HHsearch alignment for GI: 254781039 and conserved domain: PRK05479
>PRK05479 ketol-acid reductoisomerase; Provisional.
Probab=97.85 E-value=0.00013 Score=49.59 Aligned_cols=201 Identities=19% Similarity=0.284 Sum_probs=126.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC
Q ss_conf 877999778878999999999779981899944989-9999997789842279881787438973168775555441122
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI-LMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT 82 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~-~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav 82 (329)
T Consensus 17 ~k~iaViGYGsQG~AhAlNLrDSG~-~V~vglr~gs~S~~kA~~dG--------------f~v~~~~eA~~~aDii~~L~ 81 (336)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREGSKSWKKAEADG--------------FEVLTVAEAAKWADVIMILL 81 (336)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHCC--------------CEECCHHHHHHHCCEEEEEC
T ss_conf 9979997527076898855374499-77999799980399999879--------------94367999997468665428
Q ss_pred CHHHHHHHHH-HHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEE----CCCCCHH--HHHH--HHHHHHCC
Q ss_conf 1777666555-533203568505523752000258543101233210012100----1288817--8998--76532124
Q gi|254781039|r 83 SSKGYGEALN-FYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISV----LSGPGFA--RDIA--QGLPVGVI 153 (329)
Q Consensus 83 ps~~~~~~l~-~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~v----lsGPs~A--~Eia--~~~pt~~~ 153 (329)
T Consensus 82 PD~~q~~vy~~~I~p~lk~G~-~L~FaHGFnIh--------y~~I~pp~~vDVimVAPKgpG~~VR~~y~~G~GvP~liA 152 (336)
T PRK05479 82 PDELQAEVYKEEIEPNLKEGA-ALAFAHGFNIH--------FGQIVPPADVDVIMVAPKGPGHLVRREYVEGGGVPCLIA 152 (336)
T ss_pred CHHHHHHHHHHHHHHHCCCCC-EEEEECCCHHC--------CCEEEECCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEE
T ss_conf 757789999999985458997-68861443000--------560444589767998889997689999863898048999
Q ss_pred CC----CCHHHHHHHHHHHHCCC-------CEEEEECCCCCEEE--EEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 67----73178999999753411-------13899738861444--4000256778899752110038057899999989
Q gi|254781039|r 154 LS----SKNIDISRRLSKILTTD-------SFRVYCSDDRIGVQ--IGGALKNVIAIASGILKGRGCGDSARAIVMVQGL 220 (329)
Q Consensus 154 ia----~~d~~~~~~i~~~~~~~-------~~~~~~s~D~~GvE--~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~ 220 (329)
T Consensus 153 V~qD~sG~A~~~alaya~~iG~~raGvieTTF~eEtetDLfGEQ~VLcGG~~~Li--~agFetLveaGy~PE~AYfE-~l 229 (336)
T PRK05479 153 VHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELI--KAGFETLVEAGYQPEMAYFE-CL 229 (336)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHCHHHHHH--HHHHHHHHHCCCCHHHHHHH-HH
T ss_conf 9868873599999999987387766557425599988762445788624399999--99999999849988999999-99
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999998722
Q gi|254781039|r 221 SEIMKLTEAMN 231 (329)
Q Consensus 221 ~Em~~l~~~~g 231 (329)
T Consensus 230 hElKlIvDLi~ 240 (336)
T PRK05479 230 HELKLIVDLIY 240 (336)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999