HHsearch alignment for GI: 254781039 and conserved domain: cd05294
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.92 E-value=2.9e-05 Score=53.90 Aligned_cols=103 Identities=19% Similarity=0.325 Sum_probs=67.0
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCEEEEEECCHHH--HHH--HHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHH
Q ss_conf 77999778-878999999999779-9818999449899--999--99778984227988178743897316877555544
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRG-LANVTLLGRKEIL--MQQ--LEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIV 78 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g-~~~V~l~~r~~~~--~~~--i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiI 78 (329)
T Consensus 1 mKV~IiGAaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~a~g~a~Dl~~~~~----~~~~~~~i~~~~d~~~~~daDiv 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALA----AAGIDAEIKISSDLSDVAGSDIV 76 (309)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHCCCC----CCCCCCEEEECCCHHHHCCCCEE
T ss_conf 98999999976999999999837998759996055643423112355450343----36887679827988996899999
Q ss_pred HCCCCH----------------HHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 112217----------------7766655553320356850552375200
Q gi|254781039|r 79 LFATSS----------------KGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 79 iiavps----------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
T Consensus 77 VitAG~~rk~g~tR~dLl~~Na~I~~~i~~~i~~~~-p~~ivivvtNPvD 125 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVD 125 (309)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHH
T ss_conf 987898899599878999989999999998764269-9849997689657