HHsearch results for GI: 254781038 and protein with PDBid: 3cqy_A

>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1}
Probab=98.43  E-value=0.00016  Score=49.73  Aligned_cols=294  Identities=18%  Similarity=0.219  Sum_probs=163.3

Q ss_pred             CCCCCCEEEEE--ECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCC------CCCCC-CH---HHHHHHHHHHHHHHH
Q ss_conf             98888468875--02602207788733888841898873113346212------18714-55---999999996999999
Q gi|254781038|r    1 MSKIKKTVIGI--ETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGH------YGGVV-PE---VAARAHVDVLDILIK   68 (363)
Q Consensus         1 m~~~~~~ILgI--ETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~------~GGv~-P~---~A~~~H~~~l~~li~   68 (363)
                      |++  ++.+|+  =||+|---+|+++.+....+++......+...-.+      ..+-. +.   ...++-.+.....++
T Consensus         2 m~k--~~~IGlMSGTS~DGiD~alv~~dg~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~a~~i~   79 (370)
T 3cqy_A            2 MNK--AYYIGLMSGTSMDGVDAVLVDFAGEQPQLIGTHTETIPTHLLKGLQRLCLPGTDEINRLGRLDRSVGKLFALAVN   79 (370)
T ss_dssp             TTC--CEEEEEEECTTCCCEEEEEEECSSSSCEEEEEEEECCCHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC--CEEEEEECCHHHHHHEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             988--889999665315536048999808826998650533899999999985026987599999999999999999999


Q ss_pred             HHHHHCCCCCCCCCEEEEC-----CCCCH--HHHHHHHHHHHHHHHHHHCCCC------------------CCCHHHHHH
Q ss_conf             9999838982245368740-----66430--1256779999999887514864------------------333036776
Q gi|254781038|r   69 QTLLRANMQISDMDSIAVT-----AGPGL--MGGLIVGLMTAKAISYVSHKPF------------------YAINHLEGH  123 (363)
Q Consensus        69 ~~l~~a~~~~~~id~Iavt-----~gPG~--~~~L~vG~~~Ak~la~~~~~Pl------------------i~VnH~~aH  123 (363)
                      +.+++.+++..+||+|+.-     --|..  .-.+.+|  -+..||...++|+                  +|+=|..  
T Consensus        80 ~~i~~~~~~~~~Id~IG~HGQTi~H~P~~~~~~T~QiG--~~~~IA~~tgi~VV~DFR~~Dia~GGqGAPLvP~~h~~--  155 (370)
T 3cqy_A           80 NLLAKTKIAKDEIIAIGSHGQTVRHMPNLEVGFTLQIG--DPNTIATETGIDVIADFRRKDIALGGQGAPLVPAFHQQ--  155 (370)
T ss_dssp             HHHHHHCCCGGGEEEEEEEEEEEEEETTSSSCEEEEES--CHHHHHHHHSSCEEECCHHHHHHTTSCCCCCHHHHHHH--
T ss_pred             HHHHHHCCCCCCEEEECCCCCCEEEECCCCCCEEEECC--CHHHHHHCCCCCEEEEECCCHHHCCCCCCCCCHHHHHH--
T ss_conf             99764114544532774799875887467787068818--87787400588667540133766499999952166899--


Q ss_pred             HHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHH-HHHHHHHC-CCCCCH-------HHHHHH-H
Q ss_conf             5301322567998439997068747999837564300022336300238-88898852-887610-------355666-5
Q gi|254781038|r  124 ILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGEC-FDKIAKSL-GLPYPG-------GVEIEK-A  193 (363)
Q Consensus       124 ~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~-~DK~ar~L-gl~yPg-------Gp~ie~-~  193 (363)
                           +.....-+ .+++==||=+.+-+..... -+++  .-|.-+|++ +|...|.. |.+|--       |...+. +
T Consensus       156 -----Lf~~~~~~-~~~lNIGGIaNiT~~~~~~-~~~~--afD~GPgN~LiD~~~~~~~~~~~D~~G~~A~~G~v~~~ll  226 (370)
T 3cqy_A          156 -----TFAQVGKK-RVILNIGGIANITYLPGNS-EEVL--GFDTGPGNTLIDAWVQQVKNESYDKNGAWAASGKTDPQLL  226 (370)
T ss_dssp             -----HHCCTTCC-EEEEEESSEEEEEEECSSS-SCCE--EEEEEESSHHHHHHHHHHHCCSSCGGGHHHHHSCCCHHHH
T ss_pred             -----HHHCCCCC-EEEEEEECCCEEEECCCCC-CCCE--EECCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHH
T ss_conf             -----86312411-3887530423676324688-7534--6524751368999999975988385723205885888999


Q ss_pred             HHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             54057333458611106887542210245899999985112012106889999999999999999999999987621445
Q gi|254781038|r  194 ALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHK  273 (363)
Q Consensus       194 A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~  273 (363)
                      .+.-+...|..+.|...++. +|++.-+.-    .+.+   ...-...|+.+.+-+..++.+.+-+.    .+    . +
T Consensus       227 ~~ll~~~~f~~~~PKS~~re-~f~~~~~~~----~~~~---~~~l~~~D~~aTl~~~ta~sI~~~~~----~~----~-~  289 (370)
T 3cqy_A          227 AQLLSHPYFSLAYPKSTGRE-LFNQAWLEQ----QLSA---FNQLNEEDIQSTLLDLTCHSIAQDIL----KL----A-Q  289 (370)
T ss_dssp             HHHHTCGGGGSCSSCCCCSS-SSSHHHHHH----HTTT---CTTSCHHHHHHHHHHHHHHHHHHHHH----HH----C-S
T ss_pred             HHHHHHHHCCCCCCCCHHHH-CCCCCCHHH----HHHH---CCCCCHHHHHHHHHHHHHHHHHHHHH----HH----C-C
T ss_conf             99986431025675520331-155320155----6542---02478067899999999999999999----72----3-6


Q ss_pred             CCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCC----HHHHHHHHHHHHHHC
Q ss_conf             52365413345879999999999986898899628788772----589999999999984
Q gi|254781038|r  274 QAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTD----NAVMIAWAALERMEA  329 (363)
Q Consensus       274 ~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctD----NAaMIA~ag~~~~~~  329 (363)
                      ...++|+||=+-|.+|.++|++.+.  +.++ .+.-++-.|    -|.+.||.|+++++.
T Consensus       290 ~~~~iv~GGG~~N~~L~~~l~~~l~--~~~v-~~~~~~gi~~d~~EA~~FA~La~~~~~~  346 (370)
T 3cqy_A          290 EGELFVCGGGAFNAELMQRLAALLP--GYRI-DTTSALGVDPKWAEGIAFAWLAMRYQLG  346 (370)
T ss_dssp             SEEEEEESGGGGCHHHHHHHHHHCT--TEEE-EEGGGGTCCTTTHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHCC--CCEE-EEHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             8846998999768999999997678--9868-5289939984699999999999999869