HHsearch alignment for GI: 254781039 and conserved domain: PRK12809
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed.
Probab=97.35 E-value=0.00057 Score=45.54 Aligned_cols=129 Identities=21% Similarity=0.275 Sum_probs=69.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH---------------------HHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 877999778878999999999779981899944989---------------------99999977898422798817874
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI---------------------LMQQLEDTRINAKALPGIKLSPL 62 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~---------------------~~~~i~~~~~n~~~lp~i~l~~~ 62 (329)
T Consensus 310 gkKVAVIGsGPAGLaaA~~Lar~G-~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~l--------GV~f~~n 380 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAG-VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAM--------GIDFHLN 380 (639)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHC--------CCEEEEC
T ss_conf 998999897589999999999759-9069993688889868535874527778999999999864--------9889919
Q ss_pred EEEEEC---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CEEECCCCCCCCCCCCCC-----HHHHHHHHHCCCE
Q ss_conf 389731---6877555544112217776665555332035685-055237520002585431-----0123321001210
Q gi|254781039|r 63 LNFSSD---HTLLQNADIVLFATSSKGYGEALNFYSNWLKESA-EIIICSKGFEYNSGMLLS-----SYSEKVLPSHSIS 133 (329)
Q Consensus 63 i~~t~~---~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~-~ii~~sKGi~~~t~~~~s-----e~i~~~~~~~~~~ 133 (329)
T Consensus 381 ~~VGkDit~~eL~~~yDAVflg~Ga~~~~~l--~Ip---Gedl~GV~~AlefL~~~~~~~~g~~~~~~~p~~~~~GK~VV 455 (639)
T PRK12809 381 CEIGRDITFSDLTSEYDAVFIGVGTYGMMRA--DLP---HEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVV 455 (639)
T ss_pred CEECCCCCHHHHHHHCCEEEEEECCCCCCCC--CCC---CCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
T ss_conf 6779868899997317989997367888548--988---77787838769999999986438864445775455677799
Q ss_pred ECCCCCHHHHHHH
Q ss_conf 0128881789987
Q gi|254781039|r 134 VLSGPGFARDIAQ 146 (329)
Q Consensus 134 vlsGPs~A~Eia~ 146 (329)
T Consensus 456 VIGGGntAmDcaR 468 (639)
T PRK12809 456 VLGGGDTTMDCLR 468 (639)
T ss_pred EECCCCHHHHHHH
T ss_conf 9899821899999