HHSEARCH alignment of GI: 254781038 and SCOP domain: d1z05a3

Alignment
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}
Probab=92.97  E-value=0.18  Score=27.11  Aligned_cols=105  Identities=18%  Similarity=0.238  Sum_probs=73.3

Q ss_pred             CEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             46887502602207788733888841898873113346212187145599999999699999999998389822453687
Q gi|254781038|r    6 KTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA   85 (363)
Q Consensus         6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia   85 (363)
                      ..+||||=+-+..+++++   |.+++++.+...+... ..      |    ..-.+.+..++++.+.+.+.+..++-+|+
T Consensus         4 ~~~lgi~ig~~~i~~~l~---d~~G~il~~~~~~~~~-~~------~----~~~~~~i~~~i~~~~~~~~~~~~~i~gIg   69 (128)
T d1z05a3           4 WQFLSMRLGRGYLTIALH---ELGGEVLIDTKIDIHE-ID------Q----DDVLARLLFEIEEFFQTYAAQLDRVTSIA   69 (128)
T ss_dssp             EEEEEEEEETTEEEEEEE---ETTSCEEEEEEEECCC-CB------H----HHHHHHHHHHHHHHHHHTTTTCCEEEEEE
T ss_pred             CEEEEEEECCCEEEEEEE---CCCCCEEEEEEECCCC-CC------H----HHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             899999989999999999---5989999999721346-89------8----99999999999999997432446615787


Q ss_pred             ECCCCCHHH----------HH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             406643012----------56-77999999988751486433303677653
Q gi|254781038|r   86 VTAGPGLMG----------GL-IVGLMTAKAISYVSHKPFYAINHLEGHIL  125 (363)
Q Consensus        86 vt~gPG~~~----------~L-~vG~~~Ak~la~~~~~Pli~VnH~~aH~~  125 (363)
                      ++. ||..-          .+ ..+...++-|...+++|++=.|...+=++
T Consensus        70 i~~-pG~vd~~~~~~~~~~~~~~~~~~l~~~l~~~~~~PV~l~NDana~a~  119 (128)
T d1z05a3          70 ITL-PGLVNSEQGIVLQMPHYNVKNLALGPEIYKATGLPVFVANDTRAWAL  119 (128)
T ss_dssp             EEE-SSEEETTTTEEEECSSSBCSSBCHHHHHHHHHCSCEEEEEHHHHHHH
T ss_pred             EEE-EEEEECCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHH
T ss_conf             621-00140221042011257878863689999851998999866889999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]