HHsearch alignment for GI: 254781038 and conserved domain: COG1924
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism].
Probab=98.78 E-value=9.1e-06 Score=59.88 Aligned_cols=239 Identities=21% Similarity=0.285 Sum_probs=153.6
Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224536
Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363)
Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363)
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d---~~~I~~~~~~~t~--------g~p~-~--------~~~l~~~le~l~~~~~~I~~ 192 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMED---GKEILYGFYVSTK--------GRPI-A--------EKALKEALEELGEKLEEILG 192 (396)
T ss_pred CCCEEEEEECCCCCEEEEEEEC---CCEEEEEEEECCC--------CCHH-H--------HHHHHHHHHHCCCCHHEEEE
T ss_conf 2867997623874135999837---9757888997578--------8766-8--------99999999980647121222
Q ss_pred EEECCCCCHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECC-CCCCEEC
Q ss_conf 87406643012567799999998-875148643330367765301322567998439997068747999837-5643000
Q gi|254781038|r 84 IAVTAGPGLMGGLIVGLMTAKAI-SYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRD-VAHYDRL 161 (363)
Q Consensus 84 Iavt~gPG~~~~L~vG~~~Ak~l-a~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~-~~~~~il 161 (363)
T Consensus 193 ~~~T---GY----------GR~~v~~~~~aD-~~~~Ei~ah~kgA~~f~p~~d--tIiDIGGQD~K~i~i~dG~v~df~m 256 (396)
T COG1924 193 LGVT---GY----------GRNLVGAALGAD-KVVVEISAHAKGARYFAPDVD--TVIDIGGQDSKVIKLEDGKVDDFTM 256 (396)
T ss_pred EEEE---CC----------CHHHHHHHHCCC-CCEEEEEHHHHHHHHHCCCCC--EEEEECCCCEEEEEEECCEEEEEEE
T ss_conf 4322---12----------087763330577-432543036778987288986--7998568503689971881422576
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 223363002388889885288761035566655405733345861110688754-2210245899999985112012106
Q gi|254781038|r 162 GTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCD-FSFSGLKTSVQKTICAFDVLEKQDI 240 (363)
Q Consensus 162 g~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~d-FSFSGLkTav~~~i~~~~~~~~~~~ 240 (363)
T Consensus 257 N~~CAAGtGrFLE~~A~~Lgv~v~---E~~~~A~~~~~~------v~i~S~-CaVF~eSevi~~~~---------~G~~~ 317 (396)
T COG1924 257 NDKCAAGTGRFLEVIARRLGVDVE---ELGKLALKATPP------VKINSR-CAVFAESEVISALA---------EGASP 317 (396)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCHH---HHHHHHHCCCCC------CCCCCE-EEEEEHHHHHHHHH---------CCCCH
T ss_conf 461024665389999998299789---999898558887------453772-07874178899998---------69988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH
Q ss_conf 889999999999999999999999987621445523-654133458799999999999868988996287
Q gi|254781038|r 241 ADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAV-LVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA 309 (363)
Q Consensus 241 ~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~-lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~ 309 (363)
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~---------~i~~~iv~~GGva~n~av~~ale~~l---g~~V~vP~~ 375 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRV---------DIEEPIVLQGGVALNKAVVRALEDLL---GRKVIVPPY 375 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC---------CCCCCEEEECCCHHHHHHHHHHHHHH---CCEEECCCC
T ss_conf 99999999999999999985116---------88888799884025799999999985---881534895