>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

Probab=98.82 E-value=1.3e-06 Score=65.79 Aligned_cols=243 Identities=20% Similarity=0.299 Sum_probs=150.7 Q ss_pred CCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 84688750260220778873388884189887311334621218714559999999969999999999838982245368 Q gi|254781038|r 5 KKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSI 84 (363) Q Consensus 5 ~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~I 84 (363) T Consensus 143 ~g~t~gidsgstttk~v~m~d----neiig~-------------gw~~t---~~v~~sa~~~~~~al~~ag~~~~di~ai 202 (404) T TIGR03286 143 EGLTLGIDSGSTTTKAVVMED----NEVIGT-------------GWVPT---TKVIESAEEAVERALEEAGVSLEDVEAI 202 (404) T ss_pred HCEEEEECCCCCEEEEEEEEC----CEEEEC-------------CCCCC---HHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 184465427985145899725----704405-------------76555---4678889999999999739757765321 Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCC--CCCEECC Q ss_conf 74066430125677999999988751486433303677653013225679984399970687479998375--6430002 Q gi|254781038|r 85 AVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDV--AHYDRLG 162 (363) Q Consensus 85 avt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~--~~~~ilg 162 (363) T Consensus 203 gtT-GyGr---~~----ig~~~~adl~~eE~tv~skgA~yla~----~~~g~aTVIDIGGQDsKvI~l~dGiv~dF~-MN 269 (404) T TIGR03286 203 GTT-GYGR---FT----IGEHFGADLIQEELTVNSKGAVYLAD----KQEGPATVIDIGGMDNKAISVWDGIPDNFT-MG 269 (404) T ss_pred CCC-CCCH---HH----HHHHCCCCCEEEEEEEECCCCEECCC----CCCCCCEEEEECCCCCEEEEECCCCEEECC-CC T ss_conf 466-6215---46----65643752004778885041011055----567896699976863169997179454031-17 Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 23363002388889885288761035566655405733345861110688754-22102458999999851120121068 Q gi|254781038|r 163 TTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCD-FSFSGLKTSVQKTICAFDVLEKQDIA 241 (363) Q Consensus 163 ~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~d-FSFSGLkTav~~~i~~~~~~~~~~~~ 241 (363) T Consensus 270 dkCAAGTGRFLE~mA~rLgI~Ie---Elg~LAlks~~~pV----~I-s-S~CTVFAES----EvIslla~-----G~~~E 331 (404) T TIGR03286 270 GICAGASGRFLEMTAKRLGVDIT---ELGKLALKGMPEKV----RM-N-SYCIVFGIQ----DLVTALAE-----GASPE 331 (404) T ss_pred CCCCCCCCHHHHHHHHHCCCCHH---HHHHHHHHCCCCCC----CC-C-CEEEEEEEH----HHHHHHHC-----CCCHH T ss_conf 96666476599999987299899---99999982799877----53-5-764898518----99999977-----99989 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH Q ss_conf 89999999999999999999999987621445523654133458799999999999868988996287 Q gi|254781038|r 242 DICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA 309 (363) Q Consensus 242 diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~ 309 (363) T Consensus 332 DIaAGlc~SVA~rvl~~l~k~--------v~i~~~VvftGGVA~N~GIv~ALEe~L---G~~IiVPp~ 388 (404) T TIGR03286 332 DVAAAACHSVAEQVYEQQLQE--------IDVREPVILVGGTSLIEGLVKALGDLL---GIEVVVPEY 388 (404) T ss_pred HHHHHHHHHHHHHHHHHHHCC--------CCCCCCEEEECCCCCCHHHHHHHHHHH---CCCEECCCC T ss_conf 999999999999999998443--------688999799896205489999999985---993771897

HHsearch alignment for GI: 254781038 and conserved domain: TIGR03286