HHsearch alignment for GI: 254781039 and conserved domain: COG0569
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].
Probab=97.31 E-value=0.00041 Score=46.46 Aligned_cols=130 Identities=19% Similarity=0.313 Sum_probs=76.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEE-EECHHH-----HHHHHHH
Q ss_conf 7799977887899999999977998189994498999999977898422798817874389-731687-----7555544
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF-SSDHTL-----LQNADIV 78 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~-t~~~~~-----l~~adiI 78 (329)
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d~~~~~~~~~~~~~~~---------~v~gd~t~~~~L~~agi~~aD~v 70 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRDEERVEEFLADELDTH---------VVIGDATDEDVLEEAGIDDADAV 70 (225)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCEE---------EEEECCCCHHHHHHCCCCCCCEE
T ss_conf 98999898578899999998789-908999768899998632000449---------99926889899986798638999
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCH
Q ss_conf 11221777666555533203568505523752000258543101233210012100128881789987653212467731
Q gi|254781039|r 79 LFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKN 158 (329)
Q Consensus 79 iiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d 158 (329)
T Consensus 71 va~t~~d~~N~i~~~la~~~~gv~~vi---------------------------ar~~~~~~~~~~~~~--g~~~ii~Pe 121 (225)
T COG0569 71 VAATGNDEVNSVLALLALKEFGVPRVI---------------------------ARARNPEHEKVLEKL--GADVIISPE 121 (225)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEE---------------------------EEECCCHHHHHHHHC--CCCEEECHH
T ss_conf 998088679999999999873998499---------------------------995694167789867--994897558
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 789999997534111
Q gi|254781039|r 159 IDISRRLSKILTTDS 173 (329)
Q Consensus 159 ~~~~~~i~~~~~~~~ 173 (329)
T Consensus 122 ~~~~~~l~~~i~~p~ 136 (225)
T COG0569 122 KLAAKRLARLIVTPG 136 (225)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999853886