HHsearch alignment for GI: 254781039 and conserved domain: TIGR02354
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=93.16 E-value=0.08 Score=31.56 Aligned_cols=118 Identities=18% Similarity=0.239 Sum_probs=69.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC--------------------CCCCCCCCCCCCCCE
Q ss_conf 877999778878999999999779981899944989999999778--------------------984227988178743
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR--------------------INAKALPGIKLSPLL 63 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~--------------------~n~~~lp~i~l~~~i 63 (329)
T Consensus 21 ~a~VAicGlGGLGS~~AinLAR~GigkLiLvDfDvvepsNLnRQqY~~s~~G~~KteAlke~i~einP--y~~ie~~d-~ 97 (200)
T TIGR02354 21 KASVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKVSDVGKKKTEALKENISEINP--YVEIEIID-E 97 (200)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC--CCEEEEEE-C
T ss_conf 58278970161168999999873022025664043236656132578762486217999987865088--42123110-2
Q ss_pred EEEE-C-HHHHHHHHHHHCCCCHHHHHHHHH-HHHHHCCCCCCEEECCCCC--CCCCCCCCCHHHHHH
Q ss_conf 8973-1-687755554411221777666555-5332035685055237520--002585431012332
Q gi|254781039|r 64 NFSS-D-HTLLQNADIVLFATSSKGYGEALN-FYSNWLKESAEIIICSKGF--EYNSGMLLSSYSEKV 126 (329)
Q Consensus 64 ~~t~-~-~~~l~~adiIiiavps~~~~~~l~-~i~~~l~~~~~ii~~sKGi--~~~t~~~~se~i~~~ 126 (329)
T Consensus 98 ki~E~N~~~~fkdaDiv~EAFDna~aKam~~n~vl~~yk-dk-~li~ASGlAGy~D~NsI~trKI~k~ 163 (200)
T TIGR02354 98 KIDEENLDKLFKDADIVCEAFDNAEAKAMLVNAVLEKYK-DK-KLIAASGLAGYDDANSIKTRKISKR 163 (200)
T ss_pred CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCC-CC-EEEEECCCCCCCCCCCCCCCEECCC
T ss_conf 127667987840674788716998899999999997678-64-5876026645242110001211463