HHsearch alignment for GI: 254781039 and conserved domain: COG4408
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=97.18 E-value=0.005 Score=39.38 Aligned_cols=297 Identities=16% Similarity=0.139 Sum_probs=159.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH----HHHHHHHHCCCCCCCCCCC-----CCCCCEEE---EEC
Q ss_conf 98887799977887899999999977998189994498----9999999778984227988-----17874389---731
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE----ILMQQLEDTRINAKALPGI-----KLSPLLNF---SSD 68 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~----~~~~~i~~~~~n~~~lp~i-----~l~~~i~~---t~~ 68 (329)
T Consensus 1 m~~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~q--l~l~~q~eahr~leg~~~id~~~kd 78 (431)
T COG4408 1 MHNMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQ--LYLQGQGEAHRQLEGSVTIDCYIKD 78 (431)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCE--EEEEECCHHHHHHCCCEEHHHHHHH
T ss_conf 97653235760571778999999860571540357987306789999824985--9997266888864176555288741
Q ss_pred H-HHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCC--CEEECCCCCCCCCCCCCCHHHHHHH------------HHCCC
Q ss_conf 6-8775555441122177766655553320-35685--0552375200025854310123321------------00121
Q gi|254781039|r 69 H-TLLQNADIVLFATSSKGYGEALNFYSNW-LKESA--EIIICSKGFEYNSGMLLSSYSEKVL------------PSHSI 132 (329)
Q Consensus 69 ~-~~l~~adiIiiavps~~~~~~l~~i~~~-l~~~~--~ii~~sKGi~~~t~~~~se~i~~~~------------~~~~~ 132 (329)
T Consensus 79 ~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfG----sn~lv~~~mnk~~~daeViS~SsY~~dTk~ 154 (431)
T COG4408 79 LAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFG----SNLLVQNLMNKAGRDAEVISLSSYYADTKY 154 (431)
T ss_pred HHHHHCHHHEEEEEEECHHHHHHHHCCCHHHHCCCCEEEEECCCCC----CCHHHHHHHHHHCCCCEEEEEEHHCCCCEE
T ss_conf 9875140446888951088999996389868515547999624456----337999987660898069975011154134
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEH--------HHHHHHHHHHHHHH
Q ss_conf 0012888178998765321246773178999999753411138997388614444000--------25677889975211
Q gi|254781039|r 133 SVLSGPGFARDIAQGLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGA--------LKNVIAIASGILKG 204 (329)
Q Consensus 133 ~vlsGPs~A~Eia~~~pt~~~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~ga--------lKNv~AIa~Gi~~g 204 (329)
T Consensus 155 id~~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif-~~ 233 (431)
T COG4408 155 IDAEQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIF-YP 233 (431)
T ss_pred ECCCCCCHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCEEECCCCHHHHHHHHHHH-CC
T ss_conf 42558525889987672660367899718899999998659725873784655304631121684021256799885-77
Q ss_pred H----------CCCCHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCHHHHH-----------
Q ss_conf 0----------0380578999--9998999999998722544553200232101577644775300678-----------
Q gi|254781039|r 205 R----------GCGDSARAIV--MVQGLSEIMKLTEAMNGRADTILRLSGVGDLILTATSEQSRNFCFG----------- 261 (329)
Q Consensus 205 l----------~~g~N~~aal--~~~g~~Em~~l~~~~g~~~~t~~glaG~GDl~~T~~s~~SRN~~~G----------- 261 (329)
T Consensus 234 ~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~-~e~l~r~dId~F~~~~~i~QeY 312 (431)
T COG4408 234 EQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVR-AEMLSRRDIDEFPQLPPIEQEY 312 (431)
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC-HHHCCCCCHHHCCCCCHHHHHH
T ss_conf 688730673278999778999999999999999999739974037877415888768-4654700300033378698889
Q ss_pred -------HHHHCCCCCCHHC-------------------------CCEECHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf -------7750890702572-------------------------9600319999999999998289871599999
Q gi|254781039|r 262 -------IALGRGEKQNPDQ-------------------------IQLVEGAIAVSCVINISKKMGLKLPIFQAIS 305 (329)
Q Consensus 262 -------~~lg~g~~~~~~~-------------------------~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~ 305 (329)
T Consensus 313 lLfVRYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~l 388 (431)
T COG4408 313 LLFVRYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLL 388 (431)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9999877774188898233675411114510355546655334788868989999999999986087883299999