HHsearch alignment of GI: 254781038 and MMDB domain: 3cqy_A_146-325

>3cqy_A (A:146-325) Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1}
Probab=96.41  E-value=0.029  Score=35.23  Aligned_cols=158  Identities=18%  Similarity=0.219  Sum_probs=94.3

Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHH-HHHHHHHC-CCCCCHHHHH
Q ss_conf             643330367765301322567998439997068747999837564300022336300238-88898852-8876103556
Q gi|254781038|r  113 PFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGEC-FDKIAKSL-GLPYPGGVEI  190 (363)
Q Consensus       113 Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~-~DK~ar~L-gl~yPgGp~i  190 (363)
                      ||+|+-|..       +.....-+ -+++==||=+.|-+.....+ .++  --|.-+|++ +|-..+.+ |.+|=-+-.+
T Consensus         2 PLvP~~~~~-------lf~~~~~~-r~~lNIGGIaNiT~lp~~~~-~v~--afDtGPGN~liD~~~~~~~~~~yD~dG~~   70 (180)
T 3cqy_A            2 PLVPAFHQQ-------TFAQVGKK-RVILNIGGIANITYLPGNSE-EVL--GFDTGPGNTLIDAWVQQVKNESYDKNGAW   70 (180)
T ss_dssp             CCHHHHHHH-------HHCCTTCC-EEEEEESSEEEEEEECSSSS-CCE--EEEEEESSHHHHHHHHHHHCCSSCGGGHH
T ss_pred             CCHHHHHHH-------HHHHCCCC-EEEEEECCCCEEEECCCCCC-CCE--EECCCCHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             823776899-------97422343-58851024332444135886-434--66247167799999999838740003521


Q ss_pred             --------HHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --------665540573334586111068875422102458999999851120121068899999999999999999999
Q gi|254781038|r  191 --------EKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQG  262 (363)
Q Consensus       191 --------e~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a  262 (363)
                              +.+.+.-+...|..|.|...++. +|+..-+.    +.+.   ...+...+|+.+.+-+-.++.+.+-+++ 
T Consensus        71 A~~G~v~~~ll~~ll~~pff~~~pPKStgrE-~F~~~~~~----~~l~---~~~~ls~~D~~aTlt~~TA~sI~~~~~~-  141 (180)
T 3cqy_A           71 AASGKTDPQLLAQLLSHPYFSLAYPKSTGRE-LFNQAWLE----QQLS---AFNQLNEEDIQSTLLDLTCHSIAQDILK-  141 (180)
T ss_dssp             HHHSCCCHHHHHHHHTCGGGGSCSSCCCCSS-SSSHHHHH----HHTT---TCTTSCHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHH----HHHH---CCCCCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             0578626899999987442025776542455-54454324----4320---1245782025567888999998755554-


Q ss_pred             HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHH
Q ss_conf             999876214455236541334587999999999998
Q gi|254781038|r  263 FLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCV  298 (363)
Q Consensus       263 ~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~  298 (363)
                         +     .....++|+||=+-|.+|.++|++.+.
T Consensus       142 ---~-----~~~~~v~v~GGGa~N~~Lm~~L~~~l~  169 (180)
T 3cqy_A          142 ---L-----AQEGELFVCGGGAFNAELXQRLAALLP  169 (180)
T ss_dssp             ---H-----CSSEEEEEESGGGGCHHHHHHHHHHCT
T ss_pred             ---H-----CCCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf             ---1-----356723896687568999999997678