HHsearch alignment for GI: 254781039 and conserved domain: COG2344
>COG2344 AT-rich DNA-binding protein [General function prediction only].
Probab=96.67 E-value=0.0045 Score=39.66 Aligned_cols=80 Identities=14% Similarity=0.305 Sum_probs=52.5
Q ss_pred CCCCEEEEECCCHHHHHHHHH-HH-HCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE--EC-HHHHH--H
Q ss_conf 888779997788789999999-99-779981899944989999999778984227988178743897--31-68775--5
Q gi|254781039|r 2 KNYSTIFVIGAGAFGTALSSV-IA-SRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS--SD-HTLLQ--N 74 (329)
Q Consensus 2 ~~~~kI~ViGaGa~GtAlA~~-La-~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t--~~-~~~l~--~ 74 (329)
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V---G-----------~~~~~-v~V~~~d~le~~v~~~d 146 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV---G-----------TKIGD-VPVYDLDDLEKFVKKND 146 (211)
T ss_pred CCCEEEEEECCCHHHHHHHCCCCHHHCCCEEEEEECCCHHHH---C-----------CCCCC-EEEECHHHHHHHHHHCC
T ss_conf 740348999057088898607423326935999961787883---7-----------52488-14552688888988617
Q ss_pred HHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 5544112217776665555332
Q gi|254781039|r 75 ADIVLFATSSKGYGEALNFYSN 96 (329)
Q Consensus 75 adiIiiavps~~~~~~l~~i~~ 96 (329)
T Consensus 147 v~iaiLtVPa~~AQ~vad~Lv~ 168 (211)
T COG2344 147 VEIAILTVPAEHAQEVADRLVK 168 (211)
T ss_pred CCEEEEECCHHHHHHHHHHHHH
T ss_conf 6189997348989999999998