HHSEARCH alignment of GI: 254781037 and SCOP domain: d1p99a_

Alignment
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Staphylococcus aureus [TaxId: 1280]}
Probab=97.44  E-value=0.00092  Score=41.74  Aligned_cols=195  Identities=13%  Similarity=0.077  Sum_probs=106.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             28997079888899999999999974089983389999973274115875567486226999999998709836997403
Q gi|254781037|r    5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA   84 (307)
Q Consensus         5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl   84 (307)
                      +++||..++.=-.|+  .+.+.+++    .++++|++.+.. |-                  +..+||.+|++|++.-  
T Consensus         1 ~v~ig~~~~~~~~~~--~~~~~~~k----~Gl~Ve~~~f~~-~~------------------~~~~Al~~G~iD~~~~--   53 (255)
T d1p99a_           1 KVTIGVASNDTKAWE--KVKELAKK----DDIDVEIKHFSD-YN------------------LPNKALNDGDIDMNAF--   53 (255)
T ss_dssp             CEEEEESSSCCHHHH--HHHHHHGG----GTCCEEEEECSS-TT------------------SHHHHHHTTSSSEEEE--
T ss_pred             CEEEEECCCCHHHHH--HHHHHHHH----CCCEEEEEECCC-CH------------------HHHHHHHCCCCCEECC--
T ss_conf             979997288389999--99999997----498799997078-04------------------6899987599777845--


Q ss_pred             CCCCCC-----CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCC----CHHHHHHHHHCCCC---------
Q ss_conf             432111-----012210122236568310566524324332456732204753----02888998423773---------
Q gi|254781037|r   85 KDMPTK-----LLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSL----RRKALLLRWRSDIS---------  146 (307)
Q Consensus        85 KDlP~~-----~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~----RR~aql~~~~p~l~---------  146 (307)
                      =..|.-     -.++..+.++....-..-++.++..+++.++++|.+|+++..    .+...++...-.++         
T Consensus        54 ~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~GkkIavp~~~s~~~~~l~~l~~~~~i~l~~~~~~~~  133 (255)
T d1p99a_          54 QHFAFLDQYKKAHKGTKISALSTTVLAPLGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAG  133 (255)
T ss_dssp             EEHHHHHHHHHHCTTCCEEEEEEEEECCCEEECSSCSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTC
T ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEECCCCCCCCC
T ss_conf             78789999996679845998346423653100466553013689986981478818999999998659243157877777


Q ss_pred             -CHHHCCC--------HHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECC---CCHH
Q ss_conf             -1033076--------799999863787655630145454216211222336866735854320789998527---6124
Q gi|254781037|r  147 -VIDFRGK--------IETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVN---NPKA  214 (307)
Q Consensus       147 -~~~iRGN--------v~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~---d~~i  214 (307)
                       ..++-.|        ++.-.--+..|+.||.++...=..+.+........+..+...+.....++.+.+|..   ++.+
T Consensus       134 ~~~Di~~~~~~~~~~~~~~~~~a~~~g~vDaa~~~~p~~~~a~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~n~e~v  213 (255)
T d1p99a_         134 TVKDITSNPKHLKITAVDAQQTARALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTY  213 (255)
T ss_dssp             CGGGEEECTTCCEEEEECGGGTTGGGGTSSEEEECHHHHHHTTCCTTTSCSEECCCSSGGGGGGEEEEEEEGGGTTCHHH
T ss_pred             CHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEEECCHHHCCHHH
T ss_conf             76555524243665576666665531775489956549988077877776897577666787547999968225298999


Q ss_pred             HHHHHHHCCHHH
Q ss_conf             556776239788
Q gi|254781037|r  215 QELVKVINHEDT  226 (307)
Q Consensus       215 ~~il~~Ind~~T  226 (307)
                      ..+++.+.+.++
T Consensus       214 ~~~~~a~~~~e~  225 (255)
T d1p99a_         214 AKIVELYHSKEA  225 (255)
T ss_dssp             HHHHHHHHSHHH
T ss_pred             HHHHHHHCCHHH
T ss_conf             999999759999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Putative lipoprotein (NlpA family)
species: Staphylococcus aureus [TaxId: 1280]