HHsearch alignment for GI: 254781039 and conserved domain: PRK08644
>PRK08644 thiamine biosynthesis protein ThiF; Provisional.
Probab=96.90 E-value=0.0012 Score=43.39 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=62.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCC--CC--------CCCCCCEEEEE------
Q ss_conf 877999778878999999999779981899944989999999778984227--98--------81787438973------
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKAL--PG--------IKLSPLLNFSS------ 67 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~l--p~--------i~l~~~i~~t~------ 67 (329)
T Consensus 27 ~s~VlivG~GGLG~~~a~~La~aGVG~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~v~I~~~~~~l~ 106 (209)
T PRK08644 27 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMFKVEALKENLLRINPFVKIEVHQVKID 106 (209)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 29689988878899999999993898189988999015411037567877597569999999874489828999722489
Q ss_pred ---CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf ---16877555544112217776665555332035685055237
Q gi|254781039|r 68 ---DHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 68 ---~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
T Consensus 107 ~~n~~~l~~~~DiViDctDN~~tR~li~~~c~~-~~~~plV~as 149 (209)
T PRK08644 107 EDNIEELFKDCDIVVEAFDNAETKAMLVETVLE-KKGKKVVSAS 149 (209)
T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH-HCCCCEEEEE
T ss_conf 899999985799999999999999999999999-7799689996