HHsearch alignment for GI: 254781038 and conserved domain: COG1940
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].
Probab=96.76 E-value=0.059 Score=33.58 Aligned_cols=278 Identities=19% Similarity=0.222 Sum_probs=143.6
Q ss_pred CCCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98888468875026022077887338888418988731133462121871455999999996999999999983898224
Q gi|254781038|r 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363)
Q Consensus 1 m~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363)
T Consensus 1 ~~~~~~~~lgidIggt~i~~~l~---d~~g~~l~~~~~~~~~~~~~----------~~~~~~i~~~i~~~~~~~~---~~ 64 (314)
T COG1940 1 LNPEAMTVLGIDIGGTKIKVALV---DLDGEILLRERIPTPTPDPE----------EAILEAILALVAELLKQAQ---GR 64 (314)
T ss_pred CCCCCEEEEEEEECCCEEEEEEE---ECCCCEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHHCC---CC
T ss_conf 99876299999988978999999---37997898899877888845----------6799999999999987527---67
Q ss_pred CCEEEECC-CCCHHH-----------HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-CCC-CCEEEEEECCC
Q ss_conf 53687406-643012-----------56779999999887514864333036776530132256-799-84399970687
Q gi|254781038|r 81 MDSIAVTA-GPGLMG-----------GLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDD-IAF-PYLVLLVSGGH 146 (363)
Q Consensus 81 id~Iavt~-gPG~~~-----------~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~-~~~-PfL~LlvSGGh 146 (363)
T Consensus 65 ~~~iGIgi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aAlaE~~~g~~~~~~~~~~i~~gtGI 144 (314)
T COG1940 65 VAIIGIGIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGAGRGIDDVVYITLGTGI 144 (314)
T ss_pred CCEEEEEEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEEECCCE
T ss_conf 75699999764612687367425766544467799999998899879925199999999872877788749999989974
Q ss_pred EEEEEECCCC-------CCEECCCCCCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf 4799983756-------430002233630023888898852887-61035566655405733345861110688754221
Q gi|254781038|r 147 TQILLVRDVA-------HYDRLGTTIDDALGECFDKIAKSLGLP-YPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSF 218 (363)
Q Consensus 147 T~l~~~~~~~-------~~~ilg~T~Dda~Ge~~DK~ar~Lgl~-yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSF 218 (363)
T Consensus 145 G~giv~~g~l~~G~~g~aGe-~Gh~~v~~~g~--c~cG~~GclE~~as~~al~~~~~~----~--~~~~~~-----~--~ 208 (314)
T COG1940 145 GGGIIVNGKLLRGANGNAGE-IGHMVVDPDGE--CGCGRRGCLETYASGRAILRRAAE----A--LESEAG-----E--L 208 (314)
T ss_pred EEEEEECCEECCCCCCCCCC-CCCCEECCCCC--CCCCCCCCHHHHCCHHHHHHHHHH----H--CCCCCC-----C--C
T ss_conf 89999899750589986760-58713168886--668887707663077999986432----0--144445-----6--7
Q ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEH-HHHHH-HHHHHHHHHH
Q ss_conf 024589999998511201210688999999999999999999999998762144552365413-34587-9999999999
Q gi|254781038|r 219 SGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSG-GVASN-HFIRASLIDL 296 (363)
Q Consensus 219 SGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~G-GVaaN-~~LR~~l~~~ 296 (363)
T Consensus 209 ~-----~~~i~~~a~~gd-----~~a~~~~~~~~~~la~~ianl~~~~------~P~~IvigG~~~~~~~~~~~~~l~~~ 272 (314)
T COG1940 209 T-----AKDIFELAAAGD-----PLAKEVIERAADYLARGLANLINLL------DPEVIVIGGGGVSALGDLLLPRLRKL 272 (314)
T ss_pred C-----HHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 8-----999999987589-----8899999999999999999999973------99749997964566678899999999
Q ss_pred HHHCCCE-EEECCHH--HC-CCHHHHHHHHHHHH
Q ss_conf 9868988-9962878--87-72589999999999
Q gi|254781038|r 297 CVLHGFR-FVAPPAR--LC-TDNAVMIAWAALER 326 (363)
Q Consensus 297 ~~~~~~~-~~~P~~~--~c-tDNAaMIA~ag~~~ 326 (363)
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~a~~~ga~~~~~ 306 (314)
T COG1940 273 LAKYLFPPVLRPRIVEAALGGNDAGLIGAALLAL 306 (314)
T ss_pred HHHHCCCCCCCCCEEEHHCCCCCHHHHHHHHHHH
T ss_conf 8764032102342010001564332564898875