.489 Sum_probs=291.9 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740 Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307) Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307) |+|+||||+|+||+|||++|.+.|++.+ |++++||++|+|+||+++++||+++||||+||||||++|++|+||||||| T Consensus 22 k~IrIgTR~S~LAl~Qa~~v~~~L~~~~--p~~~~ei~~i~T~GD~~~~~~L~~~ggkG~Ftkele~aLl~g~iDiAVHS 99 (364) T 3ecr_A 22 RVIRVGTRKSQLARIQTDSVVATLKASY--PGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHS 99 (364) T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHHHC--TTSEEEEEEC-------------------CCHHHHHHHHHTTSCSEEEEE T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCEEEEC T ss_conf 4699995899999999999999999758--99818999985466202586188748863229999999964998889872 Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCEEEEECC---CCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHH Q ss_conf 3432111012210122236568310566524---3243324567322047530288899842377310330767999998 Q gi|254781037|r 84 AKDMPTKLLKGLQISAYLPREDIRDVFISHT---AQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNK 160 (307) Q Consensus 84 lKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~---~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~K 160 (307) |||||+++|+||.|+|+++|+|||||||+++ ++++.+||+|++|||||+||++|++++|||++|++|||||+|||+| T Consensus 100 lKDlP~~~~~gl~i~a~~~R~dprD~lv~~~~~~~~~l~~lp~ga~IGTSS~RR~aql~~~~pdl~i~~iRGNIdTRl~K 179 (364) T 3ecr_A 100 LKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRK 179 (364) T ss_dssp GGGSCSSCCTTEEEEEECCCCCCCEEEEECTTCTTCCTTTSCTTCEEECCCHHHHHHHHHHCTTSEEECCCSCHHHHHHH T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCHHHCCCCCEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHHHH T ss_conf 56577645787621123477982546886563000027457998886037267999998867726245325879999998 Q ss_pred HH-CCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 63-78765563014545421621122233686673585432078999852761245567762397888887889999987 Q gi|254781037|r 161 LN-NNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAE 239 (307) Q Consensus 161 l~-~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~ 239 (307) |+ +|+|||||||+|||+||++.++++++|++++|+||||||+||||||++|.++.++++.|||++|+.|+.+||+||+. T Consensus 180 L~~~ge~DaiILA~AGl~RLgl~~~~~~~l~~~~~~PA~gQGaiaie~r~~d~~~~~ll~~ind~~t~~~v~aER~~L~~ 259 (364) T 3ecr_A 180 LDEQQEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRH 259 (364) T ss_dssp HHHSSSCSEEEEEHHHHHHTTCGGGCCEECCTTTCCBCTTTTCEEEEEETTCHHHHHHHHTTCCHHHHHHHHHHHHHHHH T ss_pred HHCCCCCCEEEEHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 63348731897656677776642202314685661765452027999805778889998871899899999999999998 Q ss_pred HCCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEC-----------------------------CHHHHHHHHH Q ss_conf 17764885289999999989999999869987899999843-----------------------------9888999999 Q gi|254781037|r 240 LDGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNG-----------------------------NRCDAINIGR 290 (307) Q Consensus 240 L~GgC~~PIGa~A~i~~~~l~l~a~v~s~DG~~~i~~~~~g-----------------------------~~~~a~~LG~ 290 (307) |+|||++|||+||++++++|+|+|+|+|+||++.++.+.++ +.++|++||+ T Consensus 260 L~ggC~~PIga~a~~~~~~l~l~a~v~s~DG~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~LG~ 339 (364) T 3ecr_A 260 LEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGI 339 (364) T ss_dssp HC--CCSSEEEEEEEETTEEEEEEEEECTTSCSEEEEEEEEECCCCCSCCCCCTTCCCBTTBCCTTSCHHHHHHHHHHHH T ss_pred HCCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 39799885588999989999999999999876001527874114653222343332100011122234677889999999 Q ss_pred HHHHHHHHHCCHHHCC Q ss_conf 9999999706056337 Q gi|254781037|r 291 DAAQYIRFISNKNVFN 306 (307) Q Consensus 291 ~la~~Ll~~g~k~iLn 306 (307) ++|++|+++||++||+ T Consensus 340 ~lAe~Ll~~GA~~iL~ 355 (364) T 3ecr_A 340 SLANLLLSKGAKNILD 355 (364) T ss_dssp HHHHHHHHTTHHHHHH T ss_pred HHHHHHHHHCHHHHHH T ss_conf 9999999819899999 No 3 >3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis} Probab=98.00 E-value=0.00071 Score=44.03 Aligned_cols=207 Identities=12% Similarity=0.045 Sum_probs=114.7 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974 Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307) Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307) .++|+||+-.++-+-.-.+.|...+++. ++++|++.+..- ..+.+||.+|++|+... T Consensus 22 ~~~i~ig~~~~~~~~~~~~~v~~~~k~~----Gi~Ve~v~f~d~-------------------~~~n~AL~~G~iD~n~~ 78 (275) T 3gxa_A 22 KKEIVFGTTVGDFGDMVKEQIQPELEKK----GYTVKLVEFTDY-------------------VRPNLALAEGELDINVF 78 (275) T ss_dssp -CEEEEEEETTHHHHHHHHTHHHHHHTT----TCEEEEEEESSS-------------------SHHHHHHHHTSCSEEEE T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHC----CCEEEEEEECCC-------------------HHHHHHHHCCCCCEECC T ss_conf 8528999606987999999989999965----987999995783-------------------35789986699554314 Q ss_pred CCCCCCCC--CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCC----HHHHHHHHHC------------- Q ss_conf 03432111--0122101222365683105665243243324567322047530----2888998423------------- Q gi|254781037|r 83 SAKDMPTK--LLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLR----RKALLLRWRS------------- 143 (307) Q Consensus 83 SlKDlP~~--~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~R----R~aql~~~~p------------- 143 (307) .-.-.-.. -..+..+..+-+-....-.+.+++.+++.+||.|++|+.+.-- |...++...- T Consensus 79 q~~p~l~~~~~~~g~~l~~v~~~~~~~~glys~k~ksl~dl~~G~kIaip~d~sn~~raL~~L~~~Gli~l~~~~~~~~~ 158 (275) T 3gxa_A 79 QHKPYLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTA 158 (275) T ss_dssp ECHHHHHHHHHHHTCCEEEEEECCBCCCEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGC T ss_pred CCHHHHHHHHHHCCCCEEEEEEEECCCEEEEECCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEECCCCCCCCCC T ss_conf 45788999999779967998563115506663265654135899989982486368899999986695311688775545 Q ss_pred ----------CCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC-- Q ss_conf ----------77310330767999998637876556301454542162112223368667358543207899985276-- Q gi|254781037|r 144 ----------DISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN-- 211 (307) Q Consensus 144 ----------~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d-- 211 (307) +++++++-...-.| -| +++|+.|....-...-++.....-+.++ .-+=+..|.+|.+| T Consensus 159 t~~di~~n~~~l~~~~~~~~~l~~--~l--~dvD~avi~~~~~~~agl~~~~~l~~e~------~~~y~nvivvr~~~~d 228 (275) T 3gxa_A 159 SKADIAENLKNIKIVELEAAQLPR--SR--ADVDFAVVNGNYAISSGMKLTEALFQEP------SFAYVNWSAVKTADKD 228 (275) T ss_dssp CGGGEEECTTCCEEEEECGGGHHH--HT--TTSSEEEECHHHHHHTTCCGGGCSEECC------CCTTCCEEEEEGGGTT T ss_pred CCCHHHHCCCCCEEEECCHHHHHH--HC--CCCCEEEECCCHHHHCCCCHHHCCCCCC------CCCEEEEEEEECCCCC T ss_conf 400043276564599856666313--12--6755899646468775998234000277------8763699998076779 Q ss_pred -CHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEE Q ss_conf -12455677623978888878899999871776488528 Q gi|254781037|r 212 -PKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIA 249 (307) Q Consensus 212 -~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIG 249 (307) +.+..+++..+++++.. |+...=.|+-.|-+ T Consensus 229 ~~~ik~l~ea~~s~ev~~-------~i~~~y~G~~~pa~ 260 (275) T 3gxa_A 229 SQWLKDVTEAYNSDAFKA-------YAHKRFEGYKSPAA 260 (275) T ss_dssp CHHHHHHHHHTTSHHHHH-------HHHHHSTTCBCCTT T ss_pred CHHHHHHHHHHCCHHHHH-------HHHHHCCCEEECCE T ss_conf 599999999976999999-------99987799188254 No 4 >1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1 Probab=97.96 E-value=0.00021 Score=47.51 Aligned_cols=196 Identities=13% Similarity=0.061 Sum_probs=112.8 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974 Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307) Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307) .++|+||+.+|.-..|+ .+.+.+++. ++++|++.+. |-. +..+||.+|+||++. T Consensus 38 ~k~i~IG~~~~~~~~~~--~~~~~~kk~----Gl~Ve~~~F~---d~~----------------~~~~AL~~G~ID~~~- 91 (295) T 1p99_A 38 DKKVTIGVASNDTKAWE--KVKELAKKD----DIDVEIKHFS---DYN----------------LPNKALNDGDIDMNA- 91 (295) T ss_dssp --CEEEEESSSCCHHHH--HHHHHHGGG----TCCEEEEECS---STT----------------SHHHHHHTTSSSEEE- T ss_pred CCEEEEEECCCCHHHHH--HHHHHHHHC----CCEEEEEEEC---CCH----------------HHHHHHHCCCCCEEE- T ss_conf 96499996798389999--999999975----9889999817---827----------------799999759967675- Q ss_pred CCCCCCCC-----CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHH----HHHHHHCCC-------- Q ss_conf 03432111-----0122101222365683105665243243324567322047530288----899842377-------- Q gi|254781037|r 83 SAKDMPTK-----LLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKA----LLLRWRSDI-------- 145 (307) Q Consensus 83 SlKDlP~~-----~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~a----ql~~~~p~l-------- 145 (307) +-+.|.- -..+..+..+..-.....++.+++++++.++++|.+|++....-.. .++....-+ T Consensus 92 -~~~~p~l~~~~k~~~g~~l~~v~~~~~~~~~~~~~~~~~i~d~~~Gk~Ia~p~~~s~~~~~l~~l~~~gli~l~~~~~~ 170 (295) T 1p99_A 92 -FQHFAFLDQYKKAHKGTKISALSTTVLAPLGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGL 170 (295) T ss_dssp -EEEHHHHHHHHHHCTTCCEEEEEEEEECCCEEECSSCSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCT T ss_pred -CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCC T ss_conf -1789999999976799559994452112310126566632112589857833687289999999986692774588887 Q ss_pred --CCHHHCCCH--------H-HHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC--- Q ss_conf --310330767--------9-99998637876556301454542162112223368667358543207899985276--- Q gi|254781037|r 146 --SVIDFRGKI--------E-TRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN--- 211 (307) Q Consensus 146 --~~~~iRGNv--------~-TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d--- 211 (307) ...++-.|- + ..+. ...+++|+.++...=+.+.++...-...+..+.--|...+-+..+.+|.++ T Consensus 171 ~~t~~DI~~n~~~~~~~~~~~a~~a-~a~~~vDaa~i~~p~~~~a~~~~~~~~l~~e~~~~~~~~~~~~~~~~r~~~~~~ 249 (295) T 1p99_A 171 AGTVKDITSNPKHLKITAVDAQQTA-RALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDN 249 (295) T ss_dssp TCCGGGEEECTTCCEEEEECGGGTT-GGGGTSSEEEECHHHHHHTTCCTTTSCSEECCCSSGGGGGGEEEEEEEGGGTTC T ss_pred CCCHHHHHHCCCCCCCCCCCHHHHH-HHCCCCCEEEECCHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCC T ss_conf 7787666544444454564066778-732776489955439998278866665886477666677537999978400197 Q ss_pred CHHHHHHHHHCCHHH Q ss_conf 124556776239788 Q gi|254781037|r 212 PKAQELVKVINHEDT 226 (307) Q Consensus 212 ~~i~~il~~Ind~~T 226 (307) +.+..+++.....++ T Consensus 250 e~vk~lv~a~~s~E~ 264 (295) T 1p99_A 250 KTYAKIVELYHSKEA 264 (295) T ss_dssp HHHHHHHHHHHSHHH T ss_pred HHHHHHHHHHCCHHH T ss_conf 999999999789999 No 5 >3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis} Probab=97.92 E-value=0.00023 Score=47.20 Aligned_cols=202 Identities=11% Similarity=0.042 Sum_probs=116.3 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE-- Q ss_conf 828997079888899999999999974089983389999973274115875567486226999999998709836997-- Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV-- 81 (307) Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV-- 81 (307) |+|+||+-..+-+-...+.|...+++. ++++|++.+. |-. ....||.+|+||+.+ T Consensus 1 k~i~vg~~~~p~~~~~~e~vk~~~k~~----Gi~vevv~f~---D~~----------------~~N~AL~~GeiDaN~fQ 57 (245) T 3ir1_A 1 KEIVFGTTVGDFGDMVKEQIQPELEKK----GYTVKLVEFT---DYV----------------RPNLALAEGELDINVFQ 57 (245) T ss_dssp CEEEEEEETTHHHHHHHHTHHHHHHTT----TCEEEEEEES---SSS----------------HHHHHHHHTSCSEEEEE T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEEEC---CCC----------------HHHHHHHCCCCCEEHHC T ss_conf 959998078987999999988999965----9769999956---852----------------17799866996523122 Q ss_pred E--CCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCC----CHHHHHHHHHCCCCCHHHCCCHH Q ss_conf 4--03432111012210122236568310566524324332456732204753----02888998423773103307679 Q gi|254781037|r 82 H--SAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSL----RRKALLLRWRSDISVIDFRGKIE 155 (307) Q Consensus 82 H--SlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~----RR~aql~~~~p~l~~~~iRGNv~ 155 (307) | .|...-.+-.-.|+..+-..=. -=.|-|+++++++++|.|++|+-++- -|...++... -...++.+++ T Consensus 58 h~~yl~~~n~~~g~~L~~v~~~~~~--p~glYS~k~ksl~dlp~Ga~IaIpnD~sn~~RaL~lL~~~---GlI~lk~~~~ 132 (245) T 3ir1_A 58 HKPYLDDFKKEHNLDITEVFQVPTA--PLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLDEL---GWIKLKDGIN 132 (245) T ss_dssp CHHHHHHHHHHHTCCEEEEEECCBC--CCEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHT---TSSEECTTCC T ss_pred CHHHHHHHHHHCCCCEEEEEEEEEC--CEEEECCCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHC---CCEEECCCCC T ss_conf 7999999999859966998665442--4276516868665679999899745865899999999878---9389658988 Q ss_pred HH------------------------HHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC Q ss_conf 99------------------------998637876556301454542162112223368667358543207899985276 Q gi|254781037|r 156 TR------------------------LNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN 211 (307) Q Consensus 156 TR------------------------l~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307) .- -+-| .++|+.+.-..-...-|+.....-+.++ .-+-+..+.+|++| T Consensus 133 ~~~~t~~DI~~Npk~l~~~ev~~a~l~~al--~dvD~avi~~~~~~~agl~~~~~l~~e~------~~~y~~~~vvr~~d 204 (245) T 3ir1_A 133 PLTASKADIAENLKNIKIVELEAAQLPRSR--ADVDFAVVNGNYAISSGMKLTEALFQEP------SFAYVNWSAVKTAD 204 (245) T ss_dssp GGGCCGGGEEECTTCCEEEEECGGGSGGGG--GTSSEEEECHHHHHHTTCCGGGCSEECC------CCTTCCEEEEEGGG T ss_pred CCCCCHHHHHCCCCCCEEEECCHHHHHHHC--CCCCEEEECCHHHHHCCCCHHHCEEECC------CCCEEEEEEEECCC T ss_conf 664776454155646657876888855532--5677899714069787978234001078------88728999980766 Q ss_pred ---CHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE Q ss_conf ---1245567762397888887889999987177648852 Q gi|254781037|r 212 ---PKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAI 248 (307) Q Consensus 212 ---~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PI 248 (307) +++..+.+...+++... |+..-=.|+-.|- T Consensus 205 ~d~~~ik~l~~a~~s~~v~~-------~i~~~~~G~~~Pa 237 (245) T 3ir1_A 205 KDSQWLKDVTEAYNSDAFKA-------YAHKRFEGYKSPA 237 (245) T ss_dssp TTCHHHHHHHHHTTSHHHHH-------HHHHHSTTCBCCT T ss_pred CCCHHHHHHHHHHCCHHHHH-------HHHHHCCCCEECC T ss_conf 79899999999977999999-------9998789928844 No 6 >3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus} Probab=97.62 E-value=0.0015 Score=41.93 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=107.9 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE Q ss_conf 99882899707988889999999999997408998338999997327411587556748622699999999870983699 Q gi|254781037|r 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA 80 (307) Q Consensus 1 M~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA 80 (307) |.+++||||.=..+-|.+- ....+.+.+- .++++|++.+.+-.+ .-+||..|++|++ T Consensus 3 ~~~~~irvG~~~~~~~~~~-~~~~k~~~e~---~Gl~Ve~~~f~~g~~-------------------~~~Al~~G~iD~~ 59 (237) T 3k2d_A 3 MDTSKVKVGVMAGAEAQVA-EVAAKVAKEK---YGLDVELVTFTDYVT-------------------PNAALDDGSIDMN 59 (237) T ss_dssp SCCCCEEEEEETTHHHHHH-HHHHHHHHHH---HCCCEEEEEESCTTS-------------------HHHHHHHTSCSEE T ss_pred CCCCEEEEEEECCCHHHHH-HHHHHHHHHH---CCCEEEEEEECCCHH-------------------HHHHHHCCCCCEE T ss_conf 8887389996079859999-9997778986---698899998088256-------------------8999976997778 Q ss_pred EECCCCCCCC----CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCC----HHHHHHHHHCCCCCHHHCC Q ss_conf 7403432111----0122101222365683105665243243324567322047530----2888998423773103307 Q gi|254781037|r 81 VHSAKDMPTK----LLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLR----RKALLLRWRSDISVIDFRG 152 (307) Q Consensus 81 VHSlKDlP~~----~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~R----R~aql~~~~p~l~~~~iRG 152 (307) .= =..|.. -..++.+.++........++..+...++.+..+|.+||++..- +..........+...+..+ T Consensus 60 ~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kGk~ia~~~~~s~~~~~l~~l~~~~~~~~~~~~~ 137 (237) T 3k2d_A 60 AF--QHKPYLDRQVEDRDYKLTIAGNTFVYPIAGYSKQVKSVAALADGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVG 137 (237) T ss_dssp EE--EEHHHHHHHHHHHCCCEEEEEECCCCCCEEECSSCSCSTTCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCC T ss_pred EE--CCHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCC T ss_conf 75--4578998641058950799842554406998378765546417987999558844999999999849974465544 Q ss_pred CH------------------HHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC--- Q ss_conf 67------------------999998637876556301454542162112223368667358543207899985276--- Q gi|254781037|r 153 KI------------------ETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN--- 211 (307) Q Consensus 153 Nv------------------~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d--- 211 (307) .. .....-+..++.|+.++-..-.....+...-...+..+...| +++.+.+|.++ T Consensus 138 ~~~~~~d~~~~~~~~~~~~~~~~~~a~~~~~~da~~~~~p~~~~a~~~~~~~~i~~~~~~~~----~~~~~v~r~~~~n~ 213 (237) T 3k2d_A 138 LLATVRDIVENPKNITIMELDAAQLPRSLDDVALSIINTTYASSINLTPEKDGVFVEDKESP----YVNLIVARQDNVQN 213 (237) T ss_dssp SSCCGGGEEECTTCCEEEEECGGGHHHHTTTSSEEEECHHHHGGGTCCHHHHCSEECCSSSS----CCEEEEEETTTTTS T ss_pred CCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCEEEECCCCCC----EEEEEEECCCCCCC T ss_conf 46650205545332243333166779975247636966428887205876555764588987----36999986500198 Q ss_pred CHHHHHHHHHCCHHHH Q ss_conf 1245567762397888 Q gi|254781037|r 212 PKAQELVKVINHEDTW 227 (307) Q Consensus 212 ~~i~~il~~Ind~~T~ 227 (307) +.+..+++.+++.++. T Consensus 214 e~v~k~v~A~~~~ev~ 229 (237) T 3k2d_A 214 ENVQNFVKAYQTEEVY 229 (237) T ss_dssp HHHHHHHHHHTSHHHH T ss_pred HHHHHHHHHHCCHHHH T ss_conf 9999999997899999 No 7 >1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1 Probab=97.49 E-value=0.00059 Score=44.55 Aligned_cols=196 Identities=12% Similarity=0.067 Sum_probs=111.3 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 98828997079888899999999999974089983389999973274115875567486226999999998709836997 Q gi|254781037|r 2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307) Q Consensus 2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307) +.++||||.=.++=|... +.+.+.+++. ++++|++.+.. | -+..+||.+|++|++. T Consensus 1 ~~~ti~iG~~~~~~~~~l-~~~k~~~k~~----Gl~Ve~~~f~~----------------g---~~~~~Al~sG~iD~~~ 56 (241) T 1xs5_A 1 KDETVGVGVLSEPHARLL-EIAKEEVKKQ----HIELRIVEFTN----------------Y---VALNEAVMRGDILMNF 56 (241) T ss_dssp CCEEEEEEECSTTHHHHH-HHHHHHHHTT----TEEEEEEECSC----------------H---HHHHHHHHHTSSSEEE T ss_pred CCCEEEEEECCCCHHHHH-HHHHHHHHHC----CCEEEEEEECC----------------C---HHHHHHHHCCCCCEEE T ss_conf 993299996069859999-9999999974----98899999388----------------1---7789999769976798 Q ss_pred ECCCCCCCC----CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCC----CCHHHHHHHHHCCCC------- Q ss_conf 403432111----01221012223656831056652432433245673220475----302888998423773------- Q gi|254781037|r 82 HSAKDMPTK----LLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSS----LRRKALLLRWRSDIS------- 146 (307) Q Consensus 82 HSlKDlP~~----~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS----~RR~aql~~~~p~l~------- 146 (307) +-..|.. ...+..+.++-.-.....++++++++++.+++.|.+|++.. -.+...++...--+. T Consensus 57 --~g~~p~l~~~~~~~~~~l~~v~~~~~~~~~l~~~~~~s~~d~~~gk~ia~~~~~s~~~~~~~~l~~~~~~~l~~~~~~ 134 (241) T 1xs5_A 57 --FQHVPHMQQFNQEHNGDLVSVGNVHVEPLALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGL 134 (241) T ss_dssp --EEEHHHHHHHHHHHTCCEEEEEEEEECCCEEECSSCCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCT T ss_pred --ECCHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEECCCCCC T ss_conf --557889999885469738999884146548883686776673488769825888279999999997588134368887 Q ss_pred ---CHHHCC--------CHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEC---CCC Q ss_conf ---103307--------679999986378765563014545421621122233686673585432078999852---761 Q gi|254781037|r 147 ---VIDFRG--------KIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHV---NNP 212 (307) Q Consensus 147 ---~~~iRG--------Nv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~---~d~ 212 (307) ..++-. +++.-..-+..+++|+.+...-...+..+.......+..+...|. ++.+.+|+ +++ T Consensus 135 ~~~~~Di~~~~~~~~~~~~~~a~~a~~~~~vda~~~~~p~~~~a~~~~~~~~l~~~~~~~~~----~~~lv~r~~~~~~~ 210 (241) T 1xs5_A 135 FATVEDVQQNVRNVVLQEVESALLPRVFDQVDGAVINGNYAIMAGLSARRDGLAVEPDASAY----ANVLVVKRGNEADA 210 (241) T ss_dssp TCCGGGEEECTTCCEEEEECGGGHHHHGGGSSEEEECHHHHHHTTCCTTTTCSEECSCGGGG----CEEEEEETTCTTCH T ss_pred CCCHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCEEEECCCCCCE----EEEEEECCHHHCCH T ss_conf 67765665343445425744767777427775799646489985588766779963789863----79999834010989 Q ss_pred HHHHHHHHHCCHHHH Q ss_conf 245567762397888 Q gi|254781037|r 213 KAQELVKVINHEDTW 227 (307) Q Consensus 213 ~i~~il~~Ind~~T~ 227 (307) .+..+++.+++.++. T Consensus 211 ~i~~l~~a~~~~ev~ 225 (241) T 1xs5_A 211 RVQAVLRALCGGRVR 225 (241) T ss_dssp HHHHHHHHHTSHHHH T ss_pred HHHHHHHHHCCHHHH T ss_conf 999999997799999 No 8 >2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Probab=97.40 E-value=0.0013 Score=42.35 Aligned_cols=170 Identities=13% Similarity=0.090 Sum_probs=97.6 Q ss_pred CCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEE--CCC--CCCCEE Q ss_conf 9833899999732741158755674862269999999987098369974034321110122101222--365--683105 Q gi|254781037|r 34 PPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAY--LPR--EDIRDV 109 (307) Q Consensus 34 p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~--~~R--~d~rD~ 109 (307) .++.+|++.+... .+.-++|.+|++|+|+=|+-........+.....+ -.. -.+.+. T Consensus 42 ~gl~ve~~~~~g~-------------------~~~i~al~sg~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231) T 2ozz_A 42 DGIPFYYAHMRGA-------------------DIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQL 102 (231) T ss_dssp TTSCEEEEECSCH-------------------HHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCEEE T ss_pred CCCCEEEEEECCH-------------------HHHHHHHHCCCCCEEEECCHHHHHHHHCCCCEEEEEEECCCCCCCCCC T ss_conf 3982899994483-------------------999999986994779727188999996699859999503332245545 Q ss_pred EEECCCCCCCCCCCCCEEECCCCCHHHHHH-HH---HCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCC Q ss_conf 665243243324567322047530288899-84---23773103307679999986378765563014545421621122 Q gi|254781037|r 110 FISHTAQSLKDLALHSVIGTSSLRRKALLL-RW---RSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVI 185 (307) Q Consensus 110 lv~~~~~~l~~lp~~a~IGTsS~RR~aql~-~~---~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i 185 (307) .+ ++++||. |.+||++.-=-...++ .. ..|++++++. -..-+..|.+|+.||+++.......+...... T Consensus 103 ~i----~~~~dLk-Gk~Vgv~~~s~~~~~L~~~g~~~~~v~~v~~~--~~~~~~al~~G~iDa~v~~~~~~~~~~~~~~~ 175 (231) T 2ozz_A 103 IC----RKGESGN-VKRVGLDSRSADQKIMTDVFFGDSDVERVDLS--YHESLQRIVKGDVDAVIWNVVAENELTMLGLE 175 (231) T ss_dssp EE----ETTCGGG-CCEEEECTTCHHHHHHHHHHHTTSCCEEEECC--HHHHHHHHHHTSCCEEEEEC-CHHHHHHTTEE T ss_pred CC----CCCCCCC-CCEEEECCCCHHHHHHHHCCCCCCCEEEEECC--HHHHHHHHHCCCEEEEEECCHHHHHHHHCCCC T ss_conf 66----7831059-99999889986999999849984555999748--89999998719734999683899998637874 Q ss_pred CCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHH Q ss_conf 2336866735854320789998527612455677623978888878 Q gi|254781037|r 186 KEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVN 231 (307) Q Consensus 186 ~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~ 231 (307) ...+..+...+..++.++ -.|++++.+..+++.+-+.+-....+ T Consensus 176 ~~~~~~~~~~~~~~~~vi--~vrk~~~~l~~lv~a~v~~~~v~~~Q 219 (231) T 2ozz_A 176 ATPLTDDPRFLQATEAVV--LTRVDDYPMQQLLRAVVDKHALLAHQ 219 (231) T ss_dssp EEECCSCHHHHHTTCEEE--EEETTCHHHHHHHHHHCCHHHHHHHH T ss_pred EEEECCCCCCCCCCEEEE--EECCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 377104665556754999--99699899999999998489999999 No 9 >2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Probab=97.03 E-value=0.006 Score=38.04 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=104.3 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974 Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307) Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307) -++||||-=.+..++.=+.. ...+++. ..++++|.+...+.. ++-++|..|++|+++- T Consensus 2 p~~irIGy~~~~~~~~va~~-~g~fe~~--g~~~~Ve~~~~~~g~-------------------~~~~al~~G~iD~~~~ 59 (308) T 2x26_A 2 PEALRIGYQKGSIGMVLAKS-HQLLEKR--YPESKISWVEFPAGP-------------------QMLEALNVGSIDLGST 59 (308) T ss_dssp CSEEEEEECTTCHHHHHHHH-TTHHHHH--CTTSEEEEEECSSHH-------------------HHHHHHHHTSCSEEEE T ss_pred CCEEEEEECCCCHHHHHHHH-HCHHHHH--CCCCEEEEEECCCHH-------------------HHHHHHHCCCCCEEEE T ss_conf 96499975788549999997-0978771--899807999789879-------------------9999998499788995 Q ss_pred CCCCCCCCCCCCCE--EEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCCCCHHHHH-----HHH---HCCCCCHH Q ss_conf 03432111012210--1222365683105665243---24332456732204753028889-----984---23773103 Q gi|254781037|r 83 SAKDMPTKLLKGLQ--ISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSSLRRKALL-----LRW---RSDISVID 149 (307) Q Consensus 83 SlKDlP~~~~~~l~--i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS~RR~aql-----~~~---~p~l~~~~ 149 (307) +.-.+-.....|.. +.+.....++...++.+.+ +++.|| +|-+||++..-....+ +.. ..|+++++ T Consensus 60 ~~~~~l~~~~~G~~~~~v~~~~~~~~~~~~~~~~~s~i~s~~DL-kGK~Iav~~g~~~~~~~~~~L~~~Gl~~~dv~~v~ 138 (308) T 2x26_A 60 GDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADL-KGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTY 138 (308) T ss_dssp CSHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGG-TTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEE T ss_pred CHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHH-CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 73999999987989799999705774489998789887998894-69722335886589999999998399842447630 Q ss_pred HCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECC----CC-HHHHHHHHH Q ss_conf 3076799999863787655630145454216211222336866735854320789998527----61-245567762 Q gi|254781037|r 150 FRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVN----NP-KAQELVKVI 221 (307) Q Consensus 150 iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~----d~-~i~~il~~I 221 (307) + .......-|.+|+.|+.++...-..++.........++...+.| ++. . +-++.+ ++ .+..+++.+ T Consensus 139 ~--~~~~~~~al~~g~vda~~~~ep~~~~~~~~g~~~~l~~~~~~~~-~~~--~-~~~~~~~~~~~p~~v~~fl~a~ 209 (308) T 2x26_A 139 L--TPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQ-TGS--F-YLAARPYAEKNGAFIQGVLATF 209 (308) T ss_dssp C--CHHHHHHHHHTTSSSEEEEETTHHHHHHHHSSEEEEEESTTSCC-CCE--E-EEEEHHHHHHTHHHHHHHHHHH T ss_pred C--CCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCEEEEECCCCCC-CCE--E-EEECHHHHHHCHHHHHHHHHHH T ss_conf 5--82567777642255489963616999997599489973565687-744--8-9961688887969999999999 No 10 >3hn0_A Nitrate transport protein; YP_001302749.1, structural genomics, joint center for structural genomics, JCSG; 1.75A {Parabacteroides distasonis} Probab=96.28 E-value=0.04 Score=32.67 Aligned_cols=143 Identities=14% Similarity=0.066 Sum_probs=83.3 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974 Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307) Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307) ..+||||+=.++.++.... .+++...+.++.+++.... +| .++.++|.+|++|+|+. T Consensus 4 ~~~irv~~~~~p~~~~~~~----~~~~~~~~~~~~~~v~~~~-s~------------------~~~~~~l~~G~~D~~~~ 60 (283) T 3hn0_A 4 DTVIKVSVLRGPSVIAFAD----WLENPPIIDNKKVQVKVVD-SP------------------DLAQALLIKQETDIAVL 60 (283) T ss_dssp CCEEEEEEESSTHHHHTHH----HHHSCCEETTEEEEEEEES-CH------------------HHHHHHHHTTCCSEEEE T ss_pred CCEEEEEECCCCHHHHHHH----HHHHCCCCCCCCEEEEEEC-CH------------------HHHHHHHHCCCCCEEEE T ss_conf 8659999258961899999----9984474578986899957-99------------------99999997799989973 Q ss_pred CCCCCCCCCCCC--CEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHH------HHHHHHCCCCCHHHCCCH Q ss_conf 034321110122--101222365683105665243243324567322047530288------899842377310330767 Q gi|254781037|r 83 SAKDMPTKLLKG--LQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKA------LLLRWRSDISVIDFRGKI 154 (307) Q Consensus 83 SlKDlP~~~~~~--l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~a------ql~~~~p~l~~~~iRGNv 154 (307) .+-=.......| +.+.++.-+.. -.++++ +|| +|.+||++++--.. .++...-+..+.-.-... T Consensus 61 ~~~~~~~~~~~G~~i~iia~~~~g~--~~ivs~-----~DL-kGk~i~~~~~gs~~~~~~~~~l~~~Gl~~~~~~~~~~~ 132 (283) T 3hn0_A 61 PMINAANLYNKGIKIKLAGCPIWGT--LYLVEK-----TPL-KEPALYVFGNGTTPDILTRYYLGRQRLDYPLNYAFNTA 132 (283) T ss_dssp EHHHHHHHHHTTCSCEEEEEEECCC--CEEEEC-----SSC-CSCCEECSSTTSHHHHHHHHHHHHHTCCCCEECSCCSH T ss_pred CHHHHHHHHHCCCCEEEEEEECCCC--CEEEEH-----HHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCH T ss_conf 6899999996899748999841586--348637-----874-98999993899789999999999779984403674382 Q ss_pred HHHHHHHHCCCCCEEEEEHHHH Q ss_conf 9999986378765563014545 Q gi|254781037|r 155 ETRLNKLNNNKAHAILLAYAGI 176 (307) Q Consensus 155 ~TRl~Kl~~g~~DaiilA~Agl 176 (307) ...+.-|.+|+.|+.++...-. T Consensus 133 ~~~~~al~~g~vDaa~~~eP~~ 154 (283) T 3hn0_A 133 GEITQGILAGKVNRAVLGEPFL 154 (283) T ss_dssp HHHHHHHHHTSCSEEEECTTHH T ss_pred HHHHHHHHCCCCCEEEECCHHH T ss_conf 8889998679977898443689 No 11 >2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* Probab=95.77 E-value=0.068 Score=31.19 Aligned_cols=171 Identities=15% Similarity=0.020 Sum_probs=79.0 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCC------C--CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCC-HHHH Q ss_conf 99999870983699740343211101------2--2101222365683105665243243324567322047530-2888 Q gi|254781037|r 67 EIEKKLISGEIDCAVHSAKDMPTKLL------K--GLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLR-RKAL 137 (307) Q Consensus 67 ele~aLl~g~iDiAVHSlKDlP~~~~------~--~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~R-R~aq 137 (307) ++-.+|.+|++|+++-++..-|.... | ...+.-+.++.++...+-..+.++..++..+..+|+..-- =... T Consensus 96 ~li~~l~~g~~Di~i~~~tit~eR~~~vdFs~Py~~~~~~ilv~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (284) T 2a5s_A 96 GMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERN 175 (284) T ss_dssp HHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCCCCSTTSHHHHSGGGSSSCCCEECCTTSHHHHH T ss_pred HHHHHHHCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCHHHCCCCEEEEEECCCHHHHH T ss_conf 99976638858999958807999995482777624676778986798666635653267033156618999837549999 Q ss_pred HHHHHCCCCCH--H-HCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCC---CCCCCCHHHCCCCCCCCEEEEEEECCC Q ss_conf 99842377310--3-30767999998637876556301454542162112---223368667358543207899985276 Q gi|254781037|r 138 LLRWRSDISVI--D-FRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKV---IKEILNIEDFPPSPGQGAICIETHVNN 211 (307) Q Consensus 138 l~~~~p~l~~~--~-iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~---i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307) ++..+|+.... . ---+.+.-+..|.+|++||+|.-.+-+.-+-..+. +....++..+ +.-..|+-.++++ T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~e~~~~l~~G~vDa~i~d~~~l~~~~~~~~~~~~~~v~~~~~~----~~~~~gia~~k~s 251 (284) T 2a5s_A 176 IRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIF----ATTGYGIALQKGS 251 (284) T ss_dssp HHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCGG----GCEEECCEEETTC T ss_pred HHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCEEEECCCCCC----CCEEEEEEECCCH T ss_conf 997655431267982489999999999869987896459999999985899858993588765----7606999981883 Q ss_pred CHHHHHHHHHCCHHHH--HHHHHHHHHHHHHCCCCC Q ss_conf 1245567762397888--887889999987177648 Q gi|254781037|r 212 PKAQELVKVINHEDTW--DSVNCERAFLAELDGSCK 245 (307) Q Consensus 212 ~~i~~il~~Ind~~T~--~~v~aER~fL~~L~GgC~ 245 (307) +. +..+|..-.. ..-..++-.-+-++|-|| T Consensus 252 ~l----~~~in~ai~~l~~~G~~~~l~~KW~~~~c~ 283 (284) T 2a5s_A 252 PW----KRQIDLALLQFVGDGEMEELETLWLTGICH 283 (284) T ss_dssp TT----HHHHHHHHHHHHHHTHHHHHHHHHTCCCCC T ss_pred HH----HHHHHHHHHHHHHCCHHHHHHHHHCCCCCC T ss_conf 99----999999999999698999999735569789 No 12 >1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Probab=94.81 E-value=0.22 Score=27.85 Aligned_cols=186 Identities=16% Similarity=0.077 Sum_probs=98.7 Q ss_pred CCCEEEEECCC--HHH--------HHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHH Q ss_conf 88289970798--888--------99999999999974089983389999973274115875567486226999999998 Q gi|254781037|r 3 KKPFRIGTRCS--PLA--------LAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKL 72 (307) Q Consensus 3 ~~~i~IgtR~S--~LA--------l~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aL 72 (307) .|+|+|||..+ |.. =...+.+....+.. +++++++... - .++-.+| T Consensus 2 ~k~l~v~~~~~~pP~~~~~~g~~~G~~~dl~~~ia~~~----g~~~~~~~~~--~------------------~~~~~~l 57 (226) T 1wdn_A 2 DKKLVVATDTAFVPFEFKQGDLYVGFDVDLWAAIAKEL----KLDYELKPMD--F------------------SGIIPAL 57 (226) T ss_dssp --CEEEEEESSBTTTBEEETTEEESHHHHHHHHHHHHH----TCCEEEEEEC--G------------------GGHHHHH T ss_pred CCEEEEEECCCCCCEEEEECCEEEEHHHHHHHHHHHHH----CCCEEEEECC--H------------------HHHHHHH T ss_conf 95099998999788488119958887999999999996----9966999789--9------------------9999998 Q ss_pred HCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC---CCCCCCCCCCCEEECCCCCH-HHHHHHHHCCCCCH Q ss_conf 709836997403432111012210122236568310566524---32433245673220475302-88899842377310 Q gi|254781037|r 73 ISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHT---AQSLKDLALHSVIGTSSLRR-KALLLRWRSDISVI 148 (307) Q Consensus 73 l~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~---~~~l~~lp~~a~IGTsS~RR-~aql~~~~p~l~~~ 148 (307) .+|++|+++.++-.-|. ....+.... +-=.++.-+++.++ ..++++| .|.+||+..--= ...++...+..++. T Consensus 58 ~~g~~D~~~~~~~~t~~-r~~~~~fs~-p~~~~~~~~~~~~~~~~~~~~~dl-~g~~v~~~~g~~~~~~l~~~~~~~~~~ 134 (226) T 1wdn_A 58 QTKNVDLALAGITITDE-RKKAIDFSD-GYYKSGLLVMVKANNNDVKSVKDL-DGKVVAVKSGTGSVDYAKANIKTKDLR 134 (226) T ss_dssp HTTSSSEEEEEEECCHH-HHTTSEECS-CCEEEEEEEEEETTCCSCSSSTTT-TTCEEEEETTSHHHHHHHHHCCCSEEE T ss_pred HCCCCCEEEEECCCCHH-HCCEEEECC-CEEEEEEEEEEECCCCCCCCHHHH-CCCEEEEECCCCCCCHHHHHCCCCCEE T ss_conf 76998657442123541-325488245-569977799999999999997995-899999987866420123430355236 Q ss_pred HHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHH Q ss_conf 33076799999863787655630145454216211222336866735854320789998527612455677 Q gi|254781037|r 149 DFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVK 219 (307) Q Consensus 149 ~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~ 219 (307) .+ .+.++-+..+.+|++|+++.......-+--...... .....+......+++-.+++|+.+.+.+. T Consensus 135 ~~-~~~~~~~~~l~~g~vD~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~~l~~~~n 201 (226) T 1wdn_A 135 QF-PNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQ---FKAVGDSLEAQQYGIAFPKGSDELRDKVN 201 (226) T ss_dssp EE-SSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTT---EEEEEEEEEEEEEEEEECTTCHHHHHHHH T ss_pred EE-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCC---EEEECCCCCCCCEEEEEECCCHHHHHHHH T ss_conf 50-778999988745846899916188888876415674---05515567776189999799999999999 No 13 >3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis} Probab=94.64 E-value=0.25 Score=27.58 Aligned_cols=208 Identities=13% Similarity=0.116 Sum_probs=103.8 Q ss_pred CCCEEEEECCC--HHHHHH--------HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHH Q ss_conf 88289970798--888999--------99999999974089983389999973274115875567486226999999998 Q gi|254781037|r 3 KKPFRIGTRCS--PLALAH--------AFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKL 72 (307) Q Consensus 3 ~~~i~IgtR~S--~LAl~Q--------a~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aL 72 (307) ..+|+||+-++ |+.... .-.+.+++.+.- +++++++.+. . .++..+| T Consensus 10 ~~~l~Vg~~~~~pP~~~~~~~G~~~G~~vDi~~~ia~~l---g~~v~~~~~~----------~----------~~~~~~l 66 (242) T 3del_B 10 SEKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKL---GKTLDVREFS----------F----------DALILNL 66 (242) T ss_dssp -CEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHH---TCEEEEEECC----------G----------GGHHHHH T ss_pred CCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHH---CCCEEEEECC----------H----------HHHHHHH T ss_conf 996999989988991589999988872999999999996---9976999789----------8----------9999999 Q ss_pred HCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHH Q ss_conf 7098369974034321110122101222365683105665243---2433245673220475302888998423773103 Q gi|254781037|r 73 ISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSSLRRKALLLRWRSDISVID 149 (307) Q Consensus 73 l~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~ 149 (307) .+|++|+++.++-.-|..... +... -+......-+++.++. .++++| .+.+||...-=-..++...+|+.+++. T Consensus 67 ~~g~~d~~~~~~~~~~~r~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~Vgv~~gs~~~~~l~~~~~~~i~~ 143 (242) T 3del_B 67 KQHRIDAVITGMSITPSRLKE-ILMI-PYYGEEIKHLVLVFKGENKHPLPLT-QYRSVAVQTGTYQEAYLQSLSEVHIRS 143 (242) T ss_dssp HTTSSSEECSSBBCCHHHHTT-EEEE-EEEEEEESEEEEEEESCCSCCCCGG-GSSCEEEETTSHHHHHHHHSTTCCEEE T ss_pred HCCCCCCCCCCCCCCHHHHHH-CCCC-CCCCCCCCEEEEEECCCCCCHHHHH-CCCCEEEECCCHHHHHHHHCCCCEEEE T ss_conf 759866100357699889831-3678-6432355326886315433213442-022002425743589998565870798 Q ss_pred HCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCC----CCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHH Q ss_conf 307679999986378765563014545421621----1222336866735854320789998527612455677623978 Q gi|254781037|r 150 FRGKIETRLNKLNNNKAHAILLAYAGIKRLKKE----KVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHED 225 (307) Q Consensus 150 iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~----~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~ 225 (307) + .+...-+..|.+|++|++|....-+..+--. ......++.. .-.-..++-.+++|+.+.+ .||..- T Consensus 144 ~-~~~~~~~~~L~~griD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~va~~k~~~~l~~---~ln~al 214 (242) T 3del_B 144 F-DSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPED-----QWVLGYGIGVASDRPALAL---KIEAAV 214 (242) T ss_dssp E-SSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGG-----GCEEEEEEEEETTCHHHHH---HHHHHH T ss_pred E-ECCCHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEEECCCCC-----CCCEEEEEEEECCCHHHHH---HHHHHH T ss_conf 6-145312568863974399966999999998588763454226876-----5432689999489999999---999999 Q ss_pred HH------HHHHHHHHHHHHHCCCCC Q ss_conf 88------887889999987177648 Q gi|254781037|r 226 TW------DSVNCERAFLAELDGSCK 245 (307) Q Consensus 226 T~------~~v~aER~fL~~L~GgC~ 245 (307) .. ..--.+|-+|..|+-..| T Consensus 215 ~~l~~~G~~~~I~~ky~l~~~~~~~~ 240 (242) T 3del_B 215 QEIRKEGVLAELEQKWGLNNLEHHHH 240 (242) T ss_dssp HHHHHTTHHHHHHHHTTGGGCSSTTT T ss_pred HHHHHCCHHHHHHHHHCCCHHHHCCC T ss_conf 99997878999999979954650234 No 14 >2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Probab=94.32 E-value=0.29 Score=27.13 Aligned_cols=164 Identities=13% Similarity=0.050 Sum_probs=80.8 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC-----CCCCCCCCCCEEECCCC-CHHHHHHHH Q ss_conf 999987098369974034321110122101222365683105665243-----24332456732204753-028889984 Q gi|254781037|r 68 IEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA-----QSLKDLALHSVIGTSSL-RRKALLLRW 141 (307) Q Consensus 68 le~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~-----~~l~~lp~~a~IGTsS~-RR~aql~~~ 141 (307) +..+|.+|++|+++.++..-|. ..+.+.... +--.. ..+++.+.. .++++|. |.+||+..- --..+++.. T Consensus 75 ~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~s~-p~~~~-~~~~~~~~~~~~~~~~~~dl~-g~~v~v~~g~~~~~~l~~~ 150 (271) T 2iee_A 75 MLTAVNSGQVDAAANDIDVTKD-REEKFAFST-PYKYS-YGTAIVRKDDLSGIKTLKDLK-GKKAAGAATTVYMEVARKY 150 (271) T ss_dssp HHHHHHHTSSSEECSSCBCCHH-HHTTEEECC-CSEEE-EEEEEECTTTGGGCSSGGGGT-TCEEESCTTSHHHHHHHHT T ss_pred HHHHHHCCCCCEEECCCCCCHH-HHHHHHCCC-CCCCC-CCCEEEECCCCCCCCCHHHHC-CCEEEECCCCHHHHHHHHC T ss_conf 9999976997744024546878-876542056-62215-762367504777779878807-9458971685899999970 Q ss_pred HCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCC-CCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHH Q ss_conf 2377310330767999998637876556301454542162112-223368667358543207899985276124556776 Q gi|254781037|r 142 RSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKV-IKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKV 220 (307) Q Consensus 142 ~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~-i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~ 220 (307) +|...+... .+.+.-+..|.+|++|++|.-..-+..+-.... ....+.+. . ..-...+++-.+++|.++.+ . T Consensus 151 ~~~~~i~~~-~s~~~~l~~L~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~k~~~~L~~---~ 223 (271) T 2iee_A 151 GAKEVIYDN-ATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPD--I-KYMPNKQALVMKKSNAALQK---K 223 (271) T ss_dssp TCEEEECSS-CCHHHHHHHHHHTSSCEEEEEHHHHHHHHHHCTTSSCEECSS--C-CEEEEEECCEEETTCHHHHH---H T ss_pred CCCCEEEEE-CCHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEECCC--C-CCCCCEEEEEEECCCHHHHH---H T ss_conf 898589982-360889999976953499924999999998689974686667--6-65661289999489999999---9 Q ss_pred HCCHHHHHH--HHHHHHHHHHHCC Q ss_conf 239788888--7889999987177 Q gi|254781037|r 221 INHEDTWDS--VNCERAFLAELDG 242 (307) Q Consensus 221 Ind~~T~~~--v~aER~fL~~L~G 242 (307) +|..-..+. -+.++-+=+-+++ T Consensus 224 ln~~l~~i~~dG~~~~I~~kyf~~ 247 (271) T 2iee_A 224 MNEALKEMSKDGSLTKLSKQFFNK 247 (271) T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTT T ss_pred HHHHHHHHHHCCHHHHHHHHHCCC T ss_conf 999999999787799999874899 No 15 >2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Probab=93.95 E-value=0.34 Score=26.65 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=72.0 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCC--CCHH---HHHH Q ss_conf 999987098369974034321110122101222365683105665243---2433245673220475--3028---8899 Q gi|254781037|r 68 IEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSS--LRRK---ALLL 139 (307) Q Consensus 68 le~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS--~RR~---aql~ 139 (307) .-.++.+|++|++++++-.-|.. ...+.... +--.. .-+++.+++ ++++|| .|.+||... .--. .+.. T Consensus 93 ~~~~l~~g~~d~~~~~~~~t~~r-~~~~~fs~-p~~~~-~~~~~~~~~~~i~s~~dL-~g~~I~v~~gs~~~~~l~~~~~ 168 (259) T 2v25_A 93 RGPLLDNGSVDAVIATFTITPER-KRIYNFSE-PYYQD-AIGLLVLKEKKYKSLADM-KGANIGVAQAATTKKAIGEAAK 168 (259) T ss_dssp HHHHHHTTSCSEECSSCBCCHHH-HTTEEECS-CSEEE-EEEEEEEGGGCCCSGGGC-TTCEEEEETTCSHHHHHHHHHH T ss_pred HHHHHHCCCCCCCCCCCCCCHHH-HHCEEECE-EEECC-CCCEEEECCCCCCCHHHH-CCCCCCEECCCCHHHHHHHHHH T ss_conf 89999769966003336689788-10114220-34404-543022035797997892-6985002347707788999998 Q ss_pred HHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHH Q ss_conf 84237731033076799999863787655630145454216211222336866735854320789998527612455677 Q gi|254781037|r 140 RWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVK 219 (307) Q Consensus 140 ~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~ 219 (307) ...++.++... .+.+.-+..|.+|++|+++.-..-+..+- ......++ +.-...-+++-.+++|+++.+.+. T Consensus 169 ~~~~~~~~~~~-~s~~~~~~~l~~g~vDa~i~d~~~~~~~~--~~~~~i~~-----~~~~~~~~~~~~~k~~~~l~~~ln 240 (259) T 2v25_A 169 KIGIDVKFSEF-PDYPSIKAALDAKRVDAFSVDKSILLGYV--DDKSEILP-----DSFEPQSYGIVTKKDDPAFAKYVD 240 (259) T ss_dssp HTTCCCEEEEE-SSHHHHHHHHHTTSSSEEEEEHHHHTTTC--CTTEEECS-----CCCSEEEECCEEETTCHHHHHHHH T ss_pred HCCCCEEEECC-CHHHHHHHHHHCCEEEEEECCHHHHHHHH--HHCCCCCC-----CCCCCEEEEEEEECCCHHHHHHHH T ss_conf 70884444214-20788876542783789973599999999--73974357-----877732699999589999999999 No 16 >2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Probab=93.72 E-value=0.38 Score=26.38 Aligned_cols=192 Identities=14% Similarity=0.160 Sum_probs=98.8 Q ss_pred CCCEEEEECCC--HHHHH------------HHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHH Q ss_conf 88289970798--88899------------99999999997408998338999997327411587556748622699999 Q gi|254781037|r 3 KKPFRIGTRCS--PLALA------------HAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEI 68 (307) Q Consensus 3 ~~~i~IgtR~S--~LAl~------------Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkel 68 (307) +++|+||+..+ |.+.. -.+.+++.|....+.++++++++++.. + . . T Consensus 16 ~g~l~Vg~~~~~~P~~~~d~~G~~~G~~vDl~~~ia~~l~~~l~~~~~~v~~~~~~~--~-------------~-----~ 75 (287) T 2vha_A 16 NGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITS--Q-------------N-----R 75 (287) T ss_dssp HTEEEEEECSEETTTEEECSSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCT--T-------------T-----H T ss_pred CCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCH--H-------------H-----H T ss_conf 998999986898893689999988886699999999997477377870699998799--9-------------9-----9 Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCCCC-HHHHH----HH Q ss_conf 99987098369974034321110122101222365683105665243---243324567322047530-28889----98 Q gi|254781037|r 69 EKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSSLR-RKALL----LR 140 (307) Q Consensus 69 e~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS~R-R~aql----~~ 140 (307) ..+|.+|++|++.-++-.-|. ..+.+...... ... .-+++.+++ .++.+|. |.+||.-.-- ...++ .. T Consensus 76 ~~~L~~G~~Di~~~~~~~t~~-R~~~~~fs~p~-~~~-~~~l~~~k~~~i~~~~dL~-g~~v~v~~gs~~~~~l~~~~~~ 151 (287) T 2vha_A 76 IPLLQNGTFDFECGSTTNNVE-RQKQAAFSDTI-FVV-GTRLLTKKGGDIKDFADLK-GKAVVVTSGTTSEVLLNKLNEE 151 (287) T ss_dssp HHHHHTTSCSEECSSCBCCHH-HHTTCEEEEEE-EEE-EEEEEEETTSSCCSGGGGT-TCEEEEETTSHHHHHHHHHHHH T ss_pred HHHHHCCCCCEEECCCCCCHH-HHHHCCCCCCC-CCC-CCEEEEECCCCCCCHHHCC-CCCEEECCCCHHHHHHHHHHHH T ss_conf 999986996434113446645-65432455430-004-7257775489878987808-9812213786699999998887 Q ss_pred HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHH Q ss_conf 42377310330767999998637876556301454542162112223368667358543207899985276124556776 Q gi|254781037|r 141 WRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKV 220 (307) Q Consensus 141 ~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~ 220 (307) ..++.+++... +...-+..|.+|++|+.++....+...-........+ ....+.-..-.+++..+++|+.+ +.. T Consensus 152 ~~~~~~iv~~~-~~~~~~~~l~~grvD~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~av~k~~~~L---~~~ 225 (287) T 2vha_A 152 QKMNMRIISAK-DHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNW--DIVGKPQSQEAYGCMLRKDDPQF---KKL 225 (287) T ss_dssp TTCCCEEEEES-SHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGE--EEESCCSCEEEEEEEECTTCHHH---HHH T ss_pred HCCCCCEEECC-HHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCE--EEECCCCCCCEEEEEEECCCHHH---HHH T ss_conf 37896346522-1789999998699409996149999999965788867--99378777631899994899999---999 Q ss_pred HCCH Q ss_conf 2397 Q gi|254781037|r 221 INHE 224 (307) Q Consensus 221 Ind~ 224 (307) ||.. T Consensus 226 in~~ 229 (287) T 2vha_A 226 MDDT 229 (287) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 17 >3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae} PDB: 3n26_A* Probab=93.23 E-value=0.45 Score=25.88 Aligned_cols=186 Identities=10% Similarity=0.116 Sum_probs=92.5 Q ss_pred CCCCCEEEEECCC--HHHHH---------HHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHH Q ss_conf 9988289970798--88899---------999999999974089983389999973274115875567486226999999 Q gi|254781037|r 1 MEKKPFRIGTRCS--PLALA---------HAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIE 69 (307) Q Consensus 1 M~~~~i~IgtR~S--~LAl~---------Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele 69 (307) +.+|+++||+-.+ |+... -.+. .+.+.+.- +++++++.+. . .+.. T Consensus 7 ~~~~~l~Vg~~~~~~P~~~~~~~g~~~G~~~dl-~~~ia~~l---g~~~~~~~~~----------~----------~~~~ 62 (246) T 3g41_A 7 DRNRIWIVGTNATYPPFEYVDAQGEVVGFDIDL-AKAISEKL---GKQLEVREFA----------F----------DALI 62 (246) T ss_dssp CCCCEEEEEECSCBTTTBEECTTSCEESHHHHH-HHHHHHHH---TCEEEEEECC----------G----------GGHH T ss_pred CCCCCEEEEECCCCCCCEEECCCCCEEEEHHHH-HHHHHHHH---CCCEEEEECC----------H----------HHHH T ss_conf 058959999899889934899999888729999-99999996---9966999889----------8----------9999 Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC-C---CCCCCCCCCCEEECCCCCHHHHHHHHHCCC Q ss_conf 998709836997403432111012210122236568310566524-3---243324567322047530288899842377 Q gi|254781037|r 70 KKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHT-A---QSLKDLALHSVIGTSSLRRKALLLRWRSDI 145 (307) Q Consensus 70 ~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~-~---~~l~~lp~~a~IGTsS~RR~aql~~~~p~l 145 (307) .+|.+|++|++.-++-.-|.. .+.+...- +-...+.-+++.++ . .++++| .|.+||+-+-=-........|+. T Consensus 63 ~~l~~g~~d~i~~~~~~~~~r-~~~~~fs~-~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~Igv~~gs~~~~~l~~~~~~ 139 (246) T 3g41_A 63 LNLKKHRIDAILAGMSITPSR-QKEIALLP-YYGDEVQELMVVSKRSLETPVLPLT-QYSSVAVQTGTYQEHYLLSQPGI 139 (246) T ss_dssp HHHHTTSSSEECSCCBCCHHH-HTTSEEEE-EECCCBCEEEEEEETTCCSCSCCGG-GSSCEEEETTSHHHHHHHTSTTC T ss_pred HHHHCCCCCEEEEECCCCHHH-CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEECCHHHHHHHHCCCC T ss_conf 999759988796623158666-03434342-3333343321122223444410012-34058885153799999838875 Q ss_pred CCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCC----CCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHH Q ss_conf 3103307679999986378765563014545421621----1222336866735854320789998527612455677 Q gi|254781037|r 146 SVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKE----KVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVK 219 (307) Q Consensus 146 ~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~----~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~ 219 (307) +++.+. |.+.-+..|..|+.|+++.-..-...+-.. ......+++ ..-..-.++-.+++|+++.+.+. T Consensus 140 ~~~~~~-~~~~~~~~L~~GriD~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~k~~~~L~~~in 211 (246) T 3g41_A 140 CVRSFD-STLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPP-----ECWVLGCGLGVAKDRPEEIQTIQ 211 (246) T ss_dssp CEEEES-CHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCG-----GGCBCCEEEEECTTCHHHHHHHH T ss_pred EEEEEC-HHHHHHHHHHCCCCCHHHHCHHHHHHHHHHCCCCCCEEECCCC-----CCCCEEEEEEEECCCHHHHHHHH T ss_conf 389834-0787888987598431130699999999854565302322587-----54430389999698999999999 No 18 >1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Probab=93.05 E-value=0.42 Score=26.09 Aligned_cols=142 Identities=11% Similarity=0.082 Sum_probs=75.4 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCCCCHH-HHHHHHHC Q ss_conf 999987098369974034321110122101222365683105665243---24332456732204753028-88998423 Q gi|254781037|r 68 IEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSSLRRK-ALLLRWRS 143 (307) Q Consensus 68 le~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS~RR~-aql~~~~p 143 (307) ...+|.+|++|+++.++-.-|. ......+.- +--.+ .-+++.+.. ++++||. |.+||...---. ..+....| T Consensus 98 ~~~~l~~g~~d~~~~~~~~t~~-R~~~~~fs~-py~~~-~~~~~~~~~~~i~~~~dL~-g~~V~v~~g~~~~~~l~~~~~ 173 (292) T 1xt8_A 98 RVEFLKSNKVDIILANFTQTPQ-RAEQVDFCS-PYMKV-ALGVAVPKDSNITSVEDLK-DKTLLLNKGTTADAYFTQNYP 173 (292) T ss_dssp HHHHHHTTSCSEECSSCBCCHH-HHTTEEECC-CCEEE-EEEEEEETTCCCCSSGGGT-TSEEEEETTSHHHHHHHHHCT T ss_pred HHHHHHCCCCCCCCCCCCCCCC-HHCCCCCCC-CEEEC-CCEEEEECCCCCCCHHHHH-HCEEEEECCCHHHHHHHHHHH T ss_conf 8999986997711355656711-210246675-34741-5137872245767477770-066775158589999997100 Q ss_pred CCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHH Q ss_conf 773103307679999986378765563014545421621122233686673585432078999852761245567 Q gi|254781037|r 144 DISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELV 218 (307) Q Consensus 144 ~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il 218 (307) +.+++.+. +.+.-++.|.+|++|+++.....+..+-....... +... |..-+.-+++-.+++|+++.+.+ T Consensus 174 ~~~~v~~~-~~~~~~~~l~~G~vDa~~~d~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~iav~k~~~~L~~~l 243 (292) T 1xt8_A 174 NIKTLKYD-QNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFK-MGIK---ELGNKDVIAPAVKKGDKELKEFI 243 (292) T ss_dssp TSEEEEES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEE-EEEE---EEEEEEEECCEEETTCHHHHHHH T ss_pred HHHHEEEC-CCCCHHHHHHCCCEEEEEECHHHHHHHHHHCCCCE-EECC---CCCCCCEEEEEEECCCHHHHHHH T ss_conf 00000000-22201124436936999956999999999789978-9414---67877339999979999999999 No 19 >3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Probab=92.90 E-value=0.5 Score=25.57 Aligned_cols=141 Identities=20% Similarity=0.190 Sum_probs=79.2 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC----CCCCCCCCCCEEECCCC-CHHHHHHH Q ss_conf 99999987098369974034321110122101222365683105665243----24332456732204753-02888998 Q gi|254781037|r 66 EEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA----QSLKDLALHSVIGTSSL-RRKALLLR 140 (307) Q Consensus 66 kele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~----~~l~~lp~~a~IGTsS~-RR~aql~~ 140 (307) +++-.+|.+|++|++.--..+ |. ....+... .+=-....+++.+.. .++++|. |.+||+..- --...+.. T Consensus 82 ~~~~~~l~~g~~Di~~~~~~t-~~-r~~~~~~s--~p~~~~~~~~v~~~~~~~~~~~~~l~-g~~i~~~~g~~~~~~l~~ 156 (267) T 3mpk_A 82 EELIAKLRSGEADMAGALFVN-SA-RESFLSFS--RPYVRNGMVIVTRQDPDAPVDADHLD-GRTVALVRNSAAIPLLQR 156 (267) T ss_dssp HHHHHHHHHTSCSEEEEEECC-GG-GTTTEEEC--SCSEEECEEEEEESSTTSCSSGGGCT-TCEEEEETTCTHHHHHHH T ss_pred HHHHHHHHCCCEEEEECCCCC-HH-HHHCCCCC--CCEECCCEEEEEECCCCCCCCHHHHC-CCCEEEECCCHHHHHHHH T ss_conf 999998636966599647899-88-98407767--62130440454201443457988965-873055415405699997 Q ss_pred HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHH----HHCCCCCC-CCCCCCHHHCCCCCCCCEEEEEEECCCCHHH Q ss_conf 423773103307679999986378765563014545----42162112-2233686673585432078999852761245 Q gi|254781037|r 141 WRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGI----KRLKKEKV-IKEILNIEDFPPSPGQGAICIETHVNNPKAQ 215 (307) Q Consensus 141 ~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl----~RL~l~~~-i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~ 215 (307) ..|+.+++... |..+-+..|..|++|+.+.-..-+ ++.+..+. +....+ + . ..-+++-++++|+.+. T Consensus 157 ~~~~~~i~~~~-~~~~~l~~L~~GrvDa~i~~~~~~~~~l~~~~~~~~~v~~~~~---~---~-~~~~~~~~~k~~~~L~ 228 (267) T 3mpk_A 157 RYPQAKVVTAD-NPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALD---L---P-PAEIALATTRGQTELM 228 (267) T ss_dssp HCTTSEEEEES-SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECS---S---C-CEEEEEEEETTCHHHH T ss_pred HCCCCEEEEEC-CHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCEEEEECCC---C---C-CEEEEEEEECCCHHHH T ss_conf 28874179980-6898778988798676842799999999838999769950467---7---7-5269999948999999 Q ss_pred HHHH Q ss_conf 5677 Q gi|254781037|r 216 ELVK 219 (307) Q Consensus 216 ~il~ 219 (307) +++. T Consensus 229 ~~in 232 (267) T 3mpk_A 229 SILN 232 (267) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 20 >3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Probab=92.86 E-value=0.44 Score=25.98 Aligned_cols=205 Identities=11% Similarity=0.102 Sum_probs=102.3 Q ss_pred CCCEEEEECCC--HHHHH--HH---HHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCC Q ss_conf 88289970798--88899--99---9999999974089983389999973274115875567486226999999998709 Q gi|254781037|r 3 KKPFRIGTRCS--PLALA--HA---FETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISG 75 (307) Q Consensus 3 ~~~i~IgtR~S--~LAl~--Qa---~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g 75 (307) +++||||+..+ |.... +- -...+.++.+...-+++++++.+. | .++..+|.+| T Consensus 20 ~~~l~vg~~~~~pP~~~~~~~g~~~G~~vdl~~~i~~~lg~~v~~~~~~-------------------~-~~~~~~l~~g 79 (268) T 3hv1_A 20 EKKIKIGFDATFVPMGYEEKDGSYIGFDIDLANAVFKLYGIDVEWQAID-------------------W-DMKETELKNG 79 (268) T ss_dssp HTEEEEEECTEETTTEEECTTSCEECHHHHHHHHHHHTTTCEEEEEECC-------------------G-GGHHHHHHHT T ss_pred CCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCEEECCCC-------------------H-HHHHHHHHCC T ss_conf 9979999878988955899999888729999999999969965751588-------------------8-9999999869 Q ss_pred CCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCC---CCCCCCCCCEEECCCCCHHHHH--------HHHHCC Q ss_conf 83699740343211101221012223656831056652432---4332456732204753028889--------984237 Q gi|254781037|r 76 EIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQ---SLKDLALHSVIGTSSLRRKALL--------LRWRSD 144 (307) Q Consensus 76 ~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~---~l~~lp~~a~IGTsS~RR~aql--------~~~~p~ 144 (307) ++|+++-.+-.-|.. ...+... .+--....+++.+++. ++.+| .+..||+....-.... ....++ T Consensus 80 ~~Di~~~~~~~~~~r-~~~~~~s--~py~~~~~~~v~~~~~~~~~~~dl-~~~~i~v~~gs~~~~~~~~~~~~~~~~~~~ 155 (268) T 3hv1_A 80 TIDLIWNGYSVTDER-KQSADFT--EPYMVNEQVLVTKKSSGIDSVAGM-AGKTLGAQAGSSGYDAFNASPKILKDVVAN 155 (268) T ss_dssp SCSEECSSCBCCHHH-HTTCEEC--CCCEEECEEEEEEGGGCCCSSGGG-TTCCEEEETTCHHHHHHHHCTTTTTTTSGG T ss_pred CCCCCCCCCCCCHHH-HHCEEEC--CCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEECCCHHHHHHHHHHHHHHHCCCC T ss_conf 976002326678544-4115632--121356436898689999997895-798238866850999999866555431667 Q ss_pred CCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC----CCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHH Q ss_conf 73103307679999986378765563014545421----62112223368667358543207899985276124556776 Q gi|254781037|r 145 ISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL----KKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKV 220 (307) Q Consensus 145 l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL----~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~ 220 (307) .+++.+. +.+.-+..|.+|++|+++.-..-+..+ +...... ..+ .+-..+ .+++-.+++|..+.+ . T Consensus 156 ~~i~~~~-~~~~~l~~L~~grvD~~i~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~-~~~~~~~k~~~~L~~---~ 225 (268) T 3hv1_A 156 QKVVQYS-TFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYN-VMP----AGYEGE-SFAVGARKVDKTLIK---K 225 (268) T ss_dssp GCEEEES-SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEE-EEE----CSSCCE-EECCEECTTCHHHHH---H T ss_pred CEEEECC-CHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCEE-ECC----CCCCCC-EEEEEEECCCHHHHH---H T ss_conf 3244039-99999999976975799943899999998589888303-337----777774-389998189999999---9 Q ss_pred HCCHHHHHH--HHHHHHHHHHHC Q ss_conf 239788888--788999998717 Q gi|254781037|r 221 INHEDTWDS--VNCERAFLAELD 241 (307) Q Consensus 221 Ind~~T~~~--v~aER~fL~~L~ 241 (307) +|..-.... -+.++-+-+-+| T Consensus 226 in~~l~~l~~~G~~~~I~~kw~g 248 (268) T 3hv1_A 226 INQGFETLYKNGEFQKISNKWFG 248 (268) T ss_dssp HHHHHHHHHHHTHHHHHHHHHHS T ss_pred HHHHHHHHHHCCHHHHHHHHHCC T ss_conf 99999999978799999999778 No 21 >3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} Probab=91.93 E-value=0.66 Score=24.79 Aligned_cols=148 Identities=9% Similarity=0.045 Sum_probs=79.9 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC----CCCCCCCCCCEEECCCCCH-HHHHHHHH Q ss_conf 999987098369974034321110122101222365683105665243----2433245673220475302-88899842 Q gi|254781037|r 68 IEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA----QSLKDLALHSVIGTSSLRR-KALLLRWR 142 (307) Q Consensus 68 le~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~----~~l~~lp~~a~IGTsS~RR-~aql~~~~ 142 (307) ...++.+|++|+ +.++-..|... ..+.... +-. ....+++.+.. +++++|. |.+||+-.-=- ..++.... T Consensus 62 ~~~~l~~g~~D~-~~~~~~~~~r~-~~~~fs~-p~~-~~~~~~~~~~~~~~~~~~~dl~-~~~i~v~~g~~~~~~l~~~~ 136 (234) T 3h7m_A 62 MFSALKSGRVDV-LQGISWSEKRA-RQIDFTP-PHT-IVYHAIFARRDSPPAAGLEDLR-GRKVALHRDGIMHEYLAERG 136 (234) T ss_dssp HHHHHHTTSSSE-EEEEECCHHHH-TTEEEEE-EEE-EEEEEEEEESSSCCCSSGGGGT-TSCEEEETTSHHHHHHHTTT T ss_pred HHHHHHCCCCCE-EECCCCCHHHC-CCCCCCC-CCC-CCCEEEEEEECCCCCCCHHHHC-CCEEEEECCCHHHHHHHHHC T ss_conf 999997799755-42102444331-4346577-644-2454999984033447867846-98243437987999999732 Q ss_pred CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHC Q ss_conf 37731033076799999863787655630145454216211222336866735854320789998527612455677623 Q gi|254781037|r 143 SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVIN 222 (307) Q Consensus 143 p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~In 222 (307) |+.+++.+. +...-+..|.+|++|+.+....-+..+-........ ....+...+.-+++-.++++.++ ...|| T Consensus 137 ~~~~~~~~~-~~~~~~~~l~~g~~D~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~~l---~~~ln 209 (234) T 3h7m_A 137 YGKDLVLTP-TPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNL---VPVARSIAAQRYGYAVRQGDAEL---LARFS 209 (234) T ss_dssp CGGGEEEES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTE---EEEEEEEEEEEEEEEEETTCHHH---HHHHH T ss_pred CCCCEEEEE-HHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCC---CCCCCCCCCCEEEEEEECCCHHH---HHHHH T ss_conf 577158841-157689999769956999417889999986688754---10256777752899995899999---99999 Q ss_pred CHHHH Q ss_conf 97888 Q gi|254781037|r 223 HEDTW 227 (307) Q Consensus 223 d~~T~ 227 (307) ..-.. T Consensus 210 ~~l~~ 214 (234) T 3h7m_A 210 EGLAI 214 (234) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 22 >2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus HB8} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A* Probab=91.87 E-value=0.46 Score=25.84 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=64.6 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHH--HHHHHH Q ss_conf 999999987098369974034321110122101222365683105665243243324567322047530288--899842 Q gi|254781037|r 65 TEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKA--LLLRWR 142 (307) Q Consensus 65 tkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~a--ql~~~~ 142 (307) ..+|.+++++|++|++.=|.=-.|..-.+-..+.++--.....-+++..+ ..++++. |.+|+.++--+.+ .++-+. T Consensus 39 p~~LN~~l~~g~~Dv~~iSs~~y~~~~~~y~llpsiss~G~v~sv~l~s~-~p~~~l~-~~~Ial~~~s~TS~~Llrill 116 (272) T 2czl_A 39 VETLNRWALEGRLPLTKLSYAAYAQVRDRYVALRSGGALGRGVGPLVVAR-GPLQALE-GLRVAVPGRHTTAYFLLSLYA 116 (272) T ss_dssp HHHHHHHHHTTCCSEEEEEHHHHTTCTTTEEECSSSCEEESSCCCEEEES-SCCSCCT-TCEEEESCTTSHHHHHHHHHC T ss_pred HHHHHHHHHCCCCCEEEHHHHHHHHCCCCEEECCCEEECCCCCCEEEEEC-CCHHHCC-CCEEEECHHHHHHHHHHHHHH T ss_conf 99999999849998860609999727276878374664589767599936-9845516-985974717778999999999 Q ss_pred CCCCCHHHCCCHHHHHHHHHCCCCCEEEE Q ss_conf 37731033076799999863787655630 Q gi|254781037|r 143 SDISVIDFRGKIETRLNKLNNNKAHAILL 171 (307) Q Consensus 143 p~l~~~~iRGNv~TRl~Kl~~g~~Daiil 171 (307) ++..-+..+ .+....-+.+|+.||.+| T Consensus 117 ~~~~~~~~~--~~~~~~~~~~~~~da~Ll 143 (272) T 2czl_A 117 QGFVPVEVR--YDRILPMVAQGEVEAGLI 143 (272) T ss_dssp SSCEEEECC--GGGHHHHHHTTSSSEEEE T ss_pred HHCCCCCCC--CCCCCCHHHCCCCCEEEE T ss_conf 756765577--014674444388772366 No 23 >3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Probab=91.13 E-value=0.8 Score=24.26 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=78.4 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCC--CEEEEECCCCCCCEEEEECCC--CCCCCCCCCCEEECCCCCHHH-HHHHH- Q ss_conf 999987098369974034321110122--101222365683105665243--243324567322047530288-89984- Q gi|254781037|r 68 IEKKLISGEIDCAVHSAKDMPTKLLKG--LQISAYLPREDIRDVFISHTA--QSLKDLALHSVIGTSSLRRKA-LLLRW- 141 (307) Q Consensus 68 le~aLl~g~iDiAVHSlKDlP~~~~~~--l~i~a~~~R~d~rD~lv~~~~--~~l~~lp~~a~IGTsS~RR~a-ql~~~- 141 (307) .-++|..|++|+++-..=-+-.....| +.+.+..-..++.-.++.++. +++.|| +|.+||+++.--.. .+... T Consensus 47 ~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~i~~~~DL-kGK~v~~~~~~~~~~~l~~~l 125 (302) T 3ix1_A 47 PIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADL-VGLTVGYPGIPVNEPILKTMV 125 (302) T ss_dssp HHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGG-TTSEEEECSCTTHHHHHHHHH T ss_pred HHHHHHCCCCCEEEECHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHH-CCCCCCCCCCCHHHHHHHHHH T ss_conf 9999977998989977589999873348858998540589736998537798887895-676221789977899999999 Q ss_pred ------HCCCCCHHHCCCHHHHHHHHHCCCCCEEEEE-----HHHHHHCCCCCCCCCCCCHHH-CCCCCCCCEEEEEE-- Q ss_conf ------2377310330767999998637876556301-----454542162112223368667-35854320789998-- Q gi|254781037|r 142 ------RSDISVIDFRGKIETRLNKLNNNKAHAILLA-----YAGIKRLKKEKVIKEILNIED-FPPSPGQGAICIET-- 207 (307) Q Consensus 142 ------~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA-----~Agl~RL~l~~~i~~~l~~~~-~~PA~gQGaIaIe~-- 207 (307) ..+++++++..+.. .-|.+|+.||++.. .+.++..|.... .++... -+|...+..++..- T Consensus 126 ~~~Gl~~~~v~~v~~~~~~~---~al~~G~iDa~~~~~~~~~~~~~~~~g~~~~---~~~~~~~g~~~~~~~~~~~~~~~ 199 (302) T 3ix1_A 126 EAAGGDYEQVHLMDVGFELG---ASIVSGRADAVVGTYINHEYPVLKHEGHDIS---YFNPVDYGVPEYDELVLISNEAY 199 (302) T ss_dssp HHTTCCGGGCEEEECTTCHH---HHHHHSSSSEEEEEETTTHHHHHHHTTCCEE---EECGGGTTCCCCCSEEEEEEHHH T ss_pred HHCCCCCCCEEEECCCCCHH---HHHHCCCCCEECCCCCCCHHHHHHHCCCCCC---CCCHHHCCCCCCCCCCEECCHHH T ss_conf 97289976117845884389---9998599770006546608999986287632---22588709888766311046999 Q ss_pred ECCCC-HHHHHHHHHCC Q ss_conf 52761-24556776239 Q gi|254781037|r 208 HVNNP-KAQELVKVINH 223 (307) Q Consensus 208 r~~d~-~i~~il~~Ind 223 (307) .++++ .++.+++.+.. T Consensus 200 ~~~~p~~v~~f~~A~~~ 216 (302) T 3ix1_A 200 VEESGEVLAAFWRAALK 216 (302) T ss_dssp HHHCHHHHHHHHHHHHH T ss_pred HHHCHHHHHHHHHHHHH T ss_conf 98796999999999999 No 24 >2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme pcc 73102} Probab=90.83 E-value=0.86 Score=24.07 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=78.3 Q ss_pred CCCEEEEECCCH---------HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH Q ss_conf 882899707988---------88999999999999740899833899999732741158755674862269999999987 Q gi|254781037|r 3 KKPFRIGTRCSP---------LALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLI 73 (307) Q Consensus 3 ~~~i~IgtR~S~---------LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl 73 (307) +++|+|||+..| +.=.-.+.+....++. +++++++.+.+ -.++-++|. T Consensus 2 ~~~l~v~~~~~PPf~~~~~g~~~G~~~di~~~i~~~l----g~~~~~v~~~~-------------------~~~~~~~l~ 58 (228) T 2pyy_A 2 QQPLLVATRVIPPFVLSNKGELSGFSIDLWRSIATQI----GIESKLIEYSS-------------------VPELISAIK 58 (228) T ss_dssp --CEEEEECCBTTTBBCC---CBSHHHHHHHHHHHHH----TCCEEEEECSS-------------------HHHHHHHHH T ss_pred CCCEEEEECCCCCEEECCCCEEEEEHHHHHHHHHHHH----CCCEEEEECCC-------------------HHHHHHHHH T ss_conf 9648999677198187449968885999999999996----99739996799-------------------999999998 Q ss_pred CCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC-------CCCCCCCCCCCEEECCCCCHHHHHHHHHCCCC Q ss_conf 09836997403432111012210122236568310566524-------32433245673220475302888998423773 Q gi|254781037|r 74 SGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHT-------AQSLKDLALHSVIGTSSLRRKALLLRWRSDIS 146 (307) Q Consensus 74 ~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~-------~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~ 146 (307) +|++|+++=++=.-|. ....+.... +.-.++ -+++.+. ..++++|....+.+.....-...++. +..+ T Consensus 59 ~g~~Di~~~~~~~t~~-r~~~~~~s~-p~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~i~~~~g~~~~~~l~~--~~~~ 133 (228) T 2pyy_A 59 DNKVNLGIAAISITAE-REQNFDFSL-PIFASG-LQIMVRNLESGTGDIRSIDDLPGKVVATTAGSTAATYLRE--HHIS 133 (228) T ss_dssp TTSCSEECSSCBCCHH-HHHHSEECS-CSEEEE-EEEEEEC-----CCCCSGGGCTTCEEEEETTSHHHHHHHH--TTCE T ss_pred CCCCCEEEECCCCCHH-HHHHCCCCC-CCCCCC-CEEEEECCCCCCCCCCCHHHCCCCEEEECCCCHHHHHHHH--HHCC T ss_conf 5997667102557988-985344678-721256-1367631445653458878829988984389689999987--5202 Q ss_pred CHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC Q ss_conf 103307679999986378765563014545421 Q gi|254781037|r 147 VIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307) Q Consensus 147 ~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307) +.. .-+.+.-++.|..|++|+.+.....+..+ T Consensus 134 ~~~-~~~~~~~~~~l~~gr~d~~i~~~~~~~~~ 165 (228) T 2pyy_A 134 VLE-VPKIEEAYKALQTKKADAVVFDAPVLLFY 165 (228) T ss_dssp EEE-ESSHHHHHHHHHTTSSSEEEEEHHHHHHH T ss_pred CHH-HHHHHHHHHHHHCCCEEEEEECHHHHHHH T ss_conf 111-32488888786459467999631888999 No 25 >3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Probab=90.71 E-value=0.88 Score=24.01 Aligned_cols=149 Identities=18% Similarity=0.186 Sum_probs=82.6 Q ss_pred CCEEEEECCCHHH--HHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 8289970798888--99999999999974089983389999973274115875567486226999999998709836997 Q gi|254781037|r 4 KPFRIGTRCSPLA--LAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307) Q Consensus 4 ~~i~IgtR~S~LA--l~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307) .+||||-=..... +++.+ ..+++. .++++++++.+.+ | -+.-++|..|++|+++ T Consensus 29 ~~lrIg~~~~~~~~~va~~~---G~f~~~--~~~~~v~~~~~~~----------------g---~~~~~al~sG~~D~~~ 84 (324) T 3ksx_A 29 AQLRIGYQKAVSSLVLAKQH---RLLEQR--FPRTKITWVEFPA----------------G---PQLLEALNVGSIDLGG 84 (324) T ss_dssp SEEEEEEETTCHHHHHHHHH---THHHHH--CTTSEEEEEEESS----------------H---HHHHHHHHTTSCSEEE T ss_pred CEEEEEEECCCCHHHHHHHH---CHHHHH--CCCCCEEEEECCC----------------H---HHHHHHHHCCCCCEEE T ss_conf 75999961686579999984---869783--8998279997897----------------7---9999999849928896 Q ss_pred ECCCCCCCCCCCC--CEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCCCCHH-HHHHHH-------HCCCCCH Q ss_conf 4034321110122--101222365683105665243---24332456732204753028-889984-------2377310 Q gi|254781037|r 82 HSAKDMPTKLLKG--LQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSSLRRK-ALLLRW-------RSDISVI 148 (307) Q Consensus 82 HSlKDlP~~~~~~--l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS~RR~-aql~~~-------~p~l~~~ 148 (307) -+.=..-.....| +.+.+...+....+.++.+.. +++.|| +|-+||++..--. ..+.+. ..|++++ T Consensus 85 ~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~iv~~~~s~i~s~~DL-kGK~v~v~~gs~~~~~l~~~L~~~Gl~~~dV~~v 163 (324) T 3ksx_A 85 AGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKSALRTVADL-KGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPL 163 (324) T ss_dssp EESHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGG-TTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEE T ss_pred ECHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCCCCHHHH-CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEE T ss_conf 465999999987998599998963798428998089999997893-8998987568730679999999879973235401 Q ss_pred HHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC Q ss_conf 3307679999986378765563014545421 Q gi|254781037|r 149 DFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307) Q Consensus 149 ~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307) ++ +......-|.+|+.|+.++...-...+ T Consensus 164 ~~--~~~~~~~al~~G~vDa~~~~~p~~~~~ 192 (324) T 3ksx_A 164 YL--SPANARAAFAAGQVDAWAIWDPWYSAL 192 (324) T ss_dssp EC--CHHHHHHHHHTTCCSEEEEETTHHHHH T ss_pred EC--CHHHHHHHHHCCCCCEEEECCHHHHHH T ss_conf 25--826666665313500999815799999 No 26 >1ii5_A Hypothetical protein SLR1257; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Probab=90.00 E-value=1 Score=23.62 Aligned_cols=153 Identities=11% Similarity=0.167 Sum_probs=81.2 Q ss_pred CCCCEEEEECCCH-HHHH---HH-------HHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHH Q ss_conf 9882899707988-8899---99-------99999999740899833899999732741158755674862269999999 Q gi|254781037|r 2 EKKPFRIGTRCSP-LALA---HA-------FETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEK 70 (307) Q Consensus 2 ~~~~i~IgtR~S~-LAl~---Qa-------~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~ 70 (307) +-++||||+..++ .... +. -.+.+++.+.. +++++++... + -+++-. T Consensus 2 ~a~~LrVg~~~~pPf~~~~~~~~g~~~G~~vdl~~~ia~~~---g~~~~~v~~~---------~----------~~~~~~ 59 (233) T 1ii5_A 2 SAMALKVGVVGNPPFVFYGEGKNAAFTGISLDVWRAVAESQ---KWNSEYVRQN---------S----------ISAGIT 59 (233) T ss_dssp CSCCEEEEECCCTTTCEEC-----CEESHHHHHHHHHHHHH---TCCEEEEECS---------C----------HHHHHH T ss_pred CCCCEEEEEECCCCCEEEECCCCCCEEEHHHHHHHHHHHHH---CCCEEEEECC---------C----------HHHHHH T ss_conf 97877999947999766534999928878999999999983---9974999569---------9----------999999 Q ss_pred HHHCCCCEEEEECCCCCCCCC-CCCCEEEEECCCCCCCEEEEECCC----CCCCCCCCCCEEECCCCCHHHHHHHHHCCC Q ss_conf 987098369974034321110-122101222365683105665243----243324567322047530288899842377 Q gi|254781037|r 71 KLISGEIDCAVHSAKDMPTKL-LKGLQISAYLPREDIRDVFISHTA----QSLKDLALHSVIGTSSLRRKALLLRWRSDI 145 (307) Q Consensus 71 aLl~g~iDiAVHSlKDlP~~~-~~~l~i~a~~~R~d~rD~lv~~~~----~~l~~lp~~a~IGTsS~RR~aql~~~~p~l 145 (307) +|.+|++|+++.++.--|..- ...+.... +--....-.++.++. .++.+|. |..+|...---..... ..|.. T Consensus 60 ~l~~g~~Di~~~~~~~t~eR~~~~~~~fs~-p~~~~~~~~~~~~~~~~~~~~~~dl~-g~~i~~~~g~~~~~~~-~~~~~ 136 (233) T 1ii5_A 60 AVAEGELDILIGPISVTPERAAIEGITFTQ-PYFSSGIGLLIPGTATPLFRSVGDLK-NKEVAVVRDTTAVDWA-NFYQA 136 (233) T ss_dssp HHHTTSCSEEEEEEECCHHHHTSTTEEECC-CCEEEEEEEEEEGGGTTTCSSGGGGT-TCEEEEETTSHHHHHH-HHTTC T ss_pred HHHCCCCCEEEECCCCCHHHHHHHCCCCCC-CCCCCCCEEEEEECCCCCCCCHHHHH-HHHCCCCCCCHHHHHH-HCCCC T ss_conf 998699876741156886776443023467-74225733688511222456688875-4230556886899998-55366 Q ss_pred CCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCC Q ss_conf 31033076799999863787655630145454216 Q gi|254781037|r 146 SVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLK 180 (307) Q Consensus 146 ~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~ 180 (307) +++..- +.++-+.+|.+|+.|+++....-+..+- T Consensus 137 ~i~~~~-~~~~~~~~l~~grvD~~v~~~~~~~~~~ 170 (233) T 1ii5_A 137 DVRETN-NLTAAITLLQKKQVEAVMFDRPALIYYT 170 (233) T ss_dssp EEEEES-SHHHHHHHHHTTSCSEEEEEHHHHHHHH T ss_pred CCCCCC-CHHHHHHHHHCCEEEEEECCHHHHHHHH T ss_conf 421357-4799999986591799978699999999 No 27 >2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A Probab=88.03 E-value=1.4 Score=22.74 Aligned_cols=112 Identities=14% Similarity=0.074 Sum_probs=64.2 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCC--CCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCCC--------- Q ss_conf 999998709836997403432111012--2101222365683105665243---24332456732204753--------- Q gi|254781037|r 67 EIEKKLISGEIDCAVHSAKDMPTKLLK--GLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSSL--------- 132 (307) Q Consensus 67 ele~aLl~g~iDiAVHSlKDlP~~~~~--~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS~--------- 132 (307) +.-++|..|.+|+++.+.=-+-..... .+.+.+...... ..+++.+.. ++.+|| +|-+||.++. T Consensus 59 ~~~~al~~G~~D~~~~~~~~~~~a~~~g~~~~~i~~~~~~~-~~~l~v~~~s~I~s~~DL-kGk~i~v~~~~~~~~~~~~ 136 (365) T 2de3_A 59 VHFTYDQPAYTRFGGEIPPLLSEGLRAPGRTRLLGITPLLG-RQGFFVRDDSPITAAADL-AGRRIGVSASAIRILRGQL 136 (365) T ss_dssp HHHHCCSTTEEEEECSHHHHHHHHTTCTTSEEEEEEEEECC-SEEEEEETTCSCCSGGGG-TTCEEEECHHHHHHHHTCC T ss_pred HHHHHHHCCCCCEEEECHHHHHHHHHCCCCEEEEEEEECCC-CEEEEEECCCCCCCHHHH-CCCEEECCCCCCCHHHHHH T ss_conf 99999975983789305899999974899869999974388-508999788777886997-8983502566420135666 Q ss_pred -------------------CHHHHHHHH------HCCCCCHHHC------------------------CCHHHHHHHHHC Q ss_conf -------------------028889984------2377310330------------------------767999998637 Q gi|254781037|r 133 -------------------RRKALLLRW------RSDISVIDFR------------------------GKIETRLNKLNN 163 (307) Q Consensus 133 -------------------RR~aql~~~------~p~l~~~~iR------------------------GNv~TRl~Kl~~ 163 (307) -.......+ ..|++++++. ......+.-|.+ T Consensus 137 ~~~~~~~~~~~~~~~~gs~~~~~l~~~l~~~Gl~~~dV~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aAL~~ 216 (365) T 2de3_A 137 GDYLELDPWRQTLVALGSWEARALLHTLEHGELGVDDVELVPISSPGVDVPAEQLEESATVKGADLFPDVARGQAAVLAS 216 (365) T ss_dssp TTGGGSCHHHHHHHHTTHHHHHHHHHHHHHTTCCGGGSEEEECCCTTTCCCHHHHHHSSBSSHHHHSTTHHHHHHHHHHS T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC T ss_conf 54310233321245778679999999999849998993762048044444443100001344432123442048999976 Q ss_pred CCCCEEEEEHHHHHHCC Q ss_conf 87655630145454216 Q gi|254781037|r 164 NKAHAILLAYAGIKRLK 180 (307) Q Consensus 164 g~~DaiilA~Agl~RL~ 180 (307) |+.||.++...-...+. T Consensus 217 G~VDA~~~~~P~~~~~~ 233 (365) T 2de3_A 217 GDVDALYSWLPWAGELQ 233 (365) T ss_dssp SSCSEEEEEHHHHHHHH T ss_pred CCEEEEEECCHHHHHHH T ss_conf 98269996575599998 No 28 >2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} Probab=84.23 E-value=2.1 Score=21.50 Aligned_cols=208 Identities=14% Similarity=0.135 Sum_probs=98.2 Q ss_pred CCEEEEECCC--HHHHH-H-------HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH Q ss_conf 8289970798--88899-9-------999999999740899833899999732741158755674862269999999987 Q gi|254781037|r 4 KPFRIGTRCS--PLALA-H-------AFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLI 73 (307) Q Consensus 4 ~~i~IgtR~S--~LAl~-Q-------a~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl 73 (307) ++|+||+..+ |+.-. . .-.+.+.+.+. .+++++++++.. | .++-.+|. T Consensus 16 ~~i~V~~~~~~pP~~~~~~~g~~~G~~vDl~~~ia~~--l~g~~v~~~~~~-------------------~-~~~~~~l~ 73 (258) T 2o1m_A 16 QTITVGTGTQFPNICFIDEKGDLTGYDVELIKELDKR--LPHYKFTFKTME-------------------F-SNLLVSLG 73 (258) T ss_dssp EEEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHH--CTTEEEEEEECC-------------------H-HHHHHHHH T ss_pred CEEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHH--CCCCEEEEEECC-------------------H-HHHHHHHH T ss_conf 9899998999798069999996887599999999987--289858999789-------------------9-99999997 Q ss_pred CCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEE-CC---CCCCCCCCCCCEEECCCCCHHH-HHHHHHC----C Q ss_conf 098369974034321110122101222365683105665-24---3243324567322047530288-8998423----7 Q gi|254781037|r 74 SGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFIS-HT---AQSLKDLALHSVIGTSSLRRKA-LLLRWRS----D 144 (307) Q Consensus 74 ~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~-~~---~~~l~~lp~~a~IGTsS~RR~a-ql~~~~p----~ 144 (307) +|++|++.-++---|- ....+.... +......-.++. ++ -.+++|| .|-+||.-.--... .+..+.+ . T Consensus 74 ~g~~D~i~~~~~~~~e-r~~~~~fs~-~~~~~~~~~~~~~~~~~~i~~~~dL-~gk~igv~~g~~~~~~l~~~~~~~~~~ 150 (258) T 2o1m_A 74 QHKVDIVAHQMEKSKE-REKKFLFNK-VAYNHFPLKITVLQNNDTIRGIEDL-KGKRVITSATSNGALVLKKWNEDNGRP 150 (258) T ss_dssp TTSSSEEEEEECCCHH-HHHHCEECS-SCCEEEEEEEEEETTCCSCSSGGGC-TTCEEEECSSSHHHHHHHHHHHHTTCC T ss_pred CCCCCEEEECCCCCHH-HHHHCCCCC-CCCCCCCEEEEEEECCCCCCCHHHC-CCCEEEECCCCHHHHHHHHHHHHCCCC T ss_conf 7998889634767878-875313675-4223554289985136765515445-798898707874999999999971887 Q ss_pred CCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCH Q ss_conf 73103307679999986378765563014545421621122233686673585432078999852761245567762397 Q gi|254781037|r 145 ISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHE 224 (307) Q Consensus 145 l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~ 224 (307) ..+.---.+.+.-+..|.+|.+|+.+.....+..+...... ......+..-..-+++-.+++|+. ++..+|.. T Consensus 151 ~~~~~~~~~~~~~~~~L~~grvD~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~k~~~~---L~~~ln~~ 223 (258) T 2o1m_A 151 FEIAYEGQGANETANQLKSGRADATISTPFAVDFQNKTSTI----KEKTVGNVLSNAKVYFMFNKNEQT---LSDDIDKA 223 (258) T ss_dssp SEEEECCSSTTHHHHHHHHTSCSBEEECHHHHHHHHHHCSS----CEEEEEEEEEEEEEEEEECTTCHH---HHHHHHHH T ss_pred CCCEECCCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCC----CEEEECCCCCCCCEEEEEECCCHH---HHHHHHHH T ss_conf 42010368899999998659546999169999999852788----658815667775189999599999---99999999 Q ss_pred HHHHHH--HHHHHHHHHHCCC Q ss_conf 888887--8899999871776 Q gi|254781037|r 225 DTWDSV--NCERAFLAELDGS 243 (307) Q Consensus 225 ~T~~~v--~aER~fL~~L~Gg 243 (307) -..... +.+|-+-+-||-+ T Consensus 224 l~~~~~dG~~~~I~~Kw~g~d 244 (258) T 2o1m_A 224 LQEIIDDGTLKRLSLKWLGDD 244 (258) T ss_dssp HHHHHHTTHHHHHHHHHTCTT T ss_pred HHHHHHCCHHHHHHHHHCCCC T ss_conf 999996859999999877998 No 29 >3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus} Probab=82.16 E-value=2.6 Score=20.98 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=73.6 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 98828997079888899999999999974089983389999973274115875567486226999999998709836997 Q gi|254781037|r 2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307) Q Consensus 2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307) ++++++||+-.+-.+..-...+ ..+.+.+ |++++++.... ..++.+.|.+|++|+|+ T Consensus 17 ~~~~~rI~~~~~~~~~~lp~ll-~~l~~~~--P~v~i~l~~~~--------------------~~~~~~~L~~g~iDl~I 73 (241) T 3oxn_A 17 CDQTFTIATTDYAMQTILPFAL-PRIYQEA--PNVSFNFLPLQ--------------------HDRLSDQLTYEGADLAI 73 (241) T ss_dssp CCCEEEEEECSHHHHHTHHHHH-HHHHHHC--TTCEEEEEECC--------------------GGGHHHHHHTSCCSEEE T ss_pred CCCEEEEEECHHHHHHHHHHHH-HHHHHHC--CCCEEEEEECC--------------------HHHHHHHHHCCCCCEEE T ss_conf 6868999973799999999999-9999988--69289999798--------------------79999999759854222 Q ss_pred ECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC------CCCCCCCCCCCEEECC-CCCHHHHHHHHH---CCCCCHHHC Q ss_conf 403432111012210122236568310566524------3243324567322047-530288899842---377310330 Q gi|254781037|r 82 HSAKDMPTKLLKGLQISAYLPREDIRDVFISHT------AQSLKDLALHSVIGTS-SLRRKALLLRWR---SDISVIDFR 151 (307) Q Consensus 82 HSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~------~~~l~~lp~~a~IGTs-S~RR~aql~~~~---p~l~~~~iR 151 (307) ... + ..++++..-.+ ..++--+++.++ ..+++++..---|..+ +......+.... ..-++.--- T Consensus 74 ~~~-~---~~~~~l~~~~l--~~~~~v~v~~~~HPl~~~~~t~~dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 147 (241) T 3oxn_A 74 CRP-T---GPVEPLRSEIL--GRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALIDKPQRKMVLRA 147 (241) T ss_dssp ECC-S---SCCTTEEEEEE--ECCCEEEEEETTSGGGGSCCCHHHHHTSEEEECSCCHHHHHHHHHHSTTSCCCEEEEEC T ss_pred ECC-C---CCCCCCCCCCC--CCCCCEEECCCCCHHHHCCCCHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEE T ss_conf 026-7---87410113543--22364022376650320258899995298699957998623999999967999855996 Q ss_pred CCHHHHHHHHHCCCCCEEEEEH Q ss_conf 7679999986378765563014 Q gi|254781037|r 152 GKIETRLNKLNNNKAHAILLAY 173 (307) Q Consensus 152 GNv~TRl~Kl~~g~~DaiilA~ 173 (307) .+..+=+.-+..|.+=+ ++.. T Consensus 148 ~s~~~~~~lv~~~~~i~-ilP~ 168 (241) T 3oxn_A 148 YHLEAALAIVDTLPIII-TVPA 168 (241) T ss_dssp SSTHHHHHHC--CCCEE-EEEH T ss_pred CCHHHHHHHHHCCCEEE-EHHH T ss_conf 78999999997599799-8799 No 30 >1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1 Probab=79.85 E-value=3.1 Score=20.47 Aligned_cols=139 Identities=15% Similarity=0.064 Sum_probs=72.7 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974 Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307) Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307) .++||||==.++= .|-..-...+.... .+.++|++ .+| ..+|.+++.+|++|++.= T Consensus 9 ~~~i~ig~sp~~~---d~~~f~al~~g~~~-~~~~~e~~----~~d----------------~~~LN~~l~~G~lDv~~i 64 (280) T 1zbm_A 9 SHKIRVAHTPDAD---DAFMFYAMTHGKVD-TWLEIEHV----IED----------------IETLNRKAFNAEYEVTAI 64 (280) T ss_dssp TCEEEEEECSSHH---HHHHHHHHHTTCSC-CSCEEEEE----ECC----------------HHHHHHHGGGTCCSEEEE T ss_pred CCEEEEEECCCCC---HHHHHHHHHCCCCC-CCCCCEEE----ECC----------------HHHHHHHHHCCCCCEEEH T ss_conf 6417999779996---38887899839978-99863586----479----------------999999998699999717 Q ss_pred CCCCCCCCCCCCCE--EEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHH--HHHHCCCCCHHHCCCHHHHH Q ss_conf 03432111012210--122236568310566524324332456732204753028889--98423773103307679999 Q gi|254781037|r 83 SAKDMPTKLLKGLQ--ISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALL--LRWRSDISVIDFRGKIETRL 158 (307) Q Consensus 83 SlKDlP~~~~~~l~--i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql--~~~~p~l~~~~iRGNv~TRl 158 (307) |.=..+....+... .+++..+. +--.++++.. .+| +|.+|++++....+.+ +.+..+...++++ ..+-. T Consensus 65 Ss~~y~~~~~~y~lLp~~s~~~~g-~~~~v~~~~~---~~L-~gk~ial~~~stTs~~Ll~ill~~~~~~~~~--~~~~~ 137 (280) T 1zbm_A 65 SAHAYALLDDKYRILSAGASVGDG-YGPVVVAKSE---ISL-DGKRIAVPGRYTTANLLLKLAVEDFEPVEMP--FDRII 137 (280) T ss_dssp EHHHHTTSTTTEEECSSCCEEESS-CCCEEEESSC---CCC-TTCEEEESCTTSHHHHHHHHHCSSCEEEECC--GGGHH T ss_pred HHHHHHHCCCCEEECCCEEEEECC-CEEEEEECCC---CCC-CCCEEEECCCCCHHHHHHHHHHHCCCCCCCC--HHHCC T ss_conf 199999442406687863884047-6148996776---677-8987985698719999999998516761368--65335 Q ss_pred HHHHCCCCCEEEEE Q ss_conf 98637876556301 Q gi|254781037|r 159 NKLNNNKAHAILLA 172 (307) Q Consensus 159 ~Kl~~g~~DaiilA 172 (307) ..+..|+.||.++- T Consensus 138 ~al~~g~~Da~llI 151 (280) T 1zbm_A 138 QAVLDEEVDAGLLI 151 (280) T ss_dssp HHHHTTSSSEEEEC T ss_pred CHHHCCCCCCCEEC T ss_conf 05444888703155 No 31 >3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A Probab=79.02 E-value=3.3 Score=20.31 Aligned_cols=58 Identities=10% Similarity=-0.001 Sum_probs=45.0 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974 Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307) Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307) .|+|+||+=.-.=+.+.|+.+...|++. ++++|++. |+. ..+-.+|.+|+||+.+- T Consensus 1 dk~i~i~~~~wt~~~~~a~i~~~~Le~~----Gy~Ve~~~----~~~----------------~~~~~al~~G~iDi~~e 56 (256) T 3l6g_A 1 DKKVDLVYMNWDSEVASINVLTQAMKEH----GFDVKTTA----LDN----------------AVAWQTVANGQADGMVS 56 (256) T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHT----TEEEEEEE----CCH----------------HHHHHHHHTTSSSEEEE T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHC----CCCEEEEE----CCC----------------HHHHHHHHCCCCCEEEE T ss_conf 9748993269847999999999999986----99459987----884----------------89999998799829851 Q ss_pred CC Q ss_conf 03 Q gi|254781037|r 83 SA 84 (307) Q Consensus 83 Sl 84 (307) .+ T Consensus 57 ~w 58 (256) T 3l6g_A 57 AW 58 (256) T ss_dssp EE T ss_pred CC T ss_conf 14 No 32 >2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A Probab=77.90 E-value=3.5 Score=20.10 Aligned_cols=190 Identities=12% Similarity=0.056 Sum_probs=96.2 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 98828997079888899999999999974089983389999973274115875567486226999999998709836997 Q gi|254781037|r 2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307) Q Consensus 2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307) +.++|+||+-+-.=+.++|+.+...|++. |++++++ .|+ +..+-.+|.+|+||+-+ T Consensus 5 ~~~~V~ig~~~w~~~~~~a~i~~~vLe~~----Gy~Ve~~----~~~----------------~~~~~~al~~GdID~~~ 60 (298) T 2rin_A 5 SCGTVRFSDVGWTDITATTATATTILEAL----GYETDVK----VLS----------------VPVTYTSLKNKDIDVFL 60 (298) T ss_dssp CTTEEEEECCSCHHHHHHHHHHHHHHHHH----TCEEEEE----CCC----------------HHHHHHHHHHTSCCEEE T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHC----CCCEEEE----ECC----------------HHHHHHHHHCCCCEEEE T ss_conf 48976997469766999999999999986----9924898----687----------------09999999879980884 Q ss_pred ECCCCCCC-------CCCC-CCEEEEECCCCCCCEEEEECCC------CCCCCCCCC------CEEECCC--CCHHH--- Q ss_conf 40343211-------1012-2101222365683105665243------243324567------3220475--30288--- Q gi|254781037|r 82 HSAKDMPT-------KLLK-GLQISAYLPREDIRDVFISHTA------QSLKDLALH------SVIGTSS--LRRKA--- 136 (307) Q Consensus 82 HSlKDlP~-------~~~~-~l~i~a~~~R~d~rD~lv~~~~------~~l~~lp~~------a~IGTsS--~RR~a--- 136 (307) -.+ +|+ ...+ .+....... .+.+..+..+.+ +++++|.+. ..+|..+ .+... T Consensus 61 e~W--~p~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~~~a~~~i~sisDL~~~~~~~~~~i~g~~~~~~~~~~~~~ 137 (298) T 2rin_A 61 GNW--MPTMEADIAPYREDKSVETVRENL-AGAKYTLATNAKGAELGIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIID 137 (298) T ss_dssp EEE--ETTTHHHHHHHHTTTSEEEEEEEE-EEEEEEEEEEHHHHHHTCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHH T ss_pred ECC--CCCCHHHHHHHHHHCCCEECCCCC-CCCEEEEEECCHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHH T ss_conf 046--640016679988614531114445-68615887530444427674777765355237746722564222433145 Q ss_pred HHHHHHCCCCCH-HHCCCHHHHH----HHHHCCCCCEEEEEH--HHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEC Q ss_conf 899842377310-3307679999----986378765563014--545421621122233686673585432078999852 Q gi|254781037|r 137 LLLRWRSDISVI-DFRGKIETRL----NKLNNNKAHAILLAY--AGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHV 209 (307) Q Consensus 137 ql~~~~p~l~~~-~iRGNv~TRl----~Kl~~g~~DaiilA~--Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~ 209 (307) +++.+.-++... ...+....=+ +.+.+|+.+.+-.=. .-+..++|. .-..|...|.|.-+-.-+....|+ T Consensus 138 ~~~~~~~~~~~~~~~~~s~~a~~a~l~~A~~~~~~~v~~~w~p~~~~~~~dL~---~LeDp~~~~~~~~~a~~v~~v~~~ 214 (298) T 2rin_A 138 MVEKGTFDLKGFEVVESSEQGMLAQVARAEKSGDPIVFLGWEPHPMNANFKLT---YLSGGDDVFGPNYGGATVHTNVRA 214 (298) T ss_dssp HHHHTGGGCTTCEEECCCHHHHHHHHHHHHHTTCCCEEEEEESSTHHHHSCEE---ECBSCTTTTCHHHHEEEEEEEEET T ss_pred HHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEE---EECCCCCCCCCCCCCHHHHHHHHH T ss_conf 66650268876542046467799999999846885799826873222037647---805885446888762000028756 Q ss_pred C----CCHHHHHHHHH Q ss_conf 7----61245567762 Q gi|254781037|r 210 N----NPKAQELVKVI 221 (307) Q Consensus 210 ~----d~~i~~il~~I 221 (307) + .+++.++|+++ T Consensus 215 ~~~~~~P~~~~~L~~~ 230 (298) T 2rin_A 215 GYTTECPNVDKLLQNL 230 (298) T ss_dssp THHHHSHHHHHHHHHC T ss_pred HHHHHCHHHHHHHHHC T ss_conf 6777697999999967 No 33 >1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, non-classical hydrogen bonds; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A Probab=76.48 E-value=3.9 Score=19.84 Aligned_cols=59 Identities=15% Similarity=-0.015 Sum_probs=44.4 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 98828997079888899999999999974089983389999973274115875567486226999999998709836997 Q gi|254781037|r 2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307) Q Consensus 2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307) +.++|+||+-.-.=+.+.|+.+...|++. ++++|+++ +.|| +-.+-.+|-+|++|+.+ T Consensus 4 ~~~~v~Ig~~~w~~~~~~a~i~~~~Le~~----Gy~Ve~~~--~~~~----------------~~~~~~al~~GdiDv~~ 61 (275) T 1sw5_A 4 SSERVVIGSKPFNEQYILANMIAILLEEN----GYKAEVKE--GLGG----------------TLVNYEALKRNDIQLYV 61 (275) T ss_dssp --CCEEECCCSSHHHHHHHHHHHHHHHHT----TCCEEECT--TCCS----------------HHHHHHHHHHTSSSEEE T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHC----CCCEEEEE--CCCC----------------HHHHHHHHHCCCCCEEE T ss_conf 89987996788859999999999999986----99659986--4786----------------08899999769977897 Q ss_pred E Q ss_conf 4 Q gi|254781037|r 82 H 82 (307) Q Consensus 82 H 82 (307) - T Consensus 62 e 62 (275) T 1sw5_A 62 E 62 (275) T ss_dssp E T ss_pred E T ss_conf 3 No 34 >3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} Probab=75.30 E-value=4.1 Score=19.65 Aligned_cols=213 Identities=18% Similarity=0.128 Sum_probs=108.6 Q ss_pred CCCCCEEEEECCC--HHHHHHH---------HHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHH Q ss_conf 9988289970798--8889999---------9999999974089983389999973274115875567486226999999 Q gi|254781037|r 1 MEKKPFRIGTRCS--PLALAHA---------FETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIE 69 (307) Q Consensus 1 M~~~~i~IgtR~S--~LAl~Qa---------~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele 69 (307) |+ ..|+||+..+ |+..... ..+.+++.+. -+++++++... -+ ++. T Consensus 1 ~s-~~l~vg~~~~~pP~~~~~~~~g~~~G~~~dl~~~ia~~---~g~~~~~~~~~--~~------------------~~~ 56 (237) T 3kzg_A 1 MS-LNLTIGTSKFNPPFEVWSGNNSSLYGFDIDLMQEICRR---LHATCTFEAYI--FD------------------DLF 56 (237) T ss_dssp -C-CEEEEEEESEETTTEECCCTTSCCBSHHHHHHHHHHHH---TTCEEEEEEEC--GG------------------GHH T ss_pred CC-CCEEEEECCCCCCCEEEECCCCCEEEEHHHHHHHHHHH---HCCCEEEEECC--HH------------------HHH T ss_conf 98-75899989998983689899992887399999999999---69975999779--99------------------999 Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCC---CCCCCCCCCEEECCCCC-HHHHHHHHHCCC Q ss_conf 99870983699740343211101221012223656831056652432---43324567322047530-288899842377 Q gi|254781037|r 70 KKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQ---SLKDLALHSVIGTSSLR-RKALLLRWRSDI 145 (307) Q Consensus 70 ~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~---~l~~lp~~a~IGTsS~R-R~aql~~~~p~l 145 (307) .+|.+|++|+++-.+-.-| +..+.+..+. +--. ..-+++.+.+. ++++| .|.+||+..-- =..++....|+. T Consensus 57 ~~l~~g~~D~~~~~~~~~~-~r~~~~~fs~-py~~-~~~~~~~~~~~~~~~~~~l-~g~~i~~~~g~~~~~~~~~~~~~~ 132 (237) T 3kzg_A 57 PALKNREVDLVIASMIITD-ERKKHFIFSL-PYME-SNSQYITTVDSKISTFDDL-HGKKIGVRKGTPYARQVLSENRNN 132 (237) T ss_dssp HHHHTTSSSEECSSCBCCT-TGGGTCEECC-CSBC-CEEEEEEETTCSCCSGGGG-TTCEEEEETTSTHHHHHHHTCSSC T ss_pred HHHHCCCCCEEECCCCCCH-HHHHCCCCCC-CEEE-CCCEEEECCCCCCCCHHHH-CCCCCEEECCCHHHHHHHHHCCCC T ss_conf 9998699877721367997-8973020467-4340-3401233155556898897-698214325868999998734564 Q ss_pred CCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC----CCCCC-CCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHH Q ss_conf 3103307679999986378765563014545421----62112-223368667358543207899985276124556776 Q gi|254781037|r 146 SVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL----KKEKV-IKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKV 220 (307) Q Consensus 146 ~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL----~l~~~-i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~ 220 (307) ++.... +.+.-+..|..|.+|+.+.-...+..+ +.... +...+..........+ .+++-.++++..+ +.. T Consensus 133 ~i~~~~-~~~~~~~~l~~GrvD~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l---~~~ 207 (237) T 3kzg_A 133 QVIFYE-LIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGE-GYSIMANPDQFVL---IKK 207 (237) T ss_dssp EEEEES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTT-CBCCEECGGGHHH---HHH T ss_pred EEECCC-CHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCEECCCCEEECCCCCCCCC-CEEEEECCCCHHH---HHH T ss_conf 011258-88998889865965799965999999998589641021532011366555676-3699988999999---999 Q ss_pred HCCHHHHHHH--HHHHHHHHHHCCCCCC Q ss_conf 2397888887--8899999871776488 Q gi|254781037|r 221 INHEDTWDSV--NCERAFLAELDGSCKS 246 (307) Q Consensus 221 Ind~~T~~~v--~aER~fL~~L~GgC~~ 246 (307) ||..-....- ..++-+-+-+||..|. T Consensus 208 in~~l~~l~~~G~~~~i~~kyf~g~~~~ 235 (237) T 3kzg_A 208 INKILLEMEADGTYLRLYSEYFEGHHHH 235 (237) T ss_dssp HHHHHHHHHHSSHHHHHHHHHC------ T ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCCC T ss_conf 9999999997878999997468998778 No 35 >1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A Probab=73.80 E-value=4.5 Score=19.41 Aligned_cols=173 Identities=16% Similarity=0.123 Sum_probs=84.9 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403 Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307) Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307) +|+||+=.|--+.+=. .+...+.+.| |++++++..- .+.++.+.+.++++|+++=.. T Consensus 6 ~lrIg~~~~~~~~~lp-~~l~~f~~~~--P~v~i~i~~~--------------------~~~~l~~~l~~~~~d~~~~~~ 62 (219) T 1i6a_A 6 PLHIGLIPTVGPYLLP-HIIPMLHQTF--PKLEMYLHEA--------------------QTHQLLAQLDSGKLDAVILAL 62 (219) T ss_dssp EEEEEECTTTHHHHHH-HHHHHHHHHC--TTEEEEEEEC--------------------CHHHHHHHHHHTSCSEEEEEC T ss_pred EEEEEEEHHHHHHHHH-HHHHHHHHHC--CCCEEEEEEC--------------------CCHHHHHHHHCCCCHHHHCCC T ss_conf 9999837779999999-9999999988--8968999988--------------------848888887536401010235 Q ss_pred CCCCCCCCCCCEEE--------EECCCCCCCEEEEECCCCCCCCCCCCCEEECCCC--CHHH---HHHHHHCCCCCHHHC Q ss_conf 43211101221012--------2236568310566524324332456732204753--0288---899842377310330 Q gi|254781037|r 85 KDMPTKLLKGLQIS--------AYLPREDIRDVFISHTAQSLKDLALHSVIGTSSL--RRKA---LLLRWRSDISVIDFR 151 (307) Q Consensus 85 KDlP~~~~~~l~i~--------a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~--RR~a---ql~~~~p~l~~~~iR 151 (307) -.. ++++... .+..++.| |..++..++.++.....|..... .|.. .+.......++..-= T Consensus 63 ~~~----~~~~~~~~l~~~~~~~v~~~~hp---la~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (219) T 1i6a_A 63 VKE----SEAFIEVPLFDEPMLLAIYEDHP---WANREAVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRA 135 (219) T ss_dssp CGG----GTTSEEEEEEEEEEEEEEETTSG---GGGCSCEEGGGGTTSEEECCTTTTCSSCTTSSCSSCTTSEEECTTTT T ss_pred CCC----CCCCCCCCCCCCCEEEEEECCCH---HHCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE T ss_conf 532----34532343445536999925971---11699989899804768984587531567778999738998704774 Q ss_pred CCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCC Q ss_conf 7679999986378765563014545421621122233686673585432078999852761 Q gi|254781037|r 152 GKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNP 212 (307) Q Consensus 152 GNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~ 212 (307) .++++-+.-+.+|..=+++-..+ +....-.... ..++.....| +=-+++..|++.. T Consensus 136 ~~~~~~~~lv~~g~gi~~lp~~~-~~~~~~~~~l-~~l~~~~~~~---~~~~~lv~~~~~~ 191 (219) T 1i6a_A 136 TSLETLRNMVAAGSGITLLPALA-VPPERKRDGV-VYLPAIKPEP---RRTIGLVYRPGSP 191 (219) T ss_dssp SCHHHHHHHHHTTSCBEEEEGGG-SCSSSEETTE-EEECEESSCC---EEEEEEEECTTCT T ss_pred CCHHHHHHHHHHCCEEEEECHHH-HHHHHHCCCE-EEEECCCCCC---EEEEEEEEECCCC T ss_conf 89999999998099899903899-9755107988-9998889985---3599999979196 No 36 >3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Probab=72.40 E-value=4.9 Score=19.19 Aligned_cols=205 Identities=13% Similarity=0.094 Sum_probs=106.1 Q ss_pred CCCEEEEE--CCCHHHHH-HHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEE Q ss_conf 88289970--79888899-9999999999740899833899999732741158755674862269999999987098369 Q gi|254781037|r 3 KKPFRIGT--RCSPLALA-HAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDC 79 (307) Q Consensus 3 ~~~i~Igt--R~S~LAl~-Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDi 79 (307) .++|++|- -.|+-.+. +-.-..+.|.+.- +++++++... | -.++-++|..|++|+ T Consensus 3 ~~~l~fg~~p~~~~~~~~~~~~pl~~~L~~~l---G~~V~~~~~~---d----------------y~~~ieal~~g~vDi 60 (310) T 3n5l_A 3 QPVINFGIISTESSQNLKSIWEPFLKDMSQQT---GYQVKAFFAP---D----------------YAGIIQGMRFDKVDI 60 (310) T ss_dssp CCEEEEEECCSSCHHHHHHHHHHHHHHHHHHH---SSEEEEECCS---S----------------HHHHHHHHHTTSCSE T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH---CCCEEEEECC---C----------------HHHHHHHHHCCCCCE T ss_conf 98699997789999999999999999999976---9957999759---9----------------999999997699868 Q ss_pred EEECCCCCC-CCCCCCCEEE-EECCC-CCC--CEEEEECCC---CCCCCC---CCCCEEECCCCCHH-------HHHHHH Q ss_conf 974034321-1101221012-22365-683--105665243---243324---56732204753028-------889984 Q gi|254781037|r 80 AVHSAKDMP-TKLLKGLQIS-AYLPR-EDI--RDVFISHTA---QSLKDL---ALHSVIGTSSLRRK-------ALLLRW 141 (307) Q Consensus 80 AVHSlKDlP-~~~~~~l~i~-a~~~R-~d~--rD~lv~~~~---~~l~~l---p~~a~IGTsS~RR~-------aql~~~ 141 (307) |..+-.-.. .....+.... ....+ ..| +-+||.+.. ++++|| ..|.+++.+++.-. ..++.. T Consensus 61 a~~~~~~~~~a~~~~~~~~~~~~~~~~g~~~y~s~liv~~ds~i~sl~DL~gk~kg~~~a~~d~~Stsg~l~p~~~l~~~ 140 (310) T 3n5l_A 61 AWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAK 140 (310) T ss_dssp EECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTT T ss_pred EEECCHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHH T ss_conf 99892899999860598056652034788761089999688776657777410000000247876327889999999986 Q ss_pred -----HCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCC----CCCCCHHHCCCCCCCCEEEEEEECC-C Q ss_conf -----23773103307679999986378765563014545421621122----2336866735854320789998527-6 Q gi|254781037|r 142 -----RSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVI----KEILNIEDFPPSPGQGAICIETHVN-N 211 (307) Q Consensus 142 -----~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i----~~~l~~~~~~PA~gQGaIaIe~r~~-d 211 (307) ..+++.+ +-|+-+.-+.-+.+|++|+..+....+.++--.... ..++-.. .|-|..+ +.+|++ + T Consensus 141 ~gi~~~~~f~~v-~~~sh~~~~~aV~~G~vDaa~~~~~~~~~~~~~~~~~~~~lrvI~~S--~~iP~~~---i~~~~~l~ 214 (310) T 3n5l_A 141 NNVDPVKAFKRT-LNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKS--PLIPGDP---LVWRNNLS 214 (310) T ss_dssp TTCCHHHHSSEE-EECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEE--EEEECCE---EEEETTSC T ss_pred CCCCCCCCCEEE-ECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCHHHHHCCEEEEEC--CCCCCCE---EEEECCCC T ss_conf 499840042347-60783889999986998789851799999998470445162699867--9988873---89929899 Q ss_pred CHHHH----HHHHHCCHHHHHHHHHHHHHHHHHC Q ss_conf 12455----6776239788888788999998717 Q gi|254781037|r 212 PKAQE----LVKVINHEDTWDSVNCERAFLAELD 241 (307) Q Consensus 212 ~~i~~----il~~Ind~~T~~~v~aER~fL~~L~ 241 (307) ++.++ .+-.++.. ..++.+|..++ T Consensus 215 ~e~~~~i~~all~~~~~------~e~~~iL~~~~ 242 (310) T 3n5l_A 215 DEQKNKLRDFFFKYGAN------AEQKKVLADLQ 242 (310) T ss_dssp HHHHHHHHHHHHHCCCS------HHHHHHHHHTT T ss_pred HHHHHHHHHHHHHCCCC------HHHHHHHHHCC T ss_conf 99999999999846899------77899998578 No 37 >2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1 Probab=71.83 E-value=5 Score=19.11 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=39.5 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE--EEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHH Q ss_conf 99999987098369974034321110122101--222365683105665243243324567322047530288 Q gi|254781037|r 66 EEIEKKLISGEIDCAVHSAKDMPTKLLKGLQI--SAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKA 136 (307) Q Consensus 66 kele~aLl~g~iDiAVHSlKDlP~~~~~~l~i--~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~a 136 (307) .++-++|++|++|++..|.=-....-.++..+ .++..-....-+++.. .+++++| +|-+||+++.-... T Consensus 43 ~~l~~al~sG~iDi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~dL-kGkkVav~~~ss~~ 113 (291) T 2nxo_A 43 EKLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVGCDGPVMSCVIVS-QVPLDRL-DGARVALGSTSRTS 113 (291) T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHTGGGEEEEEEEEEEESSCCSSEEEEE-SSCTTSC-SSSEEEEETTCSHH T ss_pred HHHHHHHHCCCCCEEECCHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEC-CCCHHHH-CCCEEEEECCCCHH T ss_conf 99999998699889964299998614754475665450468855789736-7897896-89859980898599 No 38 >1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Probab=71.82 E-value=5 Score=19.11 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=68.1 Q ss_pred CCEEEEEEEE--EECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEE Q ss_conf 8338999997--32741158755674862269999999987098369974034321110122101222365683105665 Q gi|254781037|r 35 PHNIVIIPLS--TKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFIS 112 (307) Q Consensus 35 ~~~~ei~~i~--T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~ 112 (307) ++++|++.+. +-|+......... +-| .++-.+|..|++|+++.++-.-|... +.+.. ..+-... .-+++. T Consensus 79 g~~~e~~~~~~~~~g~~~~~~~~~~----~~w-~~~~~~l~~g~~Di~~~~~~~t~eR~-~~~~F-s~Py~~~-~~~~~v 150 (292) T 1pb7_A 79 NFTYEVHLVADGKFGTQERVNNSNK----KEW-NGMMGELLSGQADMIVAPLTINNERA-QYIEF-SKPFKYQ-GLTILV 150 (292) T ss_dssp TCCEEEEECTTCCCCCEEECTTSSC----EEE-CHHHHHHHHTSCSEECSSCBCCHHHH-TTEEE-CSCSEEE-EEEEEE T ss_pred CCCEEEEECCCCCCCCCCCCCCCCC----CCH-HHHHHHHHCCCEEEEEECCCCCHHHH-HHCCC-CCEECCC-CEEEEE T ss_conf 9947999866765454333465566----888-89999986797679986687998999-42666-5101247-768999 Q ss_pred CCCCCC--------CCCCCCCEEEC---CCC----CHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHH Q ss_conf 243243--------32456732204---753----028889984237731033076799999863787655630145454 Q gi|254781037|r 113 HTAQSL--------KDLALHSVIGT---SSL----RRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIK 177 (307) Q Consensus 113 ~~~~~l--------~~lp~~a~IGT---sS~----RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~ 177 (307) ++...+ ..+..+-++|+ ++. ++...+....|+.++..+ .+.+..+..+.+|++|+++....-+. T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~g~~da~~~~~~~~~ 229 (292) T 1pb7_A 151 KKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNY-ESAAEAIQAVRDNKLHAFIWDSAVLE 229 (292) T ss_dssp ETTCCCCSTTCHHHHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCB-SSHHHHHHHHHTTSCSEEEEEHHHHH T ss_pred ECCCCCCCCCHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEE-CCHHHHHHHHHCCCEEEEECCHHHHH T ss_conf 86886564530330686332699786647999999864666530677469982-88999999987797359962589999 Q ss_pred HC Q ss_conf 21 Q gi|254781037|r 178 RL 179 (307) Q Consensus 178 RL 179 (307) .+ T Consensus 230 ~~ 231 (292) T 1pb7_A 230 FE 231 (292) T ss_dssp HH T ss_pred HH T ss_conf 99 No 39 >2q88_A EHUB, putative ABC transporter amino acid-binding protein; substrate-binding protein, compatible solues, osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Probab=69.99 E-value=5.5 Score=18.85 Aligned_cols=108 Identities=18% Similarity=0.102 Sum_probs=58.1 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCC--------CCCCCCCCCEEECCCCC--HHH Q ss_conf 99999870983699740343211101221012223656831056652432--------43324567322047530--288 Q gi|254781037|r 67 EIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQ--------SLKDLALHSVIGTSSLR--RKA 136 (307) Q Consensus 67 ele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~--------~l~~lp~~a~IGTsS~R--R~a 136 (307) ++..+|.+|++|+++-++---|. ....+... .+.-..+. +++.+.+. ++.++. +.+||+..-= -.. T Consensus 63 ~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~fs-~p~~~~~~-~~~~~~~~~~~~~~~~~~~~l~-~~~i~~~~g~~~~~~ 138 (257) T 2q88_A 63 AMIPGLQAGRHDAITAGLFMKPE-RCAAVAYS-QPILCDAE-AFALKKGNPLGLKSYKDIADNP-DAKIGAPGGGTEEKL 138 (257) T ss_dssp GHHHHHHTTSCSEECSCCBCCHH-HHTTSEEC-SCCCEECE-EEEEETTCTTCCCBHHHHHHCT-TCCEEECTTSHHHHH T ss_pred HHHHHHHCCCCCEEEEEEECCHH-HCCHHHCC-CCEECCCC-EEEEECCCCCCCCCHHHHHHCC-CCEEEEECCCHHHHH T ss_conf 99999975998847764341543-24310058-66112673-1467536411333133454147-856998358569999 Q ss_pred HHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC Q ss_conf 8998423773103307679999986378765563014545421 Q gi|254781037|r 137 LLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307) Q Consensus 137 ql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307) ......|..+++.+ .+.+.-++.|.+|++|++|.....+..+ T Consensus 139 ~~~~~~~~~~i~~~-~~~~~~~~~l~~GrvD~~v~~~~~~~~~ 180 (257) T 2q88_A 139 ALEAGVPRDRVIVV-PDGQSGLKMLQDGRIDVYSLPVLSINDL 180 (257) T ss_dssp HHHTTCCGGGEEEC-SSHHHHHHHHHHTSCSEEEEEHHHHHHH T ss_pred HHHCCCCCCCEEEE-HHHHHHHHHHHCCCEEEEEECHHHHHHH T ss_conf 99818986622320-0167888998769647999659999999 No 40 >3k4u_A Binding component of ABC transporter; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: LYS; 2.62A {Wolinella succinogenes} Probab=61.60 E-value=7.9 Score=17.82 Aligned_cols=190 Identities=11% Similarity=0.107 Sum_probs=92.4 Q ss_pred CCCEEEEECCC--HHHHH--H------HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHH Q ss_conf 88289970798--88899--9------99999999974089983389999973274115875567486226999999998 Q gi|254781037|r 3 KKPFRIGTRCS--PLALA--H------AFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKL 72 (307) Q Consensus 3 ~~~i~IgtR~S--~LAl~--Q------a~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aL 72 (307) +-+||||+..+ |+... + .-.+.+++.+.- +++++++.+... +.-..+ T Consensus 4 rg~lrvgv~~~~pP~~~~d~~g~~~G~~~Dl~~~i~~~l---g~~~~~~~~~~~--------------------~~~~~~ 60 (245) T 3k4u_A 4 RGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAM---GVKLKLVPTSWD--------------------GLIPGL 60 (245) T ss_dssp CSEEEEEECTTSTTTCEEETTTEEESHHHHHHHHHHHHH---TCEEEEEECCGG--------------------GHHHHH T ss_pred CCEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHHH---CCCEEEEECCHH--------------------HHHHHH T ss_conf 878999982898893689999988872999999999994---996699733708--------------------889998 Q ss_pred HCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCC----CCCCC-CCCCEEE-CCCCCHHHHHHHHHCCCC Q ss_conf 70983699740343211101221012223656831056652432----43324-5673220-475302888998423773 Q gi|254781037|r 73 ISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQ----SLKDL-ALHSVIG-TSSLRRKALLLRWRSDIS 146 (307) Q Consensus 73 l~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~----~l~~l-p~~a~IG-TsS~RR~aql~~~~p~l~ 146 (307) ..+++|+++.++-.-|... +.+.. ..+...+..-+++.+... +..++ ..+..++ +.+.--...++...|..+ T Consensus 61 ~~~~~d~~~~~~~~~~~r~-~~~~~-s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (245) T 3k4u_A 61 VTEKFDIIISGMTISQERN-LRVNF-VEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAK 138 (245) T ss_dssp HTTSCSEECSSCBCCHHHH-TTSEE-CSCSEEECEEEEEETTTTTTCCSGGGGCCSSCEEEEETTSHHHHHHHHHCSSSE T ss_pred HCCCCCEEEECCCCCHHHH-HHCCC-CCCEECCCCCCHHCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCE T ss_conf 6699778986785687777-53346-786120441100014654446787785145542134777237899997377862 Q ss_pred CHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCH Q ss_conf 103307679999986378765563014545421621122233686673585432078999852761245567762397 Q gi|254781037|r 147 VIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHE 224 (307) Q Consensus 147 ~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~ 224 (307) +.... +...-+..|.+|.+|++|.-..-+..+-.........- ..++....-+++-.+++|+++.+ .||.. T Consensus 139 i~~~~-~~~~~l~~L~~GrvD~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~k~~~~l~~---~in~~ 209 (245) T 3k4u_A 139 LKTYD-TEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVH---LDTSLTYEPLGWAIKKGDPDFLN---WLNHF 209 (245) T ss_dssp EEEES-SHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEE---ECCCCSCEEECCEECTTCHHHHH---HHHHH T ss_pred EEEEE-CCHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCE---EECCCCCCEEEEEEECCCHHHHH---HHHHH T ss_conf 89984-21789999977996599973277779998648766421---22147776189999699999999---99999 No 41 >1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A* Probab=59.64 E-value=8.6 Score=17.60 Aligned_cols=58 Identities=7% Similarity=-0.074 Sum_probs=43.5 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740 Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307) Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307) ++|+||+-.-.=..++++.+...|++. |++++.++ . + + +..+..+|.+|+||+-+-. T Consensus 8 ~tv~~~~~~wte~~i~~ei~~~~Le~~----Gy~V~~~~---~-----------~-~----~~~~~~al~~G~iDi~~E~ 64 (309) T 1r9l_A 8 ITVNPVQSTITEETFQTLLVSRALEKL----GYTVNKPS---E-----------V-D----YNVGYTSLASGDATFTAVN 64 (309) T ss_dssp CEECEEECSCGGGHHHHHHHHHHHHHT----TCEECCCE---E-----------C-C----HHHHHHHHHHTSSCEEEEE T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHC----CCCEEEEC---C-----------C-C----HHHHHHHHHCCCCEEEEEE T ss_conf 889884178528999999999999986----99647514---7-----------8-7----3999999986997599844 Q ss_pred C Q ss_conf 3 Q gi|254781037|r 84 A 84 (307) Q Consensus 84 l 84 (307) + T Consensus 65 w 65 (309) T 1r9l_A 65 W 65 (309) T ss_dssp E T ss_pred E T ss_conf 3 No 42 >2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding domain, cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1 Probab=59.29 E-value=8.7 Score=17.56 Aligned_cols=185 Identities=13% Similarity=0.069 Sum_probs=94.7 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403 Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307) Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307) .||||+-.| +|..---.+...+.+.| |++++++..-. +.++.+.|.+|++|+|+=.. T Consensus 15 ~lrIg~~~~-~a~~~Lp~~l~~f~~~~--P~i~l~i~~~~--------------------~~~l~~~L~~g~~D~ai~~~ 71 (228) T 2fyi_A 15 VLTIATTHT-QARYSLPEVIKAFRELF--PEVRLELIQGT--------------------PQEIATLLQNGEADIGIASE 71 (228) T ss_dssp EEEEEECHH-HHHHTHHHHHHHHHHHC--TTEEEEEEECC--------------------HHHHHHHHHHTSCSEEEESS T ss_pred EEEEEEEHH-HHHHHHHHHHHHHHHHC--CCCEEEEEECC--------------------CHHHHHHHHCCCCCEEEEEC T ss_conf 799997588-99999999999999988--99489999676--------------------59999998668833233311 Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEECCC-------CCCCCCCCCCEEE--CCC-CCHHH--HHHHHHCCCCCHHHCC Q ss_conf 4321110122101222365683105665243-------2433245673220--475-30288--8998423773103307 Q gi|254781037|r 85 KDMPTKLLKGLQISAYLPREDIRDVFISHTA-------QSLKDLALHSVIG--TSS-LRRKA--LLLRWRSDISVIDFRG 152 (307) Q Consensus 85 KDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~-------~~l~~lp~~a~IG--TsS-~RR~a--ql~~~~p~l~~~~iRG 152 (307) |....+++..- +-..++--++++++. .++.+|..--.|. .++ .|... .+.......++.-.=. T Consensus 72 ---~~~~~~~~~~~--~l~~~~~~~v~~~~~~~~~~~~i~~~dL~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (228) T 2fyi_A 72 ---RLSNDPQLVAF--PWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQ 146 (228) T ss_dssp ---SSTTCTTEEEE--EEEEECEEEEEETTCGGGTSSSCCHHHHTTSCEEEECTTSTTHHHHHHHHHHTTCCCCEEEEES T ss_pred ---CCCCCCCCEEE--EEEECCCCEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEC T ss_conf ---23568653367--7320343011356420003444447887259721268998178889987650387775347847 Q ss_pred CHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC---CHHHHHHHHHCC Q ss_conf 67999998637876556301454542162112223368667358543207899985276---124556776239 Q gi|254781037|r 153 KIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN---PKAQELVKVINH 223 (307) Q Consensus 153 Nv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d---~~i~~il~~Ind 223 (307) +.++-+.-+.+|..=++ ++........ .... ..++.+.. .-+..+++-.+++. ..+..+++-++. T Consensus 147 ~~~~~~~~v~~g~gi~~-lp~~~~~~~~-~~~l-v~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~Fi~~~~~ 214 (228) T 2fyi_A 147 DSDVIKTYVALGLGIGL-VAEQSSGEQE-EENL-IRLDTRHL---FDANTVWLGLKRGQLQRNYVWRFLELCNA 214 (228) T ss_dssp SHHHHHHHHHHTSCEEE-EEGGGGSTTC-CTTE-EEECCTTT---SCCEEEEEEEETTCCBCHHHHHHHHHHCS T ss_pred CHHHHHHHHHCCCEEEE-CCHHHHHHHH-CCCE-EEEECCCC---CCCEEEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 89999999865999998-6399985654-5998-99968777---76408999998968679999999999986 No 43 >2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 2.00A {Homo sapiens} Probab=56.04 E-value=4.7 Score=19.26 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=21.4 Q ss_pred CCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHH Q ss_conf 6732204753028889984237731033076799 Q gi|254781037|r 123 LHSVIGTSSLRRKALLLRWRSDISVIDFRGKIET 156 (307) Q Consensus 123 ~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~T 156 (307) +.-++|++|+||+..|..+.-++.+. -=|||- T Consensus 4 krlILASsSprR~~lL~~~gi~f~v~--~~~iDE 35 (230) T 2p5x_A 4 KRVVLASASPRRQEILSNAGLRFEVV--PSKFKE 35 (230) T ss_dssp SCEEECCCCHHHHHHHHHTTCCCEEC--CCCCCC T ss_pred CCEEEECCCHHHHHHHHHCCCCEEEE--CCCCCC T ss_conf 98999548999999998389981995--699899 No 44 >3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} Probab=53.36 E-value=11 Score=16.94 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=44.0 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 98828997079888899999999999974089983389999973274115875567486226999999998709836997 Q gi|254781037|r 2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307) Q Consensus 2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307) ++++|+||+-+-.=+.+.|+.....|++.. +..+++......| + +.-+-++|.+|+||+.. T Consensus 7 ~~~~I~Ig~~~w~e~~~~a~i~~~iLe~~g---~~~v~~~~~~~~g------------~----~~~~~~al~~GdiDv~~ 67 (282) T 3o66_A 7 TKNDVKITALSTSESQIISHMLRLLIEHDT---HGKIKPTLVNNLG------------S----STIQHNALINGDANISG 67 (282) T ss_dssp CCCCCEEEEESSHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEES------------S----HHHHHHHHHHTSCSEEE T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHCC---CCCEEEEECCCCC------------C----HHHHHHHHHCCCCCEEE T ss_conf 899889971776099999999999998545---9834888657776------------2----89999999869971840 No 45 >1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A* Probab=52.50 E-value=4.8 Score=19.21 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=19.1 Q ss_pred HHHHHHHCCCCCCCEEEEEEEECCEEE Q ss_conf 999987177648852899999999899 Q gi|254781037|r 234 RAFLAELDGSCKSAIAGFAYCKGSTLY 260 (307) Q Consensus 234 R~fL~~L~GgC~~PIGa~A~i~~~~l~ 260 (307) +.+|+.|.|.=|.=+.+.+-+.+++.. T Consensus 90 ~~~L~~lsg~~h~v~t~v~l~~~~~~~ 116 (189) T 1ex2_A 90 ASMLRRLSGRSHSVITAVSIQAENHSE 116 (189) T ss_dssp HHHHHHHTTSEEEEEEEEEEEETTEEE T ss_pred HHHHHHHCCCCCEEEEEEEEEECCCCC T ss_conf 999999569972688899998658531 No 46 >3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis} Probab=51.95 E-value=11 Score=16.80 Aligned_cols=171 Identities=16% Similarity=0.198 Sum_probs=82.4 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403 Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307) Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307) +||||+=.|--.-.= -.+...+.+. +|++++++..- .+.++.+.|.+|++|+|+-.. T Consensus 5 ~lrIG~~~s~~~~~l-p~~l~~f~~~--~P~v~l~i~~~--------------------~~~~l~~~l~~g~~D~~i~~~ 61 (219) T 3jv9_A 5 AFKLGLIFTVAPYLL-PKLIVSLRRT--APKMPLMLEEN--------------------YTHTLTESLKRGDVDAIIVAE 61 (219) T ss_dssp CEEEEEETTTHHHHH-HHHHHHHHHH--STTCCEEEEEE--------------------CHHHHHHHHHHTSSSEEEEES T ss_pred EEEEEEEHHHHHHHH-HHHHHHHHHH--CCCCEEEEEEC--------------------CCHHHHHHHHCCCEEEEEECC T ss_conf 899997778899999-9999999998--88928999988--------------------737777656169588875026 Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEEC-------CCCCCCCCCCCCEEECC--CCCHHHHHHHHHCCCC--------- Q ss_conf 43211101221012223656831056652-------43243324567322047--5302888998423773--------- Q gi|254781037|r 85 KDMPTKLLKGLQISAYLPREDIRDVFISH-------TAQSLKDLALHSVIGTS--SLRRKALLLRWRSDIS--------- 146 (307) Q Consensus 85 KDlP~~~~~~l~i~a~~~R~d~rD~lv~~-------~~~~l~~lp~~a~IGTs--S~RR~aql~~~~p~l~--------- 146 (307) |. ..+++..-.+ -.++--+++.+ ...+++++.....+..+ +..|.. +...+.... T Consensus 62 ---~~-~~~~~~~~~l--~~e~~~lv~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 134 (219) T 3jv9_A 62 ---PF-QEPGIVTEPL--YDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQ-VLSSCSELAAKQRIQGLT 134 (219) T ss_dssp ---SC-CCTTEEEEEE--EEEEEEEEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHH-HHHHCSTTHHHHHHHTTT T ss_pred ---CC-CCCCEEEEEE--CCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHH-HHHHHHHCCCCCCCCCCC T ss_conf ---87-7787489850--3310899975664212245421133322774446888526789-999999758985313455 Q ss_pred CHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC Q ss_conf 10330767999998637876556301454542162112223368667358543207899985276 Q gi|254781037|r 147 VIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN 211 (307) Q Consensus 147 ~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307) ..---.+++|-++-..+|..=++ +....+.... ......++.+...| .--+++.+|++. T Consensus 135 ~~~~~~~~~~~~~lv~~G~Gi~~-lP~~~~~~~~--~~~l~~~pl~~~~~---~~~i~lv~~k~~ 193 (219) T 3jv9_A 135 NTLQGSSINTIRHMVASGLAISV-LPATALTEND--HMLFSIIPFEGTPP---SRRVVLAYRRNF 193 (219) T ss_dssp SSCEESSHHHHHHHHHHTSCEEE-EEGGGCCTTC--TTTEEEECCSSSCC---EEEEEEEEETTC T ss_pred CCEEECCHHHHHHHHHCCCEEEE-CCHHHHHHCC--CCCEEEEECCCCCC---EEEEEEEEECCC T ss_conf 62677879999999985998998-7188971142--79989998889985---459999998949 No 47 >2j01_S 50S ribosomal protein L18; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Probab=51.37 E-value=12 Score=16.74 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=27.8 Q ss_pred EEEEEECCCCCEEEEEEE-------ECCHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 999998699878999998-------43988899999999999997060563 Q gi|254781037|r 261 FYGIVLASDGKIFHEVSR-------NGNRCDAINIGRDAAQYIRFISNKNV 304 (307) Q Consensus 261 l~a~v~s~DG~~~i~~~~-------~g~~~~a~~LG~~la~~Ll~~g~k~i 304 (307) +.+++.++++...+...- .++.+.+..+|..+|+..++.|-+++ T Consensus 35 iyaQiIdd~~~~tl~s~St~~k~~k~~n~~aA~~vG~~ia~ka~~~gI~~v 85 (112) T 2j01_S 35 IYAQIIDDEKGVTLVSASSLALKLKGNKTEVARQVGRALAEKALALGIKQV 85 (112) T ss_dssp BCEEEEETTTTEEEEEECSTTTCCCSCHHHHHHHHHHHHHHHHHHTSCCCC T ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 699999779986852110410013588599999999999999998699889 No 48 >2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2 Probab=50.94 E-value=4.1 Score=19.68 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=24.1 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHH--CCCCCHHHCCCHHH Q ss_conf 3324567322047530288899842--37731033076799 Q gi|254781037|r 118 LKDLALHSVIGTSSLRRKALLLRWR--SDISVIDFRGKIET 156 (307) Q Consensus 118 l~~lp~~a~IGTsS~RR~aql~~~~--p~l~~~~iRGNv~T 156 (307) +.+..+.-++|++|+||+..|+... +.+.|.-+-=+||- T Consensus 5 ~~~~~~~iILASsSp~R~~lL~~~gg~~~~~f~v~~~~iDE 45 (207) T 2amh_A 5 MAEEIRTMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDE 45 (207) T ss_dssp --CCCCEEEECCCCHHHHHHHHHHHTTTCSEEEECCCCCCG T ss_pred CHHCCCCEEEECCCHHHHHHHHHCCCCCCCCEEEECCCCCC T ss_conf 02216859993599999999996586678876996899987 No 49 >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A Probab=42.59 E-value=2.4 Score=21.22 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=72.3 Q ss_pred CCCEEECCCCCHHHHHHHH--HCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCC Q ss_conf 6732204753028889984--23773103307679999986378765563014545421621122233686673585432 Q gi|254781037|r 123 LHSVIGTSSLRRKALLLRW--RSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQ 200 (307) Q Consensus 123 ~~a~IGTsS~RR~aql~~~--~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQ 200 (307) .++..||+-.+-+-+.-.. .-.+.+.-..|.-+.-|.++-+|+--|+.+.... +++.- +- +.+ .-+.-+ T Consensus 205 ~~s~~GtGGM~tKl~AA~~a~~~Gi~~iIa~G~~~~~l~~i~~g~~~GT~F~p~~-~~~~~--Rk-~Wi-----~~~~~~ 275 (367) T 2j5v_A 205 SVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA-TPLEN--RK-RWI-----FGAPPA 275 (367) T ss_dssp ---------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCCS-SCCCG--GG-GGG-----GTCCCS T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCEECCCC-CCHHH--HH-HHH-----HHCCCC T ss_conf 8888886851779999999987898299921899750689866997442467777-84336--89-998-----513688 Q ss_pred CEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE----ECCEEEEEEEEECCCCCEEEEE Q ss_conf 078999852761245567762397888887889999987177648852899999----9998999999986998789999 Q gi|254781037|r 201 GAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYC----KGSTLYFYGIVLASDGKIFHEV 276 (307) Q Consensus 201 GaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i----~~~~l~l~a~v~s~DG~~~i~~ 276 (307) |.|-| |+-. .+++++ .|.--.|+|+.... .|+-+. +.++||.++-+. T Consensus 276 G~i~v----d~gA-------------------~~al~~--~g~SLLp~GI~~V~G~F~~GDvV~----I~~~~g~~IarG 326 (367) T 2j5v_A 276 GEITV----DEGA-------------------TAAILE--RGSSLLPKGIKSVTGNFSRGEVIR----ICNLEGRDIAHG 326 (367) T ss_dssp CEEEE----CHHH-------------------HHHHHH--HCCCBCGGGEEEEESCCCTTCEEE----EEETTCCEEEEE T ss_pred CCEEE----EHHH-------------------HHHHHH--CCCCCCCCCCEEEECEECCCCEEE----EECCCCCEEEEE T ss_conf 73898----7489-------------------999874--388616336289978666999799----999999899899 Q ss_pred EEECCHHHHHHH Q ss_conf 984398889999 Q gi|254781037|r 277 SRNGNRCDAINI 288 (307) Q Consensus 277 ~~~g~~~~a~~L 288 (307) -...+.++.+.+ T Consensus 327 l~nysS~el~~I 338 (367) T 2j5v_A 327 VSRYNSDALRRI 338 (367) T ss_dssp ECSSCHHHHHHH T ss_pred ECCCCHHHHHHH T ss_conf 655899999988 No 50 >2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, thermophilic bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Probab=39.89 E-value=17 Score=15.60 Aligned_cols=150 Identities=14% Similarity=0.128 Sum_probs=80.6 Q ss_pred CCCCEEEEECCC--HHHHHH-------HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHH Q ss_conf 988289970798--888999-------99999999974089983389999973274115875567486226999999998 Q gi|254781037|r 2 EKKPFRIGTRCS--PLALAH-------AFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKL 72 (307) Q Consensus 2 ~~~~i~IgtR~S--~LAl~Q-------a~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aL 72 (307) +.++|+||+-.+ |..-.. .-.+.+++.+.- +++++++.+. -+++-.+| T Consensus 40 ~~~~l~Vg~~~~~~P~~~~~~G~~~G~~vDl~~~ia~~l---g~~~~~~~~~--------------------~~~~~~~l 96 (272) T 2pvu_A 40 TKKKVVVGTDAAFAPFEYMQKGKIVGFDVDLLDAVMKAA---GLDYELKNIG--------------------WDPLFASL 96 (272) T ss_dssp CCCCEEEEECCCBTTTBEEETTEEESHHHHHHHHHHHHH---TCCEEEEECC--------------------HHHHHHHH T ss_pred CCCEEEEEECCCCCCCEEEECCEEEEHHHHHHHHHHHHH---CCCEEEEECC--------------------HHHHHHHH T ss_conf 589899998998789358569977881999999999980---9965999779--------------------89999999 Q ss_pred HCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCC---CCCCCCCCCEEECCCCCHH-HHHHHHHCC-CCC Q ss_conf 70983699740343211101221012223656831056652432---4332456732204753028-889984237-731 Q gi|254781037|r 73 ISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQ---SLKDLALHSVIGTSSLRRK-ALLLRWRSD-ISV 147 (307) Q Consensus 73 l~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~---~l~~lp~~a~IGTsS~RR~-aql~~~~p~-l~~ 147 (307) .+|++|+++.++-.-|... ..+.... +--.+ .-+++.+++. +..+| .+..||+..--.. ..+..+++. .++ T Consensus 97 ~~g~~d~~~~~~~~t~~R~-~~~~~s~-p~~~~-~~~~~~~~~~~~~~~~~l-~~~~v~~~~g~~~~~~~~~~~~~~~~i 172 (272) T 2pvu_A 97 QSKEVDMGISGITITDERK-QSYDFSD-PYFEA-TQVILVKQGSPVKNALDL-KGKTIGVQNATTGQEAAEKLFGKGPHI 172 (272) T ss_dssp HHTSSSEECSSCBCCHHHH-TTEEECS-CCEEE-CEEEEEETTCCCCSGGGG-TTSCEEEETTSHHHHHHHHHHCSSTTE T ss_pred HCCCCCEEEECCCCCHHHH-CCCCCCC-CCCCC-CEEEEEECCCCCCCHHHH-CCCEEEEECCCCHHHHHHHHHCCCCEE T ss_conf 7599668951455787774-1055674-63056-378997448767885886-798577625763999999873448734 Q ss_pred HHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC Q ss_conf 03307679999986378765563014545421 Q gi|254781037|r 148 IDFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307) Q Consensus 148 ~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307) . -..+.+.-+..|.+|++|+++.-..-+..+ T Consensus 173 ~-~~~~~~~~~~~l~~GrvD~~v~~~~~~~~~ 203 (272) T 2pvu_A 173 K-KFETTVVAIMELLNGGVDAVITDNAVANEY 203 (272) T ss_dssp E-EESSHHHHHHHHHTTSCSEEEEEHHHHHHH T ss_pred E-ECCCHHHHHHHHHCCCCCEECCCHHHHHHH T ss_conf 3-042089999999859811652665989999 No 51 >3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Vitis vinifera} Probab=31.58 E-value=24 Score=14.76 Aligned_cols=45 Identities=16% Similarity=0.015 Sum_probs=30.6 Q ss_pred EEEEEEECCCCC-EEEEEE-------------EECCHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 999999869987-899999-------------843988899999999999997060563 Q gi|254781037|r 260 YFYGIVLASDGK-IFHEVS-------------RNGNRCDAINIGRDAAQYIRFISNKNV 304 (307) Q Consensus 260 ~l~a~v~s~DG~-~~i~~~-------------~~g~~~~a~~LG~~la~~Ll~~g~k~i 304 (307) ++.+++.+++.. .....+ ..++.+-+..+|+.+|+..+++|-.++ T Consensus 76 hIYAQiIDD~~~~tL~saSTl~K~lk~~~~~~~~~nieaA~~vG~~iA~kak~kgI~~V 134 (161) T 3bbo_Q 76 HLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKV 134 (161) T ss_dssp CEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCC T ss_pred EEEEEEEECCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 68999997479928999854311355540347613899999999999999998799889 No 52 >2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP} Probab=30.72 E-value=24 Score=14.66 Aligned_cols=174 Identities=15% Similarity=0.121 Sum_probs=85.1 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403 Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307) Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307) .|+||+=.|--..+-. .+...+.+.| |++++++..- -..++.++|.+|++|+|+-.. T Consensus 6 ~lrIg~~~~~~~~~l~-~~l~~f~~~~--P~v~l~i~~~--------------------~~~~l~~~l~~g~~Dl~i~~~ 62 (209) T 2ql3_A 6 PIAVGCYPALGPTILP-SMLYAFTAEY--PRASVEFRED--------------------TQNRLRTQLEGGELDVAIVYD 62 (209) T ss_dssp EEEEEECGGGTTTTHH-HHHHHHHHHC--TTEEEEEEEC--------------------CHHHHHHHHHTTSCSEEEEES T ss_pred EEEEEEEHHHHHHHHH-HHHHHHHHHC--CCCEEEEEEC--------------------CHHHHHHHHHCCCCEEEEEEC T ss_conf 9999968899999999-9999999988--7938999989--------------------828999876079835885304 Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEECCC--------CCCCCCCCCCEEEC--CCCCHH-HHHHHHHCCC--CCHHHC Q ss_conf 4321110122101222365683105665243--------24332456732204--753028-8899842377--310330 Q gi|254781037|r 85 KDMPTKLLKGLQISAYLPREDIRDVFISHTA--------QSLKDLALHSVIGT--SSLRRK-ALLLRWRSDI--SVIDFR 151 (307) Q Consensus 85 KDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~--------~~l~~lp~~a~IGT--sS~RR~-aql~~~~p~l--~~~~iR 151 (307) -.. ++++ ..+....++..+++.++. .++++|.....|.. ++.+|. .+... .-++ ++.--- T Consensus 63 ~~~----~~~~--~~~~~~~~~~~~v~~~~~~la~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 135 (209) T 2ql3_A 63 LDL----SPEW--QTVPLMTREPMVVLGAEHPLAGVDGPVRLADLAEHPMVLLDAPPSTNHAMDVCR-EAGFAPRVAYRT 135 (209) T ss_dssp SSC----CTTE--EEEEEEEECCEEEEETTCGGGGCCSCBCGGGGTTSCEEEECCTTHHHHHHHHHH-HHTCCCCEEEEE T ss_pred CCC----CCCH--HEECCCCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCEEECCCCCHHHHHHHHHH-HCCCCCEEEEEE T ss_conf 654----2000--000012112222246898345179966799883398563289951889999999-749995069982 Q ss_pred CCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC Q ss_conf 767999998637876556301454542162112223368667358543207899985276 Q gi|254781037|r 152 GKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN 211 (307) Q Consensus 152 GNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307) .|.++=++-+.+|..-+++-......-..-...+. ..+. .-|.+.+-.+.+-.|++. T Consensus 136 ~~~~~~~~lv~~g~Gi~~lp~~~~~~~~~~~~~~~-~~pl--~~~~~~~~~i~l~~~~~~ 192 (209) T 2ql3_A 136 ANFETARAFVGRGLGWTLLLQRPRVDVTYEGLPVV-VKPI--AEPKPASVAVVVAWHQEA 192 (209) T ss_dssp SCHHHHHHHHHHTSCBEEESCCCSSCBCTTSCBEE-EEEB--CSSCCCCEEEEEEEETTC T ss_pred CCHHHHHHHHHCCCEEEEEEHHHHHHHHHCCCCEE-EEEC--CCCCCCEEEEEEEECCCC T ss_conf 63777899998199599902688877864799789-9977--888874479999991989 No 53 >2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D Probab=28.88 E-value=26 Score=14.46 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=12.1 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 82899707988889999999999997 Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMD 29 (307) Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~ 29 (307) ++|+||.=+-.=+.++|+.+...|++ T Consensus 165 ~~i~i~~~~W~~~~a~t~v~~~iLe~ 190 (268) T 2b4l_A 165 DKINLAYVAWDSEIASTNVIGKVLED 190 (268) T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHH T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 75156424876189999999999998 No 54 >1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Probab=27.96 E-value=27 Score=14.36 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=37.0 Q ss_pred HHHCCCCCCC-EEEEEEEECCEEEEEEEEECCCCCEEEEEE----------EECCHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 8717764885-289999999989999999869987899999----------843988899999999999997060563 Q gi|254781037|r 238 AELDGSCKSA-IAGFAYCKGSTLYFYGIVLASDGKIFHEVS----------RNGNRCDAINIGRDAAQYIRFISNKNV 304 (307) Q Consensus 238 ~~L~GgC~~P-IGa~A~i~~~~l~l~a~v~s~DG~~~i~~~----------~~g~~~~a~~LG~~la~~Ll~~g~k~i 304 (307) ..+.|.-..| +.++ -.+. ++.+++.++++...+... ..++.+-+..+|+.+|+..++.|-+++ T Consensus 20 ~kl~~t~~rpRL~V~--rSnk--hiyaQlIdd~~~~tl~saSt~~k~~k~~~~~n~~aA~~vG~~ia~~a~~~gi~~v 93 (120) T 1ovy_A 20 KKIFGTTERPRLSVF--RSNK--HIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEKGIKQV 93 (120) T ss_dssp ----CCSSCCSEEEE--EETT--EEEEEEECCSSCCCEEEESTTSTTTCSSCTTSHHHHHHHHHHHHHHHHHHSSSCC T ss_pred HHHCCCCCCCEEEEE--EECC--EEEEEEEECCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 885078888669999--8178--2799999578897899963653443446799599999999999999998699889 No 55 >2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, alternative splicing, calcium, cell junction, coiled coil, glycoprotein, ION transport; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Probab=26.60 E-value=29 Score=14.20 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=50.3 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCC---CCCC-----CCCCCEEECCCCCHHH-H Q ss_conf 99999870983699740343211101221012223656831056652432---4332-----4567322047530288-8 Q gi|254781037|r 67 EIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQ---SLKD-----LALHSVIGTSSLRRKA-L 137 (307) Q Consensus 67 ele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~---~l~~-----lp~~a~IGTsS~RR~a-q 137 (307) ++-.+|.+|++|+|+-++-.-|... .-+... .+--...--+++.++.. ++.+ -..|..+||..---.. + T Consensus 107 ~~i~~l~~g~~Di~i~~~t~t~eR~-~~v~Fs-~Py~~~~~~i~~~~~~~~~~~~~d~~l~~~~~g~~~Gtv~~~~~~~~ 184 (294) T 2rc8_A 107 GLVGDLLSGTANMAVTSFSINTARS-QVIDFT-SPFFSTSLGILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDY 184 (294) T ss_dssp HHHHHHHHTSCSEECSSCBCCHHHH-TTSEEC-SCSEEEEEEEEEETTSCCCCSTTCHHHHSCCTTCCEECBTTSHHHHH T ss_pred HHHHHHHCCCCCEEEECCCCCHHHH-HHCEEC-CCEECCCCEEEEECCCCCCCCCCCHHHCCCEEEEEEEECCCCHHHHH T ss_conf 9999997799659953013687688-531741-20412660478745887544322124047733238996664289999 Q ss_pred HHHHHCCC----CCHHHCCCHHHHHHHHHC--CCCCEEEEEHHHHHHC Q ss_conf 99842377----310330767999998637--8765563014545421 Q gi|254781037|r 138 LLRWRSDI----SVIDFRGKIETRLNKLNN--NKAHAILLAYAGIKRL 179 (307) Q Consensus 138 l~~~~p~l----~~~~iRGNv~TRl~Kl~~--g~~DaiilA~Agl~RL 179 (307) ++...++. ....+ -+.+.-+..|.. |+.||+|.-.+-+.-+ T Consensus 185 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~g~g~vDa~i~d~~~~~~~ 231 (294) T 2rc8_A 185 VRQSFPEMHEYMRRYNV-PATPDGVQYLKNDPEKLDAFIMDKALLDYE 231 (294) T ss_dssp HHHHCHHHHHHHGGGCB-SSHHHHHHHHHSSSCCCSEEEEEHHHHHHH T ss_pred HHHHHHHHHHEEEEEEC-CCHHHHHHHHHCCCCEEEEEEECHHHHHHH T ss_conf 88640433310355303-877999987642781589998236889999 No 56 >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NADP-binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Probab=24.78 E-value=31 Score=13.99 Aligned_cols=52 Identities=12% Similarity=-0.034 Sum_probs=38.5 Q ss_pred CCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHH Q ss_conf 7322047530288899842377310330767999998637876556301454 Q gi|254781037|r 124 HSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAG 175 (307) Q Consensus 124 ~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Ag 175 (307) .-+|+|.|.+|...++.+--+..+-.-..|+..+++.+..+.+|.++=+..+ T Consensus 190 ~~vi~~~s~~k~~~~~~lGa~~~id~~~~~~~~~i~~~t~~~~D~viD~vg~ 241 (371) T 3gqv_A 190 YIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITN 241 (371) T ss_dssp CEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCS T ss_pred CCEEEEECCCCCHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECCCC T ss_conf 9299997652004589719938997999889999999739996199998898 No 57 >1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1 Probab=23.56 E-value=33 Score=13.84 Aligned_cols=186 Identities=10% Similarity=0.091 Sum_probs=96.3 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740 Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307) Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307) ..++||+-.+-...+-...+. .+.+. +|++++++... .+.++.+.|.+|++|+++.+ T Consensus 93 g~l~i~~~~~~~~~~l~~~l~-~~~~~--~P~i~i~l~~~--------------------~~~~~~~~l~~~~~D~~i~~ 149 (324) T 1al3_A 93 GSLYVATTHTQARYALPGVIK-GFIER--YPRVSLHMHQG--------------------SPTQIAEAVSKGNADFAIAT 149 (324) T ss_dssp EEEEEEECHHHHHHTSHHHHH-HHHHH--CTEEEEEEEEC--------------------CHHHHHHHHHTTCCSEEEES T ss_pred CCEEEEECHHHHHHHHHHHHH-HHHHH--CCCCEEEEEEC--------------------CHHHHHHHHHCCCEEEEEEC T ss_conf 750675336878878999999-99975--89828999979--------------------87999866747982588630 Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCEEEEECCC-------CCCCCCCCCCEEE--CCCCCHHHHHH---HHHCCCCCHHHC Q ss_conf 34321110122101222365683105665243-------2433245673220--47530288899---842377310330 Q gi|254781037|r 84 AKDMPTKLLKGLQISAYLPREDIRDVFISHTA-------QSLKDLALHSVIG--TSSLRRKALLL---RWRSDISVIDFR 151 (307) Q Consensus 84 lKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~-------~~l~~lp~~a~IG--TsS~RR~aql~---~~~p~l~~~~iR 151 (307) .. ...++++...- --+++.-++++++. .++++|..-..|. .++..|..... ......++.--= T Consensus 150 ~~---~~~~~~~~~~~--l~~~~~~~~~~~~~~l~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (324) T 1al3_A 150 EA---LHLYDDLVMLP--CYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTA 224 (324) T ss_dssp SC---CCTTSCEEEEE--EEEECEEEEECTTSTTTTTSCCCHHHHHTSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEE T ss_pred CC---CCCCCCEEEEE--EEEEEEEEEECCCCHHCCCCCCCHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCEEEEE T ss_conf 67---67766505898--65300579974652210399999999962877204899848999999999769987569999 Q ss_pred CCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC---CHHHHHHHHHCC Q ss_conf 767999998637876556301454542162112223368667358543207899985276---124556776239 Q gi|254781037|r 152 GKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN---PKAQELVKVINH 223 (307) Q Consensus 152 GNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d---~~i~~il~~Ind 223 (307) .+.++-+.-+.+|.+-++ +....+..+.-...+ .++.....| +--+.+.+|++. ..+.++++.+.. T Consensus 225 ~~~~~~~~~v~~g~gi~~-lp~~~~~~~~~~~lv--~~~~~~~~~---~~~~~l~~r~~~~~s~~~~~fi~~~~~ 293 (324) T 1al3_A 225 TDADVIKTYVRLGLGVGV-IASMAVDPVSDPDLV--KLDANGIFS---HSTTKIGFRRSTFLRSYMYDFIQRFAP 293 (324) T ss_dssp SSHHHHHHHHHHTSCEEE-EEGGGCCTTTCTTSE--EEECBTTBC---CEEEEEEEETTCCCCHHHHHHHHHHCT T ss_pred CCHHHHHHHHHHCCEEEE-CHHHHHHHHHCCCEE--EEECCCCCC---CCEEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 999999999993997997-259897387489989--995878886---557999996968569999999999998 No 58 >2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR structural genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli K12} PDB: 3hfu_A Probab=23.05 E-value=33 Score=13.78 Aligned_cols=171 Identities=15% Similarity=0.106 Sum_probs=83.7 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740 Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307) Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307) -+|+||+=.|- +..-.-.+...+.+. +|++++++..- ...++.+.|.+|++|+++-. T Consensus 30 g~l~Ig~~~~~-~~~~l~~~l~~f~~~--~P~i~l~i~~~--------------------~~~~l~~~l~~g~~D~~i~~ 86 (238) T 2hxr_A 30 GSLRIAVTPTF-TSYFIGPLMADFYAR--YPSITLQLQEM--------------------SQEKIEDMLCRDELDVGIAF 86 (238) T ss_dssp -CEEEEECHHH-HTTTHHHHHHHHHHH--CTTSCEEEEEC--------------------CHHHHHHHHHTTSCSEEEEE T ss_pred EEEEEEEEHHH-HHHHHHHHHHHHHHH--CCCCEEEEECC--------------------CHHHHHHHHHCCCCHHHHHC T ss_conf 28999953789-999999999999998--89988997328--------------------87999999986983001202 Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCEEEEECC-------CCCCCCCCCCCEEEC--CCCCHHHHH---HHHHCCCCCHHHC Q ss_conf 3432111012210122236568310566524-------324332456732204--753028889---9842377310330 Q gi|254781037|r 84 AKDMPTKLLKGLQISAYLPREDIRDVFISHT-------AQSLKDLALHSVIGT--SSLRRKALL---LRWRSDISVIDFR 151 (307) Q Consensus 84 lKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~-------~~~l~~lp~~a~IGT--sS~RR~aql---~~~~p~l~~~~iR 151 (307) .... .+++. ...-..++-=++++++ ..++++|.....|.. .+.-|.... ....-+.++.--= T Consensus 87 ~~~~----~~~~~--~~~l~~~~~~~~~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (238) T 2hxr_A 87 APVH----SPELE--AIPLLTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEA 160 (238) T ss_dssp SSCC----CTTEE--EEEEEEEEEEEEEETTSGGGGCSEECGGGGGGCEEEEECTTSHHHHHHHHHHHHTTCCCEEEEEE T ss_pred CCCC----CCCHH--HHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECC T ss_conf 5544----31043--33345542232132004665403587999813968984899857999999999769987521236 Q ss_pred CCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC Q ss_conf 767999998637876556301454542162112223368667358543207899985276 Q gi|254781037|r 152 GKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN 211 (307) Q Consensus 152 GNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307) .+.++-+.-+.+|..=+ ++...-..+.+- .. .++.. .| .-.-.+++-.+++. T Consensus 161 ~~~~~~~~~v~~g~gi~-~~p~~~~~~~~~---~~-~~~~~--~~-~~~~~~~li~~~~~ 212 (238) T 2hxr_A 161 NSISAVLELIRRTSLST-LLPAAIATQHDG---LK-AISLA--PP-LLERTAVLLRRKNS 212 (238) T ss_dssp SCHHHHHHHHHHSSCBE-EEETHHHHHCTT---EE-EEEES--SC-SCEEEEEEEEETTS T ss_pred CCHHHHHHHHHHCCEEE-EEHHHHHHHCCC---CE-EEECC--CC-CCEEEEEEEEECCC T ss_conf 87799999999399799-702998603789---33-99788--99-86249999998959 No 59 >2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima} Probab=22.59 E-value=34 Score=13.72 Aligned_cols=165 Identities=13% Similarity=0.119 Sum_probs=94.8 Q ss_pred CCEEEEECC---CHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE Q ss_conf 828997079---88889999999999997408998338999997327411587556748622699999999870983699 Q gi|254781037|r 4 KPFRIGTRC---SPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA 80 (307) Q Consensus 4 ~~i~IgtR~---S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA 80 (307) -++|+++=. ++.. ...+..++.+++..+ -.+++++.+-.+.|. ..|+=+++..|.+|++ T Consensus 9 ~tlk~~~~~p~~~~~~-~~~~~fa~~v~e~s~-G~v~i~v~~~g~Lg~----------------~~e~~~~v~~G~vd~~ 70 (327) T 2hpg_A 9 YTLRFGHVLAPGEPYH-QAFLKWAKAVEEKTN-GDVRIEVFPSSQLGV----------------EEDIIEQIRMGAPVGW 70 (327) T ss_dssp EEEEEECCCSTTSHHH-HHHHHHHHHHHHHTT-TSEEEEEECCCCSCC----------------CCCHHHHHHHTCSEEE T ss_pred EEEEEECCCCCCCHHH-HHHHHHHHHHHHHCC-CEEEEEEECCCCCCC----------------HHHHHHHHHCCCCEEE T ss_conf 7999978889989899-999999999998769-929999966876688----------------7999999976997067 Q ss_pred EECCC------------CCCCCC---------------------------------CCCCEEEEECCCCCCCEEEEECC- Q ss_conf 74034------------321110---------------------------------12210122236568310566524- Q gi|254781037|r 81 VHSAK------------DMPTKL---------------------------------LKGLQISAYLPREDIRDVFISHT- 114 (307) Q Consensus 81 VHSlK------------DlP~~~---------------------------------~~~l~i~a~~~R~d~rD~lv~~~- 114 (307) +.|.= ++|-.. ..|+.+.++..-. +.-++.+++ T Consensus 71 ~~~~~~~~~~~p~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~~-~~~~~~~~~p 149 (327) T 2hpg_A 71 NTDSARLGMYVKDIGVMNLAYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQ-GYRHFVTNKP 149 (327) T ss_dssp EEEHHHHTTTSGGGGGGGSTTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEE-EEEEEEESSC T ss_pred EECCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCC-CEEEEECCCC T ss_conf 324301212566632023420046655588899999999986498999999999886298423121257-6056765888 Q ss_pred CCCCCCCCCCCEEECC-CCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHH Q ss_conf 3243324567322047-53028889984237731033076799999863787655630145454216211222336866 Q gi|254781037|r 115 AQSLKDLALHSVIGTS-SLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIE 192 (307) Q Consensus 115 ~~~l~~lp~~a~IGTs-S~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~ 192 (307) -.+++|| +|.+|-+. |+--...++.+ -..++.=....-..-|..|..||+....+++..+++.+...++..+. T Consensus 150 i~s~~Dl-kG~kiR~~g~~~~~~~~~~~----Ga~pv~~~~~ev~~aLqtG~iDg~~~~~~~~~~~~~~e~~~~~t~~~ 223 (327) T 2hpg_A 150 IRKPEDL-NGLRIRTPGAPAWQESIRSL----GAIPVAVNFGEIYTAVQTRAVDGAELTYANVYNGGLYEVLKYMSETG 223 (327) T ss_dssp CSSGGGG-TTCEEECCSSHHHHHHHHHH----TSEEECCCGGGHHHHHHTTSCSEEEECHHHHHHTTGGGTCCEEEEEE T ss_pred CCCHHHH-CCCEEEECCCHHHHHHHHHC----CCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCEEEECEEECCC T ss_conf 8997997-79859844874789999973----88310467641667987586458972420001355000204586289 No 60 >3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginosa PA01,structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Probab=21.95 E-value=35 Score=13.64 Aligned_cols=108 Identities=7% Similarity=-0.008 Sum_probs=53.1 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC-C---CCCCCCC-CCCEEEC--CCCCHHHHHHH Q ss_conf 99998709836997403432111012210122236568310566524-3---2433245-6732204--75302888998 Q gi|254781037|r 68 IEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHT-A---QSLKDLA-LHSVIGT--SSLRRKALLLR 140 (307) Q Consensus 68 le~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~-~---~~l~~lp-~~a~IGT--sS~RR~aql~~ 140 (307) ...++.+|++|+++=...--| +..... ....+-..+..-.++.+. . .+++++. .|..|+. +|.- ...+.. T Consensus 66 ~~~~~~~g~~d~~~~~~~~t~-~~~~~~-~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~-~~~~~~ 142 (239) T 3kbr_A 66 LMRDFADDRFDIAMSGISINL-ERQRQA-YFSIPYLRDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTN-EKFARA 142 (239) T ss_dssp HHHHHHTTCCSEECSSCBCCH-HHHTTC-EECSCSEEECEEEEEEGGGGGGGSSHHHHSSTTCEEEECTTSHH-HHHHHH T ss_pred HHHHHHCCCCCCCCCCCCCCH-HHHHHC-CCCCCEEECCCEEEEEECCCCCCCCHHHHHCCCCEEEECCCCHH-HHHHHH T ss_conf 899998599652233366897-774322-56743464252135520256765652444336870576567539-999987 Q ss_pred HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC Q ss_conf 423773103307679999986378765563014545421 Q gi|254781037|r 141 WRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL 179 (307) Q Consensus 141 ~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL 179 (307) ..|+.++..+- +.++-++.|.+|++|+.|.-..-...+ T Consensus 143 ~~~~~~i~~~~-~~~~~l~~L~~grvD~~i~~~~~~~~~ 180 (239) T 3kbr_A 143 NLKKARILVHP-DNVTIFQQIVDGKADLMMTDAIEARLQ 180 (239) T ss_dssp HCSSSEEEECC-CTTTHHHHHHTTSCSEEEEEHHHHHHH T ss_pred CCCCCEEEEEC-CHHHHHHHHHCCCCEEEEECHHHHHHH T ss_conf 08763453302-327676786369831999548999999 No 61 >1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A Probab=21.93 E-value=35 Score=13.64 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=71.5 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403 Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307) Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307) .+++|+-.+....+-........++ +|++.+++.. ....++.+.|.+|++|+++-.. T Consensus 92 ~i~~~~~~~~~~~~l~~~~~~~~~~---~p~v~~~i~~--------------------~~~~~~~~~l~~g~~Di~i~~~ 148 (294) T 1ixc_A 92 ELSVAYFGTPIYRSLPLLLRAFLTS---TPTATVSLTH--------------------MTKDEQVEGLLAGTIHVGFSRF 148 (294) T ss_dssp EEEEEECSGGGGTHHHHHHHHHHHH---CTTEEEEEEE--------------------CCHHHHHHHHHHTSCSEEEESC T ss_pred EEEEECCCCHHHHHHHHHHHHHHHC---CCCCCCCCEE--------------------ECCHHCCCCCCCCCEEEEEECC T ss_conf 3787325307999999999997531---8764443045--------------------2031003211479646888516 Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEECCC-------CCCCCCCCCCEEE-----CCCCCHHH--HHHHHHCCCCCHHH Q ss_conf 4321110122101222365683105665243-------2433245673220-----47530288--89984237731033 Q gi|254781037|r 85 KDMPTKLLKGLQISAYLPREDIRDVFISHTA-------QSLKDLALHSVIG-----TSSLRRKA--LLLRWRSDISVIDF 150 (307) Q Consensus 85 KDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~-------~~l~~lp~~a~IG-----TsS~RR~a--ql~~~~p~l~~~~i 150 (307) .. .++++....+ -.++--++++++. .+++++-.-..|. .++.|+.. ++....-..++.-- T Consensus 149 ~~----~~~~l~~~~l--~~~~~~~~~~~~h~~~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (294) T 1ixc_A 149 FP----RHPGIEIVNI--AQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARV 222 (294) T ss_dssp CC----CCTTEEEEEE--EEEEEEEEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEE T ss_pred CC----CCCCCCCCCC--CCCEEEEEEECCCHHHCCCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEE T ss_conf 77----7875422201--35207999827307653999999998189979963876751467777765324547744688 Q ss_pred CCCHHHHHHHHHCCCCCEEEEE Q ss_conf 0767999998637876556301 Q gi|254781037|r 151 RGKIETRLNKLNNNKAHAILLA 172 (307) Q Consensus 151 RGNv~TRl~Kl~~g~~DaiilA 172 (307) =.++.+-+.-+.+|.+-|++-. T Consensus 223 ~~~~~~~~~lv~~g~gia~lp~ 244 (294) T 1ixc_A 223 VEDATAALALTMAGAASSIVPA 244 (294) T ss_dssp CSSHHHHHHHHHTTSCBEEEEH T ss_pred ECCHHHHHHHHHHCCEEEECCH T ss_conf 6579999999994997998108 No 62 >1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus HB8} Probab=21.37 E-value=36 Score=13.56 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=17.1 Q ss_pred CCCCCCEEEEEEEECCEEEEEE Q ss_conf 7648852899999999899999 Q gi|254781037|r 242 GSCKSAIAGFAYCKGSTLYFYG 263 (307) Q Consensus 242 GgC~~PIGa~A~i~~~~l~l~a 263 (307) .||.+++-+++..+++...++. T Consensus 45 ~GCqS~vWl~~~~~~~~~~~~f 66 (136) T 1wlo_A 45 HECQTPFFVHADVEGGKVRLYF 66 (136) T ss_dssp TTSSSCCEEEEEEETTEEEEEE T ss_pred CCCCCCEEEEEEECCCCEEEEE T ss_conf 7677656899996188158999 No 63 >2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I} Probab=20.94 E-value=37 Score=13.51 Aligned_cols=175 Identities=8% Similarity=-0.006 Sum_probs=95.1 Q ss_pred EEEEE---CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 89970---798888999999999999740899833899999732741158755674862269999999987098369974 Q gi|254781037|r 6 FRIGT---RCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307) Q Consensus 6 i~Igt---R~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307) .+++| .+|... ...+..++.+++.... .+++++.+ .| .+|+ ..|+-+++..|.+|+++. T Consensus 4 ~k~a~~~P~~~~~~-~~~~~fa~~V~~~t~G-~v~i~~~~---~g---------~L~~----~~e~~~~v~~G~vd~~~~ 65 (301) T 2pfy_A 4 WTMTAEQPDANYLT-QNARQFADEVKAATAG-ALEIKVQS---NS---------TLLK----RPEVKRGVQQGVVQIGEV 65 (301) T ss_dssp EEEECSSCTTSHHH-HHHHHHHHHHHHHTTT-SEEEEEEC---TT---------SSSC----GGGHHHHHHHTSSSEEEE T ss_pred EEEECCCCCCCHHH-HHHHHHHHHHHHHCCC-EEEEEEEC---CC---------CCCC----HHHHHHHHHCCCCCCCEE T ss_conf 17627789988888-9999999999987599-08999956---87---------6588----799999997698775221 Q ss_pred CCCCCCCCCCCCCEEEEECC--CC-------------------------------CCCEEEEECC-CCCCCCCCCCCEEE Q ss_conf 03432111012210122236--56-------------------------------8310566524-32433245673220 Q gi|254781037|r 83 SAKDMPTKLLKGLQISAYLP--RE-------------------------------DIRDVFISHT-AQSLKDLALHSVIG 128 (307) Q Consensus 83 SlKDlP~~~~~~l~i~a~~~--R~-------------------------------d~rD~lv~~~-~~~l~~lp~~a~IG 128 (307) |.=.++...|. +.+...+- +. -+.-.+.+++ -.+++|| +|.+|- T Consensus 66 ~~~~~~~~~P~-~~~~~lP~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~pi~s~~Dl-kG~kiR 143 (301) T 2pfy_A 66 LVSALGNEDPL-FEIDSVPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQGIYTKKPVAALADL-KGTRFR 143 (301) T ss_dssp EGGGGTTTCGG-GGGGGSTTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCEEEESSCCSSGGGG-TTCEEE T ss_pred CHHHHHCCCCC-HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCCHHHH-CCCEEE T ss_conf 04665224730-1025676354779999987744468999999735907977516776136757998996897-698673 Q ss_pred CCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEE Q ss_conf 47530288899842377310330767999998637876556301454542162112223368667358543207899985 Q gi|254781037|r 129 TSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETH 208 (307) Q Consensus 129 TsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r 208 (307) +.|.-=. .....+-..++.-....=..-|..|..||.+.....+...++.+...++.... ..++...+.+. T Consensus 144 ~~~~~~~----~~~~~lGa~pv~~~~~evy~aLq~G~vDg~~~~~~~~~~~~~~ev~~~~~~~~-----~~~~~~~~~~n 214 (301) T 2pfy_A 144 AYSASTS----HMAALMGAVPTTVQTPEVPQAFSTGVIDAMLTSPATGVDSQAWDYVKYYYDAQ-----AFIPQSFVIAN 214 (301) T ss_dssp ECSHHHH----HHHHHTTSEEEECCGGGHHHHHHTTSCSBEEECHHHHHHTTGGGTCCEEEECC-----CCCCEEEEEEE T ss_pred CCCHHHH----HHHHHCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCCCCCCEEEEEEECCC-----CCHHHHHHHHH T ss_conf 4745699----99997588510244420146776584103424730001233421445773388-----52048899982 Q ss_pred C Q ss_conf 2 Q gi|254781037|r 209 V 209 (307) Q Consensus 209 ~ 209 (307) + T Consensus 215 ~ 215 (301) T 2pfy_A 215 K 215 (301) T ss_dssp H T ss_pred H T ss_conf 9 No 64 >1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Probab=20.85 E-value=37 Score=13.49 Aligned_cols=185 Identities=10% Similarity=0.067 Sum_probs=90.4 Q ss_pred CCCEEEEECCC--HHHH---------HHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHH Q ss_conf 88289970798--8889---------999999999997408998338999997327411587556748622699999999 Q gi|254781037|r 3 KKPFRIGTRCS--PLAL---------AHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKK 71 (307) Q Consensus 3 ~~~i~IgtR~S--~LAl---------~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~a 71 (307) -++|||||-.+ |... .-.+.+....++. +++++++.... .+...+ T Consensus 3 p~tirv~~~~~~pP~~~~d~~g~~~G~~~Dl~~~ia~~l----g~~~~~~~~~~--------------------~~~~~~ 58 (239) T 1lst_A 3 PQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRM----QVKCTWVASDF--------------------DALIPS 58 (239) T ss_dssp CSEEEEEECSCBTTTBEECTTCCEESHHHHHHHHHHHHH----TCEEEEEECCG--------------------GGHHHH T ss_pred CCEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHHH----CCCEEEEEECC--------------------HHHHHH T ss_conf 986999989997892589999988870999999999995----99689998030--------------------767899 Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCCCCHHHH-HHH--HHCCC Q ss_conf 87098369974034321110122101222365683105665243---2433245673220475302888-998--42377 Q gi|254781037|r 72 LISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSSLRRKAL-LLR--WRSDI 145 (307) Q Consensus 72 Ll~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS~RR~aq-l~~--~~p~l 145 (307) +.+|..|+++.++-.-| +..+.+... .+-...+.-+++.+.. .++++|. |.+||+-+--...+ +.. ..|++ T Consensus 59 ~~~~~~d~~~~~~~~~~-eR~~~~~~s-~p~~~~~~~~~~~~~~~~~~~~~dL~-~~~i~~~~g~~~~~~~~~~~~~~~~ 135 (239) T 1lst_A 59 LKAKKIDAIISSLSITD-KRQQEIAFS-DKLYAADSRLIAAKGSPIQPTLESLK-GKHVGVLQGSTQEAYANDNWRTKGV 135 (239) T ss_dssp HHTTSCSEECSSCBCCH-HHHHHCEEC-SCSBCCCEEEEEETTCCCCSSHHHHT-TCEEEEETTSHHHHHHHHHTGGGTC T ss_pred HHCCCCCEEEECCCCCH-HHHHHCCCC-CCEEECCCCCCCCCCCCCCCCHHHHC-CCEEEEECCCHHHHHHHHHHCCCEE T ss_conf 86687678996787997-898520135-74574143110015887679978968-9989998575277666654133102 Q ss_pred CCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCC-------CCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHH Q ss_conf 3103307679999986378765563014545421621122-------233686673585432078999852761245567 Q gi|254781037|r 146 SVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVI-------KEILNIEDFPPSPGQGAICIETHVNNPKAQELV 218 (307) Q Consensus 146 ~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i-------~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il 218 (307) +++.+- +.+.-+..+..|.+|+.+.-...+...-..... ...+....+.+ . .+++-.++++..+.+.+ T Consensus 136 ~~~~~~-~~~~~~~~l~~g~vD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~k~~~~l~~~i 210 (239) T 1lst_A 136 DVVAYA-NQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFG---D-GTGVGLRKDDTELKAAF 210 (239) T ss_dssp EEEEES-SHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHC---S-SBCCEECTTCHHHHHHH T ss_pred EEEEEC-CHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC---C-EEEEEEECCCHHHHHHH T ss_conf 356308-989999999849713999438999999996756665234166444542356---4-07999908999999999 Q ss_pred H Q ss_conf 7 Q gi|254781037|r 219 K 219 (307) Q Consensus 219 ~ 219 (307) . T Consensus 211 n 211 (239) T 1lst_A 211 D 211 (239) T ss_dssp H T ss_pred H T ss_conf 9 Done!