BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease [Candidatus Liberibacter asiaticus str. psy62] (363 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease [Candidatus Liberibacter asiaticus str. psy62] Length = 363 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/363 (100%), Positives = 363/363 (100%) Query: 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHV 60 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHV Sbjct: 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHV 60 Query: 61 DVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHL 120 DVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHL Sbjct: 61 DVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHL 120 Query: 121 EGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSL 180 EGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSL Sbjct: 121 EGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSL 180 Query: 181 GLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDI 240 GLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDI Sbjct: 181 GLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDI 240 Query: 241 ADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLH 300 ADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLH Sbjct: 241 ADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLH 300 Query: 301 GFRFVAPPARLCTDNAVMIAWAALERMEAGLPADDLSISPRSRWPLDEKAPSKIGSGKRG 360 GFRFVAPPARLCTDNAVMIAWAALERMEAGLPADDLSISPRSRWPLDEKAPSKIGSGKRG Sbjct: 301 GFRFVAPPARLCTDNAVMIAWAALERMEAGLPADDLSISPRSRWPLDEKAPSKIGSGKRG 360 Query: 361 VKA 363 VKA Sbjct: 361 VKA 363 >gi|254780429|ref|YP_003064842.1| hypothetical protein CLIBASIA_01570 [Candidatus Liberibacter asiaticus str. psy62] Length = 206 Score = 37.7 bits (86), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 56 ARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFY 115 R H + L I L + +++S +D + GPG G+ V + A+ IS V +P Sbjct: 34 GRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPAL 93 Query: 116 AINHLEGHILTARLTDDIAFPYLVLL 141 + +LE + A L + P +VL+ Sbjct: 94 GVGNLE-VLARAHLDSHVGRPIMVLV 118 >gi|254781095|ref|YP_003065508.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 318 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 23/46 (50%) Query: 251 VVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDL 296 + R+L+ R KQ F++ FP KQ +GG A F + DL Sbjct: 6 ISRLLRERGKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDL 51 >gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 544 Score = 24.3 bits (51), Expect = 3.3, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 15/26 (57%) Query: 316 AVMIAWAALERMEAGLPADDLSISPR 341 A+M W ++ E LP+DDL + R Sbjct: 416 ALMSEWMKGDQQEKRLPSDDLGATMR 441 >gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62] Length = 350 Score = 23.5 bits (49), Expect = 6.5, Method: Compositional matrix adjust. Identities = 9/26 (34%), Positives = 16/26 (61%) Query: 172 CFDKIAKSLGLPYPGGVEIEKAALMG 197 C D ++ L +P V+IEK+ ++G Sbjct: 46 CVDAVSPDEFLIHPDSVDIEKSPIVG 71 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.324 0.139 0.411 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 223,191 Number of Sequences: 1233 Number of extensions: 8711 Number of successful extensions: 24 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 8 length of query: 363 length of database: 328,796 effective HSP length: 75 effective length of query: 288 effective length of database: 236,321 effective search space: 68060448 effective search space used: 68060448 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 39 (19.6 bits)