BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron
metalloprotein/AP endonuclease [Candidatus Liberibacter asiaticus str.
psy62]
         (363 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 363

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/363 (100%), Positives = 363/363 (100%)

Query: 1   MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHV 60
           MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHV
Sbjct: 1   MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHV 60

Query: 61  DVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHL 120
           DVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHL
Sbjct: 61  DVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHL 120

Query: 121 EGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSL 180
           EGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSL
Sbjct: 121 EGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSL 180

Query: 181 GLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDI 240
           GLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDI
Sbjct: 181 GLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDI 240

Query: 241 ADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLH 300
           ADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLH
Sbjct: 241 ADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLH 300

Query: 301 GFRFVAPPARLCTDNAVMIAWAALERMEAGLPADDLSISPRSRWPLDEKAPSKIGSGKRG 360
           GFRFVAPPARLCTDNAVMIAWAALERMEAGLPADDLSISPRSRWPLDEKAPSKIGSGKRG
Sbjct: 301 GFRFVAPPARLCTDNAVMIAWAALERMEAGLPADDLSISPRSRWPLDEKAPSKIGSGKRG 360

Query: 361 VKA 363
           VKA
Sbjct: 361 VKA 363


>gi|254780429|ref|YP_003064842.1| hypothetical protein CLIBASIA_01570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 206

 Score = 37.7 bits (86), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 56  ARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFY 115
            R H + L   I   L  + +++S +D +    GPG   G+ V +  A+ IS V  +P  
Sbjct: 34  GRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPAL 93

Query: 116 AINHLEGHILTARLTDDIAFPYLVLL 141
            + +LE  +  A L   +  P +VL+
Sbjct: 94  GVGNLE-VLARAHLDSHVGRPIMVLV 118


>gi|254781095|ref|YP_003065508.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 318

 Score = 25.8 bits (55), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 251 VVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDL 296
           + R+L+ R KQ    F++ FP KQ     +GG A   F    + DL
Sbjct: 6   ISRLLRERGKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDL 51


>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 544

 Score = 24.3 bits (51), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 316 AVMIAWAALERMEAGLPADDLSISPR 341
           A+M  W   ++ E  LP+DDL  + R
Sbjct: 416 ALMSEWMKGDQQEKRLPSDDLGATMR 441


>gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 350

 Score = 23.5 bits (49), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 172 CFDKIAKSLGLPYPGGVEIEKAALMG 197
           C D ++    L +P  V+IEK+ ++G
Sbjct: 46  CVDAVSPDEFLIHPDSVDIEKSPIVG 71


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.139    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,191
Number of Sequences: 1233
Number of extensions: 8711
Number of successful extensions: 24
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 8
length of query: 363
length of database: 328,796
effective HSP length: 75
effective length of query: 288
effective length of database: 236,321
effective search space: 68060448
effective search space used: 68060448
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 39 (19.6 bits)