HHsearch alignment for GI: 254781039 and conserved domain: TIGR02441
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=95.27 E-value=0.00089 Score=44.24 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=72.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH--------HHHHHHHCCCCCCCCCCC---CCCCCEEEEECHHHH
Q ss_conf 877999778878999999999779981899944989--------999999778984227988---178743897316877
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI--------LMQQLEDTRINAKALPGI---KLSPLLNFSSDHTLL 72 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~--------~~~~i~~~~~n~~~lp~i---~l~~~i~~t~~~~~l 72 (329)
T Consensus 337 Vk~~avlGAGLMGAGIaqVsvDKG~-~tvlkDat~~gl~RGq~Qv~kgLn~~-VKrk~i~~lErd~i~~~L~~~lDY~~f 414 (740)
T TIGR02441 337 VKTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATEAGLDRGQQQVFKGLNKK-VKRKKITSLERDSILSNLTPTLDYSGF 414 (740)
T ss_pred CCEEEEECCCCCCCCEEEEEEECCC-EEEECCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 2237886134002724899981771-46320044678873288898642233-346675454466688615654153330
Q ss_pred HHHHHHHCCCCH--HHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 555544112217--776665555332035685055237520
Q gi|254781039|r 73 QNADIVLFATSS--KGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 73 ~~adiIiiavps--~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
T Consensus 415 ~~AD~vIEAVFEDl~~KH~ViKe~EaVvp~hciiAsNTSAl 455 (740)
T TIGR02441 415 KNADVVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSAL 455 (740)
T ss_pred CCCCEEEEEEECCCCCCCEEEEEEEEECCCCCEEECCCCCC
T ss_conf 01777899762353104134545520058873572055536