HHsearch alignment for GI: 254781039 and conserved domain: PRK05600
>PRK05600 thiamine biosynthesis protein ThiF; Validated.
Probab=96.42 E-value=0.0035 Score=40.41 Aligned_cols=107 Identities=19% Similarity=0.295 Sum_probs=70.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCC-C--CCCC--------CCCCCCEEEEE-----
Q ss_conf 877999778878999999999779981899944989999999778984-2--2798--------81787438973-----
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINA-K--ALPG--------IKLSPLLNFSS----- 67 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~-~--~lp~--------i~l~~~i~~t~----- 67 (329)
T Consensus 41 ~a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~Ve~sNL~RQil~~~~diG~~K~~~A~~~l~~lNp~i~i~~~~~~l 120 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERL 120 (370)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEHHHHC
T ss_conf 19789988875789999999982897489873898260210555426976669757999999999878997157356646
Q ss_pred ----CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC-CCCC
Q ss_conf ----16877555544112217776665555332035685055237-5200
Q gi|254781039|r 68 ----DHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS-KGFE 112 (329)
Q Consensus 68 ----~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s-KGi~ 112 (329)
T Consensus 121 ~~~n~~~li~~~DvVvD~tDNf~tRylindaC~~--~~~PlV~ga~~~~e 168 (370)
T PRK05600 121 TAENAVELLNGVDLVLDGSDSFATKFLVADAAEI--TGTPLVWGTVLRFH 168 (370)
T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH--HCCCEEEEEECCCE
T ss_conf 9999998763687899778887999999999998--49976984532628