HHsearch alignment for GI: 254781039 and conserved domain: PRK12814
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional.
Probab=97.44 E-value=0.0011 Score=43.75 Aligned_cols=123 Identities=22% Similarity=0.286 Sum_probs=69.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH---------------------HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8877999778878999999999779981899944989---------------------9999997789842279881787
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI---------------------LMQQLEDTRINAKALPGIKLSP 61 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~---------------------~~~~i~~~~~n~~~lp~i~l~~ 61 (329)
T Consensus 192 tGKkVAIIGaGPAGLsaAy~L~~~G-h~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~--------GV~~~~ 262 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKG-HDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAM--------GAEFRF 262 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHC--------CCEEEE
T ss_conf 8997999683789999999999779-9069981588889867644863338999999999999971--------985886
Q ss_pred CEEEEEC--H-HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHH--HHHHCCCEECC
Q ss_conf 4389731--6-87755554411221777666555533203568505523752000258543101233--21001210012
Q gi|254781039|r 62 LLNFSSD--H-TLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEK--VLPSHSISVLS 136 (329)
Q Consensus 62 ~i~~t~~--~-~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~--~~~~~~~~vls 136 (329)
T Consensus 263 n~~vG~ditl~~L~~~yDAVflaiGa~~~r~L-----~-ip-Ged----l~gV~~-avdfL~~v~~g~~~~~GkkVvVIG 330 (652)
T PRK12814 263 NTVFGRDITLEELQKEFDAVLLAVGAQKASKM-----G-IP-GEE----LPGVIS-GIDFLRNVALGTALHPGKKVVVIG 330 (652)
T ss_pred EEEECCCCCHHHHHHHCCEEEEEECCCCCCCC-----C-CC-CCC----CCCEEE-HHHHHHHHHCCCCCCCCCCCEEEC
T ss_conf 67947747799998658999997557877447-----9-88-887----877276-899999852698666788524866
Q ss_pred CCCHHHHHHH
Q ss_conf 8881789987
Q gi|254781039|r 137 GPGFARDIAQ 146 (329)
Q Consensus 137 GPs~A~Eia~ 146 (329)
T Consensus 331 GGNtAmD~AR 340 (652)
T PRK12814 331 GGNTAIDAAR 340 (652)
T ss_pred CCCHHHHHHH
T ss_conf 8813899999