Query gi|254781037|ref|YP_003065450.1| porphobilinogen deaminase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 307 No_of_seqs 169 out of 2086 Neff 5.8 Searched_HMMs 13730 Date Wed Jun 1 11:16:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781037.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1pdaa1 c.94.1.1 (A:3-219) Por 100.0 0 0 580.5 18.5 217 3-221 1-217 (217) 2 d1pdaa2 d.50.2.1 (A:220-307) P 99.9 3.2E-23 2.3E-27 167.7 12.2 85 222-306 1-85 (88) 3 d1xs5a_ c.94.1.1 (A:) Putative 97.9 0.00048 3.5E-08 43.6 14.4 206 2-247 1-239 (240) 4 d1p99a_ c.94.1.1 (A:) Putative 97.4 0.00092 6.7E-08 41.7 10.3 195 5-226 1-225 (255) 5 d2ozza1 c.94.1.1 (A:1-228) Hyp 97.1 0.0017 1.2E-07 40.0 8.8 169 34-229 39-214 (228) 6 d1xt8a1 c.94.1.1 (A:10-257) Pu 94.7 0.095 6.9E-06 28.7 8.1 153 68-230 65-226 (248) 7 d2czla1 c.94.1.1 (A:3-272) Hyp 93.4 0.15 1.1E-05 27.5 6.9 103 65-171 37-141 (270) 8 d1wdna_ c.94.1.1 (A:) Glutamin 89.1 0.68 5E-05 23.2 9.1 143 68-218 50-197 (223) 9 d2a5sa1 c.94.1.1 (A:7-142,A:14 87.0 0.91 6.6E-05 22.4 11.3 188 35-245 69-277 (277) 10 d1utha_ c.94.1.1 (A:) LysR-typ 82.4 1.5 0.00011 21.0 6.4 144 2-175 10-164 (219) 11 d1pb7a_ c.94.1.1 (A:) N-methyl 79.4 1.8 0.00013 20.4 7.7 194 35-246 76-289 (289) 12 d2nxoa1 c.94.1.1 (A:5-281) Hyp 74.2 2.4 0.00018 19.6 4.6 101 67-174 38-147 (277) 13 d1al3a_ c.94.1.1 (A:) Cofactor 73.8 2.6 0.00019 19.4 5.4 185 5-223 7-206 (237) 14 d1ex2a_ c.51.4.2 (A:) Maf prot 60.7 1.7 0.00012 20.6 1.6 114 123-260 3-116 (185) 15 d2j01s1 c.55.4.1 (S:23-108) Ri 60.3 4.2 0.00031 18.0 3.6 44 261-304 13-63 (86) 16 d2fyia1 c.94.1.1 (A:88-307) Ly 54.1 6.1 0.00044 17.0 11.7 183 5-221 7-204 (220) 17 d2esna2 c.94.1.1 (A:92-303) Pr 52.3 6.5 0.00047 16.8 8.8 146 2-174 6-163 (212) 18 d1lsta_ c.94.1.1 (A:) Lysine-, 51.5 6.7 0.00049 16.8 6.8 149 3-178 3-167 (238) 19 d1sw5a_ c.94.1.1 (A:) Osmoprot 51.3 6.7 0.00049 16.7 4.9 56 5-82 2-57 (270) 20 d1ixca2 c.94.1.1 (A:90-294) Ly 46.5 8 0.00058 16.3 12.3 171 5-211 3-187 (205) 21 d1ii5a_ c.94.1.1 (A:) Glutamat 45.3 8.3 0.00061 16.1 11.9 153 2-180 2-170 (226) 22 d2amha1 c.51.4.2 (A:7-207) Maf 44.8 3.2 0.00023 18.8 0.9 110 124-255 5-124 (201) 23 d1r9la_ c.94.1.1 (A:) Glycine 41.9 9.4 0.00068 15.8 4.1 58 4-84 8-65 (309) 24 d1zbma1 c.94.1.1 (A:2-261) Hyp 34.7 12 0.00088 15.1 7.0 99 65-171 37-140 (260) 25 d1i6aa_ c.94.1.1 (A:) Hydrogen 32.2 13 0.00097 14.8 9.7 174 4-211 5-190 (212) 26 d2gycm1 c.55.4.1 (M:3-115) Rib 29.5 15 0.0011 14.5 5.7 45 260-304 32-88 (113) 27 d2zjrl1 c.55.4.1 (L:8-111) Rib 26.8 3.6 0.00026 18.5 -1.3 45 260-304 30-80 (104) 28 d1sqwa1 b.122.1.1 (A:95-170) N 20.7 14 0.001 14.6 0.8 34 77-114 35-72 (76) No 1 >d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=580.54 Aligned_cols=217 Identities=41% Similarity=0.643 Sum_probs=212.7 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974 Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307) Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307) +|.||||||+|+||+|||++|.+.|++.+ |++++||++|+|+||++++.||+++||||+||+|||++|++|++||||| T Consensus 1 ~~~IrIgtR~S~LAl~Qa~~v~~~L~~~~--p~~~~ei~~i~T~GD~~~~~~l~~~ggkg~Ftkele~~Ll~~~iDiAVH 78 (217) T d1pdaa1 1 DNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVH 78 (217) T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHHC--TTCEEEEEECCCHHHHC---------CCCTTTHHHHHHHHTTSCSEEEE T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHH T ss_conf 98479996885999999999999999858--9981899998625876230344342016799999999997076435035 Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHH Q ss_conf 03432111012210122236568310566524324332456732204753028889984237731033076799999863 Q gi|254781037|r 83 SAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLN 162 (307) Q Consensus 83 SlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~ 162 (307) ||||||+++|++|.|+|+++|+||||+||+++++++++||+|++|||||+||++|++++||+++|++|||||+|||+||. T Consensus 79 S~KDlP~~~~~~l~i~a~~~R~d~rD~li~~~~~~l~~l~~~~~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~ 158 (217) T d1pdaa1 79 SMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD 158 (217) T ss_dssp EGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSTTTSCTTCEEECCCHHHHHHHHHHCTTSEEECCCSCHHHHHHHHH T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHCCCCCEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHH T ss_conf 33144532577651213335677300100467477736789998234651179999876888754664142343888856 Q ss_pred CCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHH Q ss_conf 78765563014545421621122233686673585432078999852761245567762 Q gi|254781037|r 163 NNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVI 221 (307) Q Consensus 163 ~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~I 221 (307) +|+|||+|||+|||+||++.++++++|++++|+||||||+||||||++|.++.+++++| T Consensus 159 ~g~~DaiILA~AGL~RL~l~~~i~~~l~~~~~~PA~gQGaiaIe~r~~d~~~~~il~~i 217 (217) T d1pdaa1 159 NGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAAL 217 (217) T ss_dssp TTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGG T ss_pred CCCCCEEEEEHHHHHHCCCCHHEEEECCHHHCCCHHHHHHEEEEECCCCHHHHHHHHCC T ss_conf 56867899555678654733301577585544794865054889817999999998549 No 2 >d1pdaa2 d.50.2.1 (A:220-307) Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=99.89 E-value=3.2e-23 Score=167.73 Aligned_cols=85 Identities=27% Similarity=0.406 Sum_probs=83.7 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCC Q ss_conf 39788888788999998717764885289999999989999999869987899999843988899999999999997060 Q gi|254781037|r 222 NHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRFISN 301 (307) Q Consensus 222 nd~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~l~a~v~s~DG~~~i~~~~~g~~~~a~~LG~~la~~Ll~~g~ 301 (307) ||++|+.|+.+||+||+.|+|||++||||||++++++++|+++|+|+||++.++.+.+++++++.++|+++|++|+++|| T Consensus 1 Nd~~T~~~v~aER~fL~~L~ggC~~PIga~A~~~~~~i~l~~~v~s~dG~~~~~~~~~g~~~~~~~lg~~la~~L~~~Ga 80 (88) T d1pdaa2 1 NHHETALRVTAERAMNTRLEGACQVPIGSYAELIDGEIWLRGLVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGA 80 (88) T ss_dssp CCHHHHHHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEEEEEEECTTSSCEEEEEEEECGGGHHHHHHHHHHHHHHTTH T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCH T ss_conf 98889999999999999838999886111359988879999999999898899999997788999999999999999089 Q ss_pred HHHCC Q ss_conf 56337 Q gi|254781037|r 302 KNVFN 306 (307) Q Consensus 302 k~iLn 306 (307) ++||+ T Consensus 81 ~~il~ 85 (88) T d1pdaa2 81 REILA 85 (88) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 3 >d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]} Probab=97.89 E-value=0.00048 Score=43.58 Aligned_cols=206 Identities=9% Similarity=0.048 Sum_probs=113.8 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 98828997079888899999999999974089983389999973274115875567486226999999998709836997 Q gi|254781037|r 2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307) Q Consensus 2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307) +.++||||.=.++-+... ....+.+++ .++++|++.+.. -.++.+||.+|++|++. T Consensus 1 ~~~ti~ig~~~~~~~~~l-~~~k~~~k~----~Gi~Ve~v~f~~-------------------g~~~~~Al~~G~iD~~~ 56 (240) T d1xs5a_ 1 KDETVGVGVLSEPHARLL-EIAKEEVKK----QHIELRIVEFTN-------------------YVALNEAVMRGDILMNF 56 (240) T ss_dssp CCEEEEEEECSTTHHHHH-HHHHHHHHT----TTEEEEEEECSC-------------------HHHHHHHHHHTSSSEEE T ss_pred CCCEEEEEECCCCCHHHH-HHHHHHHHH----CCCEEEEEEECC-------------------HHHHHHHHHCCCCCEEC T ss_conf 994499995479809999-999999997----498799998178-------------------06689999759966661 Q ss_pred ECCCCCCC----CCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCC----HHHHHHHHHCC--------- Q ss_conf 40343211----10122101222365683105665243243324567322047530----28889984237--------- Q gi|254781037|r 82 HSAKDMPT----KLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLR----RKALLLRWRSD--------- 144 (307) Q Consensus 82 HSlKDlP~----~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~R----R~aql~~~~p~--------- 144 (307) +-..|. ....+..+.++-.-.....+++++..+++.++..|.+|+++..- +...++...-- T Consensus 57 --~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~l~~~~~~s~~d~~~gkkia~p~~~s~~~~~l~~l~~~g~~~~~~~~~~ 134 (240) T d1xs5a_ 57 --FQHVPHMQQFNQEHNGDLVSVGNVHVEPLALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGL 134 (240) T ss_dssp --EEEHHHHHHHHHHHTCCEEEEEEEEECCCEEECSSCCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCT T ss_pred --CCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC T ss_conf --287789999997579728996004667669994687774361489889944787089999999997388401567666 Q ss_pred -------------CCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECC- Q ss_conf -------------731033076799999863787655630145454216211222336866735854320789998527- Q gi|254781037|r 145 -------------ISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVN- 210 (307) Q Consensus 145 -------------l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~- 210 (307) +.+.++...+.. +..++.||.++..--....+........+..+ ...+.+..+.+|++ T Consensus 135 ~~~~~di~~~~~~~~~~~~~~~~~a----~~~~~vdaa~~~~p~~~~a~~~~~~~~~~~~~----~~~~~~~~~v~~~~~ 206 (240) T d1xs5a_ 135 FATVEDVQQNVRNVVLQEVESALLP----RVFDQVDGAVINGNYAIMAGLSARRDGLAVEP----DASAYANVLVVKRGN 206 (240) T ss_dssp TCCGGGEEECTTCCEEEEECGGGHH----HHGGGSSEEEECHHHHHHTTCCTTTTCSEECS----CGGGGCEEEEEETTC T ss_pred CCCCCHHHHCCCCCCCCCCCHHHHH----HHHCCCCEEEECCHHHHHHCCCCCCCEEEECC----CCCCEEEEEEEECCC T ss_conf 6551013325544402357777778----76056658997643888706786655034348----899768999995655 Q ss_pred --CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf --6124556776239788888788999998717764885 Q gi|254781037|r 211 --NPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSA 247 (307) Q Consensus 211 --d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~P 247 (307) ++.+..+++.++..++.. -+.+..+|+--.| T Consensus 207 ~~~~~i~~~~~a~~~~e~~~------~I~~~~~g~~~~p 239 (240) T d1xs5a_ 207 EADARVQAVLRALCGGRVRT------YLKERYKGGEVAP 239 (240) T ss_dssp TTCHHHHHHHHHHTSHHHHH------HHHHHCTTSSSEE T ss_pred CCCHHHHHHHHHHCCHHHHH------HHHHHCCCCEEEC T ss_conf 39799999999977999999------9998669975537 No 4 >d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Staphylococcus aureus [TaxId: 1280]} Probab=97.44 E-value=0.00092 Score=41.74 Aligned_cols=195 Identities=13% Similarity=0.077 Sum_probs=106.4 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403 Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307) Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307) +++||..++.=-.|+ .+.+.+++ .++++|++.+.. |- +..+||.+|++|++.- T Consensus 1 ~v~ig~~~~~~~~~~--~~~~~~~k----~Gl~Ve~~~f~~-~~------------------~~~~Al~~G~iD~~~~-- 53 (255) T d1p99a_ 1 KVTIGVASNDTKAWE--KVKELAKK----DDIDVEIKHFSD-YN------------------LPNKALNDGDIDMNAF-- 53 (255) T ss_dssp CEEEEESSSCCHHHH--HHHHHHGG----GTCCEEEEECSS-TT------------------SHHHHHHTTSSSEEEE-- T ss_pred CEEEEECCCCHHHHH--HHHHHHHH----CCCEEEEEECCC-CH------------------HHHHHHHCCCCCEECC-- T ss_conf 979997288389999--99999997----498799997078-04------------------6899987599777845-- Q ss_pred CCCCCC-----CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCC----CHHHHHHHHHCCCC--------- Q ss_conf 432111-----012210122236568310566524324332456732204753----02888998423773--------- Q gi|254781037|r 85 KDMPTK-----LLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSL----RRKALLLRWRSDIS--------- 146 (307) Q Consensus 85 KDlP~~-----~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~----RR~aql~~~~p~l~--------- 146 (307) =..|.- -.++..+.++....-..-++.++..+++.++++|.+|+++.. .+...++...-.++ T Consensus 54 ~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~GkkIavp~~~s~~~~~l~~l~~~~~i~l~~~~~~~~ 133 (255) T d1p99a_ 54 QHFAFLDQYKKAHKGTKISALSTTVLAPLGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAG 133 (255) T ss_dssp EEHHHHHHHHHHCTTCCEEEEEEEEECCCEEECSSCSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTC T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEECCCCCCCCC T ss_conf 78789999996679845998346423653100466553013689986981478818999999998659243157877777 Q ss_pred -CHHHCCC--------HHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECC---CCHH Q ss_conf -1033076--------799999863787655630145454216211222336866735854320789998527---6124 Q gi|254781037|r 147 -VIDFRGK--------IETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVN---NPKA 214 (307) Q Consensus 147 -~~~iRGN--------v~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~---d~~i 214 (307) ..++-.| ++.-.--+..|+.||.++...=..+.+........+..+...+.....++.+.+|.. ++.+ T Consensus 134 ~~~Di~~~~~~~~~~~~~~~~~a~~~g~vDaa~~~~p~~~~a~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~n~e~v 213 (255) T d1p99a_ 134 TVKDITSNPKHLKITAVDAQQTARALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTY 213 (255) T ss_dssp CGGGEEECTTCCEEEEECGGGTTGGGGTSSEEEECHHHHHHTTCCTTTSCSEECCCSSGGGGGGEEEEEEEGGGTTCHHH T ss_pred CHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEEECCHHHCCHHH T ss_conf 76555524243665576666665531775489956549988077877776897577666787547999968225298999 Q ss_pred HHHHHHHCCHHH Q ss_conf 556776239788 Q gi|254781037|r 215 QELVKVINHEDT 226 (307) Q Consensus 215 ~~il~~Ind~~T 226 (307) ..+++.+.+.++ T Consensus 214 ~~~~~a~~~~e~ 225 (255) T d1p99a_ 214 AKIVELYHSKEA 225 (255) T ss_dssp HHHHHHHHSHHH T ss_pred HHHHHHHCCHHH T ss_conf 999999759999 No 5 >d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Probab=97.13 E-value=0.0017 Score=40.02 Aligned_cols=169 Identities=13% Similarity=0.080 Sum_probs=92.9 Q ss_pred CCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEC Q ss_conf 98338999997327411587556748622699999999870983699740343211101221012223656831056652 Q gi|254781037|r 34 PPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISH 113 (307) Q Consensus 34 p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~ 113 (307) .++.+|++.+.+.+ +.-++|.+|++|+|+-|.=..-.....+.....+.- .+. .++.+ T Consensus 39 ~Gl~ve~~~~~g~~-------------------~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~--~~~-~~v~~ 96 (228) T d2ozza1 39 DGIPFYYAHMRGAD-------------------IRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALEL--GPH-TYVGE 96 (228) T ss_dssp TTSCEEEEECSCHH-------------------HHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEEC--CTT-SSSCC T ss_pred CCCEEEEEEECCCH-------------------HHHHHHHCCCCCEEECCCHHHHHHHHCCCCCEEEEE--ECC-EEECC T ss_conf 39828999913806-------------------789999769977786171899999863898369997--443-04504 Q ss_pred CC---CCCCCCCCCCEEECCC--CCHHHHHHHHH--CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCC Q ss_conf 43---2433245673220475--30288899842--37731033076799999863787655630145454216211222 Q gi|254781037|r 114 TA---QSLKDLALHSVIGTSS--LRRKALLLRWR--SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIK 186 (307) Q Consensus 114 ~~---~~l~~lp~~a~IGTsS--~RR~aql~~~~--p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~ 186 (307) ++ +++++| +|.+||+.. .-+....+... .+++++++ ....-+.-|.+|+.||.++.......+....... T Consensus 97 ~~~~i~~~~dL-kGk~vgv~~~s~~~~~l~~~~~~~~~v~~v~~--~~~~~~~al~~G~vDa~v~~~~~~~~~~~~~~~~ 173 (228) T d2ozza1 97 HQLICRKGESG-NVKRVGLDSRSADQKIMTDVFFGDSDVERVDL--SYHESLQRIVKGDVDAVIWNVVAENELTMLGLEA 173 (228) T ss_dssp EEEEEETTCGG-GCCEEEECTTCHHHHHHHHHHHTTSCCEEEEC--CHHHHHHHHHHTSCCEEEEEC-CHHHHHHTTEEE T ss_pred CCCCCCCHHHC-CCCEEEECCCCHHHHHHHHCCCCCCCEEEEEC--CHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCC T ss_conf 67666783550-89989966998689999984998345478857--9999999997296229996728789987457666 Q ss_pred CCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHH Q ss_conf 3368667358543207899985276124556776239788888 Q gi|254781037|r 187 EILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDS 229 (307) Q Consensus 187 ~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~ 229 (307) ..+..+...+.++. -.+.+|+++..+..+++.+-+..-... T Consensus 174 ~~~~~~~~~~~~~~--~vivir~~~~~v~~lv~a~ie~~e~~~ 214 (228) T d2ozza1 174 TPLTDDPRFLQATE--AVVLTRVDDYPMQQLLRAVVDKHALLA 214 (228) T ss_dssp EECCSCHHHHHTTC--EEEEEETTCHHHHHHHHHHCCHHHHHH T ss_pred CEEECCCCCCCCEE--EEEEECCCCHHHHHHHHHHHHHHHHHH T ss_conf 31102655566516--999986981999999999996899999 No 6 >d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Probab=94.74 E-value=0.095 Score=28.72 Aligned_cols=153 Identities=10% Similarity=0.141 Sum_probs=84.4 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECC--CCCHHHHHHHHH Q ss_conf 999987098369974034321110122101222365683105665243---243324567322047--530288899842 Q gi|254781037|r 68 IEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTS--SLRRKALLLRWR 142 (307) Q Consensus 68 le~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTs--S~RR~aql~~~~ 142 (307) .-.+|.+|++|++.-.+..-|.. ...+.... |=-...-+|+.+.+ .++++| .|.+||+- |.- ..+++..+ T Consensus 65 ~~~~l~~g~~d~~~~~~~~t~~R-~~~~~fs~--p~~~~~~~~~~~~~~~i~~~~dl-~g~~i~v~~gs~~-~~~l~~~~ 139 (248) T d1xt8a1 65 RVEFLKSNKVDIILANFTQTPQR-AEQVDFCS--PYMKVALGVAVPKDSNITSVEDL-KDKTLLLNKGTTA-DAYFTQNY 139 (248) T ss_dssp HHHHHHTTSCSEECSSCBCCHHH-HTTEEECC--CCEEEEEEEEEETTCCCCSSGGG-TTSEEEEETTSHH-HHHHHHHC T ss_pred CCCCCCCCCCCCCCCCCCCCHHH-HCCEEECC--CCCCCCEEEEEECCCCCCHHHHH-CCCEEEECCCCHH-HHHHHCCC T ss_conf 34301257632113335544412-31113436--62001115788627631345551-3410353378718-87653112 Q ss_pred CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHH--- Q ss_conf 37731033076799999863787655630145454216211222336866735854320789998527612455677--- Q gi|254781037|r 143 SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVK--- 219 (307) Q Consensus 143 p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~--- 219 (307) |+.+++... +.+.-+++|.+|++|+.+.....+..+-..+. ...+. +.|...+.-+++-.+++|+++.+.+. T Consensus 140 ~~~~i~~~~-s~~~~~~~l~~g~vD~~i~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~i~v~k~~~~l~~~in~~l 214 (248) T d1xt8a1 140 PNIKTLKYD-QNTETFAALMDKRGDALSHDNTLLFAWVKDHP-DFKMG---IKELGNKDVIAPAVKKGDKELKEFIDNLI 214 (248) T ss_dssp TTSEEEEES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCT-TEEEE---EEEEEEEEEECCEEETTCHHHHHHHHHHH T ss_pred CCCCCCCCC-CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC-CCEEE---CCCCCCCCEEEEEEECCCHHHHHHHHHHH T ss_conf 232222222-11567776300233322154999999998599-51684---25678775599999799999999999999 Q ss_pred -HHCCHHHHHHH Q ss_conf -62397888887 Q gi|254781037|r 220 -VINHEDTWDSV 230 (307) Q Consensus 220 -~Ind~~T~~~v 230 (307) .+....+.... T Consensus 215 ~~i~~~G~~~~i 226 (248) T d1xt8a1 215 IKLGQEQFFHKA 226 (248) T ss_dssp HHHHTTTHHHHH T ss_pred HHHHHCCHHHHH T ss_conf 999977779999 No 7 >d2czla1 c.94.1.1 (A:3-272) Hypothetical protein TTHA1568 {Thermus thermophilus [TaxId: 274]} Probab=93.39 E-value=0.15 Score=27.51 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=67.2 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHH--HHHHHH Q ss_conf 999999987098369974034321110122101222365683105665243243324567322047530288--899842 Q gi|254781037|r 65 TEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKA--LLLRWR 142 (307) Q Consensus 65 tkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~a--ql~~~~ 142 (307) ..+|.+.+.+|++|++.=|.=..|....+-..+-++--......+++..+ ..+++|. |.+|+.++--+.+ .++.+. T Consensus 37 ~~~LN~~~~~g~lDv~~iSs~~y~~~~~~y~llpsiss~G~v~svll~s~-~p~e~l~-~~~Ial~~~s~TS~~Llkill 114 (270) T d2czla1 37 VETLNRWALEGRLPLTKLSYAAYAQVRDRYVALRSGGALGRGVGPLVVAR-GPLQALE-GLRVAVPGRHTTAYFLLSLYA 114 (270) T ss_dssp HHHHHHHHHTTCCSEEEEEHHHHTTCTTTEEECSSSCEEESSCCCEEEES-SCCSCCT-TCEEEESCTTSHHHHHHHHHC T ss_pred HHHHHHHHHCCCCCEEEHHHHHHHHCCCCEEECCCEEECCCCCCEEEEEC-CCHHHCC-CCEEEECCCCCHHHHHHHHHH T ss_conf 99999999849987871349999846256977013644699877499827-9812315-986997887679999999998 Q ss_pred CCCCCHHHCCCHHHHHHHHHCCCCCEEEE Q ss_conf 37731033076799999863787655630 Q gi|254781037|r 143 SDISVIDFRGKIETRLNKLNNNKAHAILL 171 (307) Q Consensus 143 p~l~~~~iRGNv~TRl~Kl~~g~~Daiil 171 (307) ++...++++ -++....+..|+.||.+| T Consensus 115 ~~~~~~~~~--~~~i~~~~~~g~~da~Ll 141 (270) T d2czla1 115 QGFVPVEVR--YDRILPMVAQGEVEAGLI 141 (270) T ss_dssp SSCEEEECC--GGGHHHHHHTTSSSEEEE T ss_pred HHCCCCCCC--CCCCCCHHHCCCCCEEEE T ss_conf 446750566--113682655488872686 No 8 >d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Probab=89.05 E-value=0.68 Score=23.17 Aligned_cols=143 Identities=16% Similarity=0.088 Sum_probs=75.6 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC-C---CCCCCCCCCCEEECCCCC-HHHHHHHHH Q ss_conf 99998709836997403432111012210122236568310566524-3---243324567322047530-288899842 Q gi|254781037|r 68 IEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHT-A---QSLKDLALHSVIGTSSLR-RKALLLRWR 142 (307) Q Consensus 68 le~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~-~---~~l~~lp~~a~IGTsS~R-R~aql~~~~ 142 (307) +-.+|.+|++|+++.++---|... ..+.... +--.. .-+++.+. . .++++|. |.+||...-- -...++..+ T Consensus 50 ~~~~l~~g~~D~~~~~~~~~~~r~-~~~~~s~-p~~~~-~~~~~~~~~~~~i~~~~dl~-~~~v~v~~g~~~~~~~~~~~ 125 (223) T d1wdna_ 50 IIPALQTKNVDLALAGITITDERK-KAIDFSD-GYYKS-GLLVMVKANNNDVKSVKDLD-GKVVAVKSGTGSVDYAKANI 125 (223) T ss_dssp HHHHHHTTSSSEEEEEEECCHHHH-TTSEECS-CCEEE-EEEEEEETTCCSCSSSTTTT-TCEEEEETTSHHHHHHHHHC T ss_pred HHHHHHHCCCEEEECCCCCCHHHH-CCEEECC-CEEEE-EEEEEEECCCCCCCCHHHHC-CCEEEEEEECCHHHHHHHHC T ss_conf 776543032102302544535465-0168615-67986-36999999999989979977-99799996023004556523 Q ss_pred CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHH Q ss_conf 3773103307679999986378765563014545421621122233686673585432078999852761245567 Q gi|254781037|r 143 SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELV 218 (307) Q Consensus 143 p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il 218 (307) ++.++.. .-+.++-+..|..|+.|+.+....-+.-+-....... .....+......+++-.+++++.+.+.+ T Consensus 126 ~~~~~~~-~~~~~~~~~~l~~g~vD~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~~l~~~i 197 (223) T d1wdna_ 126 KTKDLRQ-FPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQ---FKAVGDSLEAQQYGIAFPKGSDELRDKV 197 (223) T ss_dssp CCSEEEE-ESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTT---EEEEEEEEEEEEEEEEECTTCHHHHHHH T ss_pred CCCCEEE-ECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC---CEECCCCCCCCEEEEEEECCCHHHHHHH T ss_conf 4453145-5788999999865885643466277655444058875---3012777776508999979899999999 No 9 >d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Probab=87.03 E-value=0.91 Score=22.37 Aligned_cols=188 Identities=14% Similarity=0.059 Sum_probs=87.8 Q ss_pred CCEEEEEEEEE--ECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEC--CCCCCCEEE Q ss_conf 83389999973--27411587556748622699999999870983699740343211101221012223--656831056 Q gi|254781037|r 35 PHNIVIIPLST--KGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYL--PREDIRDVF 110 (307) Q Consensus 35 ~~~~ei~~i~T--~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~--~R~d~rD~l 110 (307) ++++|++.+.. -|... + |-|. ++-.+|.+|++|+++.++---|.. -....+. --...--++ T Consensus 69 g~~~e~~~v~~~~~g~~~-~---------~~w~-~~l~~l~~g~~Di~i~~~tit~eR----~~~v~Fs~Py~~~~~~il 133 (277) T d2a5sa1 69 KFTYDLYLVTNGKHGKKV-N---------NVWN-GMIGEVVYQRAVMAVGSLTINEER----SEVVDFSVPFVETGISVM 133 (277) T ss_dssp TCCEEEEECCSSSSCCEE-T---------TEEC-HHHHHHHTTSCSEECSSCBCCHHH----HTTEEECCCCEEECEEEE T ss_pred CCCEEEEECCCCCCCCCC-C---------CCHH-HHHHHHHCCCEEEEEECCEEEHHH----HHHHCCCCCCEECCEEEE T ss_conf 998799984677758657-8---------8878-987413156079997701765655----532035688164136789 Q ss_pred EECCCC--------CCCCCCCCCEEECCCCCHHH-HHHHHHCCCCCH---HHCCCHHHHHHHHHCCCCCEEEEEHHHHHH Q ss_conf 652432--------43324567322047530288-899842377310---330767999998637876556301454542 Q gi|254781037|r 111 ISHTAQ--------SLKDLALHSVIGTSSLRRKA-LLLRWRSDISVI---DFRGKIETRLNKLNNNKAHAILLAYAGIKR 178 (307) Q Consensus 111 v~~~~~--------~l~~lp~~a~IGTsS~RR~a-ql~~~~p~l~~~---~iRGNv~TRl~Kl~~g~~DaiilA~Agl~R 178 (307) +.++.. +..++..+.++||..---.. .++..+|..... .---+.+.-+..|.+|++||.|.-.+-+.- T Consensus 134 v~k~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~Da~i~d~~~~~y 213 (277) T d2a5sa1 134 VSRQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNY 213 (277) T ss_dssp EETCCCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHH T ss_pred EECCCCCCCHHHHCCCCCCCHHEEEECCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCCEECCCHHHHHH T ss_conf 85476667846752833344011551223115889998754542436798447998999999876995511055899877 Q ss_pred CCCCC---CCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHH--HHHHHHHHHHHHCCCCC Q ss_conf 16211---222336866735854320789998527612455677623978888--87889999987177648 Q gi|254781037|r 179 LKKEK---VIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWD--SVNCERAFLAELDGSCK 245 (307) Q Consensus 179 L~l~~---~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~--~v~aER~fL~~L~GgC~ 245 (307) +-..+ .......+..| ..--.|+-.+++++ . ...||..-... .-..++-.-+=++|-|| T Consensus 214 ~~~~~~~~~l~~~~~~~~~----~~~~ygia~~k~s~-l---~~~in~al~~l~~~G~~~~L~~KW~~g~~~ 277 (277) T d2a5sa1 214 KAGRDEGCKLVTIGSGYIF----ATTGYGIALQKGSP-W---KRQIDLALLQFVGDGEMEELETLWLTGICH 277 (277) T ss_dssp HHHTCTTSCEEEEECCCGG----GCEEECCEEETTCT-T---HHHHHHHHHHHHHHTHHHHHHHHHTCCCCC T ss_pred HHHHCCCCCEEEECCCCCC----CCCEEEEEEECCHH-H---HHHHHHHHHHHHHCCHHHHHHHHHCCCCCC T ss_conf 8864789758993478776----76158999959829-9---999999999999798999997300599799 No 10 >d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]} Probab=82.45 E-value=1.5 Score=21.05 Aligned_cols=144 Identities=14% Similarity=0.081 Sum_probs=77.8 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 98828997079888899999999999974089983389999973274115875567486226999999998709836997 Q gi|254781037|r 2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307) Q Consensus 2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307) ..++|+||.-.|..+..-...+. .+.+.+ |++++++.. ++ ..++.+.|.+|++|+|+ T Consensus 10 ~~~~~rI~~~~~~~~~~lp~ll~-~f~~~~--P~v~l~i~~----~~----------------~~~~~~~l~~g~~D~~i 66 (219) T d1utha_ 10 STRTFNLAMTDIGEMYFMPPLME-ALAQRA--PHIQISTLR----PN----------------AGNLKEDMESGAVDLAL 66 (219) T ss_dssp CCCEEEEECCHHHHHHHHHHHHH-HHHHHC--TTCEEEEEC----TT----------------SSCHHHHHHHTSCCEEE T ss_pred CCCEEEEEECHHHHHHHHHHHHH-HHHHHC--CCCEEEEEE----CC----------------HHHHHHHHHCCCCEEEE T ss_conf 69789999727999999999999-999988--998899995----55----------------78799998648840566 Q ss_pred ECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC------CCCCCCCCCCCEEE---CCCCCHHH--HHHHHHCCCCCHHH Q ss_conf 403432111012210122236568310566524------32433245673220---47530288--89984237731033 Q gi|254781037|r 82 HSAKDMPTKLLKGLQISAYLPREDIRDVFISHT------AQSLKDLALHSVIG---TSSLRRKA--LLLRWRSDISVIDF 150 (307) Q Consensus 82 HSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~------~~~l~~lp~~a~IG---TsS~RR~a--ql~~~~p~l~~~~i 150 (307) ....+.. +++..-. +-++. .=+++.++ ..++.++-....+. .++.|+.. .+.....+.++.-- T Consensus 67 ~~~~~~~----~~~~~~~-l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (219) T d1utha_ 67 GLLPELQ----TGFFQRR-LFRHR-YVCMFRKDHPSAKSPMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLV 140 (219) T ss_dssp ECCTTCC----TTEEEEE-EEEEC-EEEEEETTCSSCCSSCCHHHHHHSEEEEECCTTSGGGGHHHHHHHTTCCCEEEEE T ss_pred EECCCCC----CCCHHHH-CCCCC-CCCCCCCCCHHHHCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCC T ss_conf 4124555----5201211-00000-0101235515553013489882488188327754057999999744876653456 Q ss_pred CCCHHHHHHHHHCCCCCEEEEEHHH Q ss_conf 0767999998637876556301454 Q gi|254781037|r 151 RGKIETRLNKLNNNKAHAILLAYAG 175 (307) Q Consensus 151 RGNv~TRl~Kl~~g~~DaiilA~Ag 175 (307) -.+..+-+.-+.+|.+-+++ ...- T Consensus 141 ~~~~~~~~~~v~~~~gi~i~-p~~~ 164 (219) T d1utha_ 141 VPHFIAIGPILHSTDLIATV-PQRF 164 (219) T ss_dssp ESSSTTHHHHHHTSSCBEEE-EHHH T ss_pred CCCHHHHHHHHHCCCCCEEC-HHHH T ss_conf 78789999997378963313-3999 No 11 >d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=79.42 E-value=1.8 Score=20.39 Aligned_cols=194 Identities=10% Similarity=0.010 Sum_probs=91.3 Q ss_pred CCEEEEEEEE--EECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEE Q ss_conf 8338999997--32741158755674862269999999987098369974034321110122101222365683105665 Q gi|254781037|r 35 PHNIVIIPLS--TKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFIS 112 (307) Q Consensus 35 ~~~~ei~~i~--T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~ 112 (307) ++++|++.+. +-|.......... +-| .++-.+|..|++|+++-++-.-|-.. .......+--.. .-+|+. T Consensus 76 g~~~e~~~v~~~~~g~~~~~~~~~~----~~w-~~~~~~l~~g~~Di~~~~~s~t~eR~--~~~~Fs~Py~~~-~~~l~v 147 (289) T d1pb7a_ 76 NFTYEVHLVADGKFGTQERVNNSNK----KEW-NGMMGELLSGQADMIVAPLTINNERA--QYIEFSKPFKYQ-GLTILV 147 (289) T ss_dssp TCCEEEEECTTCCCCCEEECTTSSC----EEE-CHHHHHHHHTSCSEECSSCBCCHHHH--TTEEECSCSEEE-EEEEEE T ss_pred CCCEEEEECCCCCCCCCCCCCCCCC----CCH-HHHHHHHHHHHEEEEEECCCCCHHHH--HHCCCCCCCCEE-EEEEEE T ss_conf 9927999855665565444465566----686-67666653311107852365678999--736434200142-359999 Q ss_pred CCCCC--------CCCCCCCCEEECCC---CCH----HHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHH Q ss_conf 24324--------33245673220475---302----8889984237731033076799999863787655630145454 Q gi|254781037|r 113 HTAQS--------LKDLALHSVIGTSS---LRR----KALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIK 177 (307) Q Consensus 113 ~~~~~--------l~~lp~~a~IGTsS---~RR----~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~ 177 (307) ++... +.++..+.++||.. ... .......+|+.++.. -.+....+..|.+|+.||++....-+. T Consensus 148 rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~g~~da~i~d~~~~~ 226 (289) T d1pb7a_ 148 KKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHN-YESAAEAIQAVRDNKLHAFIWDSAVLE 226 (289) T ss_dssp ETTCCCCSTTCHHHHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTC-BSSHHHHHHHHHTTSCSEEEEEHHHHH T ss_pred ECCCCCCCCCCHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEE-CCCHHHHHHHHHCCCEEEEEEHHHHHH T ss_conf 9899766544433168740599998643789999986466653066646997-089999999986897179983056799 Q ss_pred HCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHH--HHHHHHHHHHHC-CCCCC Q ss_conf 2162112223368667358543207899985276124556776239788888--788999998717-76488 Q gi|254781037|r 178 RLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDS--VNCERAFLAELD-GSCKS 246 (307) Q Consensus 178 RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~--v~aER~fL~~L~-GgC~~ 246 (307) .+.-........ .+....--+++-.+++++ ++..+|..-.... -..++-.-+-++ +.|.+ T Consensus 227 ~~~~~~~~l~~~-----~~~~~~~~~~~a~~k~~~----l~~~in~al~~l~~~G~~~~l~~Kw~~~~~c~~ 289 (289) T d1pb7a_ 227 FEASQKCDLVTT-----GELFFRSGFGIGMRKDSP----WKQNVSLSILKSHENGFMEDLDKTWVRYQECDS 289 (289) T ss_dssp HHHHHCTTEEEC-----SSCSEEEEECCEEETTCS----SHHHHHHHHHHHHHSSHHHHHHHHHTSSSCCCC T ss_pred HHHHHCCCEEEE-----CCCCCCEEEEEEECCCHH----HHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC T ss_conf 987528987992-----666676039999908819----999999999999979899999986169999999 No 12 >d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]} Probab=74.22 E-value=2.4 Score=19.61 Aligned_cols=101 Identities=13% Similarity=0.066 Sum_probs=53.1 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCEEE--EECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHH--HHHH Q ss_conf 99999870983699740343211101221012--2236568310566524324332456732204753028889--9842 Q gi|254781037|r 67 EIEKKLISGEIDCAVHSAKDMPTKLLKGLQIS--AYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALL--LRWR 142 (307) Q Consensus 67 ele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~--a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql--~~~~ 142 (307) ++-++|++|++|+|.-|.=.......++..+. +...-.....++++. .++++|| +|.+||+++.=....+ +.+. T Consensus 38 ~l~~al~~G~iDia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dL-~Gk~I~~~~~~~~~~~ll~~ll 115 (277) T d2nxoa1 38 KLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVGCDGPVMSCVIVS-QVPLDRL-DGARVALGSTSRTSVRLAQLLL 115 (277) T ss_dssp HHHHHHHTTSCSEEEEEHHHHHHTGGGEEEEEEEEEEESSCCSSEEEEE-SSCTTSC-SSSEEEEETTCSHHHHHHHHHH T ss_pred HHHHHHHCCCCCEEECCHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEC-CCCHHHH-CCCEEEECCCCHHHHHHHHHHH T ss_conf 9999997699999952999999855777167751222368716888645-6886774-7986987899839999999999 Q ss_pred -C----CCCCHHHCCCHHHHHHHHHCCCCCEEEEEHH Q ss_conf -3----7731033076799999863787655630145 Q gi|254781037|r 143 -S----DISVIDFRGKIETRLNKLNNNKAHAILLAYA 174 (307) Q Consensus 143 -p----~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~A 174 (307) . +..+.+...+ ..+..++.|+.++-.. T Consensus 116 ~~~~~~~~~~~~~~~~-----~a~~~~~~da~~~~~p 147 (277) T d2nxoa1 116 SERFGVQPDYYTCPPD-----LSLMMQEADAAVLIGD 147 (277) T ss_dssp HHTSCCCCEEEEECCC-----SSCC-----CCEEEHH T ss_pred HHCCCCCCEEECCCCC-----HHHHHCCCCCCCCCCC T ss_conf 8569997244268767-----8988156776620273 No 13 >d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]} Probab=73.76 E-value=2.6 Score=19.40 Aligned_cols=185 Identities=10% Similarity=0.088 Sum_probs=89.5 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403 Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307) Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307) .|+||+=.+ +|...-=.+...+.+. +|+++++++. |+ ..++.+.|.+|++|+|+=.. T Consensus 7 ~LrIg~~~~-~~~~~LP~~l~~f~~~--~P~v~v~l~~----~~----------------~~~l~~~l~~g~~D~ai~~~ 63 (237) T d1al3a_ 7 SLYVATTHT-QARYALPGVIKGFIER--YPRVSLHMHQ----GS----------------PTQIAEAVSKGNADFAIATE 63 (237) T ss_dssp EEEEEECHH-HHHHTSHHHHHHHHHH--CTEEEEEEEE----CC----------------HHHHHHHHHTTCCSEEEESS T ss_pred EEEEEEEHH-HHHHHHHHHHHHHHHH--CCCCEEEEEE----CC----------------HHHHHHHHHCCCCCEEEEEE T ss_conf 899996788-9999999999999998--8891899998----98----------------79999997433776899960 Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEEC-------CCCCCCCCCCCCEEEC---CCCCHHHHHHHHH--CCCCCHHHCC Q ss_conf 43211101221012223656831056652-------4324332456732204---7530288899842--3773103307 Q gi|254781037|r 85 KDMPTKLLKGLQISAYLPREDIRDVFISH-------TAQSLKDLALHSVIGT---SSLRRKALLLRWR--SDISVIDFRG 152 (307) Q Consensus 85 KDlP~~~~~~l~i~a~~~R~d~rD~lv~~-------~~~~l~~lp~~a~IGT---sS~RR~aql~~~~--p~l~~~~iRG 152 (307) |...++++...-+. .+..-+++++ ...++++|..-..|.. +..|+...-.... -..++.-.=. T Consensus 64 ---~~~~~~~l~~~~l~--~~~~~~v~~~~h~la~~~~~~~~dL~~~p~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 138 (237) T d1al3a_ 64 ---ALHLYDDLVMLPCY--HWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTAT 138 (237) T ss_dssp ---CCCTTSCEEEEEEE--EECEEEEECTTSTTTTTSCCCHHHHHTSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEES T ss_pred ---CCCCCCCCCCCCCC--CCEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECC T ss_conf ---33333333345554--3238999955731100234321021158830113445079999999997289874005349 Q ss_pred CHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC---CHHHHHHHHHCC Q ss_conf 67999998637876556301454542162112223368667358543207899985276---124556776239 Q gi|254781037|r 153 KIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN---PKAQELVKVINH 223 (307) Q Consensus 153 Nv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d---~~i~~il~~Ind 223 (307) +.++=++-+.+|..=+ ++....+..+.-. ... .++++...| +-.+++..|++. ..+..+++.+-. T Consensus 139 s~~~~~~~v~~g~Gi~-~~p~~~v~~~~~~-~l~-~~~~~~~~~---~~~~~l~~~~~~~l~~~~~~Fie~~~~ 206 (237) T d1al3a_ 139 DADVIKTYVRLGLGVG-VIASMAVDPVSDP-DLV-KLDANGIFS---HSTTKIGFRRSTFLRSYMYDFIQRFAP 206 (237) T ss_dssp SHHHHHHHHHHTSCEE-EEEGGGCCTTTCT-TSE-EEECBTTBC---CEEEEEEEETTCCCCHHHHHHHHHHCT T ss_pred CHHHHHHHHCCCCEEE-ECHHHHHHHHHCC-CEE-EEECCCCCC---CEEEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 9999999740798787-6569863266389-879-997878876---318999996988569999999999998 No 14 >d1ex2a_ c.51.4.2 (A:) Maf protein {Bacillus subtilis [TaxId: 1423]} Probab=60.67 E-value=1.7 Score=20.62 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=50.2 Q ss_pred CCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCE Q ss_conf 67322047530288899842377310330767999998637876556301454542162112223368667358543207 Q gi|254781037|r 123 LHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGA 202 (307) Q Consensus 123 ~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGa 202 (307) +.-+++++|+||+..|..+.-++.+.+ =+||-.+.+- ......+...|-.+-.. +....+ +.++=++=| T Consensus 3 ~~iILAS~SprR~~lL~~~gi~f~v~~--~~idE~~~~~--~~p~~~v~~lA~~KA~~----v~~~~~-~~~vi~aDt-- 71 (185) T d1ex2a_ 3 KPLILASQSPRRKELLDLLQLPYSIIV--SEVEEKLNRN--FSPEENVQWLAKQKAKA----VADLHP-HAIVIGADT-- 71 (185) T ss_dssp CCEEECCCCHHHHHHHHTTCCCCEECC--CCCCCCCCTT--SCHHHHHHHHHHHHHHH----HHHHCT-TSEEEEEEE-- T ss_pred CCEEEECCCHHHHHHHHHCCCCCEEEC--CCCCCCCCCC--CCHHHHHHHHHHHHHHH----HHHCCC-CCCEEEEEE-- T ss_conf 988997789999999986899989979--9988776779--99799999999988986----540300-101212421-- Q ss_pred EEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE Q ss_conf 8999852761245567762397888887889999987177648852899999999899 Q gi|254781037|r 203 ICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLY 260 (307) Q Consensus 203 IaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~ 260 (307) |... +. +++.+=.+.+ + =+.+|+.|.|.-|.-+.+.+-..++... T Consensus 72 --vv~~--~~---~i~~KP~~~~---~---A~~~L~~lsg~~h~v~T~v~v~~~~~~~ 116 (185) T d1ex2a_ 72 --MVCL--DG---ECLGKPQDQE---E---AASMLRRLSGRSHSVITAVSIQAENHSE 116 (185) T ss_dssp --EEEE--TT---EEECCCSSHH---H---HHHHHHHHTTSEEEEEEEEEEEETTEEE T ss_pred --ECCC--CC---CCCCCCHHHH---H---HHHHHHHHCCCCCCCEEEEEECCCCCCC T ss_conf --1024--65---4467521267---7---8999998515666230232210233330 No 15 >d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Probab=60.34 E-value=4.2 Score=18.03 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=27.7 Q ss_pred EEEEEECCCCCEEEEEEE-------ECCHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 999998699878999998-------43988899999999999997060563 Q gi|254781037|r 261 FYGIVLASDGKIFHEVSR-------NGNRCDAINIGRDAAQYIRFISNKNV 304 (307) Q Consensus 261 l~a~v~s~DG~~~i~~~~-------~g~~~~a~~LG~~la~~Ll~~g~k~i 304 (307) +.+++.+++....+...- .++.+.+..+|+.+|+.+++.|-+++ T Consensus 13 iyaQiIDd~~~~tl~s~St~~k~~k~~~~~~A~~vG~~la~~ak~~gI~~v 63 (86) T d2j01s1 13 IYAQIIDDEKGVTLVSASSLALKLKGNKTEVARQVGRALAEKALALGIKQV 63 (86) T ss_dssp BCEEEEETTTTEEEEEECSTTTCCCSCHHHHHHHHHHHHHHHHHHTSCCCC T ss_pred EEEEEEECCCCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 899999767986999982131110487789999999999999998799889 No 16 >d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]} Probab=54.10 E-value=6.1 Score=17.01 Aligned_cols=183 Identities=13% Similarity=0.056 Sum_probs=93.4 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403 Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307) Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307) +++||+=.| +|...--.+...+.+.| |++++++.... +.++.+.|.+|++|+|+... T Consensus 7 ~l~i~~~~~-~~~~~Lp~~l~~f~~~~--P~i~l~i~~~~--------------------~~~~~~~l~~g~~Di~i~~~ 63 (220) T d2fyia1 7 VLTIATTHT-QARYSLPEVIKAFRELF--PEVRLELIQGT--------------------PQEIATLLQNGEADIGIASE 63 (220) T ss_dssp EEEEEECHH-HHHHTHHHHHHHHHHHC--TTEEEEEEECC--------------------HHHHHHHHHHTSCSEEEESS T ss_pred EEEEEEEHH-HHHHHHHHHHHHHHHHC--CCCEEEEEECC--------------------CHHHHHHHHHHHHHHHHHCC T ss_conf 899998789-99999999999999988--89589999887--------------------08899998763433332001 Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEECCC-------CCCCCCCCCCEEE--CCCCCHHHHHHHH---HCCCCCHHHCC Q ss_conf 4321110122101222365683105665243-------2433245673220--4753028889984---23773103307 Q gi|254781037|r 85 KDMPTKLLKGLQISAYLPREDIRDVFISHTA-------QSLKDLALHSVIG--TSSLRRKALLLRW---RSDISVIDFRG 152 (307) Q Consensus 85 KDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~-------~~l~~lp~~a~IG--TsS~RR~aql~~~---~p~l~~~~iRG 152 (307) |...++++... +-..++--++++++. .++.+|..-..|. .++.-|......+ ....++.-.-. T Consensus 64 ---~~~~~~~~~~~--~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (220) T d2fyia1 64 ---RLSNDPQLVAF--PWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQ 138 (220) T ss_dssp ---SSTTCTTEEEE--EEEEECEEEEEETTCGGGTSSSCCHHHHTTSCEEEECTTSTTHHHHHHHHHHTTCCCCEEEEES T ss_pred ---CCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEC T ss_conf ---11222211123--3223332144256544344575202332001233222343158899887764046776147870 Q ss_pred CHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC---CHHHHHHHHH Q ss_conf 67999998637876556301454542162112223368667358543207899985276---1245567762 Q gi|254781037|r 153 KIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN---PKAQELVKVI 221 (307) Q Consensus 153 Nv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d---~~i~~il~~I 221 (307) +.++-+.-+.+|..=+ +++.-.+....-... . .++.. +...+..+++..|++. ..+..++.-+ T Consensus 139 ~~~~~~~~v~~g~gi~-ilp~~~~~~~~~~~l-~-~l~~~---~~~~~~~~~l~~~~~~~~~~~~~~Fi~~~ 204 (220) T d2fyia1 139 DSDVIKTYVALGLGIG-LVAEQSSGEQEEENL-I-RLDTR---HLFDANTVWLGLKRGQLQRNYVWRFLELC 204 (220) T ss_dssp SHHHHHHHHHHTSCEE-EEEGGGGSTTCCTTE-E-EECCT---TTSCCEEEEEEEETTCCBCHHHHHHHHHH T ss_pred CHHHHHHHHHHCCEEE-ECCHHHHHHHHCCCE-E-EEECC---CCCCCEEEEEEEECCCCCCHHHHHHHHHH T ss_conf 4788899876335688-676999998744887-9-98577---87774089999979886899999999999 No 17 >d2esna2 c.94.1.1 (A:92-303) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]} Probab=52.31 E-value=6.5 Score=16.83 Aligned_cols=146 Identities=14% Similarity=0.015 Sum_probs=76.4 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 98828997079888899999999999974089983389999973274115875567486226999999998709836997 Q gi|254781037|r 2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV 81 (307) Q Consensus 2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV 81 (307) ++++||||+-.+--.-.=...+ ..+.+.| |++++++... +. .++.+.|.+|++|+|+ T Consensus 6 ~~~~~rI~~~~~~~~~~lp~ll-~~f~~~~--P~v~i~l~~~----~~----------------~~~~~~l~~g~~Dl~i 62 (212) T d2esna2 6 SQRTFVFAATDYTAFALLPPLM-NRLQHSA--PGVRLRLVNA----ER----------------KLSVEALASGRIDFAL 62 (212) T ss_dssp CCCEEEEECCHHHHHHHHHHHH-HHHHHHS--TTCEEEEECC----SS----------------SCCHHHHHHTSSSEEE T ss_pred CCCEEEEEECHHHHHHHHHHHH-HHHHHHC--CCCEEEEEEC----CC----------------HHHHHHHHHHCCCCCC T ss_conf 7868999975799999999999-9999988--9968999954----74----------------8999999972345442 Q ss_pred ECC-CCCCC--C----CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCC--CEEECCCCCHHH---HHHHHHCCCCCHH Q ss_conf 403-43211--1----0122101222365683105665243243324567--322047530288---8998423773103 Q gi|254781037|r 82 HSA-KDMPT--K----LLKGLQISAYLPREDIRDVFISHTAQSLKDLALH--SVIGTSSLRRKA---LLLRWRSDISVID 149 (307) Q Consensus 82 HSl-KDlP~--~----~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~--a~IGTsS~RR~a---ql~~~~p~l~~~~ 149 (307) --. .+-+. . .-.......+..+..|.. ....++.++-.. ......+..|.. .+.......++.- T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (212) T d2esna2 63 GYDEEHERLPEGIQAHDWFADRYVVVARRDHPRL----AGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAV 138 (212) T ss_dssp ECCSTTCCCCTTEEEEEEEEECEEEEEESSCTTC----SSSCCHHHHHTSEEEEECTTCCSSCHHHHHHHHTTCCCEEEE T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHH----CCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC T ss_conf 2111344455322223320011100124554121----254579988408631136898741267788887175533343 Q ss_pred HCCCHHHHHHHHHCCCCCEEEEEHH Q ss_conf 3076799999863787655630145 Q gi|254781037|r 150 FRGKIETRLNKLNNNKAHAILLAYA 174 (307) Q Consensus 150 iRGNv~TRl~Kl~~g~~DaiilA~A 174 (307) .-.+..+-+.-+.+|.+-+++-... T Consensus 139 ~~~~~~~~~~~v~~g~gi~ilp~~~ 163 (212) T d2esna2 139 QLPTVLAALFLAGSTDFLLTAPRHA 163 (212) T ss_dssp EESCHHHHHHHHHTSSCEEEEEHHH T ss_pred CCCCHHHHHHHHHCCCEEEECCHHH T ss_conf 2134888899986599899915456 No 18 >d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Probab=51.52 E-value=6.7 Score=16.75 Aligned_cols=149 Identities=12% Similarity=0.111 Sum_probs=77.0 Q ss_pred CCCEEEEECCC--HHHHH--H------HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHH Q ss_conf 88289970798--88899--9------99999999974089983389999973274115875567486226999999998 Q gi|254781037|r 3 KKPFRIGTRCS--PLALA--H------AFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKL 72 (307) Q Consensus 3 ~~~i~IgtR~S--~LAl~--Q------a~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aL 72 (307) -++||||+... |.... + .-.+.+++.+.- +++++++.+. .. ....+| T Consensus 3 p~tl~v~~~~~~pP~~~~d~~G~~~G~~~dl~~~ia~~l---g~~~~~~~~~--~~------------------~~~~~l 59 (238) T d1lsta_ 3 PQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRM---QVKCTWVASD--FD------------------ALIPSL 59 (238) T ss_dssp CSEEEEEECSCBTTTBEECTTCCEESHHHHHHHHHHHHH---TCEEEEEECC--GG------------------GHHHHH T ss_pred CCEEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHH---CCCEEEEECH--HH------------------HHHHHH T ss_conf 987999988998880279999988872999999999995---9966995131--78------------------899998 Q ss_pred HCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCC---CCCCCCCCCEEECCCCC-HHHHHHHH--HCCCC Q ss_conf 70983699740343211101221012223656831056652432---43324567322047530-28889984--23773 Q gi|254781037|r 73 ISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQ---SLKDLALHSVIGTSSLR-RKALLLRW--RSDIS 146 (307) Q Consensus 73 l~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~---~l~~lp~~a~IGTsS~R-R~aql~~~--~p~l~ 146 (307) .+|++|+++-++-.-|... .......+-...+.-.++.++.. ++.+|. +.+||+.+-- -..++... .++.. T Consensus 60 ~~g~~d~~~~~~~~~~~r~--~~~~~s~p~~~~~~~l~~~~~~~~~~~~~dl~-~~~i~v~~g~~~~~~~~~~~~~~~~~ 136 (238) T d1lsta_ 60 KAKKIDAIISSLSITDKRQ--QEIAFSDKLYAADSRLIAAKGSPIQPTLESLK-GKHVGVLQGSTQEAYANDNWRTKGVD 136 (238) T ss_dssp HTTSCSEECSSCBCCHHHH--HHCEECSCSBCCCEEEEEETTCCCCSSHHHHT-TCEEEEETTSHHHHHHHHHTGGGTCE T ss_pred HHCCCCEEECCCCHHHHHH--HHCCCCCCCCCCCCEEEEEECCCCCCCCCCCC-CCEEEEEECCHHHHHHHHHHHCCCCC T ss_conf 7312221303342123355--54036787411574379983376667730148-98899982651899999863056422 Q ss_pred CHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHH Q ss_conf 10330767999998637876556301454542 Q gi|254781037|r 147 VIDFRGKIETRLNKLNNNKAHAILLAYAGIKR 178 (307) Q Consensus 147 ~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~R 178 (307) ..... +.+.-+..+..|++|+++.....+.. T Consensus 137 ~~~~~-~~~~~~~~l~~gr~D~~~~~~~~~~~ 167 (238) T d1lsta_ 137 VVAYA-NQDLIYSDLTAGRLDAALQDEVAASE 167 (238) T ss_dssp EEEES-SHHHHHHHHHTTSCSEEEEEHHHHHH T ss_pred EEEEC-CHHHHHHHHHHHCCCEEEECHHHHHH T ss_conf 26517-98999999863045389942899999 No 19 >d1sw5a_ c.94.1.1 (A:) Osmoprotection protein ProX {Archaeoglobus fulgidus [TaxId: 2234]} Probab=51.31 E-value=6.7 Score=16.73 Aligned_cols=56 Identities=18% Similarity=0.023 Sum_probs=41.2 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 289970798888999999999999740899833899999732741158755674862269999999987098369974 Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307) Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307) +|+||+-+..=+.+.++.+.+.|++. ++.+|++.. +|+ +--+-.+|-+|+||+.+. T Consensus 2 ~v~Ig~~~wte~~v~a~i~~~~Le~~----Gy~ve~~~~--------------~~~----~~~~~~al~~GdiDv~~e 57 (270) T d1sw5a_ 2 RVVIGSKPFNEQYILANMIAILLEEN----GYKAEVKEG--------------LGG----TLVNYEALKRNDIQLYVE 57 (270) T ss_dssp CEEECCCSSHHHHHHHHHHHHHHHHT----TCCEEECTT--------------CCS----HHHHHHHHHHTSSSEEEE T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHC----CCCEEEEEC--------------CCC----CHHHHHHHHCCCCCEEEH T ss_conf 38990688838999999999999986----996489855--------------786----189999998699768721 No 20 >d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]} Probab=46.51 E-value=8 Score=16.25 Aligned_cols=171 Identities=11% Similarity=0.109 Sum_probs=85.2 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 28997079888899999999999974089983389999973274115875567486226999999998709836997403 Q gi|254781037|r 5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA 84 (307) Q Consensus 5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl 84 (307) .++||+-.|...-+-...+.+ +.+. +|++++++... .+.++.++|.+|++|+++-.. T Consensus 3 ~lrIg~~~~~~~~~Lp~~l~~-f~~~--~P~v~l~i~~~--------------------~~~~l~~~l~~g~~D~~~~~~ 59 (205) T d1ixca2 3 ELSVAYFGTPIYRSLPLLLRA-FLTS--TPTATVSLTHM--------------------TKDEQVEGLLAGTIHVGFSRF 59 (205) T ss_dssp EEEEEECSGGGGTHHHHHHHH-HHHH--CTTEEEEEEEC--------------------CHHHHHHHHHHTSCSEEEESC T ss_pred EEEEEEEHHHHHHHHHHHHHH-HHHH--CCCCEEEEEEC--------------------CCCCCHHHHHHHHCCCCCCCC T ss_conf 899998968899999999999-9998--87968999988--------------------774420110222203221235 Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEECC-------CCCCCCCCCCCEE----ECCCC-CHHHHHHHH--HCCCCCHHH Q ss_conf 432111012210122236568310566524-------3243324567322----04753-028889984--237731033 Q gi|254781037|r 85 KDMPTKLLKGLQISAYLPREDIRDVFISHT-------AQSLKDLALHSVI----GTSSL-RRKALLLRW--RSDISVIDF 150 (307) Q Consensus 85 KDlP~~~~~~l~i~a~~~R~d~rD~lv~~~-------~~~l~~lp~~a~I----GTsS~-RR~aql~~~--~p~l~~~~i 150 (307) ..-+. ++.... ...++.-+++... .....++.....+ .+++. |+...-... ....++.-. T Consensus 60 ~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (205) T d1ixca2 60 FPRHP----GIEIVN--IAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARV 133 (205) T ss_dssp CCCCT----TEEEEE--EEEEEEEEEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEE T ss_pred CCCCC----HHEEEE--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC T ss_conf 44320----000000--121222223222222222222222200257641001366641244433333210222222222 Q ss_pred CCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC Q ss_conf 0767999998637876556301454542162112223368667358543207899985276 Q gi|254781037|r 151 RGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN 211 (307) Q Consensus 151 RGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307) -.+.++-+.-+.+|..-+++- . .+.+...... ..++.+...| .--+++.+|+++ T Consensus 134 ~~~~~~~~~~v~~g~gi~~lp-~-~~~~~~~~~l--~~~~l~~~~~---~~~~~l~~~~~~ 187 (205) T d1ixca2 134 VEDATAALALTMAGAASSIVP-A-SVAAIRWPDI--AFARIVGTRV---KVPISCIFRKEK 187 (205) T ss_dssp CSSHHHHHHHHHTTSCBEEEE-H-HHHTSCCTTE--EEEEECCTTC---EEEEEEEEESSS T ss_pred CCCHHHHHHHCCCCCEEEECC-H-HHHHCCCCCE--EEEECCCCCC---EEEEEEEEECCC T ss_conf 220256665314464599851-8-8870136988--9998889984---469999997999 No 21 >d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Probab=45.29 E-value=8.3 Score=16.14 Aligned_cols=153 Identities=11% Similarity=0.168 Sum_probs=78.8 Q ss_pred CCCCEEEEECCCH-HHHH---HH-------HHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHH Q ss_conf 9882899707988-8899---99-------99999999740899833899999732741158755674862269999999 Q gi|254781037|r 2 EKKPFRIGTRCSP-LALA---HA-------FETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEK 70 (307) Q Consensus 2 ~~~~i~IgtR~S~-LAl~---Qa-------~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~ 70 (307) +.++||||+..++ .... +. -.+.+++.+.. +++++++... + -.++-+ T Consensus 2 ~a~~lrVg~~~~pP~~~~~~~~~g~~~G~~~dl~~~ia~~~---g~~~~~v~~~---------~----------~~~~~~ 59 (226) T d1ii5a_ 2 SAMALKVGVVGNPPFVFYGEGKNAAFTGISLDVWRAVAESQ---KWNSEYVRQN---------S----------ISAGIT 59 (226) T ss_dssp CSCCEEEEECCCTTTCEEC-----CEESHHHHHHHHHHHHH---TCCEEEEECS---------C----------HHHHHH T ss_pred CCCCEEEEEECCCCCEEEECCCCCCEEEHHHHHHHHHHHHH---CCCEEEEECC---------C----------HHHHHH T ss_conf 97887999937899767654999948888999999999984---9975999758---------9----------899889 Q ss_pred HHHCCCCEEEEECCCCCCCCC-CCCCEEEEECCCCCCCEEEEECCC----CCCCCCCCCCEEECCCCCHHHHHHHHHCCC Q ss_conf 987098369974034321110-122101222365683105665243----243324567322047530288899842377 Q gi|254781037|r 71 KLISGEIDCAVHSAKDMPTKL-LKGLQISAYLPREDIRDVFISHTA----QSLKDLALHSVIGTSSLRRKALLLRWRSDI 145 (307) Q Consensus 71 aLl~g~iDiAVHSlKDlP~~~-~~~l~i~a~~~R~d~rD~lv~~~~----~~l~~lp~~a~IGTsS~RR~aql~~~~p~l 145 (307) +|.+|++|+++-.+---|... ...+...- +--....-.++.++. .++.+|. +..||...---..+. ...|.. T Consensus 60 ~l~~G~~D~~~~~~~~t~~r~~~~~~~fs~-p~~~~~~~~~~~~~~~~~~~~~~dl~-~~~i~~~~g~~~~~~-~~~~~~ 136 (226) T d1ii5a_ 60 AVAEGELDILIGPISVTPERAAIEGITFTQ-PYFSSGIGLLIPGTATPLFRSVGDLK-NKEVAVVRDTTAVDW-ANFYQA 136 (226) T ss_dssp HHHTTSCSEEEEEEECCHHHHTSTTEEECC-CCEEEEEEEEEEGGGTTTCSSGGGGT-TCEEEEETTSHHHHH-HHHTTC T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHCCCCCC-CCCCCCCCEEEEECCCCCCHHHHHHH-HHCCCCCCCCHHHHC-CCCCCC T ss_conf 986597530111132112223343134456-54225740478730333210133210-001333368603210-232222 Q ss_pred CCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCC Q ss_conf 31033076799999863787655630145454216 Q gi|254781037|r 146 SVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLK 180 (307) Q Consensus 146 ~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~ 180 (307) +++.+- +.+.-++.|.+|+.|+.+.-..-+..+- T Consensus 137 ~i~~~~-~~~~~~~~l~~g~~d~~~~~~~~~~~~~ 170 (226) T d1ii5a_ 137 DVRETN-NLTAAITLLQKKQVEAVMFDRPALIYYT 170 (226) T ss_dssp EEEEES-SHHHHHHHHHTTSCSEEEEEHHHHHHHH T ss_pred EEECCC-HHHHHHHHHHCCCEEEEECCCHHHHHHH T ss_conf 033034-3999999986798556732536677887 No 22 >d2amha1 c.51.4.2 (A:7-207) Maf homologue Tb11.01.5890 {Trypanosoma brucei [TaxId: 5691]} Probab=44.80 E-value=3.2 Score=18.84 Aligned_cols=110 Identities=20% Similarity=0.236 Sum_probs=50.6 Q ss_pred CCEEECCCCCHHHHHHHHH--CCCCCHHHCCCHHHHHHHHHC-CCCCEEEEEH----HHHHHCCCCCCCCCCCCHHHCCC Q ss_conf 7322047530288899842--377310330767999998637-8765563014----54542162112223368667358 Q gi|254781037|r 124 HSVIGTSSLRRKALLLRWR--SDISVIDFRGKIETRLNKLNN-NKAHAILLAY----AGIKRLKKEKVIKEILNIEDFPP 196 (307) Q Consensus 124 ~a~IGTsS~RR~aql~~~~--p~l~~~~iRGNv~TRl~Kl~~-g~~DaiilA~----Agl~RL~l~~~i~~~l~~~~~~P 196 (307) .-+++++|+||+..|+.+. +.++|.-+-=|+|-..-|-.. .+| +.-+|. +...++.. . .+ T Consensus 5 ~lILAS~S~rR~~lL~~~g~~~~~~f~v~~~~idE~~~~~~~p~~~-~~~lA~~Ka~~v~~~~~~--~----------~~ 71 (201) T d2amha1 5 TMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFEL-TESIARAKMKAVLEKARQ--H----------SP 71 (201) T ss_dssp EEEECCCCHHHHHHHHHHHTTTCSEEEECCCCCCGGGCCCSSHHHH-HHHHHHHHHHHHHHHHHT--C------------ T ss_pred CEEEECCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHH--H----------CC T ss_conf 1999059999999998669767877799699989898765797899-999999877765423333--1----------01 Q ss_pred CCCCCEEEEEEE---CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE Q ss_conf 543207899985---27612455677623978888878899999871776488528999999 Q gi|254781037|r 197 SPGQGAICIETH---VNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCK 255 (307) Q Consensus 197 A~gQGaIaIe~r---~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~ 255 (307) ...+.++.|-|- ..+. +++.+=.+ ..+ -+.+|+.|.|.-|.-+.+.|-+. T Consensus 72 ~~~~~~ivi~aDtvv~~~g---~i~~KP~~---~~~---A~~~L~~lsg~~h~v~T~v~v~~ 124 (201) T d2amha1 72 PISGPAIALTFDQVVVKGD---EVREKPLS---TEQ---CRSFIASYSGGGVRTVATYALCV 124 (201) T ss_dssp ----CEEEEEEEEEEEETT---EEECSCSS---HHH---HHHHHHHHTTSEEEEEEEEEEEE T ss_pred CCCCCEEEEEECCCCCCCC---CCCCCCCC---CHH---HHHHHHHHCCCCCEEEEEEEEEE T ss_conf 3467629996133101133---21267200---004---67889986478638999999996 No 23 >d1r9la_ c.94.1.1 (A:) Glycine betaine-binding periplasmic protein ProX {Escherichia coli [TaxId: 562]} Probab=41.89 E-value=9.4 Score=15.80 Aligned_cols=58 Identities=9% Similarity=-0.060 Sum_probs=42.1 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740 Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307) Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307) .+|+||+-.-.=..++++.+.+.|++. |++++.+. .+ + +..+-.+|.+|+||+.+-. T Consensus 8 ~ti~~~~~~wte~~i~~ei~~q~Le~~----Gy~V~~~~--------------~~-~----~~~~~~al~~GdiDv~~Ey 64 (309) T d1r9la_ 8 ITVNPVQSTITEETFQTLLVSRALEKL----GYTVNKPS--------------EV-D----YNVGYTSLASGDATFTAVN 64 (309) T ss_dssp CEECEEECSCGGGHHHHHHHHHHHHHT----TCEECCCE--------------EC-C----HHHHHHHHHHTSSCEEEEE T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHC----CCCEEEEC--------------CC-C----HHHHHHHHHCCCCEEEEEE T ss_conf 779983279637999999999999986----99646523--------------78-7----3999999986998499833 Q ss_pred C Q ss_conf 3 Q gi|254781037|r 84 A 84 (307) Q Consensus 84 l 84 (307) + T Consensus 65 w 65 (309) T d1r9la_ 65 W 65 (309) T ss_dssp E T ss_pred E T ss_conf 1 No 24 >d1zbma1 c.94.1.1 (A:2-261) Hypothetical protein AF1704 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=34.72 E-value=12 Score=15.08 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=56.1 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCC---EEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHH--HH Q ss_conf 9999999870983699740343211101221---012223656831056652432433245673220475302888--99 Q gi|254781037|r 65 TEEIEKKLISGEIDCAVHSAKDMPTKLLKGL---QISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKAL--LL 139 (307) Q Consensus 65 tkele~aLl~g~iDiAVHSlKDlP~~~~~~l---~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aq--l~ 139 (307) ..+|.+.+.+|++|++.=|.=-.|..-.+-. .+++.-+...| .|+++... +| .|.+|+.++..+.+. ++ T Consensus 37 i~~LN~~l~~g~lDv~~iSs~~y~~~~~~y~lLp~i~~~g~~~~~--~l~~k~p~---~l-~~~~ial~~~stTs~~Llk 110 (260) T d1zbma1 37 IETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAGASVGDGYGP--VVVAKSEI---SL-DGKRIAVPGRYTTANLLLK 110 (260) T ss_dssp HHHHHHHGGGTCCSEEEEEHHHHTTSTTTEEECSSCCEEESSCCC--EEEESSCC---CC-TTCEEEESCTTSHHHHHHH T ss_pred HHHHHHHHHCCCCCEEEHHHHHHHHHHCCEEECCCEEECCCCCCE--EEEECCCC---CC-CCCCCCCCHHHHHHHHHHH T ss_conf 999999997699988723699999504658673653673798775--99977887---76-6675057817689999999 Q ss_pred HHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEE Q ss_conf 84237731033076799999863787655630 Q gi|254781037|r 140 RWRSDISVIDFRGKIETRLNKLNNNKAHAILL 171 (307) Q Consensus 140 ~~~p~l~~~~iRGNv~TRl~Kl~~g~~Daiil 171 (307) .+.++...+++ +-++-...+..|++||.++ T Consensus 111 ill~~~~~~~~--~f~~i~~~~~~~~~da~Ll 140 (260) T d1zbma1 111 LAVEDFEPVEM--PFDRIIQAVLDEEVDAGLL 140 (260) T ss_dssp HHCSSCEEEEC--CGGGHHHHHHTTSSSEEEE T ss_pred HHHHHCCEECC--CCCCCCCHHHCCCCCCCCC T ss_conf 99875442057--8200553555388872131 No 25 >d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]} Probab=32.24 E-value=13 Score=14.82 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=84.0 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 82899707988889999999999997408998338999997327411587556748622699999999870983699740 Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS 83 (307) Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS 83 (307) =+||||+=.|--..+=...+ ..+.+. +|++++++..- .+.++.+.+.++++|+++.. T Consensus 5 G~lrig~~~~~~~~~lp~~l-~~f~~~--~P~v~l~i~~~--------------------~~~~~~~~l~~~~~d~~~~~ 61 (212) T d1i6aa_ 5 GPLHIGLIPTVGPYLLPHII-PMLHQT--FPKLEMYLHEA--------------------QTHQLLAQLDSGKLDAVILA 61 (212) T ss_dssp EEEEEEECTTTHHHHHHHHH-HHHHHH--CTTEEEEEEEC--------------------CHHHHHHHHHHTSCSEEEEE T ss_pred EEEEEEEEHHHHHHHHHHHH-HHHHHH--CCCCEEEEEEC--------------------CCCCCCCCCCCCCHHHHHEE T ss_conf 89999837789999999999-999998--88968999988--------------------77553222322100000000 Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCEEEEEC-------CCCCCCCCCCCCEEECC--CCCHHHHHHHH---HCCCCCHHHC Q ss_conf 343211101221012223656831056652-------43243324567322047--53028889984---2377310330 Q gi|254781037|r 84 AKDMPTKLLKGLQISAYLPREDIRDVFISH-------TAQSLKDLALHSVIGTS--SLRRKALLLRW---RSDISVIDFR 151 (307) Q Consensus 84 lKDlP~~~~~~l~i~a~~~R~d~rD~lv~~-------~~~~l~~lp~~a~IGTs--S~RR~aql~~~---~p~l~~~~iR 151 (307) .-.- .+++....... ++.=+.+.+ ...+++++..-..|... +.-|....... .....+.-.- T Consensus 62 ~~~~----~~~~~~~~l~~--~~~~~~~~~~hpla~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (212) T d1i6aa_ 62 LVKE----SEAFIEVPLFD--EPMLLAIYEDHPWANREAVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRA 135 (212) T ss_dssp CCGG----GTTSEEEEEEE--EEEEEEEETTSGGGGCSCEEGGGGTTSEEECCTTTTCSSCTTSSCSSCTTSEEECTTTT T ss_pred CCCC----CCCCCCEECCC--CCEEEEEECCCHHHCCCCCCCHHHCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCEEEC T ss_conf 1112----23212011122--22578750377211599633022011158981698763112444420133222100112 Q ss_pred CCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC Q ss_conf 767999998637876556301454542162112223368667358543207899985276 Q gi|254781037|r 152 GKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN 211 (307) Q Consensus 152 GNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307) .+.++-+.-..+|..-+++ ....+.+......+. .++... |. -+--+++..|++. T Consensus 136 ~~~~~~~~~v~~g~Gia~l-p~~~~~~~~~~~~l~-~~~~~~--~~-~~~~~~l~~~~~~ 190 (212) T d1i6aa_ 136 TSLETLRNMVAAGSGITLL-PALAVPPERKRDGVV-YLPAIK--PE-PRRTIGLVYRPGS 190 (212) T ss_dssp SCHHHHHHHHHTTSCBEEE-EGGGSCSSSEETTEE-EECEES--SC-CEEEEEEEECTTC T ss_pred CCHHHHHHHHHCCCCCCCC-HHHHHHHHHCCCEEE-EEECCC--CC-CEEEEEEEEECCC T ss_conf 7789999999759964221-088887642354489-986688--98-5269999997919 No 26 >d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Probab=29.46 E-value=15 Score=14.53 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=31.0 Q ss_pred EEEEEEECCCCCEEEEEEE------------ECCHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 9999998699878999998------------43988899999999999997060563 Q gi|254781037|r 260 YFYGIVLASDGKIFHEVSR------------NGNRCDAINIGRDAAQYIRFISNKNV 304 (307) Q Consensus 260 ~l~a~v~s~DG~~~i~~~~------------~g~~~~a~~LG~~la~~Ll~~g~k~i 304 (307) ++.+++.++++...+..-- .++.+-+..+|+.+|+..++.|-.++ T Consensus 32 hiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~ra~~~gI~~v 88 (113) T d2gycm1 32 HIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDV 88 (113) T ss_dssp CEEEEEEETTTTEEEEEEETTGGGGTSCCSCSSSHHHHHHHHHHHHHHHHHHTCCCC T ss_pred CEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 179999984699178874103566654327775328999999999999998799999 No 27 >d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Probab=26.78 E-value=3.6 Score=18.52 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=26.6 Q ss_pred EEEEEEECCCCCEEEEEE------EECCHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 999999869987899999------843988899999999999997060563 Q gi|254781037|r 260 YFYGIVLASDGKIFHEVS------RNGNRCDAINIGRDAAQYIRFISNKNV 304 (307) Q Consensus 260 ~l~a~v~s~DG~~~i~~~------~~g~~~~a~~LG~~la~~Ll~~g~k~i 304 (307) ++.+++.++++...+... ..++.+.+..+|+.+|+.+++.|-+++ T Consensus 30 hiyaQiIDd~~~~tl~s~St~~~~~~~~~~~a~~vG~~ia~~a~~kgi~~v 80 (104) T d2zjrl1 30 HIYAQIIDDSRGQTLAAASSAALKSGNKTDTAAAVGKALAAAAAEKGIKQV 80 (104) T ss_dssp CCCCCEEETTTTEECCCCCSCSCCTTCSSSSHHHHHHHHHHHHHTTCCCCC T ss_pred EEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 068999965788678762244322453156899999999999998799899 No 28 >d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=20.70 E-value=14 Score=14.62 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=21.5 Q ss_pred CEEEEECCCCCCCCCCCCCEEEE----ECCCCCCCEEEEECC Q ss_conf 36997403432111012210122----236568310566524 Q gi|254781037|r 77 IDCAVHSAKDMPTKLLKGLQISA----YLPREDIRDVFISHT 114 (307) Q Consensus 77 iDiAVHSlKDlP~~~~~~l~i~a----~~~R~d~rD~lv~~~ 114 (307) .-..|.||-|+|. |+-++| -.++.||.++.+.+. T Consensus 35 ~GVvV~sm~D~PL----GFGvaakst~e~r~~dp~~ivv~hQ 72 (76) T d1sqwa1 35 QGVVVYSMADIPL----GFGVAAKSTQDCRKVDPMAIVVFHQ 72 (76) T ss_dssp CEEEEEETTCCEE----EEEEESSCHHHHHHSCTTSEEEEEE T ss_pred CEEEEEECCCCCC----CEEEECCCHHHHHHCCCCCEEEEEE T ss_conf 6199994789752----3054104889995089853799982 Done!