HHsearch results for GI: 254781038 and protein with PDBid: 3cqy_A
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1}
Probab=98.43 E-value=0.00016 Score=49.73 Aligned_cols=294 Identities=18% Similarity=0.219 Sum_probs=163.3
Q ss_pred CCCCCCEEEEE--ECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCC------CCCCC-CH---HHHHHHHHHHHHHHH
Q ss_conf 98888468875--02602207788733888841898873113346212------18714-55---999999996999999
Q gi|254781038|r 1 MSKIKKTVIGI--ETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGH------YGGVV-PE---VAARAHVDVLDILIK 68 (363)
Q Consensus 1 m~~~~~~ILgI--ETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~------~GGv~-P~---~A~~~H~~~l~~li~ 68 (363)
|++ ++.+|+ =||+|---+|+++.+....+++......+...-.+ ..+-. +. ...++-.+.....++
T Consensus 2 m~k--~~~IGlMSGTS~DGiD~alv~~dg~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~a~~i~ 79 (370)
T 3cqy_A 2 MNK--AYYIGLMSGTSMDGVDAVLVDFAGEQPQLIGTHTETIPTHLLKGLQRLCLPGTDEINRLGRLDRSVGKLFALAVN 79 (370)
T ss_dssp TTC--CEEEEEEECTTCCCEEEEEEECSSSSCEEEEEEEECCCHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--CEEEEEECCHHHHHHEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 988--889999665315536048999808826998650533899999999985026987599999999999999999999
Q ss_pred HHHHHCCCCCCCCCEEEEC-----CCCCH--HHHHHHHHHHHHHHHHHHCCCC------------------CCCHHHHHH
Q ss_conf 9999838982245368740-----66430--1256779999999887514864------------------333036776
Q gi|254781038|r 69 QTLLRANMQISDMDSIAVT-----AGPGL--MGGLIVGLMTAKAISYVSHKPF------------------YAINHLEGH 123 (363)
Q Consensus 69 ~~l~~a~~~~~~id~Iavt-----~gPG~--~~~L~vG~~~Ak~la~~~~~Pl------------------i~VnH~~aH 123 (363)
+.+++.+++..+||+|+.- --|.. .-.+.+| -+..||...++|+ +|+=|..
T Consensus 80 ~~i~~~~~~~~~Id~IG~HGQTi~H~P~~~~~~T~QiG--~~~~IA~~tgi~VV~DFR~~Dia~GGqGAPLvP~~h~~-- 155 (370)
T 3cqy_A 80 NLLAKTKIAKDEIIAIGSHGQTVRHMPNLEVGFTLQIG--DPNTIATETGIDVIADFRRKDIALGGQGAPLVPAFHQQ-- 155 (370)
T ss_dssp HHHHHHCCCGGGEEEEEEEEEEEEEETTSSSCEEEEES--CHHHHHHHHSSCEEECCHHHHHHTTSCCCCCHHHHHHH--
T ss_pred HHHHHHCCCCCCEEEECCCCCCEEEECCCCCCEEEECC--CHHHHHHCCCCCEEEEECCCHHHCCCCCCCCCHHHHHH--
T ss_conf 99764114544532774799875887467787068818--87787400588667540133766499999952166899--
Q ss_pred HHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHH-HHHHHHHC-CCCCCH-------HHHHHH-H
Q ss_conf 5301322567998439997068747999837564300022336300238-88898852-887610-------355666-5
Q gi|254781038|r 124 ILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGEC-FDKIAKSL-GLPYPG-------GVEIEK-A 193 (363)
Q Consensus 124 ~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~-~DK~ar~L-gl~yPg-------Gp~ie~-~ 193 (363)
+.....-+ .+++==||=+.+-+..... -+++ .-|.-+|++ +|...|.. |.+|-- |...+. +
T Consensus 156 -----Lf~~~~~~-~~~lNIGGIaNiT~~~~~~-~~~~--afD~GPgN~LiD~~~~~~~~~~~D~~G~~A~~G~v~~~ll 226 (370)
T 3cqy_A 156 -----TFAQVGKK-RVILNIGGIANITYLPGNS-EEVL--GFDTGPGNTLIDAWVQQVKNESYDKNGAWAASGKTDPQLL 226 (370)
T ss_dssp -----HHCCTTCC-EEEEEESSEEEEEEECSSS-SCCE--EEEEEESSHHHHHHHHHHHCCSSCGGGHHHHHSCCCHHHH
T ss_pred -----HHHCCCCC-EEEEEEECCCEEEECCCCC-CCCE--EECCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHH
T ss_conf -----86312411-3887530423676324688-7534--6524751368999999975988385723205885888999
Q ss_pred HHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 54057333458611106887542210245899999985112012106889999999999999999999999987621445
Q gi|254781038|r 194 ALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHK 273 (363)
Q Consensus 194 A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~ 273 (363)
.+.-+...|..+.|...++. +|++.-+.- .+.+ ...-...|+.+.+-+..++.+.+-+. .+ . +
T Consensus 227 ~~ll~~~~f~~~~PKS~~re-~f~~~~~~~----~~~~---~~~l~~~D~~aTl~~~ta~sI~~~~~----~~----~-~ 289 (370)
T 3cqy_A 227 AQLLSHPYFSLAYPKSTGRE-LFNQAWLEQ----QLSA---FNQLNEEDIQSTLLDLTCHSIAQDIL----KL----A-Q 289 (370)
T ss_dssp HHHHTCGGGGSCSSCCCCSS-SSSHHHHHH----HTTT---CTTSCHHHHHHHHHHHHHHHHHHHHH----HH----C-S
T ss_pred HHHHHHHHCCCCCCCCHHHH-CCCCCCHHH----HHHH---CCCCCHHHHHHHHHHHHHHHHHHHHH----HH----C-C
T ss_conf 99986431025675520331-155320155----6542---02478067899999999999999999----72----3-6
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCC----HHHHHHHHHHHHHHC
Q ss_conf 52365413345879999999999986898899628788772----589999999999984
Q gi|254781038|r 274 QAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTD----NAVMIAWAALERMEA 329 (363)
Q Consensus 274 ~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctD----NAaMIA~ag~~~~~~ 329 (363)
...++|+||=+-|.+|.++|++.+. +.++ .+.-++-.| -|.+.||.|+++++.
T Consensus 290 ~~~~iv~GGG~~N~~L~~~l~~~l~--~~~v-~~~~~~gi~~d~~EA~~FA~La~~~~~~ 346 (370)
T 3cqy_A 290 EGELFVCGGGAFNAELMQRLAALLP--GYRI-DTTSALGVDPKWAEGIAFAWLAMRYQLG 346 (370)
T ss_dssp SEEEEEESGGGGCHHHHHHHHHHCT--TEEE-EEGGGGTCCTTTHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCC--CCEE-EEHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 8846998999768999999997678--9868-5289939984699999999999999869