HHSEARCH alignment of GI: 254781038 and SCOP domain: d1bupa2

Alignment
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
Probab=92.18  E-value=0.36  Score=25.00  Aligned_cols=143  Identities=13%  Similarity=0.109  Sum_probs=67.6

Q ss_pred             CEEEEEECCCEEEEEECCC-CCCEECCCCCC-CCHHHHHHHHHH-HC--------CCCCCHHHH-HHHH---HH------
Q ss_conf             4399970687479998375-64300022336-300238888988-52--------887610355-6665---54------
Q gi|254781038|r  137 YLVLLVSGGHTQILLVRDV-AHYDRLGTTID-DALGECFDKIAK-SL--------GLPYPGGVE-IEKA---AL------  195 (363)
Q Consensus       137 fL~LlvSGGhT~l~~~~~~-~~~~ilg~T~D-da~Ge~~DK~ar-~L--------gl~yPgGp~-ie~~---A~------  195 (363)
                      .|.+=+-||+|++-+++-. ..+++++..-| .--|+.||+.-. .+        +.+.+-.+. ..++   ++      
T Consensus         7 VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l   86 (193)
T d1bupa2           7 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTL   86 (193)
T ss_dssp             EEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCEEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             99999289919999999819889999853887766568999999999999999818888629999999999999985524


Q ss_pred             HCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             05733345861110688754221024589999998511201210688999999999999999999999998762144552
Q gi|254781038|r  196 MGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQA  275 (363)
Q Consensus       196 ~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~  275 (363)
                      ..+ ....+..+... .+.+++.+               ...++...++..+-+.+.+.+    ++++.... .....+.
T Consensus        87 s~~-~~~~~~~~~~~-~~~~~~~~---------------itr~~~e~~~~~~~~~~~~~i----~~~l~~~~-~~~~~i~  144 (193)
T d1bupa2          87 SSS-TQASIEIDSLY-EGIDFYTS---------------ITRARFEELNADLFRGTLDPV----EKALRDAK-LDKSQIH  144 (193)
T ss_dssp             TTS-SEEEEEEEEEE-TTEEEEEE---------------EEHHHHHHHTHHHHHHTHHHH----HHHHHHHT-CCGGGCC
T ss_pred             CCC-CEEEEEEECCC-CCCCCCEE---------------ECHHHHHHHHHHHHHHHHHHH----HHHHHHCC-CCHHHCC
T ss_conf             898-64899974355-79865448---------------749999999889999999999----99999849-9977897


Q ss_pred             EEEEEHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             36541334587999999999998689
Q gi|254781038|r  276 VLVVSGGVASNHFIRASLIDLCVLHG  301 (363)
Q Consensus       276 ~lvv~GGVaaN~~LR~~l~~~~~~~~  301 (363)
                      .++++||-+...++|+.+++......
T Consensus       145 ~V~lvGG~sr~p~v~~~i~~~f~~~~  170 (193)
T d1bupa2         145 DIVLVGGSTRIPKIQKLLQDFFNGKE  170 (193)
T ss_dssp             EEEEESGGGGCHHHHHHHHHHTTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf             89998882342999999999819998


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]