HHsearch alignment for GI: 254781038 and conserved domain: pfam02543
>pfam02543 CmcH_NodU Carbamoyltransferase. This family consists of NodU from Rhizobium and CmcH from Nocardia lactamdurans. NodU a Rhizobium nodulation protein involved in the synthesis of nodulation factors has 6-O-carbamoyltransferase-like activity. CmcH is involved in cephamycin (antibiotic) biosynthesis and has 3-hydroxymethylcephem carbamoyltransferase activity, EC:2.1.3.7 catalysing the reaction: Carbamoyl phosphate + 3-hydroxymethylceph-3-EM-4-carboxylate <= phosphate + 3-carbamoyloxymethylcephem.
Probab=98.39 E-value=3.8e-05 Score=55.64 Aligned_cols=194 Identities=23% Similarity=0.234 Sum_probs=107.6
Q ss_pred CCCCCCCCCCCCEEEEEECC----CEEEEEECCCCCCEECCCC----CCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q ss_conf 01322567998439997068----7479998375643000223----3630023888898852887-6103556665540
Q gi|254781038|r 126 TARLTDDIAFPYLVLLVSGG----HTQILLVRDVAHYDRLGTT----IDDALGECFDKIAKSLGLP-YPGGVEIEKAALM 196 (363)
Q Consensus 126 ~~~l~~~~~~PfL~LlvSGG----hT~l~~~~~~~~~~ilg~T----~Dda~Ge~~DK~ar~Lgl~-yPgGp~ie~~A~~ 196 (363)
T Consensus 2 Safy~S~F~~a~liltiDG~Gd~~s~si~~~~~-~~i~~~~~~~~p~~~~SlG~~Y~~~T~~lGf~~~~~EgKvMGLA~Y 80 (360)
T pfam02543 2 SAYYMSPFAEAELVLCIDGGGDILSRLLSIGKG-GARFPVAVSSFPDSGYSLGLFYLSFTERLGFKPMSDEGKVMALAAY 80 (360)
T ss_pred CCCCCCCCCCCEEEEEEECCCCCHHEEEEEEEC-CEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
T ss_conf 613579998623899996998783049999709-8489988871798657458999999998399777605889869860
Q ss_pred CCCCCCCCC-CH-HCC-CCCCCCCCCHHH----HHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 573334586-11-106-887542210245----89999998----51120121068899999999999999999999999
Q gi|254781038|r 197 GDGKRFKFP-CP-LVQ-GTLCDFSFSGLK----TSVQKTIC----AFDVLEKQDIADICASFQVTVVRILQARLKQGFLL 265 (363)
Q Consensus 197 g~~~~~~~P-~p-~~~-~~~~dFSFSGLk----Tav~~~i~----~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~ 265 (363)
T Consensus 81 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diAas~Q~~~E~~~~~~~~~~~~~ 160 (360)
T pfam02543 81 GSVDARIVALIDKLYELKLAGDSAYRAYINNLGPSLLKTHDVFRKSMLSLLKQREEDIAASAQRTLERLVEELLRHVYEE 160 (360)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89807899999998545625772000346754400555411101242110014256899999999999999999999997
Q ss_pred HHHHCCCCC-CEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 876214455-23654133458799999999999868988996287887725899999999999849
Q gi|254781038|r 266 FRKAFPHKQ-AVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERMEAG 330 (363)
Q Consensus 266 ~~~~~~~~~-~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~~~g 330 (363)
T Consensus 161 ~------~~~~nlclaGGvaLN~~aN~~i~~~~~~~--~ifV~Pa--~~D~G~aiGAA~~~~~~~~ 216 (360)
T pfam02543 161 F------GIDRNLCIAGGVALNVKWNSKLRRRGLFD--DVWVPPA--MNDSGSALGAALLAKVQLG 216 (360)
T ss_pred H------CCCCEEEEECHHHHHHHHHHHHHHCCCCC--CCEECCC--CCCHHHHHHHHHHHHHHHC
T ss_conf 4------88761897070999999999888617776--6031789--8851567999999999854