HHSEARCH alignment of GI: 254781038 and SCOP domain: d1huxa_

Alignment
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}
Probab=99.69  E-value=1.1e-14  Score=118.32  Aligned_cols=255  Identities=17%  Similarity=0.178  Sum_probs=170.6

Q ss_pred             CCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             84688750260220778873388884189887311334621218714559999999969999999999838982245368
Q gi|254781038|r    5 KKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSI   84 (363)
Q Consensus         5 ~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~I   84 (363)
                      .|++||||--.-.|.+++++   .+++|+...+...        +..|+        .+...+.+++++.+....+....
T Consensus         1 ~M~~lGIDiGGT~~k~~vvd---~~g~il~~~~~~t--------~~~~~--------~~~~~i~~~l~~~~~~~~~~~~~   61 (259)
T d1huxa_           1 SIYTLGIDVGSTASKCIILK---DGKEIVAKSLVAV--------GTGTS--------GPARSISEVLENAHMKKEDMAFT   61 (259)
T ss_dssp             CCEEEEEEECSSEEEEEEEE---TTTEEEEEEEEEC--------CSSCC--------HHHHHHHHHHHHHTCCGGGCSEE
T ss_pred             CCEEEEEEECCCEEEEEEEC---CCCCEEEEEEECC--------CCCHH--------HHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             95899999172129999990---8990999999568--------99979--------99999999999725654442122


Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCC-CCEECCC
Q ss_conf             740664301256779999999887514864333036776530132256799843999706874799983756-4300022
Q gi|254781038|r   85 AVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVA-HYDRLGT  163 (363)
Q Consensus        85 avt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~-~~~ilg~  163 (363)
                      ....+++.               ....+|...+||.++|++.+.+..+  .+...++..|+.+.++..++-. .....+.
T Consensus        62 ~~~~~~~~---------------~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~  124 (259)
T d1huxa_          62 LATGYGRN---------------SLEGIADKQMSELSCHAMGASFIWP--NVHTVIDIGGQDVKVIHVENGTMTNFQMND  124 (259)
T ss_dssp             EEESTTTT---------------TTTTTCSEEECHHHHHHHHHHHHCT--TCCEEEEEETTEEEEEEEETTEEEEEEEES
T ss_pred             ECCCCCCH---------------HHHHCCCCCCCCHHHHHHHHHHHCC--CCCEEEECCCCCCEEEEEECCCEEEEECCC
T ss_conf             02454310---------------2331377665318999999998589--988787617878579999689689994476


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             33630023888898852887610355666554057333458611106887542210245899999985112012106889
Q gi|254781038|r  164 TIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADI  243 (363)
Q Consensus       164 T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~di  243 (363)
                      +.+...|.++++.++.++++.+   ++++++..++..     .+. ..  ++.+||  ++.+.....+     .....++
T Consensus       125 ~~~~g~g~~~~~~~~~~~~~~~---e~~~l~~~~~~~-----~~~-~~--~~~~~~--~~~i~~~~~~-----~~~~~~i  186 (259)
T d1huxa_         125 KCAAGTGRFLDVMANILEVKVS---DLAELGAKSTKR-----VAI-SS--TCTVFA--ESEVISQLSK-----GTDKIDI  186 (259)
T ss_dssp             SCCTTSHHHHHHHHHHHTCCTT---THHHHHTTCCSC-----CCC-CC--CSHHHH--HHHHHHHHHT-----TCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCCHH---HHHHHHHCCCCC-----CCC-CC--CCCCHH--HHHHHHHHHC-----CCCHHHH
T ss_conf             3587427899999998099978---999998548998-----666-88--765034--2677677667-----9848899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHH
Q ss_conf             99999999999999999999998762144552365413345879999999999986898899628788772589999999
Q gi|254781038|r  244 CASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAA  323 (363)
Q Consensus       244 aasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag  323 (363)
                      +......+...+...+.+.         ..+..++++|||++|.++|+.+++..   +.+++.|+  +..|. .+|+.|-
T Consensus       187 ~~~~~~~~~~~~~~~~~~~---------~~~~~Iv~gGGv~~~~~~~~~l~~~l---~~~i~~~~--~~~~a-gaiGAA~  251 (259)
T d1huxa_         187 IAGIHRSVASRVIGLANRV---------GIVKDVVMTGGVAQNYGVRGALEEGL---GVEIKTSP--LAQYN-GALGAAL  251 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---------CCCSSEEEESGGGGCHHHHHHHHHHH---CSCEECCG--GGGGH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHC---------CCCCCEEEECCCCCCHHHHHHHHHHH---CCCEECCC--CCCHH-HHHHHHH
T ss_conf             9999999999999999851---------48996899755033499999999997---99787189--96387-9999999


Q ss_pred             HHHHH
Q ss_conf             99998
Q gi|254781038|r  324 LERME  328 (363)
Q Consensus       324 ~~~~~  328 (363)
                      +-+-+
T Consensus       252 lA~~~  256 (259)
T d1huxa_         252 YAYKK  256 (259)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99987


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]