HHsearch alignment for GI: 254781038 and conserved domain: COG1940

>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].
Probab=96.76  E-value=0.059  Score=33.58  Aligned_cols=278  Identities=19%  Similarity=0.222  Sum_probs=143.6

Q ss_pred             CCCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             98888468875026022077887338888418988731133462121871455999999996999999999983898224
Q gi|254781038|r    1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD   80 (363)
Q Consensus         1 m~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~   80 (363)
T Consensus         1 ~~~~~~~~lgidIggt~i~~~l~---d~~g~~l~~~~~~~~~~~~~----------~~~~~~i~~~i~~~~~~~~---~~   64 (314)
T COG1940           1 LNPEAMTVLGIDIGGTKIKVALV---DLDGEILLRERIPTPTPDPE----------EAILEAILALVAELLKQAQ---GR   64 (314)
T ss_pred             CCCCCEEEEEEEECCCEEEEEEE---ECCCCEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHHCC---CC
T ss_conf             99876299999988978999999---37997898899877888845----------6799999999999987527---67


Q ss_pred             CCEEEECC-CCCHHH-----------HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-CCC-CCEEEEEECCC
Q ss_conf             53687406-643012-----------56779999999887514864333036776530132256-799-84399970687
Q gi|254781038|r   81 MDSIAVTA-GPGLMG-----------GLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDD-IAF-PYLVLLVSGGH  146 (363)
Q Consensus        81 id~Iavt~-gPG~~~-----------~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~-~~~-PfL~LlvSGGh  146 (363)
T Consensus        65 ~~~iGIgi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aAlaE~~~g~~~~~~~~~~i~~gtGI  144 (314)
T COG1940          65 VAIIGIGIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGAGRGIDDVVYITLGTGI  144 (314)
T ss_pred             CCEEEEEEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEEECCCE
T ss_conf             75699999764612687367425766544467799999998899879925199999999872877788749999989974


Q ss_pred             EEEEEECCCC-------CCEECCCCCCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf             4799983756-------430002233630023888898852887-61035566655405733345861110688754221
Q gi|254781038|r  147 TQILLVRDVA-------HYDRLGTTIDDALGECFDKIAKSLGLP-YPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSF  218 (363)
Q Consensus       147 T~l~~~~~~~-------~~~ilg~T~Dda~Ge~~DK~ar~Lgl~-yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSF  218 (363)
T Consensus       145 G~giv~~g~l~~G~~g~aGe-~Gh~~v~~~g~--c~cG~~GclE~~as~~al~~~~~~----~--~~~~~~-----~--~  208 (314)
T COG1940         145 GGGIIVNGKLLRGANGNAGE-IGHMVVDPDGE--CGCGRRGCLETYASGRAILRRAAE----A--LESEAG-----E--L  208 (314)
T ss_pred             EEEEEECCEECCCCCCCCCC-CCCCEECCCCC--CCCCCCCCHHHHCCHHHHHHHHHH----H--CCCCCC-----C--C
T ss_conf             89999899750589986760-58713168886--668887707663077999986432----0--144445-----6--7


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEH-HHHHH-HHHHHHHHHH
Q ss_conf             024589999998511201210688999999999999999999999998762144552365413-34587-9999999999
Q gi|254781038|r  219 SGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSG-GVASN-HFIRASLIDL  296 (363)
Q Consensus       219 SGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~G-GVaaN-~~LR~~l~~~  296 (363)
T Consensus       209 ~-----~~~i~~~a~~gd-----~~a~~~~~~~~~~la~~ianl~~~~------~P~~IvigG~~~~~~~~~~~~~l~~~  272 (314)
T COG1940         209 T-----AKDIFELAAAGD-----PLAKEVIERAADYLARGLANLINLL------DPEVIVIGGGGVSALGDLLLPRLRKL  272 (314)
T ss_pred             C-----HHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             8-----999999987589-----8899999999999999999999973------99749997964566678899999999


Q ss_pred             HHHCCCE-EEECCHH--HC-CCHHHHHHHHHHHH
Q ss_conf             9868988-9962878--87-72589999999999
Q gi|254781038|r  297 CVLHGFR-FVAPPAR--LC-TDNAVMIAWAALER  326 (363)
Q Consensus       297 ~~~~~~~-~~~P~~~--~c-tDNAaMIA~ag~~~  326 (363)
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~a~~~ga~~~~~  306 (314)
T COG1940         273 LAKYLFPPVLRPRIVEAALGGNDAGLIGAALLAL  306 (314)
T ss_pred             HHHHCCCCCCCCCEEEHHCCCCCHHHHHHHHHHH
T ss_conf             8764032102342010001564332564898875