HHsearch alignment of GI: 254781038 and MMDB domain: 3cqy_A_146-325
>3cqy_A (A:146-325) Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1}
Probab=96.41 E-value=0.029 Score=35.23 Aligned_cols=158 Identities=18% Similarity=0.219 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHH-HHHHHHHC-CCCCCHHHHH
Q ss_conf 643330367765301322567998439997068747999837564300022336300238-88898852-8876103556
Q gi|254781038|r 113 PFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGEC-FDKIAKSL-GLPYPGGVEI 190 (363)
Q Consensus 113 Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~-~DK~ar~L-gl~yPgGp~i 190 (363)
||+|+-|.. +.....-+ -+++==||=+.|-+.....+ .++ --|.-+|++ +|-..+.+ |.+|=-+-.+
T Consensus 2 PLvP~~~~~-------lf~~~~~~-r~~lNIGGIaNiT~lp~~~~-~v~--afDtGPGN~liD~~~~~~~~~~yD~dG~~ 70 (180)
T 3cqy_A 2 PLVPAFHQQ-------TFAQVGKK-RVILNIGGIANITYLPGNSE-EVL--GFDTGPGNTLIDAWVQQVKNESYDKNGAW 70 (180)
T ss_dssp CCHHHHHHH-------HHCCTTCC-EEEEEESSEEEEEEECSSSS-CCE--EEEEEESSHHHHHHHHHHHCCSSCGGGHH
T ss_pred CCHHHHHHH-------HHHHCCCC-EEEEEECCCCEEEECCCCCC-CCE--EECCCCHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 823776899-------97422343-58851024332444135886-434--66247167799999999838740003521
Q ss_pred --------HHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --------665540573334586111068875422102458999999851120121068899999999999999999999
Q gi|254781038|r 191 --------EKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQG 262 (363)
Q Consensus 191 --------e~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a 262 (363)
+.+.+.-+...|..|.|...++. +|+..-+. +.+. ...+...+|+.+.+-+-.++.+.+-+++
T Consensus 71 A~~G~v~~~ll~~ll~~pff~~~pPKStgrE-~F~~~~~~----~~l~---~~~~ls~~D~~aTlt~~TA~sI~~~~~~- 141 (180)
T 3cqy_A 71 AASGKTDPQLLAQLLSHPYFSLAYPKSTGRE-LFNQAWLE----QQLS---AFNQLNEEDIQSTLLDLTCHSIAQDILK- 141 (180)
T ss_dssp HHHSCCCHHHHHHHHTCGGGGSCSSCCCCSS-SSSHHHHH----HHTT---TCTTSCHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHH----HHHH---CCCCCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 0578626899999987442025776542455-54454324----4320---1245782025567888999998755554-
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 999876214455236541334587999999999998
Q gi|254781038|r 263 FLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCV 298 (363)
Q Consensus 263 ~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~ 298 (363)
+ .....++|+||=+-|.+|.++|++.+.
T Consensus 142 ---~-----~~~~~v~v~GGGa~N~~Lm~~L~~~l~ 169 (180)
T 3cqy_A 142 ---L-----AQEGELFVCGGGAFNAELXQRLAALLP 169 (180)
T ss_dssp ---H-----CSSEEEEEESGGGGCHHHHHHHHHHCT
T ss_pred ---H-----CCCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf ---1-----356723896687568999999997678