HHsearch alignment for GI: 254781039 and conserved domain: cd05197
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.02 E-value=0.015 Score=36.28 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=51.6
Q ss_pred CEEEEECCCHHHHH-HHHHHHHC----CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHH
Q ss_conf 77999778878999-99999977----998189994498999999977898422798817874389731-6877555544
Q gi|254781039|r 5 STIFVIGAGAFGTA-LSSVIASR----GLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIV 78 (329)
Q Consensus 5 ~kI~ViGaGa~GtA-lA~~La~~----g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiI 78 (329)
T Consensus 1 mKI~iIGaGS~~t~~lv~~l~~~~~~l~~~ei~L~DId~erL~~~~~~a~--~~~~~~~~~~~v~~ttd~~eAl~gADfV 78 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK--RYVEEVGADIKFEKTMDLEDAIIDADFV 78 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCHHHCCCCEEEEECCCHHHHHHHHHHHH--HHHHHHCCCEEEEEECCHHHHHCCCCEE
T ss_conf 97999898368789999999838433788989998899999999999999--9999619983899978999985689999
Q ss_pred HCCCCHHHHHHHH
Q ss_conf 1122177766655
Q gi|254781039|r 79 LFATSSKGYGEAL 91 (329)
Q Consensus 79 iiavps~~~~~~l 91 (329)
T Consensus 79 i~~irvGg~~~r~ 91 (425)
T cd05197 79 INQFRVGGLTYRE 91 (425)
T ss_pred EEEEEECCHHHHH
T ss_conf 9988756705789