HHsearch alignment for GI: 254781039 and conserved domain: COG2344

>COG2344 AT-rich DNA-binding protein [General function prediction only].
Probab=96.67  E-value=0.0045  Score=39.66  Aligned_cols=80  Identities=14%  Similarity=0.305  Sum_probs=52.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHH-HH-HCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE--EC-HHHHH--H
Q ss_conf             888779997788789999999-99-779981899944989999999778984227988178743897--31-68775--5
Q gi|254781039|r    2 KNYSTIFVIGAGAFGTALSSV-IA-SRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS--SD-HTLLQ--N   74 (329)
Q Consensus         2 ~~~~kI~ViGaGa~GtAlA~~-La-~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t--~~-~~~l~--~   74 (329)
T Consensus        82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V---G-----------~~~~~-v~V~~~d~le~~v~~~d  146 (211)
T COG2344          82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV---G-----------TKIGD-VPVYDLDDLEKFVKKND  146 (211)
T ss_pred             CCCEEEEEECCCHHHHHHHCCCCHHHCCCEEEEEECCCHHHH---C-----------CCCCC-EEEECHHHHHHHHHHCC
T ss_conf             740348999057088898607423326935999961787883---7-----------52488-14552688888988617


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             5544112217776665555332
Q gi|254781039|r   75 ADIVLFATSSKGYGEALNFYSN   96 (329)
Q Consensus        75 adiIiiavps~~~~~~l~~i~~   96 (329)
T Consensus       147 v~iaiLtVPa~~AQ~vad~Lv~  168 (211)
T COG2344         147 VEIAILTVPAEHAQEVADRLVK  168 (211)
T ss_pred             CCEEEEECCHHHHHHHHHHHHH
T ss_conf             6189997348989999999998