HHsearch results for GI: 254781038 and protein with PDBid: 3ifr_A
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170}
Probab=97.96 E-value=0.0012 Score=43.75 Aligned_cols=293 Identities=15% Similarity=0.079 Sum_probs=145.7
Q ss_pred CCCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98888468875026022077887338888418988731133462121871455999999996999999999983898224
Q gi|254781038|r 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363)
Q Consensus 1 m~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363)
|.+ .++|||||-..-.+-++++ |.++++++...........+-|.+-. -...-.+.+..++++++++++....+
T Consensus 3 ~~~-~kyvlgIDiGTts~Ka~l~---d~~g~il~~~~~~~~~~~~~~g~~eq--d~~~~~~~~~~~l~~l~~~~~~~~~~ 76 (508)
T 3ifr_A 3 LAQ-GRQVIGLDIGTTSTIAILV---RLPDTVVAVASRPTTLSSPHPGWAEE--DPAQWWDNARAVLAELKTTAGESDWR 76 (508)
T ss_dssp -----CEEEEEEECSSEEEEEEE---ETTTEEEEEEEEECCCBCSSTTCCEE--CHHHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred CCC-CCEEEEEECCCCCEEEEEE---ECCCCEEEEEEEECCCCCCCCCCEEE--CHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 778-9889999872234277899---58999999999856712599981899--99999999999999999963888677
Q ss_pred CCEEEEC-CCCCHHHH------H---------HHHHHH--------HHHHHHHHCCCCCCCHHHHHHH------------
Q ss_conf 5368740-66430125------6---------779999--------9998875148643330367765------------
Q gi|254781038|r 81 MDSIAVT-AGPGLMGG------L---------IVGLMT--------AKAISYVSHKPFYAINHLEGHI------------ 124 (363)
Q Consensus 81 id~Iavt-~gPG~~~~------L---------~vG~~~--------Ak~la~~~~~Pli~VnH~~aH~------------ 124 (363)
|.+|++| .+.+++.. | |..-.. .+.+....+.|+.+-+.. .++
T Consensus 77 i~aI~is~~~~~~v~~D~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tg~~~~~~~~~-~kl~wl~~~~p~~~~ 155 (508)
T 3ifr_A 77 PGGICVTGMLPAVVLLDDRGAVLRPSIQQSDGRCGDEVAELRAEVDSEAFLARTGNGVTQQLVT-AKLRWIERHEPAVFG 155 (508)
T ss_dssp EEEEEEEECSSCBEEECTTSCBCSCEECTTCCCCHHHHHHHHHHSCHHHHHHHHSSCSSTTSHH-HHHHHHHHHCHHHHH
T ss_pred EEEEEEECCCCCEEEECCCCCCCCCCEECCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHH-HHHHHHHCCCCHHHC
T ss_conf 0399997734788998899989520013056651768999873123999999858987757699-999998634813320
Q ss_pred ---------------HCCCCC-----------------------------------------------------------
Q ss_conf ---------------301322-----------------------------------------------------------
Q gi|254781038|r 125 ---------------LTARLT----------------------------------------------------------- 130 (363)
Q Consensus 125 ---------------~~~~l~----------------------------------------------------------- 130 (363)
+++...
T Consensus 156 ~~~~~l~~~dyi~~~Ltg~~~~d~s~As~tgl~d~~~~~w~~~ll~~~gi~~~~lp~~~~~g~~~G~l~~~~a~~~gl~~ 235 (508)
T 3ifr_A 156 AIATVCGSYDYINMLLTGERVVDRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVLGAVTAEAAALTGLPT 235 (508)
T ss_dssp TCSEEECHHHHHHHHHHCCCCEEHHHHHHHTCEETTTTEECHHHHHTTTSCGGGSCCEECTTSEEEECCHHHHHHHCCCT
T ss_pred CCEEECCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 43331245433000126740564554434566665555226788876086400278657643314554588897518998
Q ss_pred -----------------CCCCCCCEEEEEECCCEEEEEECCCC-----CCEECCC---------CCCCCHHHHHHHHHHH
Q ss_conf -----------------56799843999706874799983756-----4300022---------3363002388889885
Q gi|254781038|r 131 -----------------DDIAFPYLVLLVSGGHTQILLVRDVA-----HYDRLGT---------TIDDALGECFDKIAKS 179 (363)
Q Consensus 131 -----------------~~~~~PfL~LlvSGGhT~l~~~~~~~-----~~~ilg~---------T~Dda~Ge~~DK~ar~ 179 (363)
....-|= .+.+|.|+|..+.+.... ....... ..--..|.+++-+.+.
T Consensus 236 ~~~V~~g~~D~~aa~~g~g~~~~g-~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~ 314 (508)
T 3ifr_A 236 GLPVYGGAADHIASALAAGITRPG-DVLLKFGGAGDIIVASATAKSDPRLYLDYHLVPGLYAPNGCMAATGSALNWLAKL 314 (508)
T ss_dssp TCEEECCEEHHHHHHHHTTCCSTT-EEEEEESSSEEEEECBSCCCCBTTBBCCBCSSTTCBCCEEEESSSHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHCCCCCCC-CEEEEECCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 966876355056677603654468-5578407613788645886433454033100477544012110241799999998
Q ss_pred CCCCCCH--HHHHHHHHHHCCCC---CCCCCCHHCCCC-------CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 2887610--35566655405733---345861110688-------75422102458999999851120121068899999
Q gi|254781038|r 180 LGLPYPG--GVEIEKAALMGDGK---RFKFPCPLVQGT-------LCDFSFSGLKTSVQKTICAFDVLEKQDIADICASF 247 (363)
Q Consensus 180 Lgl~yPg--Gp~ie~~A~~g~~~---~~~~P~p~~~~~-------~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasf 247 (363)
++..... -..+++++....+. -+-+| ...+. ...=+|.|+... .+..++..++
T Consensus 315 ~~~~~~~~~~~~l~~~a~~~~~~~~gl~~~P--~~~G~r~P~~~~~~~g~~~gl~~~-------------~~~~~l~rai 379 (508)
T 3ifr_A 315 LAPEAGEAAHAQLDALAAEVPAGADGLVCLP--YFLGEKTPIHDPFASGTFTGLSLS-------------HTRGHLWRAL 379 (508)
T ss_dssp HSTTCTTHHHHHHHHHHHTSCTTGGGCEEEC--CTTCCC----CCCCCCEEESCCTT-------------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEECC--CCCCCCCCCCCCCCCEEEECCCCC-------------CHHHHHHHHH
T ss_conf 4354444566678999850888888604546--445778998786787577568640-------------0078999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCHHHHHHHHHH
Q ss_conf 99999999999999999987621445523654133458799999999999868988996287-887725899999999
Q gi|254781038|r 248 QVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDNAVMIAWAAL 324 (363)
Q Consensus 248 Q~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDNAaMIA~ag~ 324 (363)
.+.++-.+...+ +.+++. ...++.++++||-+.|..+++.+.++. |.++..+.. +-..=-|||+|..+.
T Consensus 380 ~Egia~~~~~~~----~~~~~~-g~~~~~i~~~GGgs~s~~~~Qi~Adv~---g~pV~~~~~~e~~a~GaA~lA~~~~ 449 (508)
T 3ifr_A 380 LEAVALAFRHHV----AVLDDI-GHAPQRFFASDGGTRSRVWMGIMADVL---QRPVQLLANPLGSAVGAAWVAAIGG 449 (508)
T ss_dssp HHHHHHHHHHHH----HHHHHH-TCCCCEEEEESGGGGCHHHHHHHHHHH---TSCEEEEECCSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH----HHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHH---CCEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 998999879999----999971-999777999893301799999999988---9848975876279999999999974