Query gi|254781039|ref|YP_003065452.1| putative glycerol-3-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 329
No_of_seqs 185 out of 2814
Neff 7.2
Searched_HMMs 39220
Date Mon May 30 05:12:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781039.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12439 NAD(P)H-dependent gly 100.0 0 0 719.1 28.2 326 2-329 4-334 (340)
2 COG0240 GpsA Glycerol-3-phosph 100.0 0 0 718.9 26.5 325 4-329 1-329 (329)
3 PRK00094 gpsA NAD(P)H-dependen 100.0 0 0 711.1 26.9 320 4-324 1-325 (325)
4 TIGR03376 glycerol3P_DH glycer 100.0 0 0 667.7 25.8 313 6-321 1-342 (342)
5 KOG2711 consensus 100.0 0 0 520.6 20.7 322 5-329 22-372 (372)
6 pfam07479 NAD_Gly3P_dh_C NAD-d 100.0 0 0 326.8 10.2 142 180-321 1-145 (145)
7 pfam01210 NAD_Gly3P_dh_N NAD-d 100.0 3.8E-43 0 300.2 11.2 158 5-163 1-159 (159)
8 PRK06522 2-dehydropantoate 2-r 99.9 7.1E-25 1.8E-29 181.4 11.3 286 5-310 1-299 (307)
9 PRK08229 2-dehydropantoate 2-r 99.8 1.2E-19 3E-24 147.5 15.8 292 4-310 2-315 (341)
10 PRK12921 2-dehydropantoate 2-r 99.8 5.2E-18 1.3E-22 136.8 12.1 283 5-310 1-300 (306)
11 PRK06249 2-dehydropantoate 2-r 99.8 5.7E-18 1.4E-22 136.5 11.8 282 1-309 1-306 (313)
12 PRK05708 2-dehydropantoate 2-r 99.8 1.1E-17 2.8E-22 134.6 11.5 283 1-310 1-295 (305)
13 TIGR00745 apbA_panE 2-dehydrop 99.8 1.4E-17 3.6E-22 134.0 11.9 285 6-310 1-327 (332)
14 COG1004 Ugd Predicted UDP-gluc 99.8 1.3E-16 3.2E-21 127.8 16.2 273 5-324 1-305 (414)
15 COG1893 ApbA Ketopantoate redu 99.7 5.5E-16 1.4E-20 123.6 12.9 280 5-310 1-298 (307)
16 TIGR03026 NDP-sugDHase nucleot 99.7 1.7E-15 4.3E-20 120.5 14.8 267 5-309 1-294 (411)
17 PRK11559 garR tartronate semia 99.7 4.4E-14 1.1E-18 111.3 18.9 271 5-322 2-286 (295)
18 PRK11880 pyrroline-5-carboxyla 99.6 9.2E-14 2.4E-18 109.2 17.6 193 4-240 2-201 (267)
19 PRK07679 pyrroline-5-carboxyla 99.6 5.5E-13 1.4E-17 104.1 19.2 264 3-322 2-276 (279)
20 PRK12491 pyrroline-5-carboxyla 99.6 4.8E-13 1.2E-17 104.5 18.3 198 1-240 1-203 (272)
21 PRK07680 late competence prote 99.5 7.2E-13 1.8E-17 103.4 16.0 195 5-240 1-201 (273)
22 PRK07634 pyrroline-5-carboxyla 99.5 9.7E-13 2.5E-17 102.5 15.8 198 1-239 1-204 (245)
23 PRK06928 pyrroline-5-carboxyla 99.5 1.5E-13 3.8E-18 107.8 11.0 154 4-179 1-159 (275)
24 PRK11064 wecC UDP-N-acetyl-D-m 99.5 2.7E-13 6.8E-18 106.2 11.9 217 3-243 2-249 (415)
25 COG0345 ProC Pyrroline-5-carbo 99.5 2.4E-12 6.2E-17 99.9 14.2 197 4-241 1-201 (266)
26 COG2084 MmsB 3-hydroxyisobutyr 99.5 1.5E-11 3.8E-16 94.8 17.0 260 5-309 1-266 (286)
27 pfam02558 ApbA Ketopantoate re 99.4 3.2E-13 8.1E-18 105.7 7.0 117 7-131 1-117 (150)
28 pfam03807 F420_oxidored NADP o 99.4 8.9E-13 2.3E-17 102.8 7.9 93 6-110 1-93 (93)
29 PRK06476 pyrroline-5-carboxyla 99.4 1.8E-11 4.7E-16 94.2 14.2 188 5-240 1-192 (255)
30 pfam03446 NAD_binding_2 NAD bi 99.3 6.3E-12 1.6E-16 97.2 9.3 149 4-171 1-153 (163)
31 PRK07417 arogenate dehydrogena 99.3 1.2E-11 3.1E-16 95.4 10.6 159 5-179 2-166 (280)
32 pfam03721 UDPG_MGDP_dh_N UDP-g 99.3 1.9E-11 4.8E-16 94.2 10.2 161 5-168 1-185 (185)
33 PRK07502 cyclohexadienyl dehyd 99.3 8E-11 2E-15 90.1 11.9 166 1-178 1-176 (307)
34 COG2085 Predicted dinucleotide 99.3 4.1E-11 1E-15 92.0 9.8 159 4-175 1-174 (211)
35 PRK08655 prephenate dehydrogen 99.3 2.6E-11 6.7E-16 93.2 8.8 154 5-180 1-162 (441)
36 PRK08507 prephenate dehydrogen 99.2 2.5E-10 6.4E-15 86.8 11.9 159 5-179 1-166 (275)
37 PRK09599 6-phosphogluconate de 99.1 3.8E-09 9.7E-14 79.2 13.9 266 5-322 1-289 (301)
38 PRK07530 3-hydroxybutyryl-CoA 99.1 2.8E-10 7.1E-15 86.5 8.0 112 1-113 1-124 (292)
39 COG0677 WecC UDP-N-acetyl-D-ma 99.1 1.8E-09 4.5E-14 81.3 11.2 212 5-239 10-248 (436)
40 PRK06130 3-hydroxybutyryl-CoA 99.1 1.3E-09 3.2E-14 82.3 10.2 168 1-184 1-183 (310)
41 PRK05808 3-hydroxybutyryl-CoA 99.1 8.8E-10 2.2E-14 83.3 8.5 109 3-112 2-122 (282)
42 PRK07066 3-hydroxybutyryl-CoA 99.0 1.4E-09 3.5E-14 82.0 8.9 111 1-113 4-124 (321)
43 PRK06035 3-hydroxyacyl-CoA deh 99.0 1.4E-09 3.7E-14 81.9 8.3 169 3-185 2-190 (291)
44 KOG0409 consensus 99.0 2.7E-08 6.9E-13 73.6 14.4 270 4-319 35-318 (327)
45 PRK12490 6-phosphogluconate de 99.0 4.2E-09 1.1E-13 78.9 10.1 261 5-311 1-274 (298)
46 PRK08293 3-hydroxybutyryl-CoA 99.0 2.9E-09 7.3E-14 80.0 8.9 198 3-237 2-217 (288)
47 PRK07660 consensus 99.0 2.1E-09 5.3E-14 80.9 7.8 110 3-113 2-123 (283)
48 PRK09117 consensus 99.0 3.3E-09 8.5E-14 79.5 8.4 109 3-112 1-121 (282)
49 PRK07531 bifunctional 3-hydrox 99.0 2.8E-09 7.1E-14 80.0 7.9 109 4-113 2-119 (489)
50 PRK09260 3-hydroxybutyryl-CoA 99.0 2.2E-09 5.5E-14 80.8 7.1 167 4-182 2-184 (289)
51 PRK06129 3-hydroxyacyl-CoA deh 98.9 2E-08 5.2E-13 74.4 9.5 170 3-184 1-187 (308)
52 PRK06545 prephenate dehydrogen 98.9 1.7E-08 4.3E-13 75.0 8.9 160 5-178 1-169 (357)
53 PRK08268 3-hydroxybutyryl-CoA 98.9 9.2E-09 2.4E-13 76.7 7.5 108 3-113 2-123 (503)
54 COG0287 TyrA Prephenate dehydr 98.9 1.8E-08 4.5E-13 74.8 8.8 160 3-178 2-168 (279)
55 pfam02737 3HCDH_N 3-hydroxyacy 98.9 1.1E-08 2.9E-13 76.1 7.7 106 6-112 1-118 (180)
56 PTZ00142 6-phosphogluconate de 98.8 3.3E-08 8.4E-13 73.1 9.2 155 1-171 1-162 (474)
57 PRK07819 3-hydroxybutyryl-CoA 98.8 3E-08 7.6E-13 73.3 7.8 108 4-113 2-123 (284)
58 pfam10727 Rossmann-like Rossma 98.5 6.5E-07 1.7E-11 64.6 7.2 89 8-110 1-90 (111)
59 PRK11730 fadB multifunctional 98.5 3.9E-07 9.9E-12 66.1 6.0 108 3-113 312-433 (715)
60 TIGR01915 npdG NADPH-dependent 98.5 6.6E-07 1.7E-11 64.6 7.1 162 5-169 1-189 (233)
61 PTZ00117 malate dehydrogenase; 98.4 1.4E-06 3.5E-11 62.6 7.9 104 4-112 1-122 (313)
62 PTZ00082 L-lactate dehydrogena 98.4 1.5E-06 3.8E-11 62.3 8.0 107 1-112 4-133 (322)
63 PRK11199 tyrA bifunctional cho 98.4 1.4E-06 3.7E-11 62.4 7.7 138 4-179 98-240 (374)
64 COG1250 FadB 3-hydroxyacyl-CoA 98.4 8.2E-07 2.1E-11 64.0 6.4 108 3-112 2-122 (307)
65 TIGR00872 gnd_rel 6-phosphoglu 98.4 2E-06 5E-11 61.5 7.5 271 4-306 1-309 (341)
66 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.3 9E-07 2.3E-11 63.7 4.8 175 1-182 2-197 (508)
67 PRK11154 fadJ multifunctional 98.3 2.9E-06 7.3E-11 60.5 6.8 107 3-112 308-429 (706)
68 KOG2304 consensus 98.2 1.7E-06 4.3E-11 62.0 5.2 110 1-111 8-135 (298)
69 cd05293 LDH_1 A subgroup of L- 98.2 7.9E-06 2E-10 57.6 7.7 104 3-112 2-124 (312)
70 PRK00066 ldh L-lactate dehydro 98.2 8.6E-06 2.2E-10 57.3 7.8 105 2-111 4-125 (315)
71 PRK06223 malate dehydrogenase; 98.2 9.1E-06 2.3E-10 57.2 7.9 105 5-112 1-122 (312)
72 TIGR00873 gnd 6-phosphoglucona 98.1 5E-06 1.3E-10 58.9 5.4 129 6-140 1-139 (480)
73 KOG2666 consensus 98.1 1.4E-05 3.5E-10 56.0 7.6 205 4-237 1-247 (481)
74 pfam01488 Shikimate_DH Shikima 98.1 7.6E-06 1.9E-10 57.7 6.1 76 4-86 12-87 (134)
75 PRK13403 ketol-acid reductoiso 98.1 4.5E-05 1.1E-09 52.7 9.9 278 4-322 16-320 (335)
76 cd05291 HicDH_like L-2-hydroxy 98.1 1.7E-05 4.3E-10 55.4 7.7 101 5-112 1-121 (306)
77 PRK09496 trkA potassium transp 98.1 4.9E-05 1.3E-09 52.4 9.7 84 5-98 1-89 (455)
78 COG0059 IlvC Ketol-acid reduct 98.0 0.00013 3.4E-09 49.6 11.4 195 3-231 17-241 (338)
79 COG1748 LYS9 Saccharopine dehy 98.0 0.00011 2.8E-09 50.2 10.7 85 4-94 1-88 (389)
80 cd05292 LDH_2 A subgroup of L- 98.0 2.6E-05 6.5E-10 54.3 7.3 101 5-112 1-120 (308)
81 pfam00056 Ldh_1_N lactate/mala 98.0 1.8E-05 4.7E-10 55.2 6.6 103 5-111 1-121 (142)
82 pfam02153 PDH Prephenate dehyd 98.0 4.5E-05 1.1E-09 52.7 8.4 141 19-178 1-155 (258)
83 TIGR01035 hemA glutamyl-tRNA r 97.9 1.2E-05 3E-10 56.5 4.5 74 4-86 185-263 (436)
84 cd05213 NAD_bind_Glutamyl_tRNA 97.9 4.7E-05 1.2E-09 52.6 7.4 81 4-94 178-258 (311)
85 PTZ00325 malate dehydrogenase; 97.9 6E-05 1.5E-09 51.9 7.9 102 4-111 1-120 (313)
86 cd05294 LDH-like_MDH_nadp A la 97.9 2.9E-05 7.5E-10 53.9 6.2 103 5-112 1-125 (309)
87 cd01339 LDH-like_MDH L-lactate 97.9 3.8E-05 9.8E-10 53.1 6.8 100 7-111 1-118 (300)
88 PRK09287 6-phosphogluconate de 97.9 2.8E-05 7.1E-10 54.0 5.7 140 15-171 1-146 (459)
89 TIGR01692 HIBADH 3-hydroxyisob 97.9 0.00012 3.2E-09 49.8 9.0 191 9-239 1-199 (290)
90 COG0362 Gnd 6-phosphogluconate 97.9 4.2E-05 1.1E-09 52.9 6.5 172 1-185 1-180 (473)
91 cd05290 LDH_3 A subgroup of L- 97.9 4.9E-05 1.3E-09 52.4 6.8 101 6-112 1-123 (307)
92 PRK05479 ketol-acid reductoiso 97.9 0.00013 3.4E-09 49.6 8.6 201 4-231 17-240 (336)
93 cd01337 MDH_glyoxysomal_mitoch 97.8 9.1E-05 2.3E-09 50.7 7.2 99 5-112 1-121 (310)
94 KOG3124 consensus 97.8 0.00013 3.4E-09 49.6 7.4 155 5-181 1-161 (267)
95 PRK00045 hemA glutamyl-tRNA re 97.7 5.3E-05 1.4E-09 52.2 4.9 73 4-86 182-254 (429)
96 cd00300 LDH_like L-lactate deh 97.7 0.00011 2.8E-09 50.1 6.3 102 7-112 1-119 (300)
97 PRK13304 L-aspartate dehydroge 97.7 0.00021 5.3E-09 48.4 7.4 92 4-110 1-94 (265)
98 cd00704 MDH Malate dehydrogena 97.7 0.00031 8E-09 47.2 8.2 102 5-112 1-130 (323)
99 COG0039 Mdh Malate/lactate deh 97.6 0.00013 3.3E-09 49.7 5.8 103 5-112 1-122 (313)
100 PRK00048 dihydrodipicolinate r 97.6 0.00026 6.6E-09 47.7 6.9 139 4-170 2-145 (265)
101 PRK08306 dipicolinate synthase 97.6 0.00024 6E-09 48.0 6.7 64 5-85 3-66 (296)
102 pfam02826 2-Hacid_dh_C D-isome 97.6 0.00018 4.7E-09 48.7 6.0 90 5-111 37-128 (176)
103 cd00650 LDH_MDH_like NAD-depen 97.6 0.00022 5.7E-09 48.2 6.1 100 7-112 1-123 (263)
104 TIGR02356 adenyl_thiF thiazole 97.6 0.00015 3.8E-09 49.3 5.1 102 5-108 22-147 (210)
105 TIGR01763 MalateDH_bact malate 97.5 0.00016 4E-09 49.1 5.0 121 5-133 2-143 (308)
106 COG0373 HemA Glutamyl-tRNA red 97.5 0.00018 4.5E-09 48.8 5.2 73 4-86 178-250 (414)
107 pfam03435 Saccharop_dh Sacchar 97.5 0.00016 4.2E-09 49.0 5.0 83 7-94 1-87 (384)
108 PRK13940 glutamyl-tRNA reducta 97.5 0.00021 5.2E-09 48.4 5.2 74 4-86 181-254 (414)
109 PRK08818 prephenate dehydrogen 97.5 0.00028 7E-09 47.6 5.8 146 1-178 1-152 (373)
110 PRK13302 putative L-aspartate 97.5 0.00073 1.9E-08 44.8 8.0 124 4-144 6-131 (271)
111 PRK06436 glycerate dehydrogena 97.5 0.0008 2E-08 44.6 8.1 88 5-111 123-212 (303)
112 KOG2380 consensus 97.5 0.00049 1.2E-08 46.0 6.8 230 1-252 49-339 (480)
113 PRK05086 malate dehydrogenase; 97.4 0.00082 2.1E-08 44.5 7.7 101 5-112 1-122 (312)
114 PRK12814 putative NADPH-depend 97.4 0.0011 2.7E-08 43.8 8.3 123 3-146 192-340 (652)
115 PRK00421 murC UDP-N-acetylmura 97.4 0.00043 1.1E-08 46.3 6.1 48 1-49 5-54 (459)
116 COG1052 LdhA Lactate dehydroge 97.4 0.00071 1.8E-08 44.9 7.0 92 4-111 146-239 (324)
117 PRK08410 2-hydroxyacid dehydro 97.4 0.0007 1.8E-08 44.9 6.9 87 5-110 146-234 (311)
118 pfam07991 IlvN Acetohydroxy ac 97.4 0.00061 1.5E-08 45.3 6.5 93 4-112 4-98 (165)
119 TIGR02853 spore_dpaA dipicolin 97.4 0.00052 1.3E-08 45.8 6.1 89 5-108 153-241 (288)
120 cd01065 NAD_bind_Shikimate_DH 97.4 0.0006 1.5E-08 45.4 6.4 74 4-85 19-92 (155)
121 PRK00258 aroE shikimate 5-dehy 97.4 0.00083 2.1E-08 44.5 7.1 33 139-171 136-168 (275)
122 PRK05225 ketol-acid reductoiso 97.4 0.00027 6.9E-09 47.6 4.6 189 4-220 37-258 (489)
123 PRK12557 H(2)-dependent methyl 97.4 0.00096 2.5E-08 44.0 7.4 89 5-108 1-116 (341)
124 PRK06847 hypothetical protein; 97.3 0.00033 8.3E-09 47.1 4.8 38 1-39 1-38 (375)
125 PRK12809 putative oxidoreducta 97.3 0.00057 1.4E-08 45.5 6.0 129 4-146 310-468 (639)
126 COG0111 SerA Phosphoglycerate 97.3 0.00047 1.2E-08 46.0 5.4 91 5-111 143-236 (324)
127 pfam01118 Semialdhyde_dh Semia 97.3 0.00061 1.6E-08 45.3 6.0 97 6-111 1-100 (121)
128 PRK13243 glyoxylate reductase; 97.3 0.00088 2.2E-08 44.3 6.7 90 5-110 151-242 (333)
129 COG0569 TrkA K+ transport syst 97.3 0.00041 1E-08 46.5 4.9 130 5-173 1-136 (225)
130 PRK12480 D-lactate dehydrogena 97.3 0.0014 3.6E-08 43.0 7.4 89 5-111 147-237 (330)
131 pfam01408 GFO_IDH_MocA Oxidore 97.3 0.0011 2.9E-08 43.6 6.8 91 5-111 1-95 (120)
132 PRK06487 glycerate dehydrogena 97.3 0.0013 3.2E-08 43.3 7.1 85 5-110 149-235 (317)
133 TIGR00112 proC pyrroline-5-car 97.3 0.0026 6.6E-08 41.2 8.7 154 7-180 1-169 (274)
134 PRK06823 ornithine cyclodeamin 97.3 0.001 2.6E-08 43.9 6.5 92 3-106 127-220 (315)
135 COG1023 Gnd Predicted 6-phosph 97.3 0.00068 1.7E-08 45.0 5.6 147 5-171 1-151 (300)
136 cd00757 ThiF_MoeB_HesA_family 97.2 0.00036 9.1E-09 46.8 4.0 102 4-107 21-142 (228)
137 PRK00436 argC N-acetyl-gamma-g 97.2 0.0021 5.4E-08 41.8 7.5 99 4-111 1-102 (345)
138 PRK00257 erythronate-4-phospha 97.2 0.00089 2.3E-08 44.3 5.6 89 4-111 116-210 (379)
139 PRK05442 malate dehydrogenase; 97.2 0.0011 2.7E-08 43.7 6.0 106 1-112 1-134 (325)
140 TIGR01505 tartro_sem_red 2-hyd 97.2 0.0033 8.5E-08 40.5 8.4 251 6-309 1-264 (291)
141 COG4408 Uncharacterized protei 97.2 0.005 1.3E-07 39.4 9.3 297 1-305 1-388 (431)
142 pfam00899 ThiF ThiF family. Th 97.2 0.00042 1.1E-08 46.4 3.7 105 5-111 2-127 (134)
143 PRK13303 L-aspartate dehydroge 97.2 0.0016 4E-08 42.7 6.6 90 4-110 1-94 (265)
144 PRK07589 ornithine cyclodeamin 97.2 0.0028 7.1E-08 41.0 7.9 112 3-125 128-241 (346)
145 cd01487 E1_ThiF_like E1_ThiF_l 97.2 0.00042 1.1E-08 46.4 3.5 102 6-108 1-121 (174)
146 PRK07340 ornithine cyclodeamin 97.1 0.0023 5.9E-08 41.6 7.3 107 3-123 124-231 (304)
147 PRK12475 thiamine/molybdopteri 97.1 0.00042 1.1E-08 46.4 3.5 103 4-108 24-148 (337)
148 PRK07688 thiamine/molybdopteri 97.1 0.0006 1.5E-08 45.4 4.2 103 4-108 24-148 (339)
149 cd01338 MDH_choloroplast_like 97.1 0.0014 3.6E-08 42.9 6.1 103 4-112 2-132 (322)
150 TIGR01771 L-LDH-NAD L-lactate 97.1 0.0018 4.7E-08 42.2 6.5 96 9-111 1-117 (302)
151 PRK13984 putative oxidoreducta 97.1 0.0017 4.3E-08 42.5 6.2 122 4-146 283-435 (604)
152 PRK11790 D-3-phosphoglycerate 97.1 0.0025 6.4E-08 41.3 7.0 89 5-111 152-242 (409)
153 PRK08664 aspartate-semialdehyd 97.1 0.0036 9.2E-08 40.3 7.8 104 1-111 1-110 (350)
154 PRK12409 D-amino acid dehydrog 97.0 0.00098 2.5E-08 44.0 4.6 34 4-38 1-34 (410)
155 PRK05690 molybdopterin biosynt 97.0 0.00069 1.7E-08 45.0 3.8 102 5-108 33-154 (245)
156 PRK07574 formate dehydrogenase 97.0 0.0035 9E-08 40.4 7.3 90 5-111 193-287 (385)
157 PRK13581 D-3-phosphoglycerate 97.0 0.0037 9.5E-08 40.2 7.4 88 5-110 139-230 (524)
158 PRK06932 glycerate dehydrogena 97.0 0.0014 3.6E-08 43.0 5.3 21 130-150 87-108 (314)
159 KOG0069 consensus 97.0 0.002 5E-08 42.0 6.0 91 5-111 163-256 (336)
160 PRK09496 trkA potassium transp 97.0 0.0057 1.4E-07 39.0 8.3 40 5-46 233-272 (455)
161 pfam02254 TrkA_N TrkA-N domain 97.0 0.0018 4.6E-08 42.3 5.5 91 7-108 1-95 (115)
162 cd05297 GH4_alpha_glucosidase_ 97.0 0.0015 3.9E-08 42.8 5.1 165 5-172 1-184 (423)
163 COG0673 MviM Predicted dehydro 97.0 0.004 1E-07 40.0 7.3 93 4-111 3-100 (342)
164 COG4007 Predicted dehydrogenas 97.0 0.0043 1.1E-07 39.8 7.4 159 4-180 1-194 (340)
165 PRK12831 putative oxidoreducta 97.0 0.0017 4.4E-08 42.4 5.3 36 3-39 139-174 (464)
166 PRK08291 ornithine cyclodeamin 96.9 0.0023 5.9E-08 41.6 5.8 94 3-107 131-226 (330)
167 PRK06141 ornithine cyclodeamin 96.9 0.0032 8.1E-08 40.6 6.5 91 3-105 124-216 (313)
168 PRK08618 ornithine cyclodeamin 96.9 0.0038 9.6E-08 40.2 6.8 90 4-105 127-218 (325)
169 PRK06046 alanine dehydrogenase 96.9 0.003 7.6E-08 40.9 6.2 92 3-105 128-220 (326)
170 PRK06407 ornithine cyclodeamin 96.9 0.0035 8.8E-08 40.4 6.5 110 3-124 117-228 (302)
171 COG1712 Predicted dinucleotide 96.9 0.0053 1.3E-07 39.2 7.4 91 5-110 1-93 (255)
172 PRK12771 putative glutamate sy 96.9 0.0034 8.6E-08 40.5 6.4 124 3-147 136-285 (560)
173 PRK08644 thiamine biosynthesis 96.9 0.0012 3.1E-08 43.4 4.0 104 4-108 27-149 (209)
174 pfam02423 OCD_Mu_crystall Orni 96.9 0.0044 1.1E-07 39.7 6.7 93 3-106 128-222 (312)
175 PRK08269 3-hydroxybutyryl-CoA 96.9 0.003 7.7E-08 40.8 5.9 98 15-113 1-120 (311)
176 PRK08762 molybdopterin biosynt 96.9 0.0015 3.7E-08 42.9 4.2 102 5-108 139-260 (379)
177 cd01078 NAD_bind_H4MPT_DH NADP 96.9 0.0037 9.4E-08 40.3 6.3 78 5-88 29-110 (194)
178 cd01483 E1_enzyme_family Super 96.9 0.0014 3.6E-08 42.9 4.1 101 6-108 1-121 (143)
179 pfam01113 DapB_N Dihydrodipico 96.8 0.0051 1.3E-07 39.3 6.9 118 6-140 2-122 (122)
180 PRK08328 hypothetical protein; 96.8 0.00066 1.7E-08 45.1 2.1 102 4-107 27-149 (230)
181 PRK05671 aspartate-semialdehyd 96.8 0.0035 8.8E-08 40.4 5.6 96 1-112 1-101 (336)
182 PRK08605 D-lactate dehydrogena 96.8 0.0039 9.9E-08 40.1 5.8 26 70-95 41-66 (332)
183 PRK12549 shikimate 5-dehydroge 96.7 0.0047 1.2E-07 39.5 6.1 40 5-44 128-167 (284)
184 cd01492 Aos1_SUMO Ubiquitin ac 96.7 0.0061 1.6E-07 38.8 6.7 101 5-107 22-141 (197)
185 pfam10100 DUF2338 Uncharacteri 96.7 0.0028 7E-08 41.1 4.9 296 4-307 1-388 (429)
186 PRK12769 putative oxidoreducta 96.7 0.0014 3.5E-08 43.1 3.3 130 3-146 326-485 (654)
187 PRK12810 gltD glutamate syntha 96.7 0.0059 1.5E-07 38.9 6.3 35 3-38 142-176 (472)
188 PRK09853 putative selenate red 96.7 0.0048 1.2E-07 39.5 5.7 36 3-39 549-584 (1032)
189 PRK05597 molybdopterin biosynt 96.7 0.0033 8.4E-08 40.6 4.9 106 5-112 29-155 (355)
190 COG2344 AT-rich DNA-binding pr 96.7 0.0045 1.2E-07 39.7 5.5 80 2-96 82-168 (211)
191 PRK06598 aspartate-semialdehyd 96.7 0.016 4E-07 36.1 8.3 109 4-127 2-116 (348)
192 PRK13301 putative L-aspartate 96.7 0.0075 1.9E-07 38.3 6.6 90 1-110 1-95 (267)
193 PRK00711 D-amino acid dehydrog 96.7 0.0035 8.9E-08 40.4 4.9 33 5-38 1-33 (416)
194 COG2423 Predicted ornithine cy 96.6 0.0086 2.2E-07 37.8 6.9 111 3-125 129-241 (330)
195 cd01485 E1-1_like Ubiquitin ac 96.6 0.0043 1.1E-07 39.8 5.2 105 5-111 20-149 (198)
196 KOG2653 consensus 96.6 0.0029 7.4E-08 40.9 4.3 151 5-171 7-162 (487)
197 COG0169 AroE Shikimate 5-dehyd 96.6 0.005 1.3E-07 39.4 5.4 75 5-85 127-201 (283)
198 PRK12778 putative bifunctional 96.6 0.0092 2.3E-07 37.7 6.7 124 3-147 438-596 (760)
199 TIGR03315 Se_ygfK putative sel 96.6 0.0057 1.5E-07 39.0 5.6 35 4-39 537-571 (1012)
200 KOG2305 consensus 96.6 0.0043 1.1E-07 39.8 5.0 105 1-107 1-119 (313)
201 cd05296 GH4_P_beta_glucosidase 96.6 0.0026 6.5E-08 41.3 3.8 82 5-88 1-89 (419)
202 PRK05472 redox-sensing transcr 96.6 0.0099 2.5E-07 37.5 6.6 82 2-96 82-168 (211)
203 PRK11749 putative oxidoreducta 96.5 0.012 3E-07 37.0 6.8 36 3-39 139-174 (460)
204 smart00859 Semialdhyde_dh Semi 96.5 0.0061 1.6E-07 38.8 5.2 100 6-111 1-102 (122)
205 cd05298 GH4_GlvA_pagL_like Gly 96.5 0.0061 1.6E-07 38.8 5.2 164 5-173 1-184 (437)
206 PRK07411 hypothetical protein; 96.5 0.0043 1.1E-07 39.8 4.4 106 5-112 39-165 (390)
207 PRK07878 molybdopterin biosynt 96.5 0.0022 5.7E-08 41.7 2.9 106 5-112 43-169 (392)
208 PRK06199 ornithine cyclodeamin 96.5 0.01 2.6E-07 37.4 6.2 96 3-105 154-256 (379)
209 PRK03369 murD UDP-N-acetylmura 96.5 0.0082 2.1E-07 38.0 5.8 44 4-48 12-55 (487)
210 TIGR01318 gltD_gamma_fam gluta 96.5 0.0034 8.8E-08 40.4 3.8 138 3-146 142-309 (480)
211 PRK06728 aspartate-semialdehyd 96.4 0.013 3.2E-07 36.8 6.5 96 1-111 1-102 (347)
212 PRK05600 thiamine biosynthesis 96.4 0.0035 8.9E-08 40.4 3.6 107 4-112 41-168 (370)
213 cd01336 MDH_cytoplasmic_cytoso 96.4 0.0056 1.4E-07 39.1 4.7 104 5-112 3-132 (325)
214 PRK09310 aroDE bifunctional 3- 96.4 0.0091 2.3E-07 37.7 5.7 35 73-107 128-162 (477)
215 CHL00194 ycf39 Ycf39; Provisio 96.4 0.005 1.3E-07 39.4 4.2 73 5-84 1-74 (319)
216 TIGR01850 argC N-acetyl-gamma- 96.3 0.0088 2.2E-07 37.8 5.1 101 5-111 1-108 (361)
217 pfam01262 AlaDh_PNT_C Alanine 96.3 0.01 2.6E-07 37.4 5.4 97 4-108 20-121 (150)
218 PRK07236 hypothetical protein; 96.3 0.0077 2E-07 38.2 4.7 37 1-38 1-39 (386)
219 PRK12749 quinate/shikimate deh 96.3 0.009 2.3E-07 37.7 5.0 29 296-324 256-286 (288)
220 KOG1495 consensus 96.2 0.022 5.7E-07 35.2 6.9 102 4-111 20-140 (332)
221 pfam02056 Glyco_hydro_4 Family 96.2 0.0044 1.1E-07 39.7 3.0 83 6-90 1-89 (183)
222 PRK08163 salicylate hydroxylas 96.2 0.0097 2.5E-07 37.5 4.7 38 1-39 1-38 (396)
223 COG0002 ArgC Acetylglutamate s 96.1 0.013 3.4E-07 36.6 5.4 100 3-111 1-104 (349)
224 PRK01747 mnmC 5-methylaminomet 96.1 0.011 2.8E-07 37.2 4.7 36 4-40 256-291 (660)
225 PRK03659 glutathione-regulated 96.0 0.017 4.3E-07 35.9 5.5 98 5-111 401-501 (602)
226 cd05197 GH4_glycoside_hydrolas 96.0 0.015 3.8E-07 36.3 5.2 85 5-91 1-91 (425)
227 PRK10669 putative cation:proto 96.0 0.03 7.6E-07 34.3 6.6 42 7-49 420-461 (558)
228 PRK06101 short chain dehydroge 96.0 0.029 7.3E-07 34.4 6.4 46 4-50 1-47 (241)
229 PRK06444 prephenate dehydrogen 95.9 0.017 4.4E-07 35.9 5.1 110 6-172 2-114 (197)
230 TIGR01317 GOGAT_sm_gam glutama 95.9 0.013 3.3E-07 36.7 4.4 79 4-85 151-261 (517)
231 PRK03562 glutathione-regulated 95.9 0.018 4.5E-07 35.8 5.0 98 5-111 400-500 (615)
232 PRK02006 murD UDP-N-acetylmura 95.9 0.03 7.6E-07 34.4 6.2 47 3-50 6-54 (501)
233 PRK07102 short chain dehydroge 95.8 0.033 8.3E-07 34.1 6.2 43 4-47 1-44 (243)
234 COG0289 DapB Dihydrodipicolina 95.8 0.022 5.7E-07 35.2 5.2 140 3-170 1-145 (266)
235 COG1486 CelF Alpha-galactosida 95.7 0.014 3.7E-07 36.4 4.1 166 1-172 1-186 (442)
236 pfam05368 NmrA NmrA-like famil 95.7 0.011 2.7E-07 37.3 3.2 71 7-86 1-76 (232)
237 PRK07208 hypothetical protein; 95.7 0.024 6.1E-07 35.0 5.0 35 4-39 3-37 (474)
238 PRK00683 murD UDP-N-acetylmura 95.6 0.013 3.2E-07 36.8 3.5 39 3-42 2-40 (418)
239 PRK05868 hypothetical protein; 95.6 0.02 5E-07 35.5 4.5 35 4-39 1-35 (372)
240 PRK00141 murD UDP-N-acetylmura 95.6 0.026 6.5E-07 34.8 5.0 35 5-40 18-52 (476)
241 PRK07454 short chain dehydroge 95.6 0.056 1.4E-06 32.6 6.6 46 1-47 3-49 (241)
242 PRK06349 homoserine dehydrogen 95.6 0.014 3.5E-07 36.5 3.5 97 1-114 1-110 (432)
243 PRK08773 2-octaprenyl-3-methyl 95.5 0.025 6.3E-07 34.9 4.7 36 1-37 1-38 (392)
244 PRK06180 short chain dehydroge 95.5 0.067 1.7E-06 32.1 6.9 46 1-47 1-47 (277)
245 TIGR01316 gltA glutamate synth 95.5 0.023 5.9E-07 35.1 4.6 173 3-188 141-353 (462)
246 PRK12548 shikimate 5-dehydroge 95.5 0.022 5.6E-07 35.2 4.3 14 307-320 272-285 (289)
247 PRK05562 precorrin-2 dehydroge 95.5 0.081 2.1E-06 31.5 7.2 131 3-150 23-157 (222)
248 pfam01266 DAO FAD dependent ox 95.4 0.024 6.2E-07 34.9 4.4 31 6-37 1-31 (309)
249 PRK11579 putative oxidoreducta 95.4 0.045 1.1E-06 33.2 5.8 93 1-111 1-97 (346)
250 PRK01438 murD UDP-N-acetylmura 95.4 0.06 1.5E-06 32.4 6.4 42 5-47 15-61 (481)
251 TIGR02352 thiamin_ThiO glycine 95.4 0.02 5.1E-07 35.5 3.9 31 7-38 1-31 (357)
252 cd01486 Apg7 Apg7 is an E1-lik 95.4 0.023 5.7E-07 35.1 4.1 104 6-113 1-145 (307)
253 COG0300 DltE Short-chain dehyd 95.4 0.069 1.8E-06 32.0 6.6 46 1-47 3-49 (265)
254 PRK08040 putative semialdehyde 95.3 0.042 1.1E-06 33.4 5.4 110 1-125 1-116 (337)
255 PRK02472 murD UDP-N-acetylmura 95.3 0.071 1.8E-06 31.9 6.5 43 5-48 10-56 (450)
256 PRK06753 hypothetical protein; 95.3 0.025 6.3E-07 34.9 4.1 34 5-39 1-34 (373)
257 cd01489 Uba2_SUMO Ubiquitin ac 95.3 0.07 1.8E-06 31.9 6.4 104 6-111 1-126 (312)
258 PRK06617 2-octaprenyl-6-methox 95.3 0.037 9.3E-07 33.8 4.9 33 4-37 1-33 (374)
259 PRK11259 solA N-methyltryptoph 95.3 0.031 8E-07 34.2 4.6 32 5-37 4-35 (377)
260 PRK08643 acetoin reductase; Va 95.3 0.067 1.7E-06 32.1 6.2 42 4-46 1-44 (256)
261 TIGR02441 fa_ox_alpha_mit fatt 95.3 0.00089 2.3E-08 44.2 -3.4 106 4-111 337-455 (740)
262 COG2910 Putative NADH-flavin r 95.2 0.049 1.2E-06 33.0 5.4 69 5-84 1-72 (211)
263 PRK08223 hypothetical protein; 95.2 0.03 7.7E-07 34.3 4.3 103 4-108 27-151 (287)
264 PRK12384 sorbitol-6-phosphate 95.2 0.074 1.9E-06 31.8 6.2 42 4-46 1-44 (259)
265 COG0665 DadA Glycine/D-amino a 95.2 0.049 1.2E-06 33.0 5.2 37 1-38 1-37 (387)
266 PRK02705 murD UDP-N-acetylmura 95.1 0.056 1.4E-06 32.6 5.5 41 8-49 4-49 (459)
267 PRK03806 murD UDP-N-acetylmura 95.1 0.048 1.2E-06 33.0 5.1 37 1-38 1-39 (438)
268 PRK07045 putative monooxygenas 95.1 0.045 1.1E-06 33.2 4.9 37 1-38 1-38 (388)
269 PRK08017 short chain dehydroge 95.1 0.11 2.7E-06 30.8 6.8 42 6-48 4-46 (256)
270 pfam02629 CoA_binding CoA bind 95.1 0.11 2.9E-06 30.6 6.9 79 3-96 2-84 (96)
271 PRK04663 murD UDP-N-acetylmura 95.0 0.028 7.1E-07 34.5 3.7 33 3-36 6-38 (438)
272 PRK01710 murD UDP-N-acetylmura 95.0 0.087 2.2E-06 31.3 6.2 33 5-38 15-47 (458)
273 PRK04308 murD UDP-N-acetylmura 95.0 0.044 1.1E-06 33.2 4.6 41 5-46 6-48 (445)
274 PRK11863 N-acetyl-gamma-glutam 95.0 0.056 1.4E-06 32.6 5.1 83 1-111 1-84 (314)
275 PRK13512 coenzyme A disulfide 94.9 0.049 1.2E-06 33.0 4.7 36 4-39 1-37 (438)
276 PRK08849 2-octaprenyl-3-methyl 94.9 0.048 1.2E-06 33.0 4.6 34 1-36 1-34 (384)
277 TIGR03364 HpnW_proposed FAD de 94.9 0.041 1E-06 33.4 4.2 32 6-38 2-33 (365)
278 PRK07588 hypothetical protein; 94.8 0.043 1.1E-06 33.3 4.2 34 5-39 1-34 (391)
279 TIGR00507 aroE shikimate 5-deh 94.8 0.06 1.5E-06 32.4 4.9 96 3-106 120-224 (286)
280 PRK12775 putative trifunctiona 94.8 0.045 1.1E-06 33.2 4.1 33 5-38 433-465 (993)
281 PRK02318 mannitol-1-phosphate 94.7 0.23 5.8E-06 28.6 7.6 105 6-111 2-125 (381)
282 PRK07024 short chain dehydroge 94.6 0.19 4.8E-06 29.1 7.1 45 1-48 1-46 (256)
283 PRK07707 consensus 94.6 0.11 2.8E-06 30.7 5.8 43 4-47 1-46 (239)
284 cd01488 Uba3_RUB Ubiquitin act 94.6 0.09 2.3E-06 31.2 5.4 89 6-94 1-108 (291)
285 PRK01368 murD UDP-N-acetylmura 94.6 0.079 2E-06 31.6 5.0 34 1-36 1-36 (450)
286 PRK05653 fabG 3-ketoacyl-(acyl 94.6 0.16 4E-06 29.7 6.5 42 5-47 5-48 (246)
287 PRK11861 bifunctional prephena 94.5 0.033 8.5E-07 34.0 3.0 42 10-52 326-377 (673)
288 PRK12550 shikimate 5-dehydroge 94.4 0.17 4.3E-06 29.5 6.4 25 146-170 143-167 (272)
289 pfam00743 FMO-like Flavin-bind 94.3 0.059 1.5E-06 32.4 3.9 35 5-40 2-36 (532)
290 PRK12746 short chain dehydroge 94.3 0.15 3.7E-06 29.9 5.9 45 1-46 1-49 (254)
291 PRK08020 ubiF 2-octaprenyl-3-m 94.3 0.095 2.4E-06 31.1 4.9 36 1-37 1-37 (391)
292 TIGR03366 HpnZ_proposed putati 94.3 0.11 2.9E-06 30.6 5.3 85 5-96 122-210 (280)
293 PRK08300 acetaldehyde dehydrog 94.3 0.037 9.4E-07 33.7 2.8 93 1-108 1-101 (298)
294 COG1064 AdhP Zn-dependent alco 94.2 0.45 1.1E-05 26.7 8.3 82 4-96 167-251 (339)
295 PRK07326 short chain dehydroge 94.2 0.21 5.3E-06 28.8 6.6 46 1-47 1-48 (235)
296 cd05191 NAD_bind_amino_acid_DH 94.2 0.094 2.4E-06 31.1 4.7 33 4-36 23-55 (86)
297 PRK11728 hypothetical protein; 94.2 0.081 2.1E-06 31.5 4.4 38 4-41 2-40 (400)
298 COG0686 Ald Alanine dehydrogen 94.2 0.055 1.4E-06 32.6 3.5 94 5-108 169-268 (371)
299 PRK01390 murD UDP-N-acetylmura 94.1 0.24 6E-06 28.5 6.7 44 5-49 10-53 (457)
300 PRK07364 2-octaprenyl-6-methox 94.1 0.1 2.6E-06 30.9 4.8 36 1-37 13-49 (413)
301 PRK07494 2-octaprenyl-6-methox 94.1 0.11 2.7E-06 30.8 4.8 37 1-38 1-38 (386)
302 PRK12826 3-ketoacyl-(acyl-carr 94.0 0.23 5.9E-06 28.5 6.5 44 1-45 1-47 (253)
303 PRK08013 hypothetical protein; 94.0 0.11 2.9E-06 30.6 4.9 35 1-37 1-35 (400)
304 PRK06270 homoserine dehydrogen 93.9 0.15 3.9E-06 29.7 5.4 106 1-113 1-130 (342)
305 PRK08251 short chain dehydroge 93.9 0.25 6.4E-06 28.3 6.5 43 4-47 2-45 (248)
306 PRK06912 acoL dihydrolipoamide 93.9 0.52 1.3E-05 26.3 12.8 175 5-185 1-237 (458)
307 PRK08850 2-octaprenyl-6-methox 93.9 0.13 3.4E-06 30.1 5.1 36 1-37 1-36 (405)
308 PRK06370 mercuric reductase; V 93.9 0.53 1.3E-05 26.2 9.7 175 3-185 3-237 (459)
309 PRK06500 short chain dehydroge 93.8 0.28 7.2E-06 28.0 6.6 46 1-47 1-49 (249)
310 PRK08774 consensus 93.7 0.12 3.1E-06 30.4 4.6 36 1-37 1-36 (402)
311 PRK07062 short chain dehydroge 93.7 0.29 7.3E-06 27.9 6.4 40 6-46 9-50 (265)
312 TIGR03219 salicylate_mono sali 93.7 0.11 2.9E-06 30.6 4.4 35 5-39 1-35 (414)
313 COG0654 UbiH 2-polyprenyl-6-me 93.6 0.16 4.1E-06 29.6 5.1 33 4-37 2-34 (387)
314 PRK06719 precorrin-2 dehydroge 93.6 0.21 5.5E-06 28.8 5.7 124 5-148 14-140 (157)
315 cd01484 E1-2_like Ubiquitin ac 93.6 0.068 1.7E-06 32.0 3.0 105 6-112 1-128 (234)
316 PRK08339 short chain dehydroge 93.6 0.28 7.2E-06 28.0 6.2 40 6-46 9-50 (263)
317 COG0136 Asd Aspartate-semialde 93.5 0.36 9.2E-06 27.3 6.7 96 4-111 1-100 (334)
318 TIGR02437 FadB fatty oxidation 93.5 0.045 1.1E-06 33.2 2.0 277 6-317 317-656 (716)
319 PRK06182 short chain dehydroge 93.5 0.32 8.3E-06 27.6 6.4 46 1-48 1-47 (273)
320 PRK08340 glucose-1-dehydrogena 93.5 0.28 7.2E-06 28.0 6.1 41 5-46 1-42 (259)
321 pfam03447 NAD_binding_3 Homose 93.4 0.17 4.3E-06 29.5 4.9 87 11-113 1-94 (116)
322 PRK12743 acetoin dehydrogenase 93.4 0.25 6.3E-06 28.4 5.7 41 4-45 1-44 (253)
323 PRK05717 oxidoreductase; Valid 93.4 0.28 7.2E-06 28.0 6.0 41 6-47 11-53 (255)
324 PRK06475 salicylate hydroxylas 93.4 0.11 2.9E-06 30.5 4.0 33 5-38 3-35 (400)
325 TIGR02355 moeB molybdopterin s 93.4 0.19 4.9E-06 29.1 5.1 188 3-225 23-231 (240)
326 PRK06718 precorrin-2 dehydroge 93.4 0.63 1.6E-05 25.7 7.7 126 4-148 10-140 (202)
327 PRK06200 2,3-dihydroxy-2,3-dih 93.3 0.37 9.4E-06 27.2 6.5 46 1-47 1-49 (263)
328 PRK06126 hypothetical protein; 93.3 0.16 4.1E-06 29.6 4.7 37 1-38 2-40 (545)
329 PRK04690 murD UDP-N-acetylmura 93.3 0.2 5.2E-06 28.9 5.2 33 5-37 9-41 (468)
330 KOG2741 consensus 93.3 0.39 1E-05 27.1 6.6 95 3-111 5-105 (351)
331 PRK05993 short chain dehydroge 93.3 0.5 1.3E-05 26.4 7.1 47 1-48 1-48 (277)
332 KOG1298 consensus 93.3 0.12 3E-06 30.5 3.9 32 5-37 46-77 (509)
333 PRK06185 hypothetical protein; 93.3 0.14 3.6E-06 30.0 4.3 37 1-38 3-39 (409)
334 KOG1502 consensus 93.2 0.072 1.8E-06 31.9 2.7 78 4-84 6-88 (327)
335 PRK03803 murD UDP-N-acetylmura 93.2 0.19 4.9E-06 29.1 4.9 42 5-47 8-51 (448)
336 TIGR02354 thiF_fam2 thiamine b 93.2 0.08 2E-06 31.6 2.9 118 4-126 21-163 (200)
337 cd04510 consensus 93.1 0.7 1.8E-05 25.4 7.7 102 5-110 2-130 (334)
338 PRK07538 hypothetical protein; 93.1 0.14 3.7E-06 29.9 4.2 33 5-38 1-33 (413)
339 PRK12779 putative bifunctional 93.1 0.2 5.1E-06 29.0 4.8 33 4-37 306-338 (944)
340 KOG1399 consensus 93.0 0.14 3.5E-06 30.1 3.9 34 4-38 6-39 (448)
341 PRK08277 D-mannonate oxidoredu 93.0 0.37 9.5E-06 27.2 6.2 40 6-46 11-52 (278)
342 PRK09072 short chain dehydroge 93.0 0.44 1.1E-05 26.7 6.5 42 5-47 6-48 (262)
343 PRK10206 putative dehydrogenas 93.0 0.39 9.8E-06 27.1 6.2 91 5-111 3-98 (345)
344 PRK12745 3-ketoacyl-(acyl-carr 93.0 0.36 9.2E-06 27.3 6.0 45 1-46 1-48 (259)
345 pfam01494 FAD_binding_3 FAD bi 92.9 0.14 3.5E-06 30.0 3.9 33 6-39 3-35 (349)
346 PRK05876 short chain dehydroge 92.9 0.43 1.1E-05 26.8 6.4 43 1-44 1-46 (275)
347 PRK13771 putative alcohol dehy 92.9 0.49 1.2E-05 26.5 6.6 39 282-325 285-323 (332)
348 PRK06116 glutathione reductase 92.9 0.76 1.9E-05 25.2 11.0 175 1-186 1-235 (450)
349 TIGR03325 BphB_TodD cis-2,3-di 92.9 0.53 1.4E-05 26.2 6.8 46 1-47 1-48 (262)
350 PRK08945 short chain dehydroge 92.9 0.48 1.2E-05 26.5 6.5 41 5-46 14-55 (245)
351 PRK06483 short chain dehydroge 92.9 0.77 2E-05 25.2 9.3 44 1-47 1-46 (236)
352 PRK07074 short chain dehydroge 92.9 0.41 1.1E-05 26.9 6.2 42 5-47 2-45 (256)
353 cd00755 YgdL_like Family of ac 92.8 0.13 3.2E-06 30.2 3.6 44 4-47 11-54 (231)
354 PRK07041 short chain dehydroge 92.8 0.41 1E-05 27.0 6.1 42 5-47 8-50 (240)
355 TIGR03466 HpnA hopanoid-associ 92.8 0.084 2.1E-06 31.4 2.6 38 5-43 1-39 (328)
356 PRK08703 short chain dehydroge 92.8 0.53 1.4E-05 26.2 6.7 44 1-45 1-47 (239)
357 PRK08267 short chain dehydroge 92.8 0.47 1.2E-05 26.5 6.4 43 4-47 1-44 (258)
358 PRK07479 consensus 92.8 0.49 1.3E-05 26.4 6.5 45 1-46 1-47 (252)
359 PRK05249 soluble pyridine nucl 92.8 0.8 2E-05 25.1 12.9 37 1-38 1-39 (465)
360 PRK06194 hypothetical protein; 92.7 0.49 1.3E-05 26.4 6.4 45 1-46 1-48 (301)
361 COG1233 Phytoene dehydrogenase 92.7 0.28 7.1E-06 28.0 5.2 34 4-38 3-36 (487)
362 KOG0399 consensus 92.7 0.32 8.1E-06 27.6 5.4 76 4-85 1785-1881(2142)
363 PRK06179 short chain dehydroge 92.7 0.31 7.8E-06 27.8 5.3 41 1-42 1-42 (270)
364 COG1648 CysG Siroheme synthase 92.7 0.64 1.6E-05 25.7 6.9 82 5-97 13-95 (210)
365 PRK09126 hypothetical protein; 92.6 0.23 5.9E-06 28.5 4.7 35 1-37 1-35 (392)
366 PRK07097 gluconate 5-dehydroge 92.6 0.54 1.4E-05 26.2 6.5 90 1-112 2-98 (265)
367 pfam00070 Pyr_redox Pyridine n 92.6 0.17 4.2E-06 29.5 3.8 33 6-39 1-33 (82)
368 PRK06482 short chain dehydroge 92.5 0.54 1.4E-05 26.1 6.4 44 4-48 1-46 (276)
369 PRK07231 fabG 3-ketoacyl-(acyl 92.5 0.55 1.4E-05 26.1 6.5 42 5-47 6-49 (250)
370 TIGR02371 ala_DH_arch alanine 92.5 0.37 9.5E-06 27.2 5.6 75 2-85 127-205 (327)
371 cd01075 NAD_bind_Leu_Phe_Val_D 92.5 0.64 1.6E-05 25.7 6.8 67 5-85 29-96 (200)
372 PRK12824 acetoacetyl-CoA reduc 92.5 0.41 1E-05 26.9 5.8 36 4-40 1-38 (245)
373 PRK07775 short chain dehydroge 92.5 0.41 1E-05 26.9 5.7 41 5-46 10-52 (275)
374 PRK07233 hypothetical protein; 92.4 0.21 5.4E-06 28.8 4.3 32 6-38 1-32 (430)
375 PRK08085 gluconate 5-dehydroge 92.4 0.54 1.4E-05 26.1 6.3 45 1-46 1-51 (254)
376 PRK09424 pntA NAD(P) transhydr 92.4 0.87 2.2E-05 24.8 7.4 101 4-108 165-285 (510)
377 TIGR01377 soxA_mon sarcosine o 92.4 0.2 5E-06 29.0 4.0 28 7-35 3-30 (401)
378 PRK07677 short chain dehydroge 92.4 0.51 1.3E-05 26.3 6.2 41 6-47 4-46 (254)
379 COG1063 Tdh Threonine dehydrog 92.4 0.64 1.6E-05 25.7 6.6 87 6-102 171-263 (350)
380 PRK05872 short chain dehydroge 92.3 0.6 1.5E-05 25.9 6.4 41 6-47 10-52 (296)
381 PRK00811 spermidine synthase; 92.3 0.91 2.3E-05 24.7 7.5 99 2-107 77-192 (283)
382 TIGR01921 DAP-DH diaminopimela 92.2 0.25 6.3E-06 28.4 4.3 149 1-167 1-185 (326)
383 cd05212 NAD_bind_m-THF_DH_Cycl 92.2 0.3 7.5E-06 27.9 4.7 70 5-107 29-99 (140)
384 TIGR03206 benzo_BadH 2-hydroxy 92.2 0.5 1.3E-05 26.4 5.9 40 6-46 4-45 (250)
385 PRK09880 L-idonate 5-dehydroge 92.2 0.47 1.2E-05 26.5 5.7 12 242-253 234-245 (343)
386 PRK05693 short chain dehydroge 92.1 0.78 2E-05 25.1 6.8 44 4-48 1-45 (274)
387 PRK07478 short chain dehydroge 92.1 0.68 1.7E-05 25.5 6.5 45 1-46 1-48 (254)
388 TIGR01415 trpB_rel pyridoxal-p 92.0 0.17 4.2E-06 29.5 3.3 147 10-159 127-291 (426)
389 PRK06914 short chain dehydroge 92.0 0.58 1.5E-05 26.0 6.1 45 1-47 1-46 (280)
390 PRK06953 short chain dehydroge 92.0 0.67 1.7E-05 25.6 6.4 44 4-48 1-45 (222)
391 PRK08263 short chain dehydroge 92.0 0.61 1.6E-05 25.8 6.1 42 5-47 3-46 (275)
392 PRK05786 fabG 3-ketoacyl-(acyl 92.0 0.76 1.9E-05 25.2 6.6 42 5-47 6-48 (238)
393 COG4221 Short-chain alcohol de 91.9 0.65 1.7E-05 25.7 6.2 46 1-47 1-49 (246)
394 PRK08217 fabG 3-ketoacyl-(acyl 91.9 0.74 1.9E-05 25.3 6.5 41 5-46 6-47 (253)
395 pfam02882 THF_DHG_CYH_C Tetrah 91.9 0.38 9.8E-06 27.1 5.0 83 5-122 37-121 (159)
396 PRK12825 fabG 3-ketoacyl-(acyl 91.8 0.79 2E-05 25.1 6.5 44 1-45 2-49 (250)
397 TIGR02734 crtI_fam phytoene de 91.8 0.25 6.5E-06 28.3 4.0 32 7-39 1-32 (526)
398 TIGR03385 CoA_CoA_reduc CoA-di 91.7 0.44 1.1E-05 26.8 5.2 33 4-37 137-169 (427)
399 COG1249 Lpd Pyruvate/2-oxoglut 91.7 0.79 2E-05 25.1 6.5 181 1-187 1-242 (454)
400 PRK09135 pteridine reductase; 91.7 0.69 1.8E-05 25.5 6.1 44 1-45 2-48 (249)
401 PRK06346 consensus 91.7 0.81 2.1E-05 25.0 6.5 41 5-46 5-47 (251)
402 PRK08862 short chain dehydroge 91.6 0.96 2.4E-05 24.5 6.8 41 5-46 6-47 (227)
403 pfam08546 ApbA_C Ketopantoate 91.6 0.98 2.5E-05 24.5 6.9 91 209-310 33-123 (125)
404 PRK07776 consensus 91.6 0.88 2.2E-05 24.8 6.6 41 6-47 9-51 (252)
405 PRK11908 NAD-dependent epimera 91.6 0.32 8.1E-06 27.7 4.3 40 4-43 1-41 (347)
406 KOG0685 consensus 91.6 0.44 1.1E-05 26.8 5.0 32 4-35 21-52 (498)
407 TIGR02053 MerA mercuric reduct 91.5 0.18 4.7E-06 29.2 3.1 32 4-36 181-212 (494)
408 PRK06947 glucose-1-dehydrogena 91.5 0.81 2.1E-05 25.0 6.4 45 1-46 1-49 (252)
409 PRK09291 short chain dehydroge 91.5 0.72 1.8E-05 25.4 6.1 42 5-47 3-45 (257)
410 PRK13748 putative mercuric red 91.5 0.87 2.2E-05 24.8 6.5 178 5-188 99-339 (561)
411 PRK09134 short chain dehydroge 91.4 0.82 2.1E-05 25.0 6.3 45 1-46 6-52 (256)
412 PRK06181 short chain dehydroge 91.4 0.63 1.6E-05 25.7 5.7 41 6-47 3-44 (263)
413 PRK08243 4-hydroxybenzoate 3-m 91.4 0.4 1E-05 27.0 4.7 34 1-37 1-34 (392)
414 PRK06123 short chain dehydroge 91.4 0.75 1.9E-05 25.3 6.1 43 1-46 1-46 (249)
415 PRK06184 hypothetical protein; 91.4 0.45 1.1E-05 26.7 4.9 37 1-38 1-39 (503)
416 COG0562 Glf UDP-galactopyranos 91.3 0.4 1E-05 27.0 4.6 35 4-39 1-35 (374)
417 PRK05650 short chain dehydroge 91.3 0.79 2E-05 25.1 6.1 42 5-47 1-43 (270)
418 PRK07608 hypothetical protein; 91.3 0.39 9.9E-06 27.1 4.5 32 5-37 6-37 (389)
419 PTZ00052 thioredoxin reductase 91.3 0.9 2.3E-05 24.7 6.4 57 130-186 223-289 (541)
420 COG0771 MurD UDP-N-acetylmuram 91.3 0.21 5.4E-06 28.8 3.2 36 4-40 7-42 (448)
421 PRK08306 dipicolinate synthase 91.3 0.62 1.6E-05 25.8 5.5 89 5-108 153-241 (296)
422 PRK07814 short chain dehydroge 91.2 0.73 1.9E-05 25.3 5.9 42 5-47 10-53 (263)
423 PRK07774 short chain dehydroge 91.2 0.91 2.3E-05 24.7 6.4 41 5-46 6-48 (250)
424 TIGR02440 FadJ fatty oxidation 91.2 0.15 3.8E-06 29.8 2.3 108 3-111 306-426 (732)
425 PRK12828 short chain dehydroge 91.2 0.96 2.5E-05 24.5 6.4 42 5-47 7-50 (239)
426 PRK07190 hypothetical protein; 91.1 0.41 1.1E-05 26.9 4.5 37 1-38 1-38 (480)
427 PRK06949 short chain dehydroge 91.1 0.83 2.1E-05 24.9 6.0 41 5-46 10-51 (258)
428 PRK12770 putative glutamate sy 91.0 0.51 1.3E-05 26.3 4.9 34 3-37 16-49 (350)
429 PRK12939 short chain dehydroge 91.0 1 2.6E-05 24.4 6.4 41 5-46 7-49 (250)
430 KOG0029 consensus 91.0 0.47 1.2E-05 26.6 4.7 31 4-35 15-45 (501)
431 PRK07825 short chain dehydroge 91.0 0.79 2E-05 25.1 5.9 83 5-112 6-89 (273)
432 TIGR02360 pbenz_hydroxyl 4-hyd 91.0 0.56 1.4E-05 26.1 5.1 37 1-39 1-37 (393)
433 PRK13234 nifH nitrogenase redu 90.9 0.4 1E-05 27.0 4.3 39 1-40 1-44 (293)
434 COG0493 GltD NADPH-dependent g 90.9 0.27 6.9E-06 28.1 3.4 33 5-38 124-156 (457)
435 PRK06153 hypothetical protein; 90.9 0.27 6.9E-06 28.1 3.4 108 5-116 177-306 (393)
436 PRK03612 spermidine synthase; 90.8 1.3 3.3E-05 23.7 8.0 102 3-105 293-408 (516)
437 PRK07666 fabG 3-ketoacyl-(acyl 90.7 0.87 2.2E-05 24.8 5.9 41 5-46 7-48 (238)
438 PRK12937 short chain dehydroge 90.6 0.92 2.4E-05 24.7 5.9 45 1-46 1-48 (245)
439 pfam00743 FMO-like Flavin-bind 90.6 0.35 8.8E-06 27.4 3.7 33 5-38 184-216 (532)
440 PRK06124 gluconate 5-dehydroge 90.6 0.9 2.3E-05 24.7 5.8 40 6-46 15-56 (259)
441 PRK09564 coenzyme A disulfide 90.5 0.55 1.4E-05 26.1 4.7 57 130-186 150-218 (443)
442 PRK08324 short chain dehydroge 90.5 0.81 2.1E-05 25.0 5.6 40 131-171 422-467 (676)
443 TIGR03452 mycothione_red mycot 90.5 0.48 1.2E-05 26.5 4.4 58 127-186 168-236 (452)
444 PRK06113 7-alpha-hydroxysteroi 90.4 1.2 3.1E-05 23.8 6.4 42 5-47 11-54 (255)
445 PRK06940 short chain dehydroge 90.4 1 2.7E-05 24.3 6.1 40 5-46 5-45 (277)
446 PRK07818 dihydrolipoamide dehy 90.4 1.4 3.6E-05 23.4 13.5 175 1-186 1-240 (467)
447 PRK06834 hypothetical protein; 90.4 0.59 1.5E-05 25.9 4.8 35 1-37 1-35 (488)
448 PRK11101 glpA sn-glycerol-3-ph 90.4 0.59 1.5E-05 25.9 4.8 31 6-37 7-37 (545)
449 PRK04965 nitric oxide reductas 90.3 0.39 1E-05 27.1 3.8 36 1-38 1-37 (378)
450 PRK07063 short chain dehydroge 90.3 1.2 3.1E-05 23.9 6.3 44 1-45 2-48 (259)
451 PRK05866 short chain dehydroge 90.3 0.94 2.4E-05 24.6 5.7 41 5-46 41-82 (290)
452 TIGR01724 hmd_rel coenzyme F42 90.3 1 2.6E-05 24.4 5.9 188 6-209 2-223 (341)
453 PRK05884 short chain dehydroge 90.3 1.3 3.4E-05 23.6 6.5 42 5-47 1-43 (223)
454 PRK13789 phosphoribosylamine-- 90.3 1.5 3.7E-05 23.4 8.3 166 1-188 1-200 (426)
455 PRK10538 3-hydroxy acid dehydr 90.2 1.2 3E-05 24.0 6.2 40 7-47 3-43 (248)
456 COG0579 Predicted dehydrogenas 90.2 0.41 1.1E-05 26.9 3.9 39 4-42 3-42 (429)
457 PRK07035 short chain dehydroge 90.2 1.3 3.4E-05 23.7 6.5 40 6-46 9-50 (252)
458 COG3349 Uncharacterized conser 90.2 0.53 1.4E-05 26.2 4.4 34 5-39 1-34 (485)
459 PRK05565 fabG 3-ketoacyl-(acyl 90.2 1.2 3E-05 24.0 6.2 45 1-46 1-48 (247)
460 PRK11883 protoporphyrinogen ox 90.2 0.65 1.7E-05 25.6 4.9 34 5-38 1-35 (452)
461 PRK08213 gluconate 5-dehydroge 90.2 1 2.6E-05 24.3 5.9 40 6-46 13-54 (259)
462 TIGR03215 ac_ald_DH_ac acetald 90.1 0.6 1.5E-05 25.9 4.6 89 5-108 2-95 (285)
463 PRK08265 short chain dehydroge 90.1 1.5 3.8E-05 23.3 10.5 46 1-47 1-49 (261)
464 PRK12829 short chain dehydroge 90.0 1.4 3.7E-05 23.4 6.5 41 6-47 12-54 (264)
465 TIGR02992 ectoine_eutC ectoine 90.0 0.13 3.2E-06 30.3 1.1 89 5-105 130-221 (326)
466 PRK07523 gluconate 5-dehydroge 90.0 1.1 2.9E-05 24.1 5.9 41 6-47 10-52 (251)
467 PRK05714 2-octaprenyl-3-methyl 89.9 0.57 1.4E-05 26.0 4.4 33 5-38 3-35 (405)
468 PRK07846 mycothione/glutathion 89.9 0.52 1.3E-05 26.3 4.2 53 127-181 167-230 (453)
469 PRK08219 short chain dehydroge 89.9 1.2 2.9E-05 24.0 5.9 43 3-47 2-45 (226)
470 cd01080 NAD_bind_m-THF_DH_Cycl 89.9 0.66 1.7E-05 25.6 4.7 83 5-122 45-132 (168)
471 PRK07251 pyridine nucleotide-d 89.8 0.6 1.5E-05 25.9 4.4 36 1-38 1-36 (438)
472 PRK07109 short chain dehydroge 89.8 1.4 3.6E-05 23.5 6.3 40 6-46 10-50 (338)
473 PRK09242 tropinone reductase; 89.8 1.2 2.9E-05 24.0 5.9 41 5-46 11-52 (258)
474 pfam01564 Spermine_synth Sperm 89.7 1.6 4.1E-05 23.1 7.6 134 2-142 74-225 (240)
475 COG3967 DltE Short-chain dehyd 89.7 1.6 4.1E-05 23.1 9.3 88 1-113 1-90 (245)
476 PRK09330 cell division protein 89.7 1.6 4.1E-05 23.1 7.6 61 4-65 12-72 (387)
477 PRK06139 short chain dehydroge 89.6 1.3 3.4E-05 23.6 6.1 46 1-47 1-49 (324)
478 TIGR03589 PseB UDP-N-acetylglu 89.6 0.37 9.4E-06 27.2 3.2 47 1-47 1-49 (324)
479 KOG0068 consensus 89.6 1.3 3.2E-05 23.8 5.9 90 5-111 147-239 (406)
480 PRK08220 2,3-dihydroxybenzoate 89.6 1.3 3.2E-05 23.8 5.9 40 1-41 1-45 (253)
481 COG5322 Predicted dehydrogenas 89.6 0.35 8.8E-06 27.4 3.0 77 4-87 167-244 (351)
482 COG2072 TrkA Predicted flavopr 89.5 0.73 1.9E-05 25.3 4.7 39 2-40 6-44 (443)
483 PRK07576 short chain dehydroge 89.5 1.5 3.7E-05 23.3 6.2 39 6-45 9-49 (260)
484 PRK07845 flavoprotein disulfid 89.5 1.7 4.2E-05 23.0 12.7 57 130-186 179-246 (467)
485 PRK13512 coenzyme A disulfide 89.5 0.73 1.9E-05 25.3 4.7 33 4-37 148-180 (438)
486 PRK08374 homoserine dehydrogen 89.5 0.53 1.3E-05 26.2 3.9 103 5-112 3-119 (316)
487 PRK06125 short chain dehydroge 89.5 1.6 4.1E-05 23.1 6.4 42 5-47 8-50 (259)
488 PRK06138 short chain dehydroge 89.5 1.6 4.1E-05 23.1 6.4 42 5-47 5-48 (252)
489 cd02201 FtsZ_type1 FtsZ is a G 89.4 1.7 4.3E-05 22.9 7.1 210 5-252 1-220 (304)
490 PRK12429 3-hydroxybutyrate deh 89.4 1.7 4.3E-05 22.9 7.1 43 3-46 3-46 (258)
491 PRK09754 phenylpropionate diox 89.3 0.61 1.5E-05 25.8 4.2 37 1-38 1-38 (400)
492 PRK08177 short chain dehydroge 89.3 1.3 3.3E-05 23.7 5.9 41 5-46 2-43 (225)
493 PRK05875 short chain dehydroge 89.3 1.6 4.2E-05 23.0 6.4 40 5-45 8-48 (277)
494 cd02191 FtsZ FtsZ is a GTPase 89.3 1.7 4.4E-05 22.9 7.0 215 5-258 1-224 (303)
495 PRK05867 short chain dehydroge 89.3 1.3 3.4E-05 23.6 5.8 40 6-46 10-51 (253)
496 PRK06116 glutathione reductase 89.3 0.7 1.8E-05 25.4 4.4 32 5-37 168-199 (450)
497 PRK06841 short chain dehydroge 89.2 1.5 3.9E-05 23.2 6.1 40 6-46 16-57 (255)
498 TIGR00031 UDP-GALP_mutase UDP- 89.2 0.6 1.5E-05 25.9 4.1 36 4-40 1-37 (390)
499 KOG2614 consensus 89.2 0.73 1.9E-05 25.3 4.5 36 3-39 1-36 (420)
500 PRK10309 galactitol-1-phosphat 89.0 1.8 4.6E-05 22.8 6.6 44 5-48 162-205 (347)
No 1
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=719.09 Aligned_cols=326 Identities=33% Similarity=0.550 Sum_probs=314.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCC-CCCCCCEEEEECH-HHHHHHHHHH
Q ss_conf 8887799977887899999999977998189994498999999977898422798-8178743897316-8775555441
Q gi|254781039|r 2 KNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPG-IKLSPLLNFSSDH-TLLQNADIVL 79 (329)
Q Consensus 2 ~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~-i~l~~~i~~t~~~-~~l~~adiIi 79 (329)
+++.||+|||+|+||||||.+|++|+ |.|. |.|+++.++.|++.|+|++|||+ ++||++++++++. ++++++|+|+
T Consensus 4 ~k~~KI~ViGaGawGTALA~~la~n~-~~v~-w~r~~~~~~~In~~~~N~kyL~~~i~Lp~~i~~t~dl~~a~~~adiii 81 (340)
T PRK12439 4 KREPKVVVLGGGSWGTTVASICARRG-PTLQ-WVRSEETAKDINDNHRNSRYLGNDVVLSDTLRATTDFTEAANCADVVV 81 (340)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEEE
T ss_conf 78992899896999999999999589-9899-968999999999828887689987558987289789999982699899
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCHH
Q ss_conf 12217776665555332035685055237520002585431012332100121001288817899876532124677317
Q gi|254781039|r 80 FATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNI 159 (329)
Q Consensus 80 iavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~ 159 (329)
+||||+++++++++++++++++.++|+|+||||+++++++||++++.+|.+++++|||||||.||++++||++++||.|.
T Consensus 82 ~avPS~~~r~~~~~l~~~l~~~~~iv~~sKGie~~t~~~~seii~e~l~~~~~~vLSGPsfA~Eva~~~pta~viAs~~~ 161 (340)
T PRK12439 82 MGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPDQ 161 (340)
T ss_pred EECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEECCCH
T ss_conf 93680899999999986557887599732750279998799999987579970686387449999708985136646888
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 89999997534111389973886144440002567788997521100380578999999899999999872254455320
Q gi|254781039|r 160 DISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILR 239 (329)
Q Consensus 160 ~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t~~g 239 (329)
+.++.++++|+++|||+|+|+|++|||+|||+|||||||+||+||+++|+|++|||||||++||.+|++++|++++||+|
T Consensus 162 ~~a~~l~~lf~~~~frvy~s~DviGvElgGAlKNViAIaaGi~dGl~~G~Na~aalitrgl~Em~rl~~~~G~~~~T~~G 241 (340)
T PRK12439 162 HLATRLSALFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRALVIARALREMTKLGVAMGGHRETFPG 241 (340)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999858687799974770443687999999999999981458998889999999999999999971999666555
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCH---HCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 023210157764477530067877508907025---72960031999999999999828987159999999807899899
Q gi|254781039|r 240 LSGVGDLILTATSEQSRNFCFGIALGRGEKQNP---DQIQLVEGAIAVSCVINISKKMGLKLPIFQAISDVMMNHISVDE 316 (329)
Q Consensus 240 laG~GDl~~T~~s~~SRN~~~G~~lg~g~~~~~---~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~il~~~~~~~~ 316 (329)
|||+|||++||+|++||||+||++||+|++.++ ++.+++||++|++.+++++++++++|||+++||+||+++.+|++
T Consensus 242 LaG~GDLilTc~s~~SRN~~~G~~lg~G~~~~~~~~~~~~v~EG~~t~~~~~~la~~~~v~~PI~~~vy~vl~~~~~~~~ 321 (340)
T PRK12439 242 LAGLGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVIMEFANEFGLNMPIAREVDAVINHGSTVEQ 321 (340)
T ss_pred CCCHHHHHEECCCCCCCHHHHHHHHHCCCCHHHHHHHCCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHH
T ss_conf 53654224024689982179999984899899999866998642999999999999839998789999999909799999
Q ss_pred HHHHHHCCCCCCC
Q ss_conf 9999848898789
Q gi|254781039|r 317 ALSILLNHSSEEQ 329 (329)
Q Consensus 317 ~i~~L~~~~~~~e 329 (329)
+++.||.|++|+|
T Consensus 322 a~~~Lm~r~~~~E 334 (340)
T PRK12439 322 AYRGLIAEVPGHE 334 (340)
T ss_pred HHHHHHCCCCCCC
T ss_conf 9999858999732
No 2
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=0 Score=718.93 Aligned_cols=325 Identities=42% Similarity=0.671 Sum_probs=315.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHCCC
Q ss_conf 877999778878999999999779981899944989999999778984227988178743897316-8775555441122
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDH-TLLQNADIVLFAT 82 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~-~~l~~adiIiiav 82 (329)
|++|+|||+|+||||||..|++|| |+|++|+||++.+++|+++|+|++|||++.||+++++++|. ++++++|+|+++|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~av 79 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAV 79 (329)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEC
T ss_conf 961899817837999999999669-8469996289999999734767010599628863222468999972299999978
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 17776665555332035685055237520002585431012332100121001288817899876532124677317899
Q gi|254781039|r 83 SSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNIDIS 162 (329)
Q Consensus 83 ps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~~~~ 162 (329)
||++++++++++++++++++++++|+||||+++++++||++++.+|..++++|||||||+||++++||++++||+|.+.+
T Consensus 80 Ps~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a 159 (329)
T COG0240 80 PSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAA 159 (329)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCEEEEECCCHHHH
T ss_conf 75789999998764336787499974465588765199999997399818999786079998668981799952899999
Q ss_pred HHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
Q ss_conf 99997534111389973886144440002567788997521100380578999999899999999872254455320023
Q gi|254781039|r 163 RRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILRLSG 242 (329)
Q Consensus 163 ~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t~~glaG 242 (329)
++++++|++++||+|+++|++|||+||||||||||||||+||+++|+|+||||+|||++||.||++++|++|+||+||+|
T Consensus 160 ~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsG 239 (329)
T COG0240 160 EKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSG 239 (329)
T ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 99999847996799704751355898999999999989998864574379999996799999999996899620205554
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCC---HHCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 21015776447753006787750890702---572960031999999999999828987159999999807899899999
Q gi|254781039|r 243 VGDLILTATSEQSRNFCFGIALGRGEKQN---PDQIQLVEGAIAVSCVINISKKMGLKLPIFQAISDVMMNHISVDEALS 319 (329)
Q Consensus 243 ~GDl~~T~~s~~SRN~~~G~~lg~g~~~~---~~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~il~~~~~~~~~i~ 319 (329)
+|||++||+|++||||+||..||+|++.. ...++++||++|++.+++++++++++|||+++||+||+++++|+++++
T Consensus 240 lGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~~~~~~~~~~~ 319 (329)
T COG0240 240 LGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLYEGLDPKEAIE 319 (329)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHCCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 30236762787663189999996789889999856973200889999999999849998789999999947999999999
Q ss_pred HHHCCCCCCC
Q ss_conf 9848898789
Q gi|254781039|r 320 ILLNHSSEEQ 329 (329)
Q Consensus 320 ~L~~~~~~~e 329 (329)
.||.|+.|.|
T Consensus 320 ~L~~r~~k~E 329 (329)
T COG0240 320 ELMGRDLKPE 329 (329)
T ss_pred HHHCCCCCCC
T ss_conf 9965665799
No 3
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=0 Score=711.05 Aligned_cols=320 Identities=40% Similarity=0.674 Sum_probs=310.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731-68775555441122
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLFAT 82 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIiiav 82 (329)
|+||+|||+|+||||||.+|++|+ |+|++|+||++.++.||++|+|++|||+++||++|++++| .++++++|+||+|+
T Consensus 1 MmkI~ViGaGawGtAlA~~la~n~-~~V~lw~r~~~~~~~In~~~~n~~ylp~i~L~~nI~~t~dl~~~l~~ad~iiiav 79 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAILLARNG-HDVVLWGRDPEHAAEINTDRENPRYLPGIKLPDNLRATSDLAEALADADLILVAV 79 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEEEEEC
T ss_conf 988999898999999999999789-9789998389999999964988656897858998389789999983798499945
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHH-CCCEECCCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 17776665555332035685055237520002585431012332100-12100128881789987653212467731789
Q gi|254781039|r 83 SSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPS-HSISVLSGPGFARDIAQGLPVGVILSSKNIDI 161 (329)
Q Consensus 83 ps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~-~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~~~ 161 (329)
||++++++++++++++++++++|+|+||||+++++++||++++.++. .++++|+|||||.||++++||++++||+|.+.
T Consensus 80 Ps~~~~~~l~~i~~~i~~~~~li~~tKGle~~t~~~~seii~~~l~~~~~~~~lsGP~~A~Eva~~~pt~~vias~~~~~ 159 (325)
T PRK00094 80 PSHAFREVLKQLKPLLRPDAPIVWATKGIEAGTGKLLSEVAEEELPDQAPLAVLSGPSFAKEVAQGLPTALVIASTDEEL 159 (325)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCHHH
T ss_conf 76999999999986468997499976556248875199999997399986799817742999980898399950799999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
Q ss_conf 99999753411138997388614444000256778899752110038057899999989999999987225445532002
Q gi|254781039|r 162 SRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILRLS 241 (329)
Q Consensus 162 ~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t~~gla 241 (329)
++.++++|+++|||+|.++|++|||+|||||||||||+||+||+++|+|++|||+|||++||.+|++++|++++||+|||
T Consensus 160 ~~~~~~lf~~~~frv~~s~D~iGvEl~galKNi~AIa~Gi~~gl~~G~N~~aalitrg~~Em~~l~~~~g~~~~T~~gla 239 (325)
T PRK00094 160 AKEVQQLFHSPTFRVYTNDDVIGVELGGALKNVIAIAAGISDGLGLGDNARAALITRGLAEMTRLGVALGANPETFLGLA 239 (325)
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999996799747996487004157899989999999999771699018999999999999999999589834422563
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCH---HCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 3210157764477530067877508907025---7296003199999999999982898715999999980789989999
Q gi|254781039|r 242 GVGDLILTATSEQSRNFCFGIALGRGEKQNP---DQIQLVEGAIAVSCVINISKKMGLKLPIFQAISDVMMNHISVDEAL 318 (329)
Q Consensus 242 G~GDl~~T~~s~~SRN~~~G~~lg~g~~~~~---~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~il~~~~~~~~~i 318 (329)
|+|||++||+|++||||+||++||+|++.++ +..+++||++|++.++++++++++++||++++|+||+++.+|++++
T Consensus 240 G~GDL~lTc~s~~SRN~~~G~~lg~g~~~~~~~~~~~~~~EG~~t~~~v~~l~~~~~i~~Pi~~~vy~il~~~~~p~~~i 319 (325)
T PRK00094 240 GLGDLILTCTSPLSRNRRFGLALGQGKSLEDALEEIGQVAEGVRTAKAVYELAKRLGVEMPITEAVYAVLYEGKDPKEAI 319 (325)
T ss_pred CHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf 07632533378899728999999579999999997599701299999999999981999878999999990969999999
Q ss_pred HHHHCC
Q ss_conf 998488
Q gi|254781039|r 319 SILLNH 324 (329)
Q Consensus 319 ~~L~~~ 324 (329)
+.||+|
T Consensus 320 ~~Lm~R 325 (325)
T PRK00094 320 EALLGR 325 (325)
T ss_pred HHHHCC
T ss_conf 998476
No 4
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=100.00 E-value=0 Score=667.69 Aligned_cols=313 Identities=31% Similarity=0.444 Sum_probs=291.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-------CCEEEEEECCHH-----HHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHH
Q ss_conf 7999778878999999999779-------981899944989-----99999977898422798817874389731-6877
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRG-------LANVTLLGRKEI-----LMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLL 72 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g-------~~~V~l~~r~~~-----~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l 72 (329)
||+|||+|+||||||.+|++|| .|+|.+|.|+++ ..+.||+.|+|++|||+++||+++++++| .+++
T Consensus 1 KI~ViGaGawGTALA~~La~ng~~~~~~~~~~V~lw~r~~~~~~~~~~~~in~~~~N~~yLp~i~Lp~~i~~t~dl~~~~ 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHH
T ss_conf 98998779999999999997488654557863799972322100468999974496867798784898608966899998
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC--CCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHH
Q ss_conf 5555441122177766655553320356850552375200025--85431012332100121001288817899876532
Q gi|254781039|r 73 QNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNS--GMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPV 150 (329)
Q Consensus 73 ~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t--~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt 150 (329)
+++|+|++|+||++++++++++++++++++++|+|+||||..+ .+++||++++.++ .++++|||||||.||++++||
T Consensus 81 ~~ad~ii~avPs~~~r~~~~~l~~~l~~~~~ii~~sKGle~~~~~~~~~seii~e~~~-~~~~vLsGPs~A~EVa~~~pt 159 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELG-IPCGVLSGANLANEVAKEKFS 159 (342)
T ss_pred HCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCHHHHHHHHHC-CCEEEEECCCCHHHHHCCCCC
T ss_conf 3698899966869999999999854588873898423444369983119999999859-986997277638998638886
Q ss_pred HCCCCCCH----HHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 12467731----78999999753411138997388614444000256778899752110038057899999989999999
Q gi|254781039|r 151 GVILSSKN----IDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKL 226 (329)
Q Consensus 151 ~~~ia~~d----~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l 226 (329)
++++|+.| .+.++.++++|+++|||+|+|+|++|||+|||+|||||||+||+||+++|+|++|||+|||++||.+|
T Consensus 160 ~~~vA~~~~~~~~~~a~~i~~lf~~~~frvy~s~DviGvEl~GAlKNViAIa~Gi~~Gl~~G~Na~aalitrgl~Em~~l 239 (342)
T TIGR03376 160 ETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKF 239 (342)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 43898437412499999999997899769997476135578899999999998787244798048999999999999999
Q ss_pred HHHH--CCCHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHC-CCCCCH---H--CCCEECHHHHHHHHHHHHHHCCC--
Q ss_conf 9872--254455320023210157764477530067877508-907025---7--29600319999999999998289--
Q gi|254781039|r 227 TEAM--NGRADTILRLSGVGDLILTATSEQSRNFCFGIALGR-GEKQNP---D--QIQLVEGAIAVSCVINISKKMGL-- 296 (329)
Q Consensus 227 ~~~~--g~~~~t~~glaG~GDl~~T~~s~~SRN~~~G~~lg~-g~~~~~---~--~~~~vEG~~~~~~i~~l~~~~~~-- 296 (329)
++++ +++++||+||||+|||++||+| ||||+||++||+ |.+.++ . ..+++||++|++.++++++++++
T Consensus 240 ~~~lg~~~~~~T~~glaG~GDL~~Tc~s--SRN~~~G~~lgk~G~~~~~~~~~~~~~~~~EG~~t~~~v~~l~~~~~i~~ 317 (342)
T TIGR03376 240 ARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKDD 317 (342)
T ss_pred HHHHCCCCCCCHHCCCCCHHHHEEEEEC--CCCHHHHHHHHHCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCC
T ss_conf 9997478972122057413351364206--87589999986659989999988756978600999999999999749988
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 8715999999980789989999998
Q gi|254781039|r 297 KLPIFQAISDVMMNHISVDEALSIL 321 (329)
Q Consensus 297 ~~Pi~~~v~~il~~~~~~~~~i~~L 321 (329)
+|||+++||+|||++++|+++++.|
T Consensus 318 e~PI~~~vy~il~~~~~p~~~i~~L 342 (342)
T TIGR03376 318 EFPLFEAVYQILYEGLPPKKLPECL 342 (342)
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 8888999999993979999999609
No 5
>KOG2711 consensus
Probab=100.00 E-value=0 Score=520.61 Aligned_cols=322 Identities=28% Similarity=0.401 Sum_probs=293.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC------CCEEEEEECCH-------HHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HH
Q ss_conf 77999778878999999999779------98189994498-------999999977898422798817874389731-68
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRG------LANVTLLGRKE-------ILMQQLEDTRINAKALPGIKLSPLLNFSSD-HT 70 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g------~~~V~l~~r~~-------~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~ 70 (329)
.||+|+|+|+||||+|+.+.+|- ..+|++|.+++ ...+.||+.|+|+||||++++|+|+.+.+| .+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHH
T ss_conf 37999816808999999986525405566730367775013377057899875155634233678659977676523998
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC----CCCCCCHHHHHHHHHCCCEECCCCCHHHHHHH
Q ss_conf 77555544112217776665555332035685055237520002----58543101233210012100128881789987
Q gi|254781039|r 71 LLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYN----SGMLLSSYSEKVLPSHSISVLSGPGFARDIAQ 146 (329)
Q Consensus 71 ~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~----t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~ 146 (329)
+++|||++++++|+|++.++|++++.+++++...|||+||++.. +..++|++|.+.+ ..++.+|+|||+|.|||+
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~l-gI~~~vL~GaNiA~EVa~ 180 (372)
T KOG2711 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRAL-GIPCSVLMGANIASEVAN 180 (372)
T ss_pred HHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCCCEEEHHHHHHHHH-CCCCEEECCCCHHHHHHH
T ss_conf 8433888999487154799999985425799807885404141688884463699999986-897032147745899975
Q ss_pred HHHHHCCCCCCHHHHHH-HHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 65321246773178999-99975341113899738861444400025677889975211003805789999998999999
Q gi|254781039|r 147 GLPVGVILSSKNIDISR-RLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMK 225 (329)
Q Consensus 147 ~~pt~~~ia~~d~~~~~-~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~ 225 (329)
++++..++++++..... .+.++|+++|||++..+|+.|||+|||||||+|||+|++|||++|+||++|++.+|+.||..
T Consensus 181 ~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~Em~~ 260 (372)
T KOG2711 181 EKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLEMIK 260 (372)
T ss_pred CCCCCEEEECCCHHHCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 14430157636424315489998378854899722302767766677589876104422037752089999953899999
Q ss_pred HHHHH-CC-CHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCC-CCCC-----HHCCCEECHHHHHHHHHHHHHHCCC-
Q ss_conf 99872-25-44553200232101577644775300678775089-0702-----5729600319999999999998289-
Q gi|254781039|r 226 LTEAM-NG-RADTILRLSGVGDLILTATSEQSRNFCFGIALGRG-EKQN-----PDQIQLVEGAIAVSCVINISKKMGL- 296 (329)
Q Consensus 226 l~~~~-g~-~~~t~~glaG~GDl~~T~~s~~SRN~~~G~~lg~g-~~~~-----~~~~~~vEG~~~~~~i~~l~~~~~~- 296 (329)
|++.+ .+ +++|++++||++||++||+++ |||++++.++++ ++.. .-++|.++|+.|++.+|+++++.++
T Consensus 261 F~~~f~p~~~~~t~~escGvaDlitTC~gG--RNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~~~l~ 338 (372)
T KOG2711 261 FATHFYPGSKPTTFFESCGVADLITTCYGG--RNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYELLQKKGLV 338 (372)
T ss_pred HHHHHCCCCCCCEEECCCCHHHHHHHHHCC--CCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHH
T ss_conf 999857899853342233078899997647--538999999873887778999850897444807799999999874906
Q ss_pred -CCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
Q ss_conf -871599999998078998999999848898789
Q gi|254781039|r 297 -KLPIFQAISDVMMNHISVDEALSILLNHSSEEQ 329 (329)
Q Consensus 297 -~~Pi~~~v~~il~~~~~~~~~i~~L~~~~~~~e 329 (329)
+|||+++||+||+++.++++.+++|.++|..++
T Consensus 339 ~kfPlftaVykI~~~~~~~~~lle~l~~~~~~~~ 372 (372)
T KOG2711 339 EKFPLFTAVYKICYERLPPQALLECLRNHPEDDP 372 (372)
T ss_pred HHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
T ss_conf 5273899999998469987999999853465689
No 6
>pfam07479 NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the C-terminal substrate-binding domain.
Probab=100.00 E-value=0 Score=326.82 Aligned_cols=142 Identities=42% Similarity=0.710 Sum_probs=136.6
Q ss_pred CCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCHHH
Q ss_conf 88614444000256778899752110038057899999989999999987225445532002321015776447753006
Q gi|254781039|r 180 DDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILRLSGVGDLILTATSEQSRNFC 259 (329)
Q Consensus 180 ~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t~~glaG~GDl~~T~~s~~SRN~~ 259 (329)
||++|||+|||+||||||++||++|+++|+|+++++++||++||.+|++++|++++||+||||+|||++||+|++||||+
T Consensus 1 dDi~Gve~~galKNi~Aia~G~~~gl~~g~N~~aal~~~g~~Em~~~~~~~g~~~~T~~glaG~GDLilTc~s~~SRN~~ 80 (145)
T pfam07479 1 EDVVGVEIGGALKNVIAIAAGILDGLGFGDNTKAALITRGLMEMIKFGAALGGGPETFFGLAGLGDLITTCTSELGRNRR 80 (145)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHCCCCCCCHH
T ss_conf 98524799999999999999999885898259999999999999999999789911444145266766530489998689
Q ss_pred HHHHHHCCCCCCH---HCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 7877508907025---7296003199999999999982898715999999980789989999998
Q gi|254781039|r 260 FGIALGRGEKQNP---DQIQLVEGAIAVSCVINISKKMGLKLPIFQAISDVMMNHISVDEALSIL 321 (329)
Q Consensus 260 ~G~~lg~g~~~~~---~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~il~~~~~~~~~i~~L 321 (329)
||+++|+|....+ +..+++||+++++.++++++++++++||+++||+||+++.+|+++++.|
T Consensus 81 ~G~~l~~g~~~~~~~~~~~~~vEG~~t~k~i~~l~~~~~i~~Pi~~~vy~Il~~~~~p~~~i~~L 145 (145)
T pfam07479 81 VGEALGKGKSLEEIEKELGQVAEGVKTAKEVYELAKRKGLDFPLFTAVYRILYEGLKPEEAIEYL 145 (145)
T ss_pred HHHHHHCCCCHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 99999849999999986577210799999999999981999858999999993969999999709
No 7
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=100.00 E-value=3.8e-43 Score=300.19 Aligned_cols=158 Identities=38% Similarity=0.582 Sum_probs=152.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHCCCC
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316-87755554411221
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDH-TLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~-~~l~~adiIiiavp 83 (329)
+||+|||+|+||||||..|++|| |+|++|+|+++.++.|++.|.|++|||++++|+++++++|. ++++++|+|++|||
T Consensus 1 kKI~IiGaG~wGtAla~~la~n~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~adiIiiavp 79 (159)
T pfam01210 1 KKIAVLGAGSWGTALAKVLARNG-HEVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVLAVP 79 (159)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHCCCEEEEECC
T ss_conf 98999996999999999999879-98999990436667788669782104786455530542889999837989999174
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 77766655553320356850552375200025854310123321001210012888178998765321246773178999
Q gi|254781039|r 84 SKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNIDISR 163 (329)
Q Consensus 84 s~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~~~~~ 163 (329)
|++++++++++++++++++++|+++|||+.+++++++|++++.+|..++++|||||||.||++++||++|+||.|.+.++
T Consensus 80 s~~~~~~~~~i~~~~~~~~~iv~~sKGie~~t~~~~s~i~~~~~~~~~~~vlsGPs~A~Ev~~~~pta~vias~d~~~A~ 159 (159)
T pfam01210 80 SQALREVLKQLKGLLSPGAILVSLTKGIEPGTLKLLSEIIEEELPINPIAVLSGPSHAEEVALGLPTATVVASEDQQAAE 159 (159)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCEEEEECCCHHHHC
T ss_conf 88999999999865576556888751442788752999999878998739995786499997489818999619947709
No 8
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.92 E-value=7.1e-25 Score=181.40 Aligned_cols=286 Identities=19% Similarity=0.232 Sum_probs=200.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
+||+|+|+|+||+.+|..|++.| ++|++|+|.++..+.+++.+..... ++-..+..+.++++.+.+..+|+||+||++
T Consensus 1 MkI~IiGaGaiG~~~a~~L~~ag-~~V~li~r~~~~~~~i~~~Gl~i~~-~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs 78 (307)
T PRK06522 1 MKIAILGAGAIGGLFGARLAQAG-HDVTLVARGATLAEALNENGLRLLE-GGEVFVVPVPAADDPAELGPQDLVILAVKA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHCCEEEEC-CCCEEECCCCCCCCHHHCCCCCEEEEECCC
T ss_conf 98999991499999999998489-9889997888899999968939952-897698055034886674898889998066
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCC--------EECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 776665555332035685055237520002585431012332100121--------001288817899876532124677
Q gi|254781039|r 85 KGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSI--------SVLSGPGFARDIAQGLPVGVILSS 156 (329)
Q Consensus 85 ~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~--------~vlsGPs~A~Eia~~~pt~~~ia~ 156 (329)
+.++++++.+++++.+++.|+++.+|++.. +.+.+.+|..++ +...+|....--..+....-...+
T Consensus 79 ~~~~~a~~~l~~~l~~~t~iv~lqNG~g~~------~~l~~~~~~~~v~~gv~~~~a~~~~pg~v~~~~~g~~~~G~~~~ 152 (307)
T PRK06522 79 YQLPAALPDLAPLLGPETVVLFLQNGVGHE------EVLAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRTTIGEPDG 152 (307)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCHH------HHHHHHCCCCCEEEEEEEEEEEECCCEEEEECCCCCEEEECCCC
T ss_conf 689999999986459994899961686779------99986537253999998998997188389984897189715898
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 317899999975341113899738861444400025677----8899752110038057899999989999999987225
Q gi|254781039|r 157 KNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVI----AIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNG 232 (329)
Q Consensus 157 ~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~----AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~ 232 (329)
...+..+.++++|+...+.+..++|+.+..|.=-+-|.. +-..|.-.|.-+.+.....++.+.+.|...++++.|.
T Consensus 153 ~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~a~G~ 232 (307)
T PRK06522 153 QSSDRVEALADLLNAAGLDVEWSPDIRQEIWRKLWVNCVINPLTALLGCTNGELLADPDGRALIRALMEEVAAVAEAEGV 232 (307)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 74679999999997289966981347999985799886042788971997788863977999999999999999998699
Q ss_pred CHHHHHHCCCCCEEEEEEECCCCCHHH-HHHHHHCCCCCCHHCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
Q ss_conf 445532002321015776447753006-787750890702572960031999999999999828987159999999807
Q gi|254781039|r 233 RADTILRLSGVGDLILTATSEQSRNFC-FGIALGRGEKQNPDQIQLVEGAIAVSCVINISKKMGLKLPIFQAISDVMMN 310 (329)
Q Consensus 233 ~~~t~~glaG~GDl~~T~~s~~SRN~~-~G~~lg~g~~~~~~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~il~~ 310 (329)
+... ..+.+.+.++....++|++ +-+.+-+|.+ .|=-+-...+.++++++++++|..+++|+++..
T Consensus 233 ~~~~----~~~~~~~~~~~~~~~~~~sSM~qDi~~gr~--------tEid~i~G~vv~~a~~~Gi~~P~~~~l~~llk~ 299 (307)
T PRK06522 233 HLPV----DAVERYVGTVIQKTAANYSSMLQDLEAGRR--------TEIDAIVGYVLRRGRKHGIPTPYNDALYALLKA 299 (307)
T ss_pred CCCH----HHHHHHHHHHHHCCCCCCCHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9987----899999999972268998599999887992--------589999999999999948998799999999999
No 9
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.85 E-value=1.2e-19 Score=147.46 Aligned_cols=292 Identities=18% Similarity=0.255 Sum_probs=194.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCC--CCCC-CCCEEEEECHHHHHHHHHHHC
Q ss_conf 8779997788789999999997799818999449899999997789842279--8817-874389731687755554411
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALP--GIKL-SPLLNFSSDHTLLQNADIVLF 80 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp--~i~l-~~~i~~t~~~~~l~~adiIii 80 (329)
|+||+|+|+|++|+-+|..|++.| |+|++++| ++..+.|++++....... .... +..+..+++.+.+..+|+||+
T Consensus 2 mmkI~IiGaGAvG~~~a~~L~~aG-~~V~lv~r-~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv 79 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAG-ADVTLIGR-ARIGDEIRAHGLRLTDYRGRDVRVPPDAIAFSTDPAALATADLVLV 79 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEEC-HHHHHHHHHCCCEEECCCCCEEEECCCEEEECCCHHHCCCCCEEEE
T ss_conf 477999896799999999998589-98799956-7899999967909963899768963661561488656589998999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCC--------EECCCCCHHHHHHHHHHHHC
Q ss_conf 2217776665555332035685055237520002585431012332100121--------00128881789987653212
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSI--------SVLSGPGFARDIAQGLPVGV 152 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~--------~vlsGPs~A~Eia~~~pt~~ 152 (329)
||++..+.++++.+++++.++..++++..|+... +.+.+.+|..++ +...||.. +-.+....+
T Consensus 80 ~vKa~~~~~a~~~l~~~l~~~t~il~lQNGlg~~------e~l~~~~~~~~v~~g~~~~~~~~~gpg~---~~~~~~g~~ 150 (341)
T PRK08229 80 TVKSAATADAAAALAGHARPGAVVVSFQNGVRNA------DVLRAALPGATVLAGMVPFNVISRGPGH---FHQGTSGAL 150 (341)
T ss_pred EECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCH------HHHHHHCCCCCEEEEEEEECEEEECCCE---EEECCCCCC
T ss_conf 7075788999999986438996899950477719------9999868998299999785509966947---996378860
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 467731789999997534111389973886144440002567788997521100----3805789999998999999998
Q gi|254781039|r 153 ILSSKNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRG----CGDSARAIVMVQGLSEIMKLTE 228 (329)
Q Consensus 153 ~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~----~g~N~~aal~~~g~~Em~~l~~ 228 (329)
.+ .+.+..+.+.+.|+...+.+..++|+.+..|.=.+-|+. -+...+-|.. +.+.....++.+.+.|....++
T Consensus 151 ~~--~~~~~~~~l~~~l~~agi~~~~~~dI~~~~W~KL~~N~~-n~l~al~~~~~~~~~~~~~~~~~~~~~~~E~~~v~~ 227 (341)
T PRK08229 151 AI--EASPALRPFAAAFERAGLPLVTHEDMRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSYRRCLALAQREALRVLK 227 (341)
T ss_pred CC--CCCHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCC-CHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 67--888789999999984799977673079999999986545-758887499757675294799999999999999999
Q ss_pred HHCCCHHHHHHCCC-CCEEEEEEECCCCCHHHHHHHHHCCC------CCCHHCCCEECHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 72254455320023-21015776447753006787750890------702572960031999999999999828987159
Q gi|254781039|r 229 AMNGRADTILRLSG-VGDLILTATSEQSRNFCFGIALGRGE------KQNPDQIQLVEGAIAVSCVINISKKMGLKLPIF 301 (329)
Q Consensus 229 ~~g~~~~t~~glaG-~GDl~~T~~s~~SRN~~~G~~lg~g~------~~~~~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~ 301 (329)
+.|-++.-+.++.. +-+-++..-... ..+..++.+.... -.+-..+.-.|==+-...+.+++++++++.|+.
T Consensus 228 a~gi~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~sSMlqD~~~GR~tEId~InG~vvr~a~~~Gv~tP~n 306 (341)
T PRK08229 228 AAGIRPARLTPLPPAWIPRLLRLPDPL-FRRLAGRMLAIDPLARSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVN 306 (341)
T ss_pred HCCCCCCCCCCCCHHHHHHHHCCCHHH-HHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 769970003454134455663065689-9999987632699999819999886990539988869999999838997689
Q ss_pred HHHHHHHHC
Q ss_conf 999999807
Q gi|254781039|r 302 QAISDVMMN 310 (329)
Q Consensus 302 ~~v~~il~~ 310 (329)
+.+|+++..
T Consensus 307 ~~l~~lvk~ 315 (341)
T PRK08229 307 RRLCALIKE 315 (341)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 10
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.77 E-value=5.2e-18 Score=136.76 Aligned_cols=283 Identities=17% Similarity=0.184 Sum_probs=178.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHCCCC
Q ss_conf 7799977887899999999977998189994498999999977898422798817874389731-687755554411221
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIiiavp 83 (329)
+||+|+|+|++|+.+|..|++.| |+|+++.|. +..+.+++++....- ++-...-...+..+ .+....+|+||+|++
T Consensus 1 MkI~I~GaGAiG~~~a~~L~~~g-~~V~lv~r~-~~~~~i~~~Gl~i~~-~~~~~~~~~~~~~~~~~~~~~~D~viva~K 77 (306)
T PRK12921 1 MKIAVVGAGAVGGTFGARLLEAG-RDVTFLGRS-ARAEALREKGLVIRS-DHGDVTVPGPVITDPEEITGPFDLVILAVK 77 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEEEC-CHHHHHHHCCEEEEE-CCCEEEEECCCCCCCHHHCCCCCEEEEEEC
T ss_conf 98999992499999999998369-988999700-099999978969997-797699806105080565689768999704
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCC--------EECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 7776665555332035685055237520002585431012332100121--------00128881789987653212467
Q gi|254781039|r 84 SKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSI--------SVLSGPGFARDIAQGLPVGVILS 155 (329)
Q Consensus 84 s~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~--------~vlsGPs~A~Eia~~~pt~~~ia 155 (329)
+..+.++++.+++++.+++.++++..|+... |.+.+.+|..++ +...+|..-.. .+....+.++
T Consensus 78 s~~~~~a~~~l~~~~~~~t~il~lQNG~g~~------~~l~~~~~~~~v~~gv~~~~a~~~~pg~i~~--~~~~~~~~~g 149 (306)
T PRK12921 78 AYQLDAAIPDLKPLVGEDTVIIPLQNGIGHL------ETLEKYFGRERVLGGVVYISAQLEGDGVVVQ--RSPALRLTFG 149 (306)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCHH------HHHHHHCCCCCEEEEEEEEEEEEECCEEEEE--ECCCCEEEEC
T ss_conf 5677999999986339994899934877538------8998655755378999997589707827999--3699759826
Q ss_pred C---CHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCC---H-HHHHHHHHHHHHHHHHHH
Q ss_conf 7---31789999997534111389973886144440002567788997521100380---5-789999998999999998
Q gi|254781039|r 156 S---KNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGD---S-ARAIVMVQGLSEIMKLTE 228 (329)
Q Consensus 156 ~---~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~---N-~~aal~~~g~~Em~~l~~ 228 (329)
. ...+..+.+.++|+...+.+..++|+...-|.=-+=|..--....+-+...|+ | ..-.++..-+.|...+++
T Consensus 150 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~W~Kl~~N~~iN~ltal~~~~~g~l~~~~~~~~~~~~l~~E~~~va~ 229 (306)
T PRK12921 150 EIDGQRSERTRAVRDALAGAGLEVVLSDNIRQDIWRKLLFNLAMNGITALTRATVGPIRSRPGGRDLALALLDECLAVAR 229 (306)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 88987568899999999718999576107799999999988635178898589777786497799999999999999999
Q ss_pred HHCCCHHHHHHCCCCCEEEEEEECCCCCHH-HHHHHHHCCCCCCHHCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 722544553200232101577644775300-6787750890702572960031999999999999828987159999999
Q gi|254781039|r 229 AMNGRADTILRLSGVGDLILTATSEQSRNF-CFGIALGRGEKQNPDQIQLVEGAIAVSCVINISKKMGLKLPIFQAISDV 307 (329)
Q Consensus 229 ~~g~~~~t~~glaG~GDl~~T~~s~~SRN~-~~G~~lg~g~~~~~~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~i 307 (329)
+.|-+...-.-..-+ +.+...+. .|+ ++=+.+-+|.+. |=-.-...+.+++++++++.|..+++|++
T Consensus 230 a~Gi~~~~~~~~~~~-~~~~~~~~---~~~sSM~qDi~~gr~t--------Eid~i~G~iv~~a~~~Gv~~P~~~~l~~l 297 (306)
T PRK12921 230 AEGAPLRDQVVQRIV-KIFAGAPG---DMGTSMLRDLEKGRPL--------EIDHLNGVLLRRGRQHGIPTPILDTIYAL 297 (306)
T ss_pred HCCCCCCHHHHHHHH-HHHHHCCC---CCCCHHHHHHHCCCCC--------HHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 869999868999999-99970579---9982899998879853--------79999999999999948998889999999
Q ss_pred HHC
Q ss_conf 807
Q gi|254781039|r 308 MMN 310 (329)
Q Consensus 308 l~~ 310 (329)
+.-
T Consensus 298 vk~ 300 (306)
T PRK12921 298 LKA 300 (306)
T ss_pred HHH
T ss_conf 999
No 11
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.77 E-value=5.7e-18 Score=136.54 Aligned_cols=282 Identities=13% Similarity=0.170 Sum_probs=185.7
Q ss_pred CCC-CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCC-CCCCCCCEEEEECHHHHHHHHHH
Q ss_conf 988-8779997788789999999997799818999449899999997789842279-88178743897316877555544
Q gi|254781039|r 1 MKN-YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALP-GIKLSPLLNFSSDHTLLQNADIV 78 (329)
Q Consensus 1 M~~-~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp-~i~l~~~i~~t~~~~~l~~adiI 78 (329)
|++ .+||+|+|+|++|+-+|..|++.| ++|+++.|.+ .+.+++++....... +..++ .+.++++.+.+..+|+|
T Consensus 1 M~~~~~kI~IiGaGAiG~~~a~~L~~aG-~~V~li~r~~--~~ai~~~Gl~i~~~~g~~~~~-~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 1 MDSETPRIAIIGTGAIGGFYGAMLARAG-FDVHFLLRSD--YEAVRENGLQVDSVHGDFHLP-QVQAYRSAEDMPPCDWV 76 (313)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCH--HHHHHHCCEEEEECCCCEEEC-CCEEECCHHHCCCCCEE
T ss_conf 9999888999991499999999999669-9569996755--999986885999669828976-84023697783996589
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCC--------EECCCCCHHHHHHHHHHH
Q ss_conf 112217776665555332035685055237520002585431012332100121--------001288817899876532
Q gi|254781039|r 79 LFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSI--------SVLSGPGFARDIAQGLPV 150 (329)
Q Consensus 79 iiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~--------~vlsGPs~A~Eia~~~pt 150 (329)
|+||++....++++.+++.+.+++.|+++..|+... +.+.+.+|..++ +...+|..-.- .-..
T Consensus 77 iv~vKs~~~~~~~~~l~~~~~~~t~il~lQNG~g~~------~~l~~~~~~~~vl~gv~~~~a~~~~pg~v~~---~~~g 147 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPGAKVLLLQNGLGVE------EQLRPLLPAEHLLGGLCFICSNRVGPGVIHH---LAYG 147 (313)
T ss_pred EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHH------HHHHHHCCCCEEEEEEEEEEEEECCCCEEEE---CCCC
T ss_conf 995366778999998786448995899944766618------8887537888389999998899727988998---8888
Q ss_pred HCCCC-----C---CHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCC---H-HHHHHHHH
Q ss_conf 12467-----7---31789999997534111389973886144440002567788997521100380---5-78999999
Q gi|254781039|r 151 GVILS-----S---KNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGD---S-ARAIVMVQ 218 (329)
Q Consensus 151 ~~~ia-----~---~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~---N-~~aal~~~ 218 (329)
.+.++ + ...+..+.++++|+...+.+..++|+....|.=.+=|..--+...+-+...|+ + ..-.++.+
T Consensus 148 ~~~~G~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~dI~~~~W~Kl~~N~~~N~ltAl~~~~~g~l~~~~~~~~l~~~ 227 (313)
T PRK06249 148 AVNLGYHSGPAADDGITERVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRA 227 (313)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHH
T ss_conf 38997168887863031999999999985799978643799999999998872428989838987788709689999999
Q ss_pred HHHHHHHHHHHHCCCH-HHHHHCCCCCEEEEEEECCCCCH-HHHHHHHHCCCCCCHHCCCEECHHHHHHHHHHHHHHCCC
Q ss_conf 8999999998722544-55320023210157764477530-067877508907025729600319999999999998289
Q gi|254781039|r 219 GLSEIMKLTEAMNGRA-DTILRLSGVGDLILTATSEQSRN-FCFGIALGRGEKQNPDQIQLVEGAIAVSCVINISKKMGL 296 (329)
Q Consensus 219 g~~Em~~l~~~~g~~~-~t~~glaG~GDl~~T~~s~~SRN-~~~G~~lg~g~~~~~~~~~~vEG~~~~~~i~~l~~~~~~ 296 (329)
-+.|...++++.|-+. +.+. |-++..+.....| -++=+.+-+|.+ .|=-.-...+.++++++++
T Consensus 228 l~~E~~~va~a~G~~l~~~~~------~~~~~~~~~~~~~~sSM~qDi~~gR~--------tEid~i~G~vvr~a~~~Gv 293 (313)
T PRK06249 228 LMAEVIQGAAACGHTLPEGYA------DHLLAVTERMPDYRPSMYHDFEEGRP--------LELEAIYANPLAAAAAAGC 293 (313)
T ss_pred HHHHHHHHHHHCCCCCCHHHH------HHHHHHHHCCCCCCCHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHCC
T ss_conf 999999999985999986899------99999972379998489999986893--------6199998799999999489
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 8715999999980
Q gi|254781039|r 297 KLPIFQAISDVMM 309 (329)
Q Consensus 297 ~~Pi~~~v~~il~ 309 (329)
+.|..+.+|+++.
T Consensus 294 ~~P~~~~l~~llk 306 (313)
T PRK06249 294 AMPRVEMLYQALA 306 (313)
T ss_pred CCCHHHHHHHHHH
T ss_conf 9738999999999
No 12
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.76 E-value=1.1e-17 Score=134.64 Aligned_cols=283 Identities=14% Similarity=0.086 Sum_probs=176.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHC
Q ss_conf 98887799977887899999999977998189994498999999977898422798817874389731687755554411
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLF 80 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIii 80 (329)
|+ +||+|+|+|++|+.+|..|++.| ++|+++.|+++..+.+++.+.-....++......+.+ ...+.....|++|+
T Consensus 1 m~--MkI~IiGaGAiG~~~a~~L~~ag-~dV~lv~r~~~~~~~~~~~g~~~~~~~~~~~~~~v~~-~~~~~~~~~D~viv 76 (305)
T PRK05708 1 MS--MTWHILGAGSLGSLWACRLARAG-LPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA-ETADAPEPIHRLLV 76 (305)
T ss_pred CC--CEEEEECCCHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHHCCCEEEEECCCEEEEECCC-CCCCCCCCCCEEEE
T ss_conf 99--88999882399999999998489-9739999478999999978998998689557874046-57665788778999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCC--------EECCCCCHHHHHHHHHHHHC
Q ss_conf 2217776665555332035685055237520002585431012332100121--------00128881789987653212
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSI--------SVLSGPGFARDIAQGLPVGV 152 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~--------~vlsGPs~A~Eia~~~pt~~ 152 (329)
||++..++++++.+++++.+++.|+++..|+... |.+.+.+|..++ +...+|..-... -...+
T Consensus 77 avK~~~~~~a~~~l~~~l~~~t~Iv~lQNGlg~~------e~la~~~~~~~vi~~~~~~~a~~~~pg~v~~~---g~g~~ 147 (305)
T PRK05708 77 ACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQ------DAVAARVPHARCIFASSTEGAFRDGDWRVVFA---GHGFT 147 (305)
T ss_pred EECCCCHHHHHHHHHHHCCCCCEEEEECCCCCHH------HHHHHHCCCCCEEEEEEECCEEEECCEEEEEC---CCCCE
T ss_conf 8042568999999886449995899943776479------99999779997899996100797154289986---88616
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHC
Q ss_conf 467731789999997534111389973886144440002567788997521100380578-9999998999999998722
Q gi|254781039|r 153 ILSSKNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSAR-AIVMVQGLSEIMKLTEAMN 231 (329)
Q Consensus 153 ~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~-aal~~~g~~Em~~l~~~~g 231 (329)
.++..+......+.+.|+...+.+..++|+...-|.=.+=|+--=+.+.+-+...|.-.. ...+..-+.|+...+.+.|
T Consensus 148 ~ig~~~~~~~~~l~~~l~~ag~~~~~~~dI~~~~W~Kl~~N~a~n~ltal~~~~~g~l~~~~~~~~~l~~e~~~~~~~~g 227 (305)
T PRK05708 148 WLGDPRNPAAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHLQEVAALCAELSALLRRCG 227 (305)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHCC
T ss_conf 85788982689999999837999776417999999999999866289898537744676499999999999999999819
Q ss_pred CCHH--HHHHCCCCCEEEEEEECCCCCHH-HHHHHHHCCCCCCHHCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 5445--53200232101577644775300-67877508907025729600319999999999998289871599999998
Q gi|254781039|r 232 GRAD--TILRLSGVGDLILTATSEQSRNF-CFGIALGRGEKQNPDQIQLVEGAIAVSCVINISKKMGLKLPIFQAISDVM 308 (329)
Q Consensus 232 ~~~~--t~~glaG~GDl~~T~~s~~SRN~-~~G~~lg~g~~~~~~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~il 308 (329)
.... .+.. -+-++.-. + +.|+ ++=+.+-.|. -.|==.-...+.+++++++++.|..+.+|+.+
T Consensus 228 ~~~~~~~~~~--~~~~~~~~-~---~~~~sSM~qDi~~gR--------~tEid~i~G~vvr~a~~~gi~tP~~~~l~~~l 293 (305)
T PRK05708 228 QPAAAANLHE--EVQRVIQA-T---AANYSSMYQDVRAGR--------RTEIHYLLGYACRAADRHGLPLPRLQHLQQRL 293 (305)
T ss_pred CCCCHHHHHH--HHHHHHHH-C---CCCCCHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9877557999--99999974-7---899917999998779--------80899999999999998489963899999999
Q ss_pred HC
Q ss_conf 07
Q gi|254781039|r 309 MN 310 (329)
Q Consensus 309 ~~ 310 (329)
..
T Consensus 294 ~a 295 (305)
T PRK05708 294 VA 295 (305)
T ss_pred HH
T ss_conf 99
No 13
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=99.76 E-value=1.4e-17 Score=134.00 Aligned_cols=285 Identities=18% Similarity=0.238 Sum_probs=218.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCH--HHHHHHHHCCCCCCCCCC---CCCCCCEEEEECHHHHH--HHHH
Q ss_conf 7999778878999999999779-98189994498--999999977898422798---81787438973168775--5554
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRG-LANVTLLGRKE--ILMQQLEDTRINAKALPG---IKLSPLLNFSSDHTLLQ--NADI 77 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g-~~~V~l~~r~~--~~~~~i~~~~~n~~~lp~---i~l~~~i~~t~~~~~l~--~adi 77 (329)
||+|+|+|++|+.++..|++.| .|+|++|.|++ +.++.+|+.+....-+.+ ..+...+.++++.+... ++|+
T Consensus 1 ~i~i~G~GA~G~l~ga~L~~~g~~~~V~~~~R~~r~~~~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 80 (332)
T TIGR00745 1 KIAIIGAGAVGSLYGARLARAGANHDVTLLARGKRPKQLEALNQEGLRIVSLDGEGVFELKIPVSAATDPETLPPQKADL 80 (332)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCEEECCCCCCCCCCCCE
T ss_conf 96899517889999999873189951899988721688999985883897625677503304412204753357877548
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHH--CCC--------EECCCCC-HHHHHHH
Q ss_conf 4112217776665555332035685055237520002585431012332100--121--------0012888-1789987
Q gi|254781039|r 78 VLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPS--HSI--------SVLSGPG-FARDIAQ 146 (329)
Q Consensus 78 Iiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~--~~~--------~vlsGPs-~A~Eia~ 146 (329)
+|++|++....+.+..+.+++.++..|+++..|+... |.+.+.+|. .++ +...+|. ...-...
T Consensus 81 ~~~~~K~~~~~~~~~~~~~~~~~~~~vl~lqNG~g~~------e~l~~~~~~n~~~~l~G~~~~ga~~~~~g~~~~~~g~ 154 (332)
T TIGR00745 81 VIITVKAYQTEEALALLLPLIGPNTVVLLLQNGLGHE------EKLAELLPENRRRVLGGVTTHGAAREEPGLVVHHAGE 154 (332)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHH------HHHHHHCCCCCCCEEEEEEEEEEEEECCCEEEEEECC
T ss_conf 9997035004899999986418882799973880279------9999850699770899999887677088408997236
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCC---CH--HHHHHHHHHHH
Q ss_conf 65321246773178999999753411138997388614444000256778899752110038---05--78999999899
Q gi|254781039|r 147 GLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCG---DS--ARAIVMVQGLS 221 (329)
Q Consensus 147 ~~pt~~~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g---~N--~~aal~~~g~~ 221 (329)
|...--...+. +..+.++++|+..-+.++.+.|+.-.-|-=.+=|.-.=+.+.+-+...| +| .-..++.+-+.
T Consensus 155 G~~~~G~~~~~--~~~~~~a~~l~~ag~~~~~~~d~~~~~W~Kl~~N~~iNpltall~~~nG~l~~~~~~~~~~~~~~~~ 232 (332)
T TIGR00745 155 GATKIGDYVGE--EAVEALAELLNEAGIPAELTEDIQAAIWKKLLVNAAINPLTALLDCKNGELLENPPEARELLESLID 232 (332)
T ss_pred CEEEECCCCCH--HHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 33884577764--5789999997317985378302899998878645211103121106632101480558999999999
Q ss_pred HHHHHHH-------------HHCCCHHHHHHCCCCCEEEEEEECCCCCH----HHHHHHHHCCC-CCCHHCCCEECHHHH
Q ss_conf 9999998-------------72254455320023210157764477530----06787750890-702572960031999
Q gi|254781039|r 222 EIMKLTE-------------AMNGRADTILRLSGVGDLILTATSEQSRN----FCFGIALGRGE-KQNPDQIQLVEGAIA 283 (329)
Q Consensus 222 Em~~l~~-------------~~g~~~~t~~glaG~GDl~~T~~s~~SRN----~~~G~~lg~g~-~~~~~~~~~vEG~~~ 283 (329)
|..++.+ +.|-....-.-..-+ ..+|- ....| -++=+.+-+|. .. |--+-
T Consensus 233 E~~~v~~~~PLF~E~~~~l~a~g~~~~~~~~~~~~---~~~~~-~~~~~~~a~sSM~qD~~~grR~T--------Eid~i 300 (332)
T TIGR00745 233 EVVRVARVYPLFYEARKALEAEGVELPDDEVEEYV---RAVIR-MTAENYEATSSMLQDLERGRRRT--------EIDAI 300 (332)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH---HHHHH-CCCCCCCCCCHHHHHHHHCCCCC--------CHHHH
T ss_conf 99999874570366420464405767567899999---98750-68222346672799997068743--------07665
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHC
Q ss_conf 999999999828987159999999807
Q gi|254781039|r 284 VSCVINISKKMGLKLPIFQAISDVMMN 310 (329)
Q Consensus 284 ~~~i~~l~~~~~~~~Pi~~~v~~il~~ 310 (329)
.-.+.+.++++++++|.++.+|+.+.-
T Consensus 301 ~G~v~~~A~~~g~~~P~~~~l~~~~~~ 327 (332)
T TIGR00745 301 NGAVVELAEKLGIATPVNRTLYALLKA 327 (332)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 359999999749987178999999999
No 14
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.3e-16 Score=127.79 Aligned_cols=273 Identities=19% Similarity=0.255 Sum_probs=192.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC-------CCCCEEEEECH-HHHHHHH
Q ss_conf 779997788789999999997799818999449899999997789842279881-------78743897316-8775555
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIK-------LSPLLNFSSDH-TLLQNAD 76 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~-------l~~~i~~t~~~-~~l~~ad 76 (329)
+||+|+|+|..|...+..|++.| |+|...+.|+..++.||+ +..|.|-||+. ....+++|+|. ++++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G-HeVv~vDid~~KV~~ln~-g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG-HEVVCVDIDESKVELLNK-GISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHC-CCCCCCCCCHHHHHHHCCCCCCEEEECCHHHHHHCCC
T ss_conf 91589888556887899998709-848999578899999867-9999767058999984623572798747888962597
Q ss_pred HHHCCCCH----------HHHHHHHHHHHHHCCCCCCEEECCCCCC-CCCCCCCCHHHHHHHHHCCCEECCCCCHHHH--
Q ss_conf 44112217----------7766655553320356850552375200-0258543101233210012100128881789--
Q gi|254781039|r 77 IVLFATSS----------KGYGEALNFYSNWLKESAEIIICSKGFE-YNSGMLLSSYSEKVLPSHSISVLSGPGFARD-- 143 (329)
Q Consensus 77 iIiiavps----------~~~~~~l~~i~~~l~~~~~ii~~sKGi~-~~t~~~~se~i~~~~~~~~~~vlsGPs~A~E-- 143 (329)
++|+|||+ ++++.+++.+.++++..+.+| .|--. ++|...+-+.+.+..+...+.+.+.|-|-+|
T Consensus 79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV--~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~ 156 (414)
T COG1004 79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV--IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGS 156 (414)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE--ECCCCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHCCCC
T ss_conf 799974899998897328999999999986267873999--848879884699999998634677750761867844752
Q ss_pred -HHH-HHHHHCCCCCCHHHHHHHHHHHHCCC---CEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHH-HHHHH
Q ss_conf -987-65321246773178999999753411---1389973886144440002567788997521100380578-99999
Q gi|254781039|r 144 -IAQ-GLPVGVILSSKNIDISRRLSKILTTD---SFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSAR-AIVMV 217 (329)
Q Consensus 144 -ia~-~~pt~~~ia~~d~~~~~~i~~~~~~~---~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~-aal~~ 217 (329)
|.+ -.|.-+++++.+.+..+.+.+++... ...+. -+|+...|+ .+|-.|+- |.-++
T Consensus 157 Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l-~t~~~~AE~-----------------IKyaaNafLAtKIs 218 (414)
T COG1004 157 AVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPIL-FTDLREAEL-----------------IKYAANAFLATKIS 218 (414)
T ss_pred HHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEE-EECCHHHHH-----------------HHHHHHHHHHHHHH
T ss_conf 344315898389925771689999999753420499889-956029999-----------------99998899999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCHHHHHHH-----HHCCCCCCHHCCCEECHHHHHHHHHHHHH
Q ss_conf 9899999999872254455320023210157764477530067877-----50890702572960031999999999999
Q gi|254781039|r 218 QGLSEIMKLTEAMNGRADTILRLSGVGDLILTATSEQSRNFCFGIA-----LGRGEKQNPDQIQLVEGAIAVSCVINISK 292 (329)
Q Consensus 218 ~g~~Em~~l~~~~g~~~~t~~glaG~GDl~~T~~s~~SRN~~~G~~-----lg~g~~~~~~~~~~vEG~~~~~~i~~l~~ 292 (329)
-++||..+++..|.+.+.+.. |+|= . . +-|.+ +|-|-+-. +.-++++...++
T Consensus 219 -FiNEia~ice~~g~D~~~V~~--gIGl------D--~---RIG~~fl~aG~GyGGsCf---------PKD~~AL~~~a~ 275 (414)
T COG1004 219 -FINEIANICEKVGADVKQVAE--GIGL------D--P---RIGNHFLNAGFGYGGSCF---------PKDTKALIANAE 275 (414)
T ss_pred -HHHHHHHHHHHHCCCHHHHHH--HCCC------C--C---HHHHHHCCCCCCCCCCCC---------CHHHHHHHHHHH
T ss_conf -999999999996989999998--7077------7--1---216760788898787677---------476999999998
Q ss_pred HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 82898715999999980789989999998488
Q gi|254781039|r 293 KMGLKLPIFQAISDVMMNHISVDEALSILLNH 324 (329)
Q Consensus 293 ~~~~~~Pi~~~v~~il~~~~~~~~~i~~L~~~ 324 (329)
.++.+.+|+.++-++=..+ ++-.++.+++|
T Consensus 276 ~~~~~~~ll~avv~vN~~q--k~~~~~~i~~~ 305 (414)
T COG1004 276 ELGYDPNLLEAVVEVNERR--KDKLAEKILNH 305 (414)
T ss_pred HCCCCHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_conf 6698568999999998888--99999999984
No 15
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.70 E-value=5.5e-16 Score=123.62 Aligned_cols=280 Identities=20% Similarity=0.285 Sum_probs=186.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
+||+|+|+|++|+.++..|++.| ++|++|.|++. ++.+++.+.......+ +.........+.+....+|+||+++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~~~~~Dlviv~vKa 77 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKKGLRIEDEGG-NFTTPVVAATDAEALGPADLVIVTVKA 77 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECHHH-HHHHHHCCEEEEECCC-CCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 95999878789999999998589-95799810899-9999878979981688-522443235673336788889998042
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCC--------CEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 77666555533203568505523752000258543101233210012--------1001288817899876532124677
Q gi|254781039|r 85 KGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHS--------ISVLSGPGFARDIAQGLPVGVILSS 156 (329)
Q Consensus 85 ~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~--------~~vlsGPs~A~Eia~~~pt~~~ia~ 156 (329)
..+.++++.+.+++++++.|+.+..|+.... .+++..+..+ -++..||....-...+....-...+
T Consensus 78 ~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e------~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~ 151 (307)
T COG1893 78 YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE------ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRG 151 (307)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCHHH------HHHHHCCCCEEEEEEEECCEEECCCCEEEEECCCCEEEECCCC
T ss_conf 2389999998730799848999708972699------9987388342898998424387178459993678579842677
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCC---CH-HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3178999999753411138997388614444000256778899752110038---05-7899999989999999987225
Q gi|254781039|r 157 KNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCG---DS-ARAIVMVQGLSEIMKLTEAMNG 232 (329)
Q Consensus 157 ~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g---~N-~~aal~~~g~~Em~~l~~~~g~ 232 (329)
.+.+..+.+++.|+...+.+..++|+.--.|-=.+=|.--=..+.+-+...| .| .-..++.+-+.|......+.|.
T Consensus 152 ~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~ 231 (307)
T COG1893 152 GRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGV 231 (307)
T ss_pred CCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 63078999999998289876886779999998888630323778877387478763957899999999999999997278
Q ss_pred C--H---HHHHHCCCCCEEEEEEECCCCCHH-HHHHHHHCCCCCCHHCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 4--4---553200232101577644775300-678775089070257296003199999999999982898715999999
Q gi|254781039|r 233 R--A---DTILRLSGVGDLILTATSEQSRNF-CFGIALGRGEKQNPDQIQLVEGAIAVSCVINISKKMGLKLPIFQAISD 306 (329)
Q Consensus 233 ~--~---~t~~glaG~GDl~~T~~s~~SRN~-~~G~~lg~g~~~~~~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~ 306 (329)
. . +.+....--.| ..|+ ++=+.+.+|. -.|==+-...+.+++++++++.|..+.+|.
T Consensus 232 ~~~~~~~~~v~~~~~~~~---------~~~~sSM~qDl~~gr--------~tEid~i~G~vv~~a~~~gi~~P~~~~L~~ 294 (307)
T COG1893 232 ELPEEVVERVLAVIRATD---------AENYSSMLQDLEKGR--------PTEIDAINGAVVRLAKKHGLATPVNDTLYA 294 (307)
T ss_pred CCCHHHHHHHHHHHHHCC---------CCCCCHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 888679999999986414---------032736999998288--------524898854999999982899977999999
Q ss_pred HHHC
Q ss_conf 9807
Q gi|254781039|r 307 VMMN 310 (329)
Q Consensus 307 il~~ 310 (329)
.+..
T Consensus 295 lvk~ 298 (307)
T COG1893 295 LLKA 298 (307)
T ss_pred HHHH
T ss_conf 9999
No 16
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.69 E-value=1.7e-15 Score=120.49 Aligned_cols=267 Identities=15% Similarity=0.172 Sum_probs=172.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC-------CCCCEEEEECH-HHHHHHH
Q ss_conf 779997788789999999997799818999449899999997789842279881-------78743897316-8775555
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIK-------LSPLLNFSSDH-TLLQNAD 76 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~-------l~~~i~~t~~~-~~l~~ad 76 (329)
+||+|+|.|..|..+|..|+++| |+|..++.|++.++.+++.+ .|-+-|++. -..++++|++. +++++||
T Consensus 1 MkI~ViGlGyVGl~~a~~lA~~G-~~V~g~D~d~~~i~~l~~g~-~p~~E~gl~~ll~~~~~~~~l~~ttd~~~~i~~~d 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG-HEVTGVDIDQEKVDKLNKGK-SPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHCCC-CCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHCC
T ss_conf 97999897877999999999489-94899989999999997798-99789898999999986399799878899872099
Q ss_pred HHHCCCCH----------HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCC-CHHHHHHH---HHCCCEECCCCCHHH
Q ss_conf 44112217----------77666555533203568505523752000258543-10123321---001210012888178
Q gi|254781039|r 77 IVLFATSS----------KGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLL-SSYSEKVL---PSHSISVLSGPGFAR 142 (329)
Q Consensus 77 iIiiavps----------~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~-se~i~~~~---~~~~~~vlsGPs~A~ 142 (329)
++|+|||+ ..++++++.+.+++++++.+|.-|- +.++|..-+ ..++++.. ....+.+.+-|-|-.
T Consensus 79 ii~I~V~TP~~~~g~~d~s~l~~a~~~i~~~l~~~~lvii~ST-V~pGTt~~i~~~ile~~~~~~~g~df~v~~~PEfl~ 157 (411)
T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST-VPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCEEHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
T ss_conf 9999768986668872138999999999976689998999578-686810489999887740466688547996835468
Q ss_pred HHH---H-HHHHHCCCCCCHHHHHHHHHHHHCCCCE-EEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 998---7-6532124677317899999975341113-8997388614444000256778899752110038057899999
Q gi|254781039|r 143 DIA---Q-GLPVGVILSSKNIDISRRLSKILTTDSF-RVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMV 217 (329)
Q Consensus 143 Eia---~-~~pt~~~ia~~d~~~~~~i~~~~~~~~~-~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~ 217 (329)
|=- . ..|--++. |.+.+..+.++++|++=.- .++..+|+.-.|+ .++-+|+-=++--
T Consensus 158 eG~a~~d~~~~~riV~-G~~~~~~~~~~~ly~~~~~~~~i~~~~~~~AEl-----------------~K~~~N~~~a~~I 219 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVG-GETEEAGEAVAELYAPIIEDGPVLVTSIETAEM-----------------IKLAENTFRAVKI 219 (411)
T ss_pred CCCCCCCCCCCCEEEE-ECCHHHHHHHHHHHHHHCCCCEEECCCHHHHHH-----------------HHHHHHHHHHHHH
T ss_conf 7472234236985999-684999999999999746598498258899999-----------------9999999999889
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCHHCCCEECHHHHHHHHHHHHHHCCCC
Q ss_conf 98999999998722544553200232101577644775300678775089070257296003199999999999982898
Q gi|254781039|r 218 QGLSEIMKLTEAMNGRADTILRLSGVGDLILTATSEQSRNFCFGIALGRGEKQNPDQIQLVEGAIAVSCVINISKKMGLK 297 (329)
Q Consensus 218 ~g~~Em~~l~~~~g~~~~t~~glaG~GDl~~T~~s~~SRN~~~G~~lg~g~~~~~~~~~~vEG~~~~~~i~~l~~~~~~~ 297 (329)
--++||..+++.+|.+...+...+|.-.-+-. +-.+-|.-+|-..-..+ ...+...+++++.+
T Consensus 220 sf~Nela~lce~~gid~~eV~~a~~~d~rig~------~~~~PG~G~GG~ClpkD-----------~~~l~~~a~~~g~~ 282 (411)
T TIGR03026 220 AFANELARICEALGIDVYEVIEAAGTDPRIGF------NFLNPGPGVGGHCIPKD-----------PLALIYKAKELGYN 282 (411)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC------CCCCCCCCCCCCCCCCC-----------HHHHHHHHHHCCCC
T ss_conf 99999999999856899999976178998777------78899799998755303-----------99999998873999
Q ss_pred CCHHHHHHHHHH
Q ss_conf 715999999980
Q gi|254781039|r 298 LPIFQAISDVMM 309 (329)
Q Consensus 298 ~Pi~~~v~~il~ 309 (329)
+|++.++.++=.
T Consensus 283 ~~l~~~a~~iN~ 294 (411)
T TIGR03026 283 PELIEAAREIND 294 (411)
T ss_pred CHHHHHHHHHHH
T ss_conf 149999999999
No 17
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.66 E-value=4.4e-14 Score=111.28 Aligned_cols=271 Identities=12% Similarity=0.112 Sum_probs=172.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
+||++||.|+||+++|..|.++| |+|++|.|+++..+.+.+.+.. .+.+..+...++|+||.++|.
T Consensus 2 MkIgfIGlG~MG~~ma~~L~~~G-~~v~v~dr~~~~~~~l~~~Ga~-------------~~~s~~e~~~~~dvvi~~l~~ 67 (295)
T PRK11559 2 MKVGFIGLGIMGKPMSKNLLKAG-YSLVVYDRNPEAIADVIAAGAE-------------TASTAKAIAEQCDVIITMLPN 67 (295)
T ss_pred CEEEEECCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCCC-------------CCCCHHHHHHCCCEEEEECCC
T ss_conf 78999840576999999999789-9589992999999999985992-------------039999998438878996689
Q ss_pred -HHHHHHH---HHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCHHH
Q ss_conf -7766655---553320356850552375200025854310123321001210012888178998765321246773178
Q gi|254781039|r 85 -KGYGEAL---NFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNID 160 (329)
Q Consensus 85 -~~~~~~l---~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~~ 160 (329)
..+++++ ..+.+..++++.+|.++-.- +.+- .-+.+.+....+.++-.|-.-.......-+-..+++-+.+
T Consensus 68 ~~~v~~v~~g~~gi~~~~~~g~iiid~sT~~-p~~~----~~~a~~~~~~g~~~lDaPVsGg~~~A~~G~L~~mvgG~~~ 142 (295)
T PRK11559 68 SPHVKEVALGENGIIEGAKPGTVLIDMSSIA-PLAS----REISEALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKA 142 (295)
T ss_pred CCCHHHHHHCCCCCHHCCCCCCEEEECCCCC-HHHH----HHHHHHHHHCCCEEEECCCCCCHHHHHHCCCEEEECCCHH
T ss_conf 8107766307766011389998899899999-9999----9999999965983894247688688984881499679889
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC
Q ss_conf 99999975341113899738861444400025677889975211003805789999998999999998722544553200
Q gi|254781039|r 161 ISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILRL 240 (329)
Q Consensus 161 ~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t~~gl 240 (329)
..+++..+|+.=.=++++--|+ | -..-+++-.|...+....++.|...|+++.|-++++++..
T Consensus 143 ~~~~~~piL~~~~~~i~~~G~~-G----------------~g~~~Kl~nN~l~~~~~~a~aEal~la~k~Gld~~~~~~v 205 (295)
T PRK11559 143 IFDKYYDLMKAMAGSVVHTGEI-G----------------AGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQA 205 (295)
T ss_pred HHHHHHHHHHCCCCCEEECCCC-C----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999994265560342894-5----------------8999999999999999999999999999859999999999
Q ss_pred CCCCEEEEEEECCCCCHHHH---HHHHHCCCCCCHHCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-------C
Q ss_conf 23210157764477530067---8775089070257296003199999999999982898715999999980-------7
Q gi|254781039|r 241 SGVGDLILTATSEQSRNFCF---GIALGRGEKQNPDQIQLVEGAIAVSCVINISKKMGLKLPIFQAISDVMM-------N 310 (329)
Q Consensus 241 aG~GDl~~T~~s~~SRN~~~---G~~lg~g~~~~~~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~il~-------~ 310 (329)
+..++. +++.+ +.++-.+.- .+ ...+--...-+..+.+++++.++.+|+...+.++.. +
T Consensus 206 -------l~~~~~--~S~~~~~~~p~~l~~d~-~~-~f~l~l~~KDl~l~~~~a~~~g~~lp~~~~~~~~~~~a~~~G~g 274 (295)
T PRK11559 206 -------IRGGLA--GSTVLDAKAPMVMDRNF-KP-GFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLG 274 (295)
T ss_pred -------HHCCCC--CCHHHHHHCCHHHCCCC-CC-CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf -------973765--78788601601223799-99-88589999899999999997099984999999999999977999
Q ss_pred CCCHHHHHHHHH
Q ss_conf 899899999984
Q gi|254781039|r 311 HISVDEALSILL 322 (329)
Q Consensus 311 ~~~~~~~i~~L~ 322 (329)
+.|....++.+.
T Consensus 275 ~~D~sal~~~~e 286 (295)
T PRK11559 275 TADHSALACYYE 286 (295)
T ss_pred CCCHHHHHHHHH
T ss_conf 878999999999
No 18
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=9.2e-14 Score=109.16 Aligned_cols=193 Identities=13% Similarity=0.162 Sum_probs=131.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE-CHHHHHHHHHHHC
Q ss_conf 8779997788789999999997799--818999449899999997789842279881787438973-1687755554411
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGL--ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS-DHTLLQNADIVLF 80 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~--~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~-~~~~l~~adiIii 80 (329)
|+||++||+|+||+||+..|.+++. +++.+..|+++..+.+.+.. ++.++. +.+.++++|+||+
T Consensus 2 m~kI~~IG~G~Mg~Aii~gl~~~~~~~~~i~v~~r~~~~~~~l~~~~-------------~v~~~~~~~~~~~~~diIiL 68 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY-------------GVRAATDNQEAAQEADVVVL 68 (267)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHH-------------CCEEECCHHHHHHCCCEEEE
T ss_conf 98799986689999999999977989452899779999999999973-------------96785786988721999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCC-CHH
Q ss_conf 2217776665555332035685055237520002585431012332100121001288817899876532124677-317
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSS-KNI 159 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~-~d~ 159 (329)
||+++.++++++++++++ ++.+||+.-|+..+ .+++.++...-.+-.-||.+..+.+|. |++.... .+.
T Consensus 69 aVKP~~~~~vl~~l~~~~--~~~iISv~AGi~i~-------~l~~~l~~~~~ivR~MPN~~~~v~~G~-t~i~~~~~~~~ 138 (267)
T PRK11880 69 AVKPQVMEDVLSELKGSL--DKLVVSIAAGITLA-------RLERALGADLPVVRAMPNTPALVGAGM-TALCANALVSE 138 (267)
T ss_pred EECHHHHHHHHHHHHHHH--CCEEEEECCCCCHH-------HHHHHHCCCCHHHHCCCCHHHHHCCCC-EEEECCCCCCH
T ss_conf 728789999999987650--87899916999999-------999886368703420874899970786-46625999999
Q ss_pred HHHHHHHHHHCCCCEEEEEC-CC-CC-EEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 89999997534111389973-88-61-44440002567788997521100380578999999899999999872254455
Q gi|254781039|r 160 DISRRLSKILTTDSFRVYCS-DD-RI-GVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADT 236 (329)
Q Consensus 160 ~~~~~i~~~~~~~~~~~~~s-~D-~~-GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t 236 (329)
+..+.+.++|+.----++.. ++ +. -.-++| .| -|++..-+..|..-+..+|-+.+.
T Consensus 139 ~~~~~v~~lf~~~G~~~~v~~E~~~d~~TalsG-----------------sG----PAy~~~~~eal~~a~v~~Gl~~~~ 197 (267)
T PRK11880 139 EQRAFALELLSAVGEVVWVDDESQMDAVTAVSG-----------------SG----PAYVFLFIEALADAGVKLGLPRET 197 (267)
T ss_pred HHHHHHHHHHHHCCCEEEECCHHCCCHHHHHHC-----------------CC----HHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 999999999972586799884210221134517-----------------71----799999999999999986997999
Q ss_pred HHHC
Q ss_conf 3200
Q gi|254781039|r 237 ILRL 240 (329)
Q Consensus 237 ~~gl 240 (329)
...+
T Consensus 198 A~~l 201 (267)
T PRK11880 198 ARKL 201 (267)
T ss_pred HHHH
T ss_conf 9999
No 19
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.60 E-value=5.5e-13 Score=104.13 Aligned_cols=264 Identities=16% Similarity=0.233 Sum_probs=155.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---CEEEEEECC-HHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHH
Q ss_conf 88779997788789999999997799---818999449-8999999977898422798817874389731-687755554
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGL---ANVTLLGRK-EILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADI 77 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~---~~V~l~~r~-~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adi 77 (329)
+|+||++||+|+||+||+..|.+.+. .++.+..|+ +...+.+.+.. .+..+.+ .+.+.++|+
T Consensus 2 ~mm~I~fIG~GnMg~Aii~gl~~~~~~~~~~i~v~~r~~~~~~~~l~~~~-------------~v~~~~~~~~~~~~~di 68 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY-------------GVKGTHNKKELLTDANI 68 (279)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH-------------CCEEECCHHHHHHHCCE
T ss_conf 97889998768999999999997879997579997898499999999971-------------96663777999844999
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCC-C
Q ss_conf 411221777666555533203568505523752000258543101233210012100128881789987653212467-7
Q gi|254781039|r 78 VLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILS-S 156 (329)
Q Consensus 78 Iiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia-~ 156 (329)
||+||+++.+.++++++++++.+++.|||+.-|+..+ -+++.++...-.+-.-||.+..+-++. |++... .
T Consensus 69 I~LaVKP~~~~~v~~~i~~~~~~~~~iISi~AGi~~~-------~l~~~l~~~~~ivR~MPN~~~~vg~g~-t~i~~~~~ 140 (279)
T PRK07679 69 LFLAMKPKDVAEALTPFKEYIHNNVLIISLLAGVSTH-------SIRNLLQKDVPIIRAMPNTSAAILKSA-TAISPSKH 140 (279)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH-------HHHHHCCCCCCEEEECCCHHHHHHCCC-EEECCCCC
T ss_conf 9995278999999999875458992999974788899-------999752999857983597678850577-35527999
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 31789999997534111389973886144440002567788997521100380578999999899999999872254455
Q gi|254781039|r 157 KNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADT 236 (329)
Q Consensus 157 ~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t 236 (329)
.+.+..+.+..+|+.----.+..++-. .. +-|+ -+.| -|++..-+.-|..-+..+|-+.++
T Consensus 141 ~~~~~~~~v~~lf~~~G~~~~v~E~~~--d~------~Tal-------sGSg----PAf~~~~~eal~~a~~~~Gl~~~~ 201 (279)
T PRK07679 141 ATAEHIQTAKALFETIGLVSVVEEEDM--HA------VTAL-------SGSG----PAYIYYVVEAMEEAAKKIGLKEDV 201 (279)
T ss_pred CCHHHHHHHHHHHHHCCEEEEECHHHC--CC------HHHE-------ECCH----HHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 999999999999961785999543330--32------1000-------1664----899999999999999983999999
Q ss_pred HHHCC-----CCCEEEEEEECCCCCHHHHHHHHHCCCCCCHHCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
Q ss_conf 32002-----3210157764477530067877508907025729600319999999999998289871599999998078
Q gi|254781039|r 237 ILRLS-----GVGDLILTATSEQSRNFCFGIALGRGEKQNPDQIQLVEGAIAVSCVINISKKMGLKLPIFQAISDVMMNH 311 (329)
Q Consensus 237 ~~gla-----G~GDl~~T~~s~~SRN~~~G~~lg~g~~~~~~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~il~~~ 311 (329)
...++ |.+-|... + +...... .++..+ -|=-|...+..| ++.+++-=+.+++.+-...-
T Consensus 202 A~~l~~~t~~G~a~ll~~--~----~~~p~~L--------~~~V~S-pgGtT~~gl~~L-e~~~~~~~i~~Av~aA~~Rs 265 (279)
T PRK07679 202 AKSLILQTMIGAAEMLKA--S----EKHPSIL--------RKEITS-PGGTTEAGIEVL-QEHKFQQALISCITQATQRS 265 (279)
T ss_pred HHHHHHHHHHHHHHHHHH--C----CCCHHHH--------HHHCCC-CCHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999984--6----9999999--------984689-946599999999-98881999999999999999
Q ss_pred CCHHHHHHHHH
Q ss_conf 99899999984
Q gi|254781039|r 312 ISVDEALSILL 322 (329)
Q Consensus 312 ~~~~~~i~~L~ 322 (329)
......++.|-
T Consensus 266 ~el~k~l~~~~ 276 (279)
T PRK07679 266 HNLGKTLEQLT 276 (279)
T ss_pred HHHHHHHHHHH
T ss_conf 99999987764
No 20
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.59 E-value=4.8e-13 Score=104.53 Aligned_cols=198 Identities=11% Similarity=0.159 Sum_probs=135.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE-ECHHHHHHHH
Q ss_conf 9888779997788789999999997799---81899944989999999778984227988178743897-3168775555
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGL---ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS-SDHTLLQNAD 76 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~---~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t-~~~~~l~~ad 76 (329)
|+ +||++||+|+||+||...|.+++. .++.+..|+.+..+.+.+.. .+... ++.+.++++|
T Consensus 1 M~--kkI~fIG~GnMg~Aii~Gl~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~~~e~~~~~D 65 (272)
T PRK12491 1 MN--KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY-------------GITITTNNNEVANSAD 65 (272)
T ss_pred CC--CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHC-------------CCEEECCHHHHHHHCC
T ss_conf 99--86999856799999999999788989676999697999999999971-------------9788668799973199
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 44112217776665555332035685055237520002585431012332100121001288817899876532124677
Q gi|254781039|r 77 IVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSS 156 (329)
Q Consensus 77 iIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~ 156 (329)
+||+||+++.+.++++++++++++++.|||...|+..+ .+++.++...-.+-.-||.+.++-+|. |++....
T Consensus 66 ii~LaVKP~~~~~vl~~l~~~~~~~~lviSi~AGi~i~-------~l~~~l~~~~~vvR~MPN~~a~v~~g~-t~i~~~~ 137 (272)
T PRK12491 66 ILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIK-------STENEFDRKLKVIRVMPNTPVLVGEGM-SALCFNE 137 (272)
T ss_pred EEEEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH-------HHHHHHCCCCCEEEECCCHHHHHCCCC-EEEECCC
T ss_conf 99999577899999999865526991899984899989-------999981899857997897699963696-5783499
Q ss_pred -CHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf -3178999999753411138997388614444000256778899752110038057899999989999999987225445
Q gi|254781039|r 157 -KNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRAD 235 (329)
Q Consensus 157 -~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~ 235 (329)
.+.+..+.+.++|+.----....++..- .+. |+ -+.| -|++..-+.-|..-+..+|-+.+
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~~~~E~~~d--~~T------al-------sGSg----PAy~~~~~eal~~a~v~~Gl~~~ 198 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTEVVNEKLMD--VVT------SI-------SGSS----PAYVYMFIEAMADAAVLGGMPRK 198 (272)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCHH--HHH------HH-------HCCH----HHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 89999999999997247649996353110--145------78-------3475----99999999999999998498999
Q ss_pred HHHHC
Q ss_conf 53200
Q gi|254781039|r 236 TILRL 240 (329)
Q Consensus 236 t~~gl 240 (329)
....+
T Consensus 199 ~A~~l 203 (272)
T PRK12491 199 QAYKF 203 (272)
T ss_pred HHHHH
T ss_conf 99999
No 21
>PRK07680 late competence protein ComER; Validated
Probab=99.55 E-value=7.2e-13 Score=103.37 Aligned_cols=195 Identities=14% Similarity=0.213 Sum_probs=129.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHC
Q ss_conf 779997788789999999997799---8189994498999999977898422798817874389731-687755554411
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGL---ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLF 80 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~---~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIii 80 (329)
+||++||+|+||+||+..|.+.+. +++.+..|+++..+.+.+.. + .+.++.+ .+.++++|+||+
T Consensus 1 MkI~fIG~GnMg~Aii~gl~~~~~~~~~~i~i~~r~~~~~~~l~~~~------~------~i~~~~~~~~~~~~~dvIiL 68 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESRAVKPSCLTITNRTPAKAYHIKEKY------P------SIHVAKTIEEVIEQSELIFI 68 (273)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHC------C------CEEEECCHHHHHHCCCEEEE
T ss_conf 98999876999999999999779989456999889989999999876------9------90886888999840998999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCC-CCHH
Q ss_conf 221777666555533203568505523752000258543101233210012100128881789987653212467-7317
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILS-SKNI 159 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia-~~d~ 159 (329)
||+++.+.++++++++++.+++.|||+.-|+..+ .+++.+|. ++ +-.-||.+..+..|. |.++.. ..+.
T Consensus 69 aVKPq~~~~vl~~i~~~~~~~~~iISi~AGisi~-------~l~~~~~~-~v-vR~MPN~~~~~~~G~-t~~~~~~~~~~ 138 (273)
T PRK07680 69 CVKPLDIYPLLKKLAPHFSDEKCLVSITSPISPE-------QLETLVPC-QV-ARIIPSITNRALSGA-SLVTFGNNCSE 138 (273)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH-------HHHHHCCC-CC-EEEECCCCHHHCCCE-EEEEECCCCCH
T ss_conf 6488889999999886347884899955888899-------99974799-81-588678860214332-79975899999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHCCCHHHHH
Q ss_conf 899999975341113899738861444400025677889975211003805789999998999999998-7225445532
Q gi|254781039|r 160 DISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTE-AMNGRADTIL 238 (329)
Q Consensus 160 ~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~-~~g~~~~t~~ 238 (329)
+..+.+.++|+.=---++..+|..- ++..+ . +.|. |++-.-+..|..-+. .+|-+.++..
T Consensus 139 ~~~~~v~~lf~~~G~~~~i~E~~~d------------~~tal-s--GSGP----Ay~~~~~eal~~a~v~~~Gl~~~~A~ 199 (273)
T PRK07680 139 EWQQKLLRLFKNISTPLVIEEDITR------------VASDI-V--SCGP----AFFSYLLQRFINAAVDKTNITKEEAT 199 (273)
T ss_pred HHHHHHHHHHHHCCEEEEECHHHHH------------HHHHH-H--CCCH----HHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999999738779998578876------------78886-1--6848----99999999999999998599999999
Q ss_pred HC
Q ss_conf 00
Q gi|254781039|r 239 RL 240 (329)
Q Consensus 239 gl 240 (329)
.+
T Consensus 200 ~l 201 (273)
T PRK07680 200 TL 201 (273)
T ss_pred HH
T ss_conf 99
No 22
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.53 E-value=9.7e-13 Score=102.52 Aligned_cols=198 Identities=17% Similarity=0.210 Sum_probs=131.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCC---EEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHH
Q ss_conf 98887799977887899999999977998---1899944-98999999977898422798817874389731-6877555
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLA---NVTLLGR-KEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNA 75 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~---~V~l~~r-~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~a 75 (329)
|-+.+||++||+|+||+||+..|.+++.. ++.+..| +.+..+.+.+.. .+..+++ .+.++++
T Consensus 1 m~~~~kI~fIG~GnMg~Aii~gll~~~~~~~~~i~v~~~~~~~~~~~l~~~~-------------~i~~~~~~~~~~~~~ 67 (245)
T PRK07634 1 MLTKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------------NVSTTTDWKQHVTSV 67 (245)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHC-------------CCEECCCHHHHHHHC
T ss_conf 9999919998758999999999997799996059996999999999999971-------------974227779998559
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 54411221777666555533203568505523752000258543101233210012100128881789987653212467
Q gi|254781039|r 76 DIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILS 155 (329)
Q Consensus 76 diIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia 155 (329)
|+||+|||++.+.+++++++++++ ++.|||+..|+..+ -+++.++.....+-.-||.+.++-++. |.++..
T Consensus 68 d~IilavKP~~~~~vl~~i~~~~~-~~~iISi~AGi~i~-------~l~~~l~~~~~v~R~MPN~~~~v~~g~-t~~~~~ 138 (245)
T PRK07634 68 DTIVLAMPPSAHEELLAELSPLLS-NQLVVTVAAGIGPS-------YLEERLPKGTPVAWIMPNTAAEIGKSI-SLYTMG 138 (245)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHC-CCEEEEEECCCCHH-------HHHHHCCCCCEEEEECCCHHHHHCCCC-EEEECC
T ss_conf 999999891749999999877606-98899981799899-------999874899728994585748975881-898538
Q ss_pred C-CHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 7-317899999975341113899738861444400025677889975211003805789999998999999998722544
Q gi|254781039|r 156 S-KNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRA 234 (329)
Q Consensus 156 ~-~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~ 234 (329)
. .+.+..+.+..+|+.----.+.++|-+-+ ..|+ -+.| -|++..-+..|.+-+...|-+.
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~v~E~~~d~--~Tal-------------sGSG----PAy~~~~~eal~~a~~~~Gl~~ 199 (245)
T PRK07634 139 QFVNETHQETLQLLLRGIGTSQLCTEEEVHQ--LTAV-------------TGSA----PAFLYYFAESLIEATKSYGVDE 199 (245)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCCC--EEEC-------------CCCC----HHHHHHHHHHHHHHHHHCCCCH
T ss_conf 8799999999999986285499976412462--4443-------------6770----9999999999999999829999
Q ss_pred HHHHH
Q ss_conf 55320
Q gi|254781039|r 235 DTILR 239 (329)
Q Consensus 235 ~t~~g 239 (329)
+....
T Consensus 200 ~~a~~ 204 (245)
T PRK07634 200 ATAKH 204 (245)
T ss_pred HHHHH
T ss_conf 99999
No 23
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.52 E-value=1.5e-13 Score=107.82 Aligned_cols=154 Identities=15% Similarity=0.199 Sum_probs=110.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---CEEEEEECCH-HHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH
Q ss_conf 8779997788789999999997799---8189994498-99999997789842279881787438973168775555441
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGL---ANVTLLGRKE-ILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVL 79 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~---~~V~l~~r~~-~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIi 79 (329)
|+||++||+|+||+||+..|.+++. .++.++.|++ +..+.+.+... .+...++.+.+.++|+||
T Consensus 1 M~kI~fIG~GnMg~Aii~Gll~~~~~~~~~i~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~dvIi 68 (275)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVITPEEIILYSRSENEHFKQLYDKYP------------TVALASNEELFTKCDHSF 68 (275)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCC------------CEEECCHHHHHHHCCEEE
T ss_conf 98899986789999999999978999963699978993899999998749------------536377799985499899
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCC-CCH
Q ss_conf 1221777666555533203568505523752000258543101233210012100128881789987653212467-731
Q gi|254781039|r 80 FATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILS-SKN 158 (329)
Q Consensus 80 iavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia-~~d 158 (329)
+|||++.+.++++++++++.+++.|||+..|+..++ +++..+. ++ +-.-||.+..+-+|. |++... ..+
T Consensus 69 laVKP~~~~~vl~~i~~~~~~~~~iISi~AGi~i~~-------l~~~~~~-~v-vRvMPNtpa~vg~Gv-t~~~~~~~~~ 138 (275)
T PRK06928 69 ICVPPLAVLPLMKDCAPVLTPDRHVVSIAAGVSLDD-------LLEITPG-QV-SRLIPSLTSAVGVGT-SLVAHAETVA 138 (275)
T ss_pred EEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH-------HHHHCCC-CE-EEEECCCCHHHCCCE-EEEECCCCCC
T ss_conf 997858799999997653279968999569998999-------9975799-83-797137327767842-8996289899
Q ss_pred HHHHHHHHHHHCCCCEEEEEC
Q ss_conf 789999997534111389973
Q gi|254781039|r 159 IDISRRLSKILTTDSFRVYCS 179 (329)
Q Consensus 159 ~~~~~~i~~~~~~~~~~~~~s 179 (329)
.+..+.+.++|+.----.+..
T Consensus 139 ~~~~~~v~~lf~~~G~v~~v~ 159 (275)
T PRK06928 139 EENKSRLEELLSAFSHVMTIR 159 (275)
T ss_pred HHHHHHHHHHHHHCCCEEEEC
T ss_conf 999999999998579713305
No 24
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.52 E-value=2.7e-13 Score=106.16 Aligned_cols=217 Identities=15% Similarity=0.101 Sum_probs=144.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC--C-----CCCEEEEECHHHHHHH
Q ss_conf 88779997788789999999997799818999449899999997789842279881--7-----8743897316877555
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIK--L-----SPLLNFSSDHTLLQNA 75 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~--l-----~~~i~~t~~~~~l~~a 75 (329)
+|+||+|+|.|..|..+|..|++.| |+|..++.|++.++.|++.. -|.+-|++. + ...+.++++ ..+|
T Consensus 2 ~~kkI~ViGlGYVGL~~a~~lA~~G-~~Vig~D~d~~kv~~l~~g~-~p~~Ep~l~~ll~~~~~~~~l~~t~~---~~~a 76 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQ-KQVIGVDINQHAVDTINRGE-IHIVEPDLDMVVKAAVEGGYLRATTT---PVPA 76 (415)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHCCC-CCCCCCCHHHHHHHHHHCCCCEEECC---HHHC
T ss_conf 9887999886877899999999688-94899989999999997868-99889898999999986598365257---4678
Q ss_pred HHHHCCCCHH----------HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHH----------HCCCEEC
Q ss_conf 5441122177----------7666555533203568505523752000258543101233210----------0121001
Q gi|254781039|r 76 DIVLFATSSK----------GYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLP----------SHSISVL 135 (329)
Q Consensus 76 diIiiavps~----------~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~----------~~~~~vl 135 (329)
|++|+|||+. .++++++.|.+++++++.+|.-|= +.++|...+...+.+..+ ...+.+.
T Consensus 77 d~iiI~V~TP~~~~~~~Dls~i~~a~~~I~~~l~~~~lVIi~ST-VppGTt~~i~~~l~~~~~~l~~~~~~~~~~d~~v~ 155 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLSYVEAAAKSIAPVLKKGDLVILEST-SPVGATEQMAEWLAEARPDLTFPQQAGEQADINIA 155 (415)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCC-CCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEE
T ss_conf 99999889997899972020188899999975268867996378-99971999999999855676512222667763798
Q ss_pred CCCCHHHHH---HH-HHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 288817899---87-65321246773178999999753411138997388614444000256778899752110038057
Q gi|254781039|r 136 SGPGFARDI---AQ-GLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSA 211 (329)
Q Consensus 136 sGPs~A~Ei---a~-~~pt~~~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~ 211 (329)
+-|-|-.|= .+ ..|.- ++++.+.+..+...+++++-.=.....+|+.-.|+ .++-+|+
T Consensus 156 ~~PErl~eG~a~~d~~~~~r-VIgg~~~~~~~~~~~ly~~~~~~~~~~t~~~~AEl-----------------~K~~~N~ 217 (415)
T PRK11064 156 YCPERVLPGQVMVELIKNDR-VIGGMTPVCSARASELYKIFLEGECVVTNSRTAEM-----------------CKLTENS 217 (415)
T ss_pred ECCCCCCCCCCCCCCCCCCE-EEECCCHHHHHHHHHHHHHHHCCCEEECCHHHHHH-----------------HHHHHHH
T ss_conf 58550467754211146872-57347889999999999997479889437899888-----------------7776788
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
Q ss_conf 89999998999999998722544553200232
Q gi|254781039|r 212 RAIVMVQGLSEIMKLTEAMNGRADTILRLSGV 243 (329)
Q Consensus 212 ~aal~~~g~~Em~~l~~~~g~~~~t~~glaG~ 243 (329)
-=++----.+||.++++.+|.+...+...+|.
T Consensus 218 ~ra~~Isf~NEla~lce~~gid~~evi~~~~~ 249 (415)
T PRK11064 218 FRDVNIAFANELSLICDDQGINVWELIRLANR 249 (415)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 99999999999999999809999999997288
No 25
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.48 E-value=2.4e-12 Score=99.91 Aligned_cols=197 Identities=16% Similarity=0.218 Sum_probs=138.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHC
Q ss_conf 8779997788789999999997799---8189994498999999977898422798817874389731687755554411
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGL---ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLF 80 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~---~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIii 80 (329)
|++|++||+|+||+||...|.+.+. .+|.+..|+++..+.+.++ ++ + . ..+++.+.+.++|+||+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~------~g-~----~-~~~~~~~~~~~advv~L 68 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE------YG-V----V-TTTDNQEAVEEADVVFL 68 (266)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHH------CC-C----C-CCCCHHHHHHHCCEEEE
T ss_conf 96589984688999999999966899802389837999999999998------49-8----5-56867988740898999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCC-CCCHH
Q ss_conf 22177766655553320356850552375200025854310123321001210012888178998765321246-77317
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVIL-SSKNI 159 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~i-a~~d~ 159 (329)
||+++.+++++.++++ +.+++.+||..-|+.. +.+++.++..+ .+-.-||.+..+.++. |.+.. ..-+.
T Consensus 69 avKPq~~~~vl~~l~~-~~~~~lvISiaAGv~~-------~~l~~~l~~~~-vvR~MPNt~a~vg~g~-t~i~~~~~~~~ 138 (266)
T COG0345 69 AVKPQDLEEVLSKLKP-LTKDKLVISIAAGVSI-------ETLERLLGGLR-VVRVMPNTPALVGAGV-TAISANANVSE 138 (266)
T ss_pred EECHHHHHHHHHHHHC-CCCCCEEEEEECCCCH-------HHHHHHCCCCC-EEEECCCHHHHHCCCC-EEEECCCCCCH
T ss_conf 8482768999997323-5688879997079979-------99998748996-6996788588971752-26513765898
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 89999997534111389973886144440002567788997521100380578999999899999999872254455320
Q gi|254781039|r 160 DISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILR 239 (329)
Q Consensus 160 ~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t~~g 239 (329)
+..+.+.++|++----++...+.. +.+ .++ -+.| -|++..-+..|.+-+..+|-.+++.+.
T Consensus 139 ~~~~~v~~l~~~~G~v~~v~E~~~---------da~---Tai---sGSg----PAyv~~~iEal~~agv~~Gl~~~~A~~ 199 (266)
T COG0345 139 EDKAFVEALLSAVGKVVEVEESLM---------DAV---TAL---SGSG----PAYVFLFIEALADAGVRLGLPREEARE 199 (266)
T ss_pred HHHHHHHHHHHHCCCEEEECHHHH---------HHH---HHH---HCCC----HHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 899999999982598699646771---------499---998---4486----899999999999999985999999999
Q ss_pred CC
Q ss_conf 02
Q gi|254781039|r 240 LS 241 (329)
Q Consensus 240 la 241 (329)
++
T Consensus 200 l~ 201 (266)
T COG0345 200 LA 201 (266)
T ss_pred HH
T ss_conf 99
No 26
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.46 E-value=1.5e-11 Score=94.81 Aligned_cols=260 Identities=17% Similarity=0.150 Sum_probs=172.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH-HHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 779997788789999999997799818999449899-9999977898422798817874389731687755554411221
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL-MQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~-~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
.||++||.|.||..+|..|.+.| |+|++|.|+++. .+.....+- ..+.+..++.+++|+||.++|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r~~~ka~~~~~~~Ga-------------~~a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNRTPEKAAELLAAAGA-------------TVAASPAEAAAEADVVITMLP 66 (286)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCC-------------EECCCHHHHHHHCCEEEEECC
T ss_conf 90799857352599999999779-8789980885665689997298-------------003889999961998999617
Q ss_pred H-HHHHHHH---HHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCHH
Q ss_conf 7-7766655---55332035685055237520002585431012332100121001288817899876532124677317
Q gi|254781039|r 84 S-KGYGEAL---NFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNI 159 (329)
Q Consensus 84 s-~~~~~~l---~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~ 159 (329)
. ..+++++ ..+.+.++++..+|.++- +.+.+-+.+.+.+++ .-+..+-.|-.-.......=|-++.++-+.
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmST-isp~~a~~~a~~~~~----~G~~~lDAPVsGg~~~A~~GtLtimvGG~~ 141 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVIDMST-ISPETARELAAALAA----KGLEFLDAPVSGGVPGAAAGTLTIMVGGDA 141 (286)
T ss_pred CHHHHHHHHHCCCCHHHCCCCCCEEEECCC-CCHHHHHHHHHHHHH----CCCCEEECCCCCCCHHHHHCCEEEEECCCH
T ss_conf 989999998185335333789978998789-998999999999996----698689467658831232071699947999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 89999997534111389973886144440002567788997521100380578999999899999999872254455320
Q gi|254781039|r 160 DISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILR 239 (329)
Q Consensus 160 ~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t~~g 239 (329)
+..++...+|+.=--++++--|. |. -...++-+|...+....++.|-..|+++.|-+++.++.
T Consensus 142 ~~f~r~~pvl~~~g~~i~~~G~~-G~----------------G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~ 204 (286)
T COG2084 142 EAFERAKPVLEAMGKNIVHVGPV-GA----------------GQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLE 204 (286)
T ss_pred HHHHHHHHHHHHHCCCEEEECCC-CH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99998899999860756987898-70----------------59999999999999999999999999980979899999
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCC-CCCCHHCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 0232101577644775300678775089-070257296003199999999999982898715999999980
Q gi|254781039|r 240 LSGVGDLILTATSEQSRNFCFGIALGRG-EKQNPDQIQLVEGAIAVSCVINISKKMGLKLPIFQAISDVMM 309 (329)
Q Consensus 240 laG~GDl~~T~~s~~SRN~~~G~~lg~g-~~~~~~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~il~ 309 (329)
.-.=| ...|....|+. .+..++ .+.. ..+-....-++.+.+.+++.+..+|+...+.++..
T Consensus 205 vi~~~----~~~s~~~e~~~--~~m~~~~~~p~---F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~ 266 (286)
T COG2084 205 VISGG----AAGSWILENYG--PRMLEGDFSPG---FAVDLMLKDLGLALDAAKELGAPLPLTALAAELYA 266 (286)
T ss_pred HHHCC----CCCCHHHHHHC--CHHHCCCCCCC---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 98535----56894888614--04426899963---26898886799999999963899827999999999
No 27
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=99.43 E-value=3.2e-13 Score=105.67 Aligned_cols=117 Identities=22% Similarity=0.340 Sum_probs=89.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCHHH
Q ss_conf 99977887899999999977998189994498999999977898422798817874389731687755554411221777
Q gi|254781039|r 7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSSKG 86 (329)
Q Consensus 7 I~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps~~ 86 (329)
|+|+|+|++|+.+|..|++.| ++|++|.|.+ ..+.+++++.......+-.........++.+....+|++|+|+++..
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag-~~V~lv~R~~-~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 78 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAG-HDVTLIARGR-HLEAIRENGLRITSPGGERTVPPPVATSASEELGPADLVIVAVKAYQ 78 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCC-CEEEEEECCC-HHHHHHHCCEEEEECCCCEEEECCEECCCHHHCCCCCEEEEEECCCC
T ss_conf 999966899999999999779-9289997563-67887749769994798389807410386576588679999722458
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 666555533203568505523752000258543101233210012
Q gi|254781039|r 87 YGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHS 131 (329)
Q Consensus 87 ~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~ 131 (329)
.+++++.++++++++.+++++..|+... |.+.+.+|..+
T Consensus 79 ~~~al~~l~~~l~~~t~iv~lqNG~g~~------e~l~~~~~~~~ 117 (150)
T pfam02558 79 TAEALEDLAPLLGPNTVVLLLQNGLGHE------EELREAFPRER 117 (150)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCHH------HHHHHHCCCCC
T ss_conf 8999999886528883899942587739------99998759987
No 28
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=99.41 E-value=8.9e-13 Score=102.75 Aligned_cols=93 Identities=25% Similarity=0.293 Sum_probs=75.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCHH
Q ss_conf 79997788789999999997799818999449899999997789842279881787438973168775555441122177
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSSK 85 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps~ 85 (329)
||+|||+|+||+||+..|.++|.+.+..+.|+++..+.+.+.. ...+...++.++++++|+||+|||++
T Consensus 1 KIg~IG~G~mg~ai~~~l~~~g~~~~~~~~r~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~DvIilavkp~ 69 (93)
T pfam03807 1 KIGIIGAGNMGEALARGLAAAGHEVIIANSRNPEKAAALAEEL-----------GVGATAVSNEEAAEEADVVILAVKPE 69 (93)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH-----------CCCCCCCCHHHHHHCCCEEEEEECHH
T ss_conf 9899970099999999999779961278648789999999981-----------99764589999974499899997999
Q ss_pred HHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 7666555533203568505523752
Q gi|254781039|r 86 GYGEALNFYSNWLKESAEIIICSKG 110 (329)
Q Consensus 86 ~~~~~l~~i~~~l~~~~~ii~~sKG 110 (329)
.+++++++++++++ ++.+||++.|
T Consensus 70 ~~~~vl~~i~~~~~-~k~vISv~aG 93 (93)
T pfam03807 70 DAPEVLAELADLLK-GKLVISITNG 93 (93)
T ss_pred HHHHHHHHHHHHCC-CCEEEEECCC
T ss_conf 99999998762508-9999980999
No 29
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.40 E-value=1.8e-11 Score=94.21 Aligned_cols=188 Identities=14% Similarity=0.115 Sum_probs=120.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHCC
Q ss_conf 779997788789999999997799--8189994498999999977898422798817874389731-6877555544112
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGL--ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLFA 81 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~--~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIiia 81 (329)
+||++||+|+||+|++..|.+.+. +++.+..|+++..+.+.+.. + .+.++.+ .+.++++|+||+|
T Consensus 1 MkIgfIG~GnMg~Aii~Gl~~~~~~~~~i~v~~r~~~~~~~l~~~~------~------~v~~~~~n~~~~~~~dvi~La 68 (255)
T PRK06476 1 MRIGFIGTGAITEAMVTGLLSSPADVSEIIVSPRNAQIAARLAARF------A------KVRIAKDNQAVVDRSDVVFLA 68 (255)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHC------C------CEEEECCHHHHHHHCCEEEEE
T ss_conf 9899986469999999999978899250889898989999999876------9------559857889998518878886
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 21777666555533203568505523752000258543101233210012100128881789987653212467731789
Q gi|254781039|r 82 TSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNIDI 161 (329)
Q Consensus 82 vps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~~~ 161 (329)
|+++.+++++++++ +.+++.|||..-|+..+ .+++.++...-.+-.-|+.+..+-++. |++ +.+.+
T Consensus 69 VKP~~~~~vl~~l~--~~~~~~vISi~AGi~i~-------~l~~~l~~~~~vvR~MPN~~~~~g~g~-t~i---~~~~~- 134 (255)
T PRK06476 69 VRPQIAEEVLRALR--FRPGQTVISVIAATTRA-------ALLKWIGADVKLVRAIPLPFVAERKGV-TAI---YPPDP- 134 (255)
T ss_pred ECHHHHHHHHHHHH--CCCCCEEEEECCCCCHH-------HHHHHHCCCCCEEEECCCCHHHHCCCC-EEE---CCCHH-
T ss_conf 17888998877620--57897899973787799-------999761899864885587088846886-221---48679-
Q ss_pred HHHHHHHHCCCCEEEEEC-CCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC
Q ss_conf 999997534111389973-8861444400025677889975211003805789999998999999998722544553200
Q gi|254781039|r 162 SRRLSKILTTDSFRVYCS-DDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILRL 240 (329)
Q Consensus 162 ~~~i~~~~~~~~~~~~~s-~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t~~gl 240 (329)
.+.++|+.----++.. ++. + +.++-+.| + -++++. -+.-|..-+..+|-+.+....+
T Consensus 135 --~v~~lf~~~G~~~~v~~E~~--------~-d~~ta~~g-------~---~~~~f~-~ieal~~a~v~~Gl~~~~A~~l 192 (255)
T PRK06476 135 --FVRALFDALGTAVECESEEE--------F-DLLAAASA-------L---MATYFG-ILETATQWLVEQGLERQKARAY 192 (255)
T ss_pred --HHHHHHHHCCCEEEECCHHH--------H-HHHHHHHC-------C---HHHHHH-HHHHHHHHHHHCCCCHHHHHHH
T ss_conf --99999983899899895788--------8-89999734-------5---189999-9999999999849999999999
No 30
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=99.35 E-value=6.3e-12 Score=97.24 Aligned_cols=149 Identities=19% Similarity=0.137 Sum_probs=96.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
|+||++||.|+||+++|..|.++| ++|..|+|+++..+.+.+.+.. .+.+..+.++++|+||+++|
T Consensus 1 M~~Ig~IGlG~MG~~ma~~L~~~g-~~v~v~d~~~~~~~~~~~~g~~-------------~~~s~~e~~~~~dvIi~~l~ 66 (163)
T pfam03446 1 MAKIGFIGLGVMGSPMALNLLKAG-YTVTVYNRTPEKVEELVAEGAV-------------AAASPAEAAASADVVITMVP 66 (163)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCCE-------------ECCCHHHHHHCCCEEEEECC
T ss_conf 988999836798999999999779-9699997978877999983995-------------53999999861999999258
Q ss_pred HH-HHHHHHHH---HHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCHH
Q ss_conf 77-76665555---332035685055237520002585431012332100121001288817899876532124677317
Q gi|254781039|r 84 SK-GYGEALNF---YSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNI 159 (329)
Q Consensus 84 s~-~~~~~l~~---i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~ 159 (329)
.. .+++++.. +.+.+++++.+|.++-.- +++-+ -+.+.+....+.++-.|-.-.......-+..++++-+.
T Consensus 67 ~~~~v~~V~~~~~gl~~~~~~g~iiid~sT~~-p~~~~----~~~~~~~~~g~~~lDaPVsGg~~~A~~G~L~~m~gG~~ 141 (163)
T pfam03446 67 AGAAVDAVIFGEDGLLPGLKPGDIIIDGSTIS-PDDTR----RLAKELKEKGIRFLDAPVSGGEEGAEAGTLSIMVGGDE 141 (163)
T ss_pred CHHHHHEEECCCCCHHHHCCCCCEEEECCCCC-HHHHH----HHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEEECCCH
T ss_conf 71454022026313323135898898679899-99999----99998753034434787768989994488799975899
Q ss_pred HHHHHHHHHHCC
Q ss_conf 899999975341
Q gi|254781039|r 160 DISRRLSKILTT 171 (329)
Q Consensus 160 ~~~~~i~~~~~~ 171 (329)
+..++++.+|+.
T Consensus 142 ~~~~~~~p~l~~ 153 (163)
T pfam03446 142 EAFERVKPILEA 153 (163)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 31
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.35 E-value=1.2e-11 Score=95.39 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=113.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
+||+|||.|-+|..||..|.+.| ++|.-|+|+++..+.-.+.+.- + .++.+.+.++++|+||+|+|.
T Consensus 2 mkI~IiGlGLIGgSla~al~~~~-~~V~g~d~~~~~~~~A~~~g~i----------d--~~~~~~~~~~~aDliila~Pv 68 (280)
T PRK07417 2 MNIGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIERGLV----------D--EASTDLSLLKDCDLVILALPI 68 (280)
T ss_pred CEEEEEECCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCCC----------C--EECCCHHHHCCCCEEEECCCH
T ss_conf 78999931857999999999689-9799997999999999986997----------5--202787460579989987974
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEC--CCCCCCCCCCCCCHHHHHHHHHCCCEE--CCCCCHHH-HHHHHHHHHCCCC-CCH
Q ss_conf 77666555533203568505523--752000258543101233210012100--12888178-9987653212467-731
Q gi|254781039|r 85 KGYGEALNFYSNWLKESAEIIIC--SKGFEYNSGMLLSSYSEKVLPSHSISV--LSGPGFAR-DIAQGLPVGVILS-SKN 158 (329)
Q Consensus 85 ~~~~~~l~~i~~~l~~~~~ii~~--sKGi~~~t~~~~se~i~~~~~~~~~~v--lsGPs~A~-Eia~~~pt~~~ia-~~d 158 (329)
..+.++++++.+++++++.|..+ +|+-... .+.+...++++.+|++- -+||..|. ++.++++..++-. ..+
T Consensus 69 ~~~~~~~~~~~~~l~~~~iitDv~SvK~~i~~---~~~~~~~~fVg~HPMAGsE~sG~~~a~~dLF~~~~~il~p~~~~~ 145 (280)
T PRK07417 69 GLLLPPSEELIPALPPEAIVTDVGSVKEPIVE---AWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTD 145 (280)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEECCCCCC
T ss_conf 77899999998647898489965223078999---998607986236980768887712034667507539985688899
Q ss_pred HHHHHHHHHHHCCCCEEEEEC
Q ss_conf 789999997534111389973
Q gi|254781039|r 159 IDISRRLSKILTTDSFRVYCS 179 (329)
Q Consensus 159 ~~~~~~i~~~~~~~~~~~~~s 179 (329)
.+..+.+.++++.---+++.-
T Consensus 146 ~~~~~~~~~l~~~lGa~~~~m 166 (280)
T PRK07417 146 LAALATVEELAVSLGSKIYTA 166 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEEC
T ss_conf 999999999999849999999
No 32
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=99.32 E-value=1.9e-11 Score=94.18 Aligned_cols=161 Identities=21% Similarity=0.262 Sum_probs=111.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC------CCCCEEEEEC-HHHHHHHHH
Q ss_conf 779997788789999999997799818999449899999997789842279881------7874389731-687755554
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIK------LSPLLNFSSD-HTLLQNADI 77 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~------l~~~i~~t~~-~~~l~~adi 77 (329)
+||+|+|.|..|..+|..|+++| |+|..|+.|++.++.||+.. .|-+-|++. +..++.++++ .+.+.++|+
T Consensus 1 MkI~ViGlGyVGl~~a~~la~~G-~~V~g~D~d~~~v~~ln~g~-~p~~E~~l~~~l~~~~~~~~~~~~~~~~~i~~~d~ 78 (185)
T pfam03721 1 MRIAVIGLGYVGLPTAVCLAEIG-HDVVGVDINQSKIDKLNNGK-IPIYEPGLEELLKANVSGRLRFTTDVAEAIKEADV 78 (185)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHCCC-CCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCE
T ss_conf 97999897874899999999489-93999979989999986268-97467588999987340896998787998844989
Q ss_pred HHCCCCHH----------HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCC-HHHHHH--HHHCCCEECCCCCHHHHH
Q ss_conf 41122177----------76665555332035685055237520002585431-012332--100121001288817899
Q gi|254781039|r 78 VLFATSSK----------GYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLS-SYSEKV--LPSHSISVLSGPGFARDI 144 (329)
Q Consensus 78 Iiiavps~----------~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~s-e~i~~~--~~~~~~~vlsGPs~A~Ei 144 (329)
+|+|||+. .+.++++.+.+++++++.+|.-|= +.+++-..+. .++++. .....+.+..-|-|-.|=
T Consensus 79 i~I~VpTP~~~~~~~d~s~l~~~~~~i~~~l~~~~liii~ST-VppGtt~~~~~~l~~~~~~~~~~d~~l~~~PErl~~G 157 (185)
T pfam03721 79 IFIAVPTPSKKGGAPDLTYVESAARTIGPVLKKGKVVVVKST-VPPGTTEEVVKPILEKRSGKKAVDFNVASNPEFLREG 157 (185)
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCHHHHHHHHHHHCCCCCCCCEEEEECHHHCCCC
T ss_conf 999736876557676635999999999744679989999189-9988689999999997266778744898783323664
Q ss_pred ---H-HHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ---8-76532124677317899999975
Q gi|254781039|r 145 ---A-QGLPVGVILSSKNIDISRRLSKI 168 (329)
Q Consensus 145 ---a-~~~pt~~~ia~~d~~~~~~i~~~ 168 (329)
. -..|--+++++.+....+.++++
T Consensus 158 ~a~~d~~~~~riv~G~~~~~~~~~~~~l 185 (185)
T pfam03721 158 NAIHDLLNPDRVVIGVTEECAEERLAEL 185 (185)
T ss_pred CHHHHCCCCCEEEEECCCHHHHHHHHHC
T ss_conf 2233316999799907808999999609
No 33
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.29 E-value=8e-11 Score=90.05 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=112.2
Q ss_pred CCC--CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHH
Q ss_conf 988--8779997788789999999997799-8189994498999999977898422798817874389731687755554
Q gi|254781039|r 1 MKN--YSTIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADI 77 (329)
Q Consensus 1 M~~--~~kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adi 77 (329)
|++ ++||+|||.|-+|..||..|.++|. .+|..|+++++..+...+.+.-.. ...+..+.+.++|+
T Consensus 1 ~~~~~f~~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~A~~~g~id~-----------~~~~~~e~~~~~Dl 69 (307)
T PRK07502 1 MSAPLFDRVALIGLGLIGSSLARAIRRQGLAGEIVGAARSAETRARARELGLGDR-----------VTTSAAEAVKGADL 69 (307)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCH-----------HCCCHHHHHCCCCE
T ss_conf 9856456689992787999999999854998579998499999999998699751-----------12777664045897
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCEEEC--CCCCCCCCC-CCCCHHHHHHHHHCCCEE--CCCCCHHH-HHHHHHHHH
Q ss_conf 411221777666555533203568505523--752000258-543101233210012100--12888178-998765321
Q gi|254781039|r 78 VLFATSSKGYGEALNFYSNWLKESAEIIIC--SKGFEYNSG-MLLSSYSEKVLPSHSISV--LSGPGFAR-DIAQGLPVG 151 (329)
Q Consensus 78 Iiiavps~~~~~~l~~i~~~l~~~~~ii~~--sKGi~~~t~-~~~se~i~~~~~~~~~~v--lsGPs~A~-Eia~~~pt~ 151 (329)
||+|+|...+.++++++.+++++++.|..+ +|+-..... ..+.+-+ ++++.+|++- -+||-.|. ++.+++++-
T Consensus 70 IilatPv~~~~~vl~~l~~~l~~~~ivTDvgSvK~~I~~~~~~~~~~~~-~FVg~HPmAGsE~sG~~~A~~~LF~~~~~i 148 (307)
T PRK07502 70 VILCVPVGASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGV-HFIPGHPLAGTEHSGPDAGFAELFENRWCI 148 (307)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCC-CEECCCCCCCCCCCCCCHHHHHHHCCCEEE
T ss_conf 9991789999999999985558996899663211899999998567778-367268876788755101001474387089
Q ss_pred CCC-CCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 246-773178999999753411138997
Q gi|254781039|r 152 VIL-SSKNIDISRRLSKILTTDSFRVYC 178 (329)
Q Consensus 152 ~~i-a~~d~~~~~~i~~~~~~~~~~~~~ 178 (329)
++= ...+.+..+.+.++++.=--++..
T Consensus 149 ltp~~~~~~~~~~~v~~lw~~lGa~v~~ 176 (307)
T PRK07502 149 LTPPEGTDPAAVARLRAFWRALGARVEE 176 (307)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9679999999999999999963987999
No 34
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.27 E-value=4.1e-11 Score=91.98 Aligned_cols=159 Identities=19% Similarity=0.206 Sum_probs=106.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC
Q ss_conf 8779997788789999999997799818999449-899999997789842279881787438973168775555441122
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK-EILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT 82 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~-~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav 82 (329)
|++|+|+|+|++|++||..|++.| |+|.+-.|+ ++..+...+.. -+.+...+..++.+.+|+||++|
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r~~~~~~a~a~~l-----------~~~i~~~~~~dA~~~aDVVvLAV 68 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG-HEVIIGSSRGPKALAAAAAAL-----------GPLITGGSNEDAAALADVVVLAV 68 (211)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHH-----------CCCCCCCCHHHHHHCCCEEEEEC
T ss_conf 917999625718789999999679-739996478806788999864-----------56533477688884399899954
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCC--C--------CCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHH----H
Q ss_conf 1777666555533203568505523752000--2--------585431012332100121001288817899876----5
Q gi|254781039|r 83 SSKGYGEALNFYSNWLKESAEIIICSKGFEY--N--------SGMLLSSYSEKVLPSHSISVLSGPGFARDIAQG----L 148 (329)
Q Consensus 83 ps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~--~--------t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~----~ 148 (329)
|-..+.+++++++..+. ++++|+++..+++ . .....+|++.+.+|..+++------+|..+... .
T Consensus 69 P~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~ 147 (211)
T COG2085 69 PFEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGG 147 (211)
T ss_pred CHHHHHHHHHHHHHHHC-CEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCHHHHCCCCCCCC
T ss_conf 57877769999998709-90999668875446883010368888859999999779830146550357877313777687
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 321246773178999999753411138
Q gi|254781039|r 149 PVGVILSSKNIDISRRLSKILTTDSFR 175 (329)
Q Consensus 149 pt~~~ia~~d~~~~~~i~~~~~~~~~~ 175 (329)
-+.+-+||.|.+-.+.+.++.+.--|+
T Consensus 148 ~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 148 RRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 566898459499999999999962966
No 35
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.27 E-value=2.6e-11 Score=93.21 Aligned_cols=154 Identities=16% Similarity=0.279 Sum_probs=103.6
Q ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE-ECHHHHHHHHHHHCCC
Q ss_conf 779997-78878999999999779981899944989999999778984227988178743897-3168775555441122
Q gi|254781039|r 5 STIFVI-GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS-SDHTLLQNADIVLFAT 82 (329)
Q Consensus 5 ~kI~Vi-GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t-~~~~~l~~adiIiiav 82 (329)
+||+|| |.|.||..+|..|...| ++|.+|+||.+..+.+.+. . | +..+ +..+++.++|+|+++|
T Consensus 1 mkI~IIGG~G~MG~~Fa~~f~~sG-yeV~I~gRd~~k~~~va~~-L------G------v~~~~~~~e~~~~advVIvsV 66 (441)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKDKG-YEVIVWGRDPKKGKEVAKE-L------G------VEYASDNIDAAKDGDIVIVSV 66 (441)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHH-H------C------CCCCCCHHHHHHCCCEEEEEC
T ss_conf 979999479817799999998679-8899981573135678887-3------8------622244788972499999984
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHC-CCEE---CCCCCHHHHHHHHHHHHCCC--CC
Q ss_conf 177766655553320356850552375200025854310123321001-2100---12888178998765321246--77
Q gi|254781039|r 83 SSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSH-SISV---LSGPGFARDIAQGLPVGVIL--SS 156 (329)
Q Consensus 83 ps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~-~~~v---lsGPs~A~Eia~~~pt~~~i--a~ 156 (329)
|-....++++++.|++++++.++.++ +....+.+...+..|.. ++.. +-||.... + .++ +-++. -+
T Consensus 67 PI~~T~~VI~~laP~l~~~~lL~Dit-----SvK~~p~~aMl~~~~~~~~viglHPMFGP~v~s-l-~gQ-vVVvcP~~~ 138 (441)
T PRK08655 67 PINVTEDVIREVAPHVKEGSLLMDVT-----SVKERPVEAMKEFAPEGVEILPTHPMFGPRTPS-L-RGQ-VVILTPTEK 138 (441)
T ss_pred CHHHHHHHHHHHHCCCCCCCEEEECC-----CCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCC-C-CCC-EEEEECCCC
T ss_conf 88999999999742489996999831-----041779999997565788774548887999866-5-788-899963898
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 317899999975341113899738
Q gi|254781039|r 157 KNIDISRRLSKILTTDSFRVYCSD 180 (329)
Q Consensus 157 ~d~~~~~~i~~~~~~~~~~~~~s~ 180 (329)
.+.+....+.+.|...-.++..++
T Consensus 139 ~~~~~~~~l~~~l~~~Ga~v~~~t 162 (441)
T PRK08655 139 RSNPWFPKVRNFLEEEGARVIITT 162 (441)
T ss_pred CCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 771779999999997798899948
No 36
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.23 E-value=2.5e-10 Score=86.82 Aligned_cols=159 Identities=19% Similarity=0.204 Sum_probs=106.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 779997788789999999997799-8189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
+||+|||.|-||..||..|.+++. .+|..|+++++..+...+.+.- + ...+.+.++++|+||+|+|
T Consensus 1 M~I~IiGlGLiGgSla~alk~~~~~~~V~g~d~~~~~~~~A~~~g~i----------d---~~~~~~~i~~aDlVila~P 67 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKENKLISCVYGYDHNEEHEKDALDLGLV----------D---EIVEFEEIKECDVIFLAIP 67 (275)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCC----------C---CCCCHHHCCCCCEEEEECC
T ss_conf 98999900878999999999509986799995999999999986998----------6---1067312365798999176
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEC--CCCCCCCCCCCCCHHHHHHHHHCCCEE--CCCCCHHH-HHHHHHHHHCCCC-CC
Q ss_conf 777666555533203568505523--752000258543101233210012100--12888178-9987653212467-73
Q gi|254781039|r 84 SKGYGEALNFYSNWLKESAEIIIC--SKGFEYNSGMLLSSYSEKVLPSHSISV--LSGPGFAR-DIAQGLPVGVILS-SK 157 (329)
Q Consensus 84 s~~~~~~l~~i~~~l~~~~~ii~~--sKGi~~~t~~~~se~i~~~~~~~~~~v--lsGPs~A~-Eia~~~pt~~~ia-~~ 157 (329)
...+.++++++.+ ++++..|..+ +|+-.... .....-.++++.+|++- -+||..|. ++.++++..++=. ..
T Consensus 68 v~~~~~~l~~l~~-l~~~~iitDv~SvK~~i~~~--~~~~~~~~fVg~HPmAGsE~sG~~~a~~~LF~~~~~il~p~~~~ 144 (275)
T PRK08507 68 VDAIIEILQKLLD-IKENTTIIDLGSTKAKIIES--IPKSIRKNFIAAHPMTGTEFSGPKAAFKGLYKGAVVVLCDLEKS 144 (275)
T ss_pred HHHHHHHHHHHHH-CCCCCEEEECCCHHHHHHHH--HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999999999860-46788898343128999999--98625688443499788875445441077853985999688889
Q ss_pred HHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 1789999997534111389973
Q gi|254781039|r 158 NIDISRRLSKILTTDSFRVYCS 179 (329)
Q Consensus 158 d~~~~~~i~~~~~~~~~~~~~s 179 (329)
+.+..+.+.++++.--.+++.-
T Consensus 145 ~~~~~~~~~~l~~~lGa~~~~~ 166 (275)
T PRK08507 145 GEKHQERAKEIFSGIGMKIVFM 166 (275)
T ss_pred CHHHHHHHHHHHHHCCCEEEEC
T ss_conf 7999999999999819978874
No 37
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.13 E-value=3.8e-09 Score=79.17 Aligned_cols=266 Identities=17% Similarity=0.168 Sum_probs=150.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHH---HHHCC
Q ss_conf 779997788789999999997799818999449899999997789842279881787438973168775555---44112
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNAD---IVLFA 81 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~ad---iIiia 81 (329)
+||++||.|.||..+|..|.++| ++|..|.|+++.++.+.+.+.. .+.+..+.+..+| +|+++
T Consensus 1 MkIGfIGLG~MG~~mA~nL~~~G-~~V~v~dr~~~~~~~~~~~ga~-------------~~~s~~e~~~~~d~prvI~l~ 66 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG-HEVVGYDRNPEAVEALAAEGAT-------------GAASLEELVAKLPAPRVVWLM 66 (301)
T ss_pred CEEEEECHHHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHCCCE-------------ECCCHHHHHHHCCCCCEEEEE
T ss_conf 97999834587999999999689-9079976999999999985994-------------329999999707888779998
Q ss_pred CCH-HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEC----C-CCCHHHHHHHHHHHHCCCC
Q ss_conf 217-776665555332035685055237520002585431012332100121001----2-8881789987653212467
Q gi|254781039|r 82 TSS-KGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVL----S-GPGFARDIAQGLPVGVILS 155 (329)
Q Consensus 82 vps-~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vl----s-GPs~A~Eia~~~pt~~~ia 155 (329)
+|+ ..+++++..+.++++++..+|.++--...++ .-..+.+....+.++ | ||.=|. .| ++ +. +
T Consensus 67 lp~~~~Vd~Vi~~l~~~l~~g~iiID~sts~~~~t-----~~~a~~l~~~gi~flDapVSGG~~gA~---~G-ls-iM-v 135 (301)
T PRK09599 67 VPAGEITDSTIDELAPLLEAGDIVIDGGNSYYKDD-----IRRAELLAEKGIHFVDVGTSGGVWGLE---RG-YC-LM-I 135 (301)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHH-----HHHHHHHHHCCCCEECCCCCCCHHHHH---CC-CE-EE-E
T ss_conf 17970389999999962789988870899983889-----999999998599454476678877885---58-61-33-0
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC--CC
Q ss_conf 7317899999975341113899738861444400025677889975211003805789999998999999998722--54
Q gi|254781039|r 156 SKNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMN--GR 233 (329)
Q Consensus 156 ~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g--~~ 233 (329)
+-+++..++++.+|+.=.-++ + .|+-.+|. .++| .-.++=+|....-.-+++.|...|.++.+ -+
T Consensus 136 GG~~~~~e~~~Pil~aia~~~---~--~~~~~~G~------~GaG--h~vKmVhNgIey~~mq~iaE~~~ll~~~~~~~d 202 (301)
T PRK09599 136 GGDKEAVERLEPIFKALAPRA---E--DGYLHAGP------VGAG--HFVKMVHNGIEYGMMQAYAEGFELLEASRFDLD 202 (301)
T ss_pred CCCHHHHHHHHHHHHHHHCCC---C--CCEEEECC------CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 698999999899999983345---7--78045789------8823--899999999999999999999999986678878
Q ss_pred HHHHHHCCCCCEEEEEEECCCCCHHHHHHH-----HHCCCCCC---HHCCCEECHHHHHHHHHHHHHHCCCCCC-HHHHH
Q ss_conf 455320023210157764477530067877-----50890702---5729600319999999999998289871-59999
Q gi|254781039|r 234 ADTILRLSGVGDLILTATSEQSRNFCFGIA-----LGRGEKQN---PDQIQLVEGAIAVSCVINISKKMGLKLP-IFQAI 304 (329)
Q Consensus 234 ~~t~~glaG~GDl~~T~~s~~SRN~~~G~~-----lg~g~~~~---~~~~~~vEG~~~~~~i~~l~~~~~~~~P-i~~~v 304 (329)
.+.++.. +- ..|.-+.|=.. +.+..... ..-.+.=+|.-|++...+ +++..| |..++
T Consensus 203 ~~~v~~~------w~----~g~~~~S~L~ei~~~~l~~~~~ld~i~~~~~~~gtG~wt~~~a~~----lgvp~p~i~~a~ 268 (301)
T PRK09599 203 LAAVAEV------WR----RGSVIRSWLLDLTADALAEDPKLDEISGYVADSGEGRWTVEAAIE----LGVPAPVIAAAL 268 (301)
T ss_pred HHHHHHH------HH----CCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHH----CCCCHHHHHHHH
T ss_conf 9999999------85----688211389999999971188542214612678718999999998----599858999999
Q ss_pred HH-HHHCC--CCHHHHHHHHH
Q ss_conf 99-98078--99899999984
Q gi|254781039|r 305 SD-VMMNH--ISVDEALSILL 322 (329)
Q Consensus 305 ~~-il~~~--~~~~~~i~~L~ 322 (329)
+. ..... .--...+..|+
T Consensus 269 ~aR~~S~~~~~~~~k~~sa~r 289 (301)
T PRK09599 269 FARFRSRQEDSFADKVLAALR 289 (301)
T ss_pred HHHHHHCCCCCHHHHHHHHHH
T ss_conf 999984667650565999988
No 38
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.12 E-value=2.8e-10 Score=86.53 Aligned_cols=112 Identities=18% Similarity=0.160 Sum_probs=83.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC-------CCCCCCCCCC---CCCCCEEEEECHH
Q ss_conf 98887799977887899999999977998189994498999999977-------8984227988---1787438973168
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT-------RINAKALPGI---KLSPLLNFSSDHT 70 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~-------~~n~~~lp~i---~l~~~i~~t~~~~ 70 (329)
|.+++||+|||||.||+.+|..++..| ++|.+|+++++..+...+. ......+..- ..-.++..+++.+
T Consensus 1 M~~ik~VaViGAG~MG~giA~~~a~~G-~~V~l~D~~~e~~~~~~~~i~~~l~~~~~~~~l~~~~~~~~l~~i~~~~~~~ 79 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAG-YDVLLNDVSADRLESGMATINGNLARQVAKGKISEEARAAALARITTATTLD 79 (292)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 999888999896699999999999679-9689997988999999999999999999706888899999984077768988
Q ss_pred HHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 775555441122177--7666555533203568505523752000
Q gi|254781039|r 71 LLQNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEY 113 (329)
Q Consensus 71 ~l~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~ 113 (329)
.+.+||+||-|+|-. .=+++++++.++.++++++.|-|-+|..
T Consensus 80 ~~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~i 124 (292)
T PRK07530 80 DLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILASNTSSISI 124 (292)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 966499999888474587898999998626988489875888750
No 39
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.10 E-value=1.8e-09 Score=81.33 Aligned_cols=212 Identities=15% Similarity=0.113 Sum_probs=141.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC-------CCCCEEEEECHHHHHHHHH
Q ss_conf 779997788789999999997799818999449899999997789842279881-------7874389731687755554
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIK-------LSPLLNFSSDHTLLQNADI 77 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~-------l~~~i~~t~~~~~l~~adi 77 (329)
.+|+|+|-|..|..+|..++++| .+|.-++.|+..++.+|+.+.+.. .|+.. -...+++|++.+.++.||+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G-~~ViG~DIn~~~Vd~ln~G~~~i~-e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv 87 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAG-FKVIGVDINQKKVDKLNRGESYIE-EPDLDEVVKEAVESGKLRATTDPEELKECDV 87 (436)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-CCEEEEECCHHHHHHHHCCCCEEE-CCCHHHHHHHHHHCCCCEEECCHHHCCCCCE
T ss_conf 28999824644578899998769-955757578899888757864254-6868899999986397157568556254888
Q ss_pred HHCCCCHH----------HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHH----CCCEECC-----CC
Q ss_conf 41122177----------76665555332035685055237520002585431012332100----1210012-----88
Q gi|254781039|r 78 VLFATSSK----------GYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPS----HSISVLS-----GP 138 (329)
Q Consensus 78 Iiiavps~----------~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~----~~~~vls-----GP 138 (329)
+++|||+. ++++..+.|.++|+++..+|.=|- .-++|-.-+...+.+..+. ..+.+-. -|
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST-~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~P 166 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST-TPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
T ss_conf 999935776789998848999999999975677888999647-8998578889999850689765640468607332189
Q ss_pred -CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf -8178998765321246773178999999753411138997388614444000256778899752110038057899999
Q gi|254781039|r 139 -GFARDIAQGLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMV 217 (329)
Q Consensus 139 -s~A~Eia~~~pt~~~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~ 217 (329)
+.-.|+. -..=++++.+.+.++..+.++++=--.+.+-+|..-.|.+--+-|+| |..=|.
T Consensus 167 G~~~~el~---~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~f----------------RdVNIA 227 (436)
T COG0677 167 GNVLKELV---NNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTF----------------RDVNIA 227 (436)
T ss_pred CCHHHHHH---CCCCEEECCCHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHH----------------HHHHHH
T ss_conf 86002020---17823536888999999999998617799757747999999886334----------------677899
Q ss_pred HHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 9899999999872254455320
Q gi|254781039|r 218 QGLSEIMKLTEAMNGRADTILR 239 (329)
Q Consensus 218 ~g~~Em~~l~~~~g~~~~t~~g 239 (329)
-.+||..++++||-+.--+..
T Consensus 228 -LaNElali~~~~GIdvwevIe 248 (436)
T COG0677 228 -LANELALICNAMGIDVWEVIE 248 (436)
T ss_pred -HHHHHHHHHHHHCCCHHHHHH
T ss_conf -999999999982986999999
No 40
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.09 E-value=1.3e-09 Score=82.30 Aligned_cols=168 Identities=17% Similarity=0.224 Sum_probs=104.2
Q ss_pred CCC-CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHH----HHHCCCCCCCCCCC--CCCCCEEEEECHHHHH
Q ss_conf 988-8779997788789999999997799818999449899999----99778984227988--1787438973168775
Q gi|254781039|r 1 MKN-YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQ----LEDTRINAKALPGI--KLSPLLNFSSDHTLLQ 73 (329)
Q Consensus 1 M~~-~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~----i~~~~~n~~~lp~i--~l~~~i~~t~~~~~l~ 73 (329)
|.+ ++||+|||+|.||+.+|..++.+| .+|.+|+++++..+. |.+.- .++.++- ....+++++++.+++.
T Consensus 1 M~~~Ik~VaViGAG~MG~gIA~~~a~~G-~~V~l~D~~~~~l~~~~~~i~~~l--~~~~~~~~~~~~~~i~~~~~l~a~~ 77 (310)
T PRK06130 1 MDNPIQNLAIIGAGAMGSGIAALFASKG-LDVVLIDPMPGALERAAQVIERQL--GVYAPGAIAGTLQRIRMDAGLEAAC 77 (310)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHEEECCCHHHHC
T ss_conf 9899888989787799999999998589-988999799999999999999986--5327666999874102137888966
Q ss_pred HHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEE--CCCCCHH---HHHHH
Q ss_conf 555441122177--7666555533203568505523752000258543101233210012100--1288817---89987
Q gi|254781039|r 74 NADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISV--LSGPGFA---RDIAQ 146 (329)
Q Consensus 74 ~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~v--lsGPs~A---~Eia~ 146 (329)
+||+||-|+|-. .-+++++++..+.++++++.|-|-+|. ++++.+..-...++.. .-.|.+. -||..
T Consensus 78 ~aDlViEav~E~l~iK~~lf~~le~~~~~~~IlASNTSsl~------is~ia~~~~~p~R~ig~HffnP~~~m~LVEIv~ 151 (310)
T PRK06130 78 GADLVIEAVPEKLDLKRDIFARLDTLCDPQTIFATNTSGLS------INAIAQAVTRRERFVGTHFFTPADVIPLVEVVR 151 (310)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC------CHHHHHHCCCHHHEEEEEECCCCCCCCCEEECC
T ss_conf 89999988817789999999998606898838996488776------067888638987815544437767766652237
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCE
Q ss_conf 653212467731789999997534111-38997388614
Q gi|254781039|r 147 GLPVGVILSSKNIDISRRLSKILTTDS-FRVYCSDDRIG 184 (329)
Q Consensus 147 ~~pt~~~ia~~d~~~~~~i~~~~~~~~-~~~~~s~D~~G 184 (329)
+.- ++.++...+.++...-. --+....|.-|
T Consensus 152 g~~-------Ts~~~~~~~~~~~~~~gk~pvvv~kd~pG 183 (310)
T PRK06130 152 NDD-------TSPQTVATVMAMLRSIGKRPVLVKKDIPG 183 (310)
T ss_pred CCC-------CCHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 898-------98999999999999719879998866588
No 41
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.07 E-value=8.8e-10 Score=83.30 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=80.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH----C---CCCCCCCCCC---CCCCCEEEEECHHHH
Q ss_conf 88779997788789999999997799818999449899999997----7---8984227988---178743897316877
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED----T---RINAKALPGI---KLSPLLNFSSDHTLL 72 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~----~---~~n~~~lp~i---~l~~~i~~t~~~~~l 72 (329)
+++||+|||+|.||..+|..++..| ++|.+|+++++..+.-.+ . ......+..- ....++..+++.+++
T Consensus 2 ~i~~VaViGaG~mG~~IA~~~a~~G-~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~ 80 (282)
T PRK05808 2 SIQKIGVIGAGTMGNGIAQVCAVAG-YDVVMVDISDEAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDL 80 (282)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 7268999897889999999999579-938999799899999999999999999970886426699999526366888896
Q ss_pred HHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 5555441122177--766655553320356850552375200
Q gi|254781039|r 73 QNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 73 ~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
.+||+||-|||-. .=+++++++.++.++++++.|-|-+|.
T Consensus 81 ~~aDlViEav~E~l~iK~~vf~~le~~~~~~~IlaSnTSsl~ 122 (282)
T PRK05808 81 KDADLVIEAAVENMDIKKKIFAQLDEIAKPEAILATNTSSLS 122 (282)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 759999987756345569999999955799848997588776
No 42
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.05 E-value=1.4e-09 Score=82.03 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=81.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC-------CCCCCCCCCCCCEEEEEC-HHHH
Q ss_conf 98887799977887899999999977998189994498999999977898-------422798817874389731-6877
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRIN-------AKALPGIKLSPLLNFSSD-HTLL 72 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n-------~~~lp~i~l~~~i~~t~~-~~~l 72 (329)
|+++++|+|||+|.||+.+|..++.+| ++|.+|+++++..+.+.+.=.+ ....|+ ....+++++++ .+++
T Consensus 4 m~~Ik~VaVIGaG~MG~giAa~~a~~G-~~V~l~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~-~~~~~l~~~~~l~~av 81 (321)
T PRK07066 4 ITDIKTFAAIGSGVIGSGWVARALAHG-LDVVAWDPAPGAEAALRANVANAWPALERQGLAPG-ASPARLRFVATIEACV 81 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHCCCCHHHHH
T ss_conf 257887999888788899999999479-85999969888999999999999999986689963-1696501468889986
Q ss_pred HHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 5555441122177--7666555533203568505523752000
Q gi|254781039|r 73 QNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEY 113 (329)
Q Consensus 73 ~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~ 113 (329)
.++|+|+-++|-. .=+++++++.++.+++++|.|-|-||..
T Consensus 82 ~~aD~ViEavpE~l~lK~~lf~~ld~~~~~~aIiASnTS~l~i 124 (321)
T PRK07066 82 ADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLP 124 (321)
T ss_pred CCCCEEEECCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf 3599899877665999999999999767988678525765789
No 43
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.03 E-value=1.4e-09 Score=81.88 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=101.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH----HHCCC------CCCCCCCC---CCCCCEEEEECH
Q ss_conf 887799977887899999999977998189994498999999----97789------84227988---178743897316
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQL----EDTRI------NAKALPGI---KLSPLLNFSSDH 69 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i----~~~~~------n~~~lp~i---~l~~~i~~t~~~ 69 (329)
++++|+|||+|.||+.+|..++..| ++|.+|+++++..+.- .+... ....+..- ..-.+++.+++.
T Consensus 2 ~Ik~VaViGaG~MG~gIA~~~a~~G-~~V~l~D~~~~~l~~a~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTG-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCH
T ss_conf 9588999887688999999999589-988999899899999999999718999999866899999999998366435888
Q ss_pred HHHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEC--CCCCHHH---
Q ss_conf 8775555441122177--76665555332035685055237520002585431012332100121001--2888178---
Q gi|254781039|r 70 TLLQNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVL--SGPGFAR--- 142 (329)
Q Consensus 70 ~~l~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vl--sGPs~A~--- 142 (329)
+++.+||+||-|+|-. .=+++++++.++.++++++.|-|-+|. ++++.+..-...++..+ ..|....
T Consensus 81 ~~~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~------is~ia~~~~~p~R~ig~HffnP~~~~~LV 154 (291)
T PRK06035 81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIM------IAEIATALERKDRFIGMHWFNPAPVMKLI 154 (291)
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC------HHHHHHHCCCCHHEEEECCCCCCCCCCEE
T ss_conf 897659999988838899999999999965899837986088778------69999765994223641126870116336
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEE
Q ss_conf 9987653212467731789999997534111389973886144
Q gi|254781039|r 143 DIAQGLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDRIGV 185 (329)
Q Consensus 143 Eia~~~pt~~~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~~Gv 185 (329)
||..+. .++.++.+.+.++..+=-..+....|.-|-
T Consensus 155 EIv~g~-------~Ts~~~~~~~~~~~~~lgk~pV~v~d~pGF 190 (291)
T PRK06035 155 EVVRAA-------LTSEETFNTTVELSKKIGKIPIEVADVPGF 190 (291)
T ss_pred EECCCC-------CCCHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 653899-------998999999999999759848996587742
No 44
>KOG0409 consensus
Probab=99.01 E-value=2.7e-08 Score=73.63 Aligned_cols=270 Identities=14% Similarity=0.123 Sum_probs=161.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
+++|+.||-|+||++++..|-++| |.|++|.|+.+..+.+.+.+... +.+-.|..+++|++|..+|
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G-~kVtV~dr~~~k~~~f~~~Ga~v-------------~~sPaeVae~sDvvitmv~ 100 (327)
T KOG0409 35 KTRIGFIGLGNMGSAMVSNLIKAG-YKVTVYDRTKDKCKEFQEAGARV-------------ANSPAEVAEDSDVVITMVP 100 (327)
T ss_pred CCEEEEEEECCCHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCHHH-------------HCCHHHHHHHCCEEEEECC
T ss_conf 551357743411189999999759-87999958678878999705014-------------0797999863688999768
Q ss_pred HH-HHHHHHHHHHHHCC---CCCCEEECCCCCCCCCCC--CCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 77-76665555332035---685055237520002585--4310123321001210012888178998765321246773
Q gi|254781039|r 84 SK-GYGEALNFYSNWLK---ESAEIIICSKGFEYNSGM--LLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSK 157 (329)
Q Consensus 84 s~-~~~~~l~~i~~~l~---~~~~ii~~sKGi~~~t~~--~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~ 157 (329)
.. ..++++-.-...+. +..... ++-+|-. +..|+- +.......-.+-.|-.-..-....=+-+.+|+-
T Consensus 101 ~~~~v~~v~~g~~Gvl~g~~~g~~~~-----vDmSTidp~~s~ei~-~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagG 174 (327)
T KOG0409 101 NPKDVKDVLLGKSGVLSGIRPGKKAT-----VDMSTIDPDTSLEIA-KAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGG 174 (327)
T ss_pred CHHHHHHHHCCCCCCEEECCCCCCEE-----EECCCCCHHHHHHHH-HHHHHCCCEEEECCCCCCCHHHHCCEEEEEECC
T ss_conf 80766888407786235215888347-----762446878899999-999747986985666677013333728999468
Q ss_pred HHHHHHHHHHHHCCCC-EEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 1789999997534111-389973886144440002567788997521100380578999999899999999872254455
Q gi|254781039|r 158 NIDISRRLSKILTTDS-FRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADT 236 (329)
Q Consensus 158 d~~~~~~i~~~~~~~~-~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t 236 (329)
|+.+.+....+|+.-- -.+| +| ++|--...++..|...+..--|++|-.-|+..+|-++.+
T Consensus 175 de~~~~~~~~~~~~mGk~~~~----------~G--------~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~ 236 (327)
T KOG0409 175 DEALFEAASPVFKLMGKNVVF----------LG--------GVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKK 236 (327)
T ss_pred CHHHHHHHHHHHHHHCCEEEE----------EC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 699999889999973251898----------34--------657517889999999999999999999999980898999
Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCHHCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-------H
Q ss_conf 320023210157764477530067877508907025729600319999999999998289871599999998-------0
Q gi|254781039|r 237 ILRLSGVGDLILTATSEQSRNFCFGIALGRGEKQNPDQIQLVEGAIAVSCVINISKKMGLKLPIFQAISDVM-------M 309 (329)
Q Consensus 237 ~~glaG~GDl~~T~~s~~SRN~~~G~~lg~g~~~~~~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~il-------~ 309 (329)
+++-=-. -.|.|..=+| +|..+.++.- .+... +--=+.-+....+.++..+..+|+....+|+. +
T Consensus 237 l~eiln~----G~~~S~~~~~--~~p~m~k~dy-~p~f~-~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~ 308 (327)
T KOG0409 237 LLEILNT----GRCWSSMFYN--PVPGMLKGDY-NPGFA-LKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGY 308 (327)
T ss_pred HHHHHHC----CCCCCHHHHC--CCCHHHCCCC-CCCCH-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999735----7756677757--5860103778-98614-8999988899997664048988467899999999985688
Q ss_pred CCCCHHHHHH
Q ss_conf 7899899999
Q gi|254781039|r 310 NHISVDEALS 319 (329)
Q Consensus 310 ~~~~~~~~i~ 319 (329)
++++-..+++
T Consensus 309 g~~Dfs~V~~ 318 (327)
T KOG0409 309 GDKDFSAVYR 318 (327)
T ss_pred CCCCCHHHHH
T ss_conf 7666078999
No 45
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.01 E-value=4.2e-09 Score=78.91 Aligned_cols=261 Identities=15% Similarity=0.084 Sum_probs=142.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHH---HHHHHCC
Q ss_conf 7799977887899999999977998189994498999999977898422798817874389731687755---5544112
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQN---ADIVLFA 81 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~---adiIiia 81 (329)
+||++||-|.||..+|..|+++| ++|..|.|+++..+.+.+.+..+ +.+..+.+.. +++|+++
T Consensus 1 MkIGfIGLG~MG~~mA~nL~~~G-~~V~v~d~~~~~~~~~~~~g~~~-------------~~s~~e~~~~l~~~~vI~~~ 66 (298)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG-HEVVGYDVNQEAVDVAGKLGITA-------------RHSLEELVSKLEAPRAIWVM 66 (298)
T ss_pred CEEEEECHHHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHCCCEE-------------CCCHHHHHHHCCCCCEEEEE
T ss_conf 97999834676899999999779-94899849989999999869954-------------28999999737899889997
Q ss_pred CCH-HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHH-HHHHHHHHHHCCCCCCHH
Q ss_conf 217-776665555332035685055237520002585431012332100121001288817-899876532124677317
Q gi|254781039|r 82 TSS-KGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFA-RDIAQGLPVGVILSSKNI 159 (329)
Q Consensus 82 vps-~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A-~Eia~~~pt~~~ia~~d~ 159 (329)
+|+ ..+++++..+.++++++..+|.++--....+ .-..+.+....+.++--|.-= .+=|+.-|+ +- ++-+.
T Consensus 67 vp~g~~v~~vi~~l~~~L~~g~iiID~sts~~~~t-----~~~~~~l~~~gi~flDapVSGG~~GA~~Gls-iM-vGG~~ 139 (298)
T PRK12490 67 VPAGEVTESVLKDLYPLLSPGDIVIDGGNSRYKDD-----LRRAEELAERGIHYVDCGTSGGVWGLRNGYC-LM-VGGDK 139 (298)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHH-----HHHHHHHHHCCCCEECCCCCCCHHHHHCCCE-EE-CCCCH
T ss_conf 68945599999968852699988852887899999-----9999999975990305535788789966986-85-18999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC--HHHH
Q ss_conf 89999997534111389973886144440002567788997521100380578999999899999999872254--4553
Q gi|254781039|r 160 DISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGR--ADTI 237 (329)
Q Consensus 160 ~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~--~~t~ 237 (329)
+..+++..+|+.=--+ .++-.+|. .++| .-.++=+|....-.-+++.|...|.+..+.+ .+.+
T Consensus 140 ~~~~~~~pil~~ia~~-------~~~~~~G~------~GsG--h~vKmvnN~Iey~~mq~iaEa~~l~~~~~~~~d~~~v 204 (298)
T PRK12490 140 EIYDRLEPVFDALAPE-------NGYVHAGP------VGSG--HFLKMVHNGIEYGMMQAYAEGFELLDKSDFDFDVEDV 204 (298)
T ss_pred HHHHHHHHHHHHHCCC-------CCCCCCCC------CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 9999999999996674-------58572089------8753--8899999999999999999999999867998889999
Q ss_pred HHCCCCCEEEEEEECCCCCHHHH-HHHHHCCCCCC---HHCCCEECHHHHHHHHHHHHHHCCCCCC-HHHHHHH-HHHCC
Q ss_conf 20023210157764477530067-87750890702---5729600319999999999998289871-5999999-98078
Q gi|254781039|r 238 LRLSGVGDLILTATSEQSRNFCF-GIALGRGEKQN---PDQIQLVEGAIAVSCVINISKKMGLKLP-IFQAISD-VMMNH 311 (329)
Q Consensus 238 ~glaG~GDl~~T~~s~~SRN~~~-G~~lg~g~~~~---~~~~~~vEG~~~~~~i~~l~~~~~~~~P-i~~~v~~-il~~~ 311 (329)
+..-.-|.. -.|.=... ...|.+..... ....+.=+|.-++.... ++++.+| |..+++. .+..+
T Consensus 205 ~~~w~~G~~------~~S~L~ei~~~~l~~~~~l~~i~~~~~~~Gtg~wt~~~A~----~lgvp~P~i~~Al~~R~~S~~ 274 (298)
T PRK12490 205 ARVWANGSV------IRSWLLDLTVKALAEDPKLSGIKGYMNDSGEGRWTVEEAI----ELAVAAPVIAASLFMRFASQE 274 (298)
T ss_pred HHHHHCCCH------HHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHH----HCCCCCHHHHHHHHHHHHHCC
T ss_conf 999957762------6669999999985459974332663368895199999999----839991699999999998657
No 46
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.00 E-value=2.9e-09 Score=79.96 Aligned_cols=198 Identities=14% Similarity=0.166 Sum_probs=115.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH--------CCCCCCCCCCC---CCCCCEEEEECH-H
Q ss_conf 88779997788789999999997799818999449899999997--------78984227988---178743897316-8
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED--------TRINAKALPGI---KLSPLLNFSSDH-T 70 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~--------~~~n~~~lp~i---~l~~~i~~t~~~-~ 70 (329)
+++||+|||+|.||+.+|..++.+| ++|.+|+++++..+.-.+ .....+..+.- ....++.++++. +
T Consensus 2 ~i~~VaViGaG~MG~gIA~~~a~~G-~~V~l~D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~ 80 (288)
T PRK08293 2 TIKKVTVAGAGVLGSQIAFQTAFKG-FDVTIYDISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAKNRITFTTDLAQ 80 (288)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHH
T ss_conf 9578999897889999999999579-928999898899999999999999999970599917899999807730589899
Q ss_pred HHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEC--CCCCHHHHHHH
Q ss_conf 775555441122177--76665555332035685055237520002585431012332100121001--28881789987
Q gi|254781039|r 71 LLQNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVL--SGPGFARDIAQ 146 (329)
Q Consensus 71 ~l~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vl--sGPs~A~Eia~ 146 (329)
++++||+||-|+|-. .-+++++++.++.++++++.|-|-+|. ++++.+..-...++..+ -.|-...-+
T Consensus 81 a~~~aDlViEav~E~l~iK~~lf~~le~~~~~~~IlaSNTSsl~------it~la~~~~~p~R~ig~HffnP~~~m~L-- 152 (288)
T PRK08293 81 AVKDADLVIEAVPEDPEIKGDFYEQLAEVAPEKTIFATNSSTLL------PSQFADATGRPEKFLALHFANHIWKNNT-- 152 (288)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC------HHHHHHHCCCCHHEEEECCCCCCCCCCE--
T ss_conf 84669999997808799999999999974677669986687676------5799886199223343033588342752--
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHCCCC-EEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 653212467-731789999997534111-389973886144440002567788997521100380578999999899999
Q gi|254781039|r 147 GLPVGVILS-SKNIDISRRLSKILTTDS-FRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIM 224 (329)
Q Consensus 147 ~~pt~~~ia-~~d~~~~~~i~~~~~~~~-~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~ 224 (329)
..++-+ .++.++.+.+.++...=- ..+....|.-|-=. |- +...-++|..
T Consensus 153 ---VEiv~g~~Ts~e~~~~~~~~~~~lgk~pvvv~~d~pGFi~----------------------NR---l~~~~~~Ea~ 204 (288)
T PRK08293 153 ---AEIMGHPGTDPEVYETVVAFAKAIGMVPIVLKKEQPGYIL----------------------NS---LLVPFLDAAL 204 (288)
T ss_pred ---EEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEH----------------------HH---HHHHHHHHHH
T ss_conf ---6443899999999999999999839989998577698409----------------------99---9999999999
Q ss_pred HHHHHHCCCHHHH
Q ss_conf 9998722544553
Q gi|254781039|r 225 KLTEAMNGRADTI 237 (329)
Q Consensus 225 ~l~~~~g~~~~t~ 237 (329)
++.+.-.++++.+
T Consensus 205 ~lv~eGva~~e~I 217 (288)
T PRK08293 205 ALWAKGVADPETI 217 (288)
T ss_pred HHHHHCCCCHHHH
T ss_conf 9999189999999
No 47
>PRK07660 consensus
Probab=98.99 E-value=2.1e-09 Score=80.85 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=79.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH----HHC---CCCCCCCCCC---CCCCCEEEEECHHHH
Q ss_conf 887799977887899999999977998189994498999999----977---8984227988---178743897316877
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQL----EDT---RINAKALPGI---KLSPLLNFSSDHTLL 72 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i----~~~---~~n~~~lp~i---~l~~~i~~t~~~~~l 72 (329)
+++||+|||+|.||+.+|..++..| ++|.+|+++++..+.- .+. ......+..- ..-.++..+++.+++
T Consensus 2 ~Ik~VaViGaG~MG~gIA~~~a~~G-~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (283)
T PRK07660 2 GVQKIVVIGAGQMGSGIAQVCAMAG-YDVKVQDLKQEQLDRGLAIITKNLARQVEKGRMKEEEKEATLNRLTVTLDLDCV 80 (283)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 9788999896989999999999669-818999798899999999999999999870589989999998358776898997
Q ss_pred HHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 5555441122177--7666555533203568505523752000
Q gi|254781039|r 73 QNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEY 113 (329)
Q Consensus 73 ~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~ 113 (329)
.+||+||-|+|-. .=+++++++.++.++++++.|-|-+|..
T Consensus 81 ~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~i 123 (283)
T PRK07660 81 KEADLIIEAAVEKMDIKKKIFANLDEIAPEHAILATNTSSLPI 123 (283)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 6899999878575444299999999647997189865888873
No 48
>PRK09117 consensus
Probab=98.97 E-value=3.3e-09 Score=79.54 Aligned_cols=109 Identities=21% Similarity=0.240 Sum_probs=79.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC-C------CCCCCCCCC---CCCCCEEEEECHHHH
Q ss_conf 887799977887899999999977998189994498999999977-8------984227988---178743897316877
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT-R------INAKALPGI---KLSPLLNFSSDHTLL 72 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~-~------~n~~~lp~i---~l~~~i~~t~~~~~l 72 (329)
.++||+|||+|.||..+|..++..| ++|.+|+++++..+.-.+. . .....+... ..-.++..+++.+++
T Consensus 1 sI~~VaViGaG~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~ 79 (282)
T PRK09117 1 SIQTVGIIGAGTMGNGIAQACAVAG-LDVVMVDISDAAVQRGLATVAGSLDRLIKKEKLTEADKAAALARIKGSTDYDAL 79 (282)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 9177999897799999999999679-968999898899999999999999999970688778899998406567998997
Q ss_pred HHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 5555441122177--766655553320356850552375200
Q gi|254781039|r 73 QNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 73 ~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
++||+||-|+|-. -=+++++++.++.++++++.|-|-+|.
T Consensus 80 ~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~ 121 (282)
T PRK09117 80 KDADLVIEAATENLDLKLKILKQLDALVGPDAIIATNTSSIS 121 (282)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 559999987858888889999999865799818986587676
No 49
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.97 E-value=2.8e-09 Score=80.02 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=80.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC----CCCCCCCCCCCC--CCCEEEEEC-HHHHHHHH
Q ss_conf 87799977887899999999977998189994498999999977----898422798817--874389731-68775555
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT----RINAKALPGIKL--SPLLNFSSD-HTLLQNAD 76 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~----~~n~~~lp~i~l--~~~i~~t~~-~~~l~~ad 76 (329)
++||+|||+|-||+.+|..++.+| ++|.+|+++++..+.+.+. ...-..+....+ ..++.++++ .+++.+||
T Consensus 2 IkkVAVIGAGvMGsGwAa~FA~aG-~~V~L~Dp~peA~~ki~~~l~~a~~al~~L~~~~l~~~grL~~~~sL~eAV~dAD 80 (489)
T PRK07531 2 IMKAACIGGGVIGGGWAARFLLNG-WDVAVFDPHPEAERIIGEVLANARRALPGLTDAPLPPEGRLSFCASLAEAVAGAD 80 (489)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCCC
T ss_conf 767999871886899999999579-9699994887899999999999999877532035564677686388999974799
Q ss_pred HHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 441122177--7666555533203568505523752000
Q gi|254781039|r 77 IVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEY 113 (329)
Q Consensus 77 iIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~ 113 (329)
+|+-++|-. .=++++++|..+.+++++|-|-|-||-+
T Consensus 81 lVqEaVPE~LdIKq~vf~eLd~~~~~~aIiASsTSgl~~ 119 (489)
T PRK07531 81 WIQESVPERLDLKHKVLAEIEAAARPDALIGSSTSGFKP 119 (489)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf 999878566999999999999767998389853665889
No 50
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.96 E-value=2.2e-09 Score=80.76 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=98.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC--------CCCCCCCCC--CCCCCEEEEECH-HHH
Q ss_conf 877999778878999999999779981899944989999999778--------984227988--178743897316-877
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR--------INAKALPGI--KLSPLLNFSSDH-TLL 72 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~--------~n~~~lp~i--~l~~~i~~t~~~-~~l 72 (329)
++||+|||+|.||+.+|..++..| ++|.+|+++++..+.-.+.- ...+..+.- ..-.+++++++. +++
T Consensus 2 IkkV~ViGaG~MG~~IA~~~a~~G-~~V~l~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a~ 80 (289)
T PRK09260 2 MEKIVVVGAGVMGRGIAYVFASSG-FQTTLVDISQEQLASAQQEIESILEDGVALGKVTEAAAQAALARLSYSLDLKEAV 80 (289)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf 676999796887899999999689-9889997998999999999999999998717999899999995587668889984
Q ss_pred HHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEE--CCCCCHHHHHHHHH
Q ss_conf 5555441122177--7666555533203568505523752000258543101233210012100--12888178998765
Q gi|254781039|r 73 QNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISV--LSGPGFARDIAQGL 148 (329)
Q Consensus 73 ~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~v--lsGPs~A~Eia~~~ 148 (329)
++||+||-|||-. .=+++++++.++.++++++.|-|-+|. ++++.+..-...++.. ...|.+..-
T Consensus 81 ~~aDlViEav~E~l~iK~~v~~~l~~~~~~~~IlaSNTSsl~------is~ia~~~~~p~R~ig~HffnP~~~~~----- 149 (289)
T PRK09260 81 AGADLLIEAVPEKLEIKQAVFETADAHAPAEALIATNTSTLS------PTEIASATKRPERVIGMHFFNPVHKMK----- 149 (289)
T ss_pred CCCCEEEECCCCCHHHCHHHHHHHHHCCCCCCEEEECCCCCC------CHHHHHHCCCHHHEEEECCCCCHHHHE-----
T ss_conf 769999988868632368999998606899808985588877------114554159846626412477432212-----
Q ss_pred HHHCCCC-CCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 3212467-731789999997534111389973886
Q gi|254781039|r 149 PVGVILS-SKNIDISRRLSKILTTDSFRVYCSDDR 182 (329)
Q Consensus 149 pt~~~ia-~~d~~~~~~i~~~~~~~~~~~~~s~D~ 182 (329)
...++-+ .++.++...+..+...-...+....|.
T Consensus 150 lVEvv~g~~Ts~e~i~~~~~~~~~lgk~pv~v~d~ 184 (289)
T PRK09260 150 LVELVRGLETSDETVAVCREVAEQLGKETVVVNEF 184 (289)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 35645899999999999999999749842785688
No 51
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.87 E-value=2e-08 Score=74.44 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=103.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC-------CCCCCCCCC---CCCCCEEEEECH-HH
Q ss_conf 8877999778878999999999779981899944989999999778-------984227988---178743897316-87
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR-------INAKALPGI---KLSPLLNFSSDH-TL 71 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~-------~n~~~lp~i---~l~~~i~~t~~~-~~ 71 (329)
.|+||+|||+|.||..+|..++.+| ++|++|+++++..+.....= .....+.+- ....+++++++. ++
T Consensus 1 Pi~~VaViGaG~mG~giA~~~a~~G-~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~a 79 (308)
T PRK06129 1 PMGSIAIVGAGLIGRAWAIVFARAG-HRVRLWDADPAALAAAPAYIAGRLEDLAAFDLLDGESPDAVLARIRATDSLADA 79 (308)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEECCCHHHH
T ss_conf 9987999777899999999998589-938999898899999999999999999976999876599998350722888998
Q ss_pred HHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEC--CCCCHHHHHHHH
Q ss_conf 75555441122177--76665555332035685055237520002585431012332100121001--288817899876
Q gi|254781039|r 72 LQNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVL--SGPGFARDIAQG 147 (329)
Q Consensus 72 l~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vl--sGPs~A~Eia~~ 147 (329)
+.++|+|+-|+|-. .-+++++++..+.++++++.|-|-||. ++++.+..-...++.++ ..|-+..-+
T Consensus 80 l~~adlViEav~E~l~iK~~lf~~le~~~~~~~IlaSnTSsl~------is~la~~~~~p~R~ig~HffNPp~l~pL--- 150 (308)
T PRK06129 80 VADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALL------ASAFTEHLAGRERCLVAHPINPPYLIPV--- 150 (308)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC------HHHHHHHCCCCCCEEEECCCCCHHCCCC---
T ss_conf 4749999999807799999999999965698558984555388------9999974598541788777786000631---
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHHCCCCEE-EEECCCCCE
Q ss_conf 53212467-73178999999753411138-997388614
Q gi|254781039|r 148 LPVGVILS-SKNIDISRRLSKILTTDSFR-VYCSDDRIG 184 (329)
Q Consensus 148 ~pt~~~ia-~~d~~~~~~i~~~~~~~~~~-~~~s~D~~G 184 (329)
..++-+ -++.++.+...+++..--.. +....|+-|
T Consensus 151 --VEIV~g~~Ts~~~v~~~~~~~~~lGk~PV~v~ke~pG 187 (308)
T PRK06129 151 --VEVVPAPWTAPATVARAHALYRAAGQSPVRLRREIDG 187 (308)
T ss_pred --EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf --5671799989899999999999839988999025621
No 52
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.87 E-value=1.7e-08 Score=74.98 Aligned_cols=160 Identities=15% Similarity=0.178 Sum_probs=101.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC
Q ss_conf 779997788789999999997799818999449--899999997789842279881787438973168775555441122
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRK--EILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT 82 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~--~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav 82 (329)
++|+|+|.|-+|..||..|.+.| ..+.+|+.| ++..+.-.+.+.- +. ..++..+.++++|+||+|+
T Consensus 1 k~V~IiGlGLIGgSlalalk~~g-~~~~i~~~d~~~~~l~~A~~~g~i----------d~-~~~~~~~~~~~~DlVvlat 68 (357)
T PRK06545 1 KTVLIVGLGLIGGSLALAIKAAG-PDVFIIGYDPSGAQLARALGFGVI----------DE-LAEDLARAAAEADLIVLAV 68 (357)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHCCCC----------CE-ECCCHHHHCCCCCEEEECC
T ss_conf 97999977878999999998549-976999966999999999868997----------73-0488767156799999949
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEEC--CCCCCCCCCC-CCCHHHHHHHHHCCCEE--CCCCCHHH-HHHHHHHHHCCCC-
Q ss_conf 1777666555533203568505523--7520002585-43101233210012100--12888178-9987653212467-
Q gi|254781039|r 83 SSKGYGEALNFYSNWLKESAEIIIC--SKGFEYNSGM-LLSSYSEKVLPSHSISV--LSGPGFAR-DIAQGLPVGVILS- 155 (329)
Q Consensus 83 ps~~~~~~l~~i~~~l~~~~~ii~~--sKGi~~~t~~-~~se~i~~~~~~~~~~v--lsGPs~A~-Eia~~~pt~~~ia- 155 (329)
|...+.++++++.. +++++.|..+ +|+-...... +..+ -.++++.+|++- -|||..|. ++.++.+..++-.
T Consensus 69 Pv~~~~~~l~~l~~-l~~~~ivTDVgSvK~~I~~~~~~~~~~-~~~FVggHPMAGsEksG~~aA~~~LF~~a~~iltP~~ 146 (357)
T PRK06545 69 PVDATAALLAELAD-LAPGVIVTDVGSVKGAILAEAEALGLK-DVRFVGGHPMAGSHKSGVLAAKAHLFENAPWVLTPDD 146 (357)
T ss_pred CHHHHHHHHHHHHH-CCCCCEEEECCCCHHHHHHHHHHHCCC-CCCEECCCCCCCCCCCCHHHCCHHHHCCCEEEEECCC
T ss_conf 99999999999872-389978997510079999999983688-8864567982647774712264568669819996389
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 73178999999753411138997
Q gi|254781039|r 156 SKNIDISRRLSKILTTDSFRVYC 178 (329)
Q Consensus 156 ~~d~~~~~~i~~~~~~~~~~~~~ 178 (329)
..+.+..+.+.++...=--++..
T Consensus 147 ~t~~~~~~~v~~l~~~lGa~~~~ 169 (357)
T PRK06545 147 HVDPEAVAELKDLLSGTGAKFVV 169 (357)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999999999999975998998
No 53
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.87 E-value=9.2e-09 Score=76.65 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=82.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH------------CCCCCCCCCCCCCCCCEEEEECHH
Q ss_conf 88779997788789999999997799818999449899999997------------789842279881787438973168
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED------------TRINAKALPGIKLSPLLNFSSDHT 70 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~------------~~~n~~~lp~i~l~~~i~~t~~~~ 70 (329)
+.+||+|||+|.||+.+|..++..| ++|.+|+++++..+.-.+ .+.+... --....+|+++++.+
T Consensus 2 ~i~~VaViGaGtMG~gIA~~~a~aG-~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~--~~~~~~ri~~~~~l~ 78 (503)
T PRK08268 2 SIATVAVIGAGAMGAGIAQVAAQAG-HTVLLYDARAGAAAAARDGIAATLAKLVEKGKLTAEQ--AEAALARLRPVEALA 78 (503)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHH--HHHHHHCCEEECCHH
T ss_conf 9678999796889999999999389-9089997998999999999999999999769999889--999984747417788
Q ss_pred HHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 775555441122177--7666555533203568505523752000
Q gi|254781039|r 71 LLQNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEY 113 (329)
Q Consensus 71 ~l~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~ 113 (329)
.+.++|+||-|||-. .-++++.++..+.++++++.|-|-+|..
T Consensus 79 ~l~~aDlVIEAV~E~l~~K~~vf~~l~~~~~~~~IlASNTSsL~i 123 (503)
T PRK08268 79 DLADCDLVVEAIVERLDVKQALFAQLEAIVSDDCILATNTSSLSI 123 (503)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf 975799999936067899999999998547988579841776779
No 54
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.86 E-value=1.8e-08 Score=74.85 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=94.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHCC
Q ss_conf 887799977887899999999977998189994498999999977898422798817874389731-6877555544112
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLFA 81 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIiia 81 (329)
.+++|+|+|.|.||..+|..|.++| +.|.+|+++......-..... |+. +.. ..+. .+.+.++|+||+|
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~l------gv~--d~~-~~~~~~~~~~~aDlViva 71 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALEL------GVI--DEL-TVAGLAEAAAEADLVIVA 71 (279)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHC------CCC--HHH-CCCHHHHHCCCCCEEEEE
T ss_conf 8648999877467799999999769-847997247746778776635------853--010-011555413569989995
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEE----CCCCC-HHHHHHHHHHHHCCCCC
Q ss_conf 21777666555533203568505523752000258543101233210012100----12888-17899876532124677
Q gi|254781039|r 82 TSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISV----LSGPG-FARDIAQGLPVGVILSS 156 (329)
Q Consensus 82 vps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~v----lsGPs-~A~Eia~~~pt~~~ia~ 156 (329)
||...+.++++++.+++++++++..++ ++..-+-+.+++..|...-.+ +.||. ++ +..++...-++-..
T Consensus 72 vPi~~~~~~l~~l~~~l~~g~iv~Dv~-----S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~-~lf~~~~~vltp~~ 145 (279)
T COG0287 72 VPIEATEEVLKELAPHLKKGAIVTDVG-----SVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADA-GLFENAVVVLTPSE 145 (279)
T ss_pred CCHHHHHHHHHHHCCCCCCCCEEECCC-----CHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC-CCCCCCEEEEECCC
T ss_conf 778899999998630379998897364-----201789999997466777078218999874311-23379679994799
Q ss_pred -CHHHHHHHHHHHHCCCCEEEEE
Q ss_conf -3178999999753411138997
Q gi|254781039|r 157 -KNIDISRRLSKILTTDSFRVYC 178 (329)
Q Consensus 157 -~d~~~~~~i~~~~~~~~~~~~~ 178 (329)
.+.+...++.+++..-.-+++.
T Consensus 146 ~~~~~~~~~~~~~~~~~ga~~v~ 168 (279)
T COG0287 146 GTEKEWVEEVKRLWEALGARLVE 168 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 98789999999999974988998
No 55
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=98.86 E-value=1.1e-08 Score=76.09 Aligned_cols=106 Identities=20% Similarity=0.252 Sum_probs=78.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC----C---CCCCCCCCC---CCCCCEEEEECHHHHHHH
Q ss_conf 799977887899999999977998189994498999999977----8---984227988---178743897316877555
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT----R---INAKALPGI---KLSPLLNFSSDHTLLQNA 75 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~----~---~n~~~lp~i---~l~~~i~~t~~~~~l~~a 75 (329)
||+|||+|.||+.+|..++..| ++|.+|+++++..+...+. - .....++.- ..-.+++.+++.+.+.++
T Consensus 1 kV~ViGaG~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a 79 (180)
T pfam02737 1 KVAVIGAGTMGAGIAQVFARAG-LEVVLVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISFTTDLADAVDA 79 (180)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf 9899997889999999999679-939999799899999999999989999972567567699998524105889997589
Q ss_pred HHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 5441122177--766655553320356850552375200
Q gi|254781039|r 76 DIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 76 diIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
|+|+-|+|-. .=+++++++.++.++++++.+.|-++.
T Consensus 80 dlViEav~E~l~iK~~l~~~l~~~~~~~~IlaSnTS~l~ 118 (180)
T pfam02737 80 DLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLS 118 (180)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCHHHEEEEECCCCCC
T ss_conf 999992517688999999999974303308875267689
No 56
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.83 E-value=3.3e-08 Score=73.08 Aligned_cols=155 Identities=18% Similarity=0.147 Sum_probs=102.6
Q ss_pred CCC-CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE-ECHH---HHHHH
Q ss_conf 988-877999778878999999999779981899944989999999778984227988178743897-3168---77555
Q gi|254781039|r 1 MKN-YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS-SDHT---LLQNA 75 (329)
Q Consensus 1 M~~-~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t-~~~~---~l~~a 75 (329)
|+. .+.|+|||.|.||..||..|+++| ++|.+|.|+.+.++.+.+..... +..+... +..+ .++..
T Consensus 1 m~~~~~~IGiIGLGvMG~nmA~Nl~~~G-~~V~vynrt~~k~~~~~~~~~~~--------~~~i~~~~sl~e~v~sl~~p 71 (474)
T PTZ00142 1 MDEGESDIGLIGLAVMGQNLSLNMYSRG-FKVSVYNRTTEKVEEFMKKAKEG--------NKFVKGYHSLEELVNSLKRP 71 (474)
T ss_pred CCCCCCCEEEEEEHHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHCCCC--------CCCCCCCCCHHHHHHHCCCC
T ss_conf 9977674668736386799999999789-87999779879999999853224--------67764667899999737999
Q ss_pred HHHHCCCCH-HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHH-HHHHHHHHHHCC
Q ss_conf 544112217-776665555332035685055237520002585431012332100121001288817-899876532124
Q gi|254781039|r 76 DIVLFATSS-KGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFA-RDIAQGLPVGVI 153 (329)
Q Consensus 76 diIiiavps-~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A-~Eia~~~pt~~~ 153 (329)
..|++.||+ ..++++++.+.++++++.+||....-.-.+|. -..+.+....+..+.-|.-- .+=|+.-| ++.
T Consensus 72 r~Iilmv~aG~~Vd~vi~~L~~~L~~GDIIID~GNs~~~dt~-----rr~~~l~~kgI~fld~GVSGGe~GAr~Gp-siM 145 (474)
T PTZ00142 72 RRVMLLIKAGEAVDEFIDNILPHLEKGDIIIDGGNEWYNNSE-----RRIKLCKEKGILYIGMGVSGGEEGARYGP-SLM 145 (474)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH-----HHHHHHHHCCCCEECCCCCCCHHHHHCCC-EEC
T ss_conf 989998269825999999998508899989879988865799-----99999985799186478884357773398-213
Q ss_pred CCCCHHHHHHHHHHHHCC
Q ss_conf 677317899999975341
Q gi|254781039|r 154 LSSKNIDISRRLSKILTT 171 (329)
Q Consensus 154 ia~~d~~~~~~i~~~~~~ 171 (329)
+++ |.+..+++..+|..
T Consensus 146 vGG-~~~a~~~v~Pilea 162 (474)
T PTZ00142 146 PGG-NPYAYDHVKDIFQA 162 (474)
T ss_pred CCC-CHHHHHHHHHHHHH
T ss_conf 588-68899987689999
No 57
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.78 E-value=3e-08 Score=73.35 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=77.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH----C----CCCCCCCCCCC---CCCCEEEEECHHHH
Q ss_conf 8779997788789999999997799818999449899999997----7----89842279881---78743897316877
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED----T----RINAKALPGIK---LSPLLNFSSDHTLL 72 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~----~----~~n~~~lp~i~---l~~~i~~t~~~~~l 72 (329)
++||+|||+|.||+.+|..++..| ++|.+|+++++..+.-.+ . -...+ +..-. .-.+++++++.+.+
T Consensus 2 I~kV~ViGaG~mG~~IA~~~a~~G-~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~dl~~~ 79 (284)
T PRK07819 2 IQRVGVVGAGQMGSGIAEVCARAG-VDVLVFETTEEAATAGRNRIEKSLERAVSAGK-LTERERDAALARLTFTTDLEDL 79 (284)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCCCCCHHHH
T ss_conf 167999897789999999999579-90899979889999999999999999987278-9879999999637066899997
Q ss_pred HHHHHHHCCCCHH--HHHHHHHHHHHHCC-CCCCEEECCCCCCC
Q ss_conf 5555441122177--76665555332035-68505523752000
Q gi|254781039|r 73 QNADIVLFATSSK--GYGEALNFYSNWLK-ESAEIIICSKGFEY 113 (329)
Q Consensus 73 ~~adiIiiavps~--~~~~~l~~i~~~l~-~~~~ii~~sKGi~~ 113 (329)
.+||+|+-|||-. .=+++++++..+.. +++++.|-|-+|..
T Consensus 80 ~~adlViEav~E~l~~K~~l~~~ld~~~~~p~~IlaSNTS~l~i 123 (284)
T PRK07819 80 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI 123 (284)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 65999999073878888999999997428998599965888761
No 58
>pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain.
Probab=98.46 E-value=6.5e-07 Score=64.64 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=68.6
Q ss_pred EEECCCHHHHHHHHHHHHCCCCEE-EEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCHHH
Q ss_conf 997788789999999997799818-9994498999999977898422798817874389731687755554411221777
Q gi|254781039|r 8 FVIGAGAFGTALSSVIASRGLANV-TLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSSKG 86 (329)
Q Consensus 8 ~ViGaGa~GtAlA~~La~~g~~~V-~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps~~ 86 (329)
+|||+|..|++|+..|...| |+| -++.|.+.-.+..... +|. .+.+..|.+.++|+||++||-..
T Consensus 1 GiIGaGrvG~~L~~al~~aG-h~v~gv~srs~~s~~~a~~~------~~~-------~~~~~~ev~~~adlv~itvPDd~ 66 (111)
T pfam10727 1 GIISAGRVGVALGEALERAG-HVVHAISAISDASRERAERR------LDS-------PVLPIPDVIRRAELVVLAVPDAE 66 (111)
T ss_pred CCCCCCHHHHHHHHHHHHCC-CEEEEEEECCHHHHHHHHHH------CCC-------CCCCHHHHHHHCCEEEEECCHHH
T ss_conf 94376577999999999789-82899983898899999986------699-------76795898976799999897888
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 666555533203568505523752
Q gi|254781039|r 87 YGEALNFYSNWLKESAEIIICSKG 110 (329)
Q Consensus 87 ~~~~l~~i~~~l~~~~~ii~~sKG 110 (329)
+.++++++..+..+++.++.|+=-
T Consensus 67 I~~vv~~la~~~~~GqiV~HtSGa 90 (111)
T pfam10727 67 LPGLVEGLAATVRRGQIVAHTSGA 90 (111)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 999999998326799799986687
No 59
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.46 E-value=3.9e-07 Score=66.10 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=79.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH--------H----HCCCCCCCCCCCCCCCCEEEEECHH
Q ss_conf 887799977887899999999977998189994498999999--------9----7789842279881787438973168
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQL--------E----DTRINAKALPGIKLSPLLNFSSDHT 70 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i--------~----~~~~n~~~lp~i~l~~~i~~t~~~~ 70 (329)
..++|+|||+|.||+.||..++..| .+|.|++++++.++.- + +.+..+.. --..-.+++.+.+.+
T Consensus 312 ~i~~v~ViGaG~MG~GIA~~~a~aG-~~V~l~D~~~e~l~~g~~~~~~~~~~~v~~g~~~~~~--~~~~l~ri~~~~~~~ 388 (715)
T PRK11730 312 DVKQAAVLGAGIMGGGIAYQSASKG-VPVIMKDINQKALDLGMNEAAKLLNKQVERGRIDGLK--MAGVLSTITPTLDYA 388 (715)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHH--HHHHHHCCCCCCCCH
T ss_conf 7627999787710799999999579-9579997899999999999999999998648998799--999995687415402
Q ss_pred HHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 775555441122177--7666555533203568505523752000
Q gi|254781039|r 71 LLQNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEY 113 (329)
Q Consensus 71 ~l~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~ 113 (329)
.+.++|+||-||+-. .-++++.++.++.++++++.+.|-+|..
T Consensus 389 ~l~~~DlVIEAV~E~l~~K~~vf~~l~~~~~~~aIlAsNTSsl~i 433 (715)
T PRK11730 389 GFKDVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISI 433 (715)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
T ss_conf 433588899854365889999999998655875388515765778
No 60
>TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185 Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase..
Probab=98.46 E-value=6.6e-07 Score=64.61 Aligned_cols=162 Identities=15% Similarity=0.239 Sum_probs=106.7
Q ss_pred CEEEEE-CCCHHHHHHHHHHHHCC------CCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEE--EECHHHHHHH
Q ss_conf 779997-78878999999999779------98189994498999999977898422798817874389--7316877555
Q gi|254781039|r 5 STIFVI-GAGAFGTALSSVIASRG------LANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF--SSDHTLLQNA 75 (329)
Q Consensus 5 ~kI~Vi-GaGa~GtAlA~~La~~g------~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~--t~~~~~l~~a 75 (329)
+||+|| |+|.-|.-||..||.+| .|+|.+=.|+.|.+++--+.-...--..|+. ..+++ .++.++.+.+
T Consensus 1 mkIAvLGGTGdqG~GLALRlA~~glmPeG~~~~iIIGSR~~EkA~EaA~ka~e~l~~~G~d--~~i~~~G~~N~~AA~~a 78 (233)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGLMPEGVDNEIIIGSRDKEKAEEAAAKALEELGDQGVD--RDIKVEGAENEEAAKRA 78 (233)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCC--CCCEEECCCCHHHHHHC
T ss_conf 9678844888402569999987077878777555770488456999999999999708951--36257548877887238
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC---CCC---CC-----CHHHHHHHHH--CCCEE----CCCC
Q ss_conf 544112217776665555332035685055237520002---585---43-----1012332100--12100----1288
Q gi|254781039|r 76 DIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYN---SGM---LL-----SSYSEKVLPS--HSISV----LSGP 138 (329)
Q Consensus 76 diIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~---t~~---~~-----se~i~~~~~~--~~~~v----lsGP 138 (329)
|++|++||-++.-.++++|+.-|+.++.+|+++-+|... ++. .| .+.+.+.+|. -+++. ++ .
T Consensus 79 DVVil~vP~~~~~~~l~~~~~~L~~dK~Vis~~VPl~~~Ig~~~~~y~~P~eGSaA~~~a~~lpeqg~~VvaAFhN~~-A 157 (233)
T TIGR01915 79 DVVILAVPFDHVLKTLESIKDELEADKIVISPVVPLASAIGGKGLRYLPPEEGSAAELVAKLLPEQGSKVVAAFHNIS-A 157 (233)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEHHHHCCCC-H
T ss_conf 978998422224789999999851892899647875000024430026873102899999853326750102121324-4
Q ss_pred CHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 81789-98765321246773178999999753
Q gi|254781039|r 139 GFARD-IAQGLPVGVILSSKNIDISRRLSKIL 169 (329)
Q Consensus 139 s~A~E-ia~~~pt~~~ia~~d~~~~~~i~~~~ 169 (329)
..-.| +-....+=+.++|.|++..+.+++|=
T Consensus 158 ~~L~D~~~~~~D~D~LV~g~de~A~~~V~eLA 189 (233)
T TIGR01915 158 AKLKDVVDEEVDCDVLVCGDDEEAKKVVAELA 189 (233)
T ss_pred HHCCCCCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 54044003743345366268777899999984
No 61
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.42 E-value=1.4e-06 Score=62.56 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=69.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHH--HHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 877999778878999999999779981899944989999--999778984227988178743897316877555544112
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQ--QLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~--~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiia 81 (329)
|.||+|||+|.-|+++|..|...+..++.|++++++.++ .+.-.|.... ...+..+..+.+.+.+++||+|+++
T Consensus 1 M~KV~IIGaG~VG~~~A~~l~~~~~~eivLiDi~~~~a~g~a~Dl~h~~~~----~~~~~~i~~~~dy~~~~daDiVVit 76 (313)
T PTZ00117 1 MKKISIIGSGQIGAIVGLLLLQENLGDVYLYDVIEGVPQGKALDLKHFSTI----IGVNANILGTNNYEDIKDSDVIVIT 76 (313)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHC----CCCCCEEEECCCHHHHCCCCEEEEC
T ss_conf 978999897989999999997089987999958898308899887724203----6898579837999996899999989
Q ss_pred CCH----------------HHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 217----------------7766655553320356850552375200
Q gi|254781039|r 82 TSS----------------KGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 82 vps----------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
.-. .-++++.++++++- ++..++.+|.-.+
T Consensus 77 AG~~rk~g~tR~dLl~~N~~I~~~i~~~i~~~~-p~aiiivvtNPvD 122 (313)
T PTZ00117 77 AGVQRKEGMTREDLIGVNGKIMKSVAESVKKHC-PNAFVICVSNPLD 122 (313)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHH
T ss_conf 899899799889999876777888887762358-9808997899489
No 62
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.41 E-value=1.5e-06 Score=62.29 Aligned_cols=107 Identities=19% Similarity=0.204 Sum_probs=72.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHH--HHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHH
Q ss_conf 988877999778878999999999779981899944989999--999778984227988178743897316877555544
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQ--QLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIV 78 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~--~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiI 78 (329)
|.+-+||+|||+|+-|+++|..+..++..++.|++++++.+. .+.-.|..+.+ ..+..+..+.+.+.+++||+|
T Consensus 4 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~eivLiDi~~~~a~g~a~Dl~h~~~~~----~~~~~v~~~~dy~~~~~aDiV 79 (322)
T PTZ00082 4 MIPRKKISLIGSGNIGGVMAYLIQLKNLADVVLFDIVPNIPAGKALDIMHANVMA----GSNCKVIGTNSYDDIAGSDVV 79 (322)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCC----CCCCEEEECCCHHHHCCCCEE
T ss_conf 0179829998969899999999963899779999788980088999876636446----888579837999997799999
Q ss_pred HCCCC---------------------HHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 11221---------------------77766655553320356850552375200
Q gi|254781039|r 79 LFATS---------------------SKGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 79 iiavp---------------------s~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
+++.- ..-++++.+++.++- ++..++.++.-.+
T Consensus 80 VitAG~~~kpg~t~~~~~R~dLl~~Na~I~~~i~~~i~~~~-p~aiiivvsNPvD 133 (322)
T PTZ00082 80 IVTAGLAKAPGKSDDEWNRDDLLPLNAKIMIEVGENIKKYC-PNAFVIVITNPLD 133 (322)
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEECCCCHH
T ss_conf 98988877899987656788999988999999999987409-9835997489269
No 63
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.40 E-value=1.4e-06 Score=62.40 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=90.4
Q ss_pred CCEEEEE-CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC
Q ss_conf 8779997-788789999999997799818999449899999997789842279881787438973168775555441122
Q gi|254781039|r 4 YSTIFVI-GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT 82 (329)
Q Consensus 4 ~~kI~Vi-GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav 82 (329)
..+|.|| |.|.||.-++..|...| ++|.+.+++.- .+..+.+.+||+|+++|
T Consensus 98 ~~~i~IIGG~G~mG~~F~~~f~~sG-y~V~ild~~dw--------------------------~~~~~~~~~advViVsV 150 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG-YQVRILEKDDW--------------------------DRADDILADAGMVIVSV 150 (374)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCC-CEEEEECCCCC--------------------------CCHHHHHHCCCEEEEEE
T ss_conf 8717998079827799999999679-87996164445--------------------------34898871799899981
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC-CCHHHHHHHHHCCCEE---CCCCCHHHHHHHHHHHHCCCCCCH
Q ss_conf 177766655553320356850552375200025854-3101233210012100---128881789987653212467731
Q gi|254781039|r 83 SSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGML-LSSYSEKVLPSHSISV---LSGPGFARDIAQGLPVGVILSSKN 158 (329)
Q Consensus 83 ps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~-~se~i~~~~~~~~~~v---lsGPs~A~Eia~~~pt~~~ia~~d 158 (329)
|-....++++++ +++.+++.+..+| |.+. |-+...+.. .-++.- +-||..+.= .++ +-++.-+.+
T Consensus 151 PI~~T~~VI~~l-~~l~~~~lL~DiT------SvK~~Pl~aMl~~h-~gpV~GlHPMFGP~v~sl--~~Q-vVV~c~gr~ 219 (374)
T PRK11199 151 PIHLTEEVIEKL-PPLPEDCILVDLT------SVKNGPLQAMLAAH-SGPVLGLHPMFGPDVGSL--AKQ-VVVVCDGRQ 219 (374)
T ss_pred CHHHHHHHHHHC-CCCCCCCEEEECH------HCCHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC--CCC-EEEECCCCC
T ss_conf 458899999857-7899986898610------04278999999856-898502277879996444--787-699889998
Q ss_pred HHHHHHHHHHHCCCCEEEEEC
Q ss_conf 789999997534111389973
Q gi|254781039|r 159 IDISRRLSKILTTDSFRVYCS 179 (329)
Q Consensus 159 ~~~~~~i~~~~~~~~~~~~~s 179 (329)
.+....+.+.|...--+++.+
T Consensus 220 ~e~~~wl~~~~~~~Ga~l~~~ 240 (374)
T PRK11199 220 PEAYQWLLEQIQIWGARLHRI 240 (374)
T ss_pred HHHHHHHHHHHHHHCCEEEEC
T ss_conf 377899999999848789986
No 64
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.40 E-value=8.2e-07 Score=63.98 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=77.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH--------CCCCCCCCCCC---CCCCCEEEEECHHH
Q ss_conf 88779997788789999999997799818999449899999997--------78984227988---17874389731687
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED--------TRINAKALPGI---KLSPLLNFSSDHTL 71 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~--------~~~n~~~lp~i---~l~~~i~~t~~~~~ 71 (329)
.+++|+|||+|.||..+|..++..| .+|.+|+++++.++.-.. .-... .+..- ..-..++.+.+..+
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G-~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g-~l~~~~~~~~l~~i~~~~~~~~ 79 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAG-YDVVLKDISPEALERALAYIEKNLEKLVEKG-KLTEEEADAALARITPTTDLAA 79 (307)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHCCCCCCHHH
T ss_conf 7407999724602099999997349-9569995898999999999999999888627-8774559999751525576656
Q ss_pred HHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 75555441122177--766655553320356850552375200
Q gi|254781039|r 72 LQNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 72 l~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
+++||+|+-|+|-. -=+++++++..+.++++++-|-|-+|.
T Consensus 80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~ 122 (307)
T COG1250 80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122 (307)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 6308878885301599999999998865598857862267787
No 65
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating); InterPro: IPR004849 This family resembles a larger family of bacterial and eukaryotic 6-phosphogluconate dehydrogenases (Gnd) but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain Gnd, and in Aquifex aeolicus. .
Probab=98.36 E-value=2e-06 Score=61.53 Aligned_cols=271 Identities=15% Similarity=0.167 Sum_probs=149.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HCCCCCCCCCCCCCCCCEEEEECHHH---HHHHHHHH
Q ss_conf 877999778878999999999779981899944989999999-77898422798817874389731687---75555441
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLE-DTRINAKALPGIKLSPLLNFSSDHTL---LQNADIVL 79 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~-~~~~n~~~lp~i~l~~~i~~t~~~~~---l~~adiIi 79 (329)
|+.|..||-|.||++|+..|.+.| |+|..|+++++-++.++ +.+. +.+++..|. +...-+|=
T Consensus 1 MktlglIGLGrMG~ni~~rl~~rg-h~~vgYd~~q~av~~~kG~d~~-------------~gv~nl~E~~~~l~~Pr~vW 66 (341)
T TIGR00872 1 MKTLGLIGLGRMGANIAKRLADRG-HEVVGYDRDQAAVEELKGEDRA-------------EGVANLKELLKRLSAPRVVW 66 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHCCCCC-------------CCCHHHHHHHHCCCCCCEEE
T ss_conf 952443133467899999985279-4699853887999997201134-------------30012478884179995899
Q ss_pred CCCCHH-HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHH--HCCCCC
Q ss_conf 122177-76665555332035685055237520002585431012332100121001288817899876532--124677
Q gi|254781039|r 80 FATSSK-GYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPV--GVILSS 156 (329)
Q Consensus 80 iavps~-~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt--~~~ia~ 156 (329)
+=||.. .+.+++++++|.|.+.-.||..=.-...++.+..-++.+.-+.-..+. .||=- .|+.+ |+-|++
T Consensus 67 vMVPhgnivdaVl~~l~p~L~kGD~vIdgGNsyYkds~Rry~~lke~gih~LD~G-tSGG~------~G~~~G~cfMiGG 139 (341)
T TIGR00872 67 VMVPHGNIVDAVLRELAPLLEKGDIVIDGGNSYYKDSLRRYKELKEKGIHYLDVG-TSGGV------LGKERGYCFMIGG 139 (341)
T ss_pred EECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEECC-CCCCC------CCCCCCCEEEECC
T ss_conf 8628736799999976667640888982786512334788876887187565345-45772------3044641477518
Q ss_pred CHHHHHHHHHHHHCC--CCEEEEECCCCCEEEEEEHHHH-HHHHH--HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 317899999975341--1138997388614444000256-77889--97521100380578999999899999999872-
Q gi|254781039|r 157 KNIDISRRLSKILTT--DSFRVYCSDDRIGVQIGGALKN-VIAIA--SGILKGRGCGDSARAIVMVQGLSEIMKLTEAM- 230 (329)
Q Consensus 157 ~d~~~~~~i~~~~~~--~~~~~~~s~D~~GvE~~galKN-v~AIa--~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~- 230 (329)
|.+..++.-.+|.| +-.-.-+-+ -|-.==-|.-| =|+-+ ||-=.=++.=+|-.--=|-.++.|-..+.+.-
T Consensus 140 -D~eaf~~~EplF~tvaPGvaaaPrt--PGrdGd~A~ee~GYly~G~~GsGHF~KMvHNGIEYG~MaaiaEGfe~L~nsd 216 (341)
T TIGR00872 140 -DEEAFKKAEPLFKTVAPGVAAAPRT--PGRDGDVAVEEKGYLYLGEAGSGHFVKMVHNGIEYGMMAAIAEGFEVLKNSD 216 (341)
T ss_pred -CHHHHHHHCHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf -4799976221443206652137888--7887760625676155458787663022224513888999987789875246
Q ss_pred -C-----CCHHHH-----------HHCCCCCEEEEEEECCCC--CHHHHHHH---HHCCCCCCHHCCC---EECHHHHHH
Q ss_conf -2-----544553-----------200232101577644775--30067877---5089070257296---003199999
Q gi|254781039|r 231 -N-----GRADTI-----------LRLSGVGDLILTATSEQS--RNFCFGIA---LGRGEKQNPDQIQ---LVEGAIAVS 285 (329)
Q Consensus 231 -g-----~~~~t~-----------~glaG~GDl~~T~~s~~S--RN~~~G~~---lg~g~~~~~~~~~---~vEG~~~~~ 285 (329)
| ++.||. |.+.=++. ..+.-| |-+-++.. +.+--+.++-++. -=||-=|++
T Consensus 217 vGtrvqhGdaetaPlPnPeCyqfDfD~~eVAr----Vw~~GSVIrSwL~dLt~~Af~~~~dL~~~~G~v~dSGEGrWtv~ 292 (341)
T TIGR00872 217 VGTRVQHGDAETAPLPNPECYQFDFDLEEVAR----VWRRGSVIRSWLLDLTAKAFEESADLEEVEGIVEDSGEGRWTVK 292 (341)
T ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCHHHHHH----HHCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 55500037544678877877777687488999----87089864126888999997507882132236702787278999
Q ss_pred HHHHHHHHCCCCCCHHHHHHH
Q ss_conf 999999982898715999999
Q gi|254781039|r 286 CVINISKKMGLKLPIFQAISD 306 (329)
Q Consensus 286 ~i~~l~~~~~~~~Pi~~~v~~ 306 (329)
...++ +.-.|++..-..
T Consensus 293 ~a~dl----g~p~PVia~sl~ 309 (341)
T TIGR00872 293 EAVDL----GVPIPVIATSLY 309 (341)
T ss_pred HHHHC----CCCHHHHHHHHH
T ss_conf 98862----788248999999
No 66
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=98.30 E-value=9e-07 Score=63.72 Aligned_cols=175 Identities=19% Similarity=0.158 Sum_probs=108.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH-HHH---HHHHC---CCCCCCCCCCC---CCCCEEEEECHH
Q ss_conf 988877999778878999999999779981899944989-999---99977---89842279881---787438973168
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI-LMQ---QLEDT---RINAKALPGIK---LSPLLNFSSDHT 70 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~-~~~---~i~~~---~~n~~~lp~i~---l~~~i~~t~~~~ 70 (329)
|.+..+|+|||+|+||+-||.+.++.| |+|.||+..++ ... .|.+. +.....|.+.+ ..+.+.-.++.+
T Consensus 2 l~~~v~vaVIGaGaMGaGIA~VAA~aG-H~V~LYD~r~eA~a~a~agIe~~L~~lV~kgkL~a~e~e~~l~Rl~PV~~l~ 80 (508)
T TIGR02279 2 LINVVKVAVIGAGAMGAGIAQVAARAG-HQVLLYDIRAEALARAVAGIEKRLKSLVEKGKLTAEEAERTLKRLVPVTDLE 80 (508)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHH
T ss_conf 654106899646852103899998259-8488722888999999999999988875237777888888873178778999
Q ss_pred HHHHHHHHHCCCCH--HHHHHHHHHHHHHCCCCCCEEECCCCCCCC----CCCCCCHHHHHHH--HHC---CCEECCCCC
Q ss_conf 77555544112217--776665555332035685055237520002----5854310123321--001---210012888
Q gi|254781039|r 71 LLQNADIVLFATSS--KGYGEALNFYSNWLKESAEIIICSKGFEYN----SGMLLSSYSEKVL--PSH---SISVLSGPG 139 (329)
Q Consensus 71 ~l~~adiIiiavps--~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~----t~~~~se~i~~~~--~~~---~~~vlsGPs 139 (329)
++.+||++|-|+.- +.=+....++...+.++++|-+-|--|... ....|..+.--|+ |.- =+=|+||=.
T Consensus 81 alAdAgLvIEAivE~L~VK~aLFaqLe~lc~ad~iiasNTSSlSIta~AAglarP~rvaGlHFFNPAP~MaLVEVVSGLa 160 (508)
T TIGR02279 81 ALADAGLVIEAIVENLEVKKALFAQLEELCTADAIIASNTSSLSITALAAGLARPERVAGLHFFNPAPVMALVEVVSGLA 160 (508)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCC
T ss_conf 98602732246774067779999989863670152562325777999997313877075111348655362156623635
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 1789987653212467731789999997534111389973886
Q gi|254781039|r 140 FARDIAQGLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDR 182 (329)
Q Consensus 140 ~A~Eia~~~pt~~~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~ 182 (329)
.+.||+.......--=++.+- +.-||+-|.+..--=|
T Consensus 161 T~~eVae~ly~~a~aWGK~PV------h~~STPGFIVNRVARP 197 (508)
T TIGR02279 161 TEAEVAEQLYETARAWGKQPV------HARSTPGFIVNRVARP 197 (508)
T ss_pred CHHHHHHHHHHHHHHCCCCCC------CCCCCCCCEECCCCCC
T ss_conf 428999999999873288563------2346988234265673
No 67
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.28 E-value=2.9e-06 Score=60.45 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=76.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHH------------HHCCCCCCCCCCCCCCCCEEEEECH
Q ss_conf 8877999778878999999999-77998189994498999999------------9778984227988178743897316
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIA-SRGLANVTLLGRKEILMQQL------------EDTRINAKALPGIKLSPLLNFSSDH 69 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La-~~g~~~V~l~~r~~~~~~~i------------~~~~~n~~~lp~i~l~~~i~~t~~~ 69 (329)
+.+||+|||+|.||+.||...+ +.| .+|++++++++.++.- ++.+....- .-..-.+|+.+++.
T Consensus 308 ~i~kv~ViGaG~MG~gIA~~~a~~aG-~~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~--~~~~l~~i~~~~~~ 384 (706)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAG-LPVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAE--RDKQMALISGTTDY 384 (706)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHH--HHHHHHCEEEECCH
T ss_conf 67679998647323899999999869-8799997999999999998899999998618999899--99986224100441
Q ss_pred HHHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 8775555441122177--766655553320356850552375200
Q gi|254781039|r 70 TLLQNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 70 ~~l~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
+.+.++|+||-||+-. .=++++.++..+.++++++.+.|-.|.
T Consensus 385 ~~~~~~DlVIEAv~E~~~~K~~v~~~le~~~~~~aIlAtNTSsl~ 429 (706)
T PRK11154 385 RGFKHADLVIEAVFEDLALKQQMVADVEQNCAEHTIFASNTSSLP 429 (706)
T ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 231568879997145288899999999964798858950676776
No 68
>KOG2304 consensus
Probab=98.25 E-value=1.7e-06 Score=61.96 Aligned_cols=110 Identities=18% Similarity=0.278 Sum_probs=73.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHH----HHHC--CCCCCCCCCCCC---------CCCEEE
Q ss_conf 9888779997788789999999997799818999449899999----9977--898422798817---------874389
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQ----LEDT--RINAKALPGIKL---------SPLLNF 65 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~----i~~~--~~n~~~lp~i~l---------~~~i~~ 65 (329)
|.++++++|+|+|-||+.+|+..+..| ++|.+++++++.... |.+. |...|.+-+.+. -+.|+.
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg-~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~ 86 (298)
T KOG2304 8 MAEIKNVAIVGAGQMGSGIAQVAATSG-LNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT 86 (298)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 045662478756643203999988519-9469854777899999999999999998621367715678899999999987
Q ss_pred EEC-HHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 731-6877555544112217--776665555332035685055237520
Q gi|254781039|r 66 SSD-HTLLQNADIVLFATSS--KGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 66 t~~-~~~l~~adiIiiavps--~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
+++ .+++.++|+||-|+-- .--+...+++...-++++++.+-+--|
T Consensus 87 ~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl 135 (298)
T KOG2304 87 STNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSL 135 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCE
T ss_conf 1777776423679999998747789999999984466562886256524
No 69
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.20 E-value=7.9e-06 Score=57.59 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=69.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHH--CCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH
Q ss_conf 88779997788789999999997799-818999449899999997--789842279881787438973168775555441
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQQLED--TRINAKALPGIKLSPLLNFSSDHTLLQNADIVL 79 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~~i~~--~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIi 79 (329)
.-.||+|||+|..|+++|..|+.++. .++.|++++++.++.... .|..+ +++ ...+..+.+.+.+++||+|+
T Consensus 2 ~r~Kv~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~h~~~-~~~----~~~v~~~~d~~~~~~aDvVV 76 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-FLK----NPKIEADKDYSVTANSKVVI 76 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCC-CCC----CCEEEECCCHHHHCCCCEEE
T ss_conf 9886999897888999999999669988799993889833268888660401-279----85599379999968999999
Q ss_pred CCC--CH--------------HHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 122--17--------------7766655553320356850552375200
Q gi|254781039|r 80 FAT--SS--------------KGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 80 iav--ps--------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
++. |. .-++++.+.+.++- ++..++.++.-.+
T Consensus 77 itAG~~~k~g~~R~dLl~~N~~I~~~i~~~i~~~~-p~~ivivvsNPvD 124 (312)
T cd05293 77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVSNPVD 124 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEECCCCHH
T ss_conf 88999999898889999988999999999988419-9846996689189
No 70
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.19 E-value=8.6e-06 Score=57.34 Aligned_cols=105 Identities=12% Similarity=0.187 Sum_probs=64.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHC
Q ss_conf 888779997788789999999997799-8189994498999999977898422798817874389731687755554411
Q gi|254781039|r 2 KNYSTIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLF 80 (329)
Q Consensus 2 ~~~~kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIii 80 (329)
++.+||+|||+|..|+++|..|..++. .++.|++++++.++.-...-.+...+. -+..+. +.+.+.+++||+|++
T Consensus 4 ~k~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiD~~~~~a~g~a~Dl~h~~~~~---~~~~i~-~gdy~~~~daDvVVi 79 (315)
T PRK00066 4 KKHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT---SPTKIY-AGDYSDCKDADLVVI 79 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC---CCCEEE-ECCHHHHCCCCEEEE
T ss_conf 7898499999798899999999866998889998089871078999888541236---884797-399999679999998
Q ss_pred CC--CH--------------HHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 22--17--------------776665555332035685055237520
Q gi|254781039|r 81 AT--SS--------------KGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 81 av--ps--------------~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
+. |. .-++++.+++.++- ++..++.+|.-.
T Consensus 80 tAG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvtNPv 125 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPV 125 (315)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCH
T ss_conf 9999899999878999878999999887764248-853999936918
No 71
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.19 E-value=9.1e-06 Score=57.18 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=64.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC-
Q ss_conf 779997788789999999997799-818999449899999997789842279881787438973168775555441122-
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT- 82 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav- 82 (329)
+||+|||+|+-|+++|..|..++. .++.|++++++.++....+-.+...+. ..+..+..+.+.+.+++||+|+++.
T Consensus 1 mKI~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~--~~~~~i~~~~d~~~~~daDiVVitag 78 (312)
T PRK06223 1 MKISIIGAGNVGATLAHLLALKELGKDVVLFDIPEGIPQGKALDIAESSAVD--GFDAKITGTNDYADIAGSDVVIITAG 78 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC--CCCCEEEECCCHHHHCCCCEEEEECC
T ss_conf 9799999698999999999857998748997699973367988876514336--88847983788899579999999067
Q ss_pred -CH--------------HHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf -17--------------7766655553320356850552375200
Q gi|254781039|r 83 -SS--------------KGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 83 -ps--------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
|. .-++++.+++.++- ++..++.++.-.+
T Consensus 79 ~~rk~g~tR~dll~~N~~I~k~i~~~i~~~~-p~~iilvvsNPvD 122 (312)
T PRK06223 79 VPRKPGMSRDDLLGINAKIMKDVGEGIKKYA-PDAIVIVITNPVD 122 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCHH
T ss_conf 7899998868999987899999999998409-9818999369368
No 72
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket . This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=98.12 E-value=5e-06 Score=58.88 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=90.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH-
Q ss_conf 7999778878999999999779981899944989999999778984227988178743897316877555544112217-
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS- 84 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps- 84 (329)
.|+|||-+.||+=||-=.+++|+ .|.+|.|++++++.+-+++-+.+.+.+.. .+.+..+.|+..-=|++=|++
T Consensus 1 diGviGLAVMG~NLaLN~~d~GF-~V~VyNRt~~Ktd~fl~~~~~gk~i~g~~-----~ieeFV~~Le~PRKImLMVkAG 74 (480)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVAVYNRTPEKTDEFLKERAKGKKIVGAY-----SIEEFVQSLERPRKIMLMVKAG 74 (480)
T ss_pred CCCEEEECHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCCCCCCCCCC-----CHHHHHHHCCCCCEEEEEEECC
T ss_conf 95158604135789998874698-27997268479999986037888533432-----6799998506887288877538
Q ss_pred HHH--HHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHC-------CCEECCCCCH
Q ss_conf 776--6655553320356850552375200025854310123321001-------2100128881
Q gi|254781039|r 85 KGY--GEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSH-------SISVLSGPGF 140 (329)
Q Consensus 85 ~~~--~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~-------~~~vlsGPs~ 140 (329)
..+ ++++++|+|+|.+.-+||.==.-..++|-++..|+-++-+.-. --.++.|||+
T Consensus 75 ~pVdaD~~I~~L~P~LE~GDiIIDGGNS~Y~DT~RR~~eL~~~Gi~FvG~GvSGGEeGAl~GPSi 139 (480)
T TIGR00873 75 APVDADAVINSLLPLLEKGDIIIDGGNSHYKDTERRYKELKAKGILFVGVGVSGGEEGALKGPSI 139 (480)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHCCCCCC
T ss_conf 85377899999644358998887588788466578999998649816730132453021378877
No 73
>KOG2666 consensus
Probab=98.12 E-value=1.4e-05 Score=56.01 Aligned_cols=205 Identities=20% Similarity=0.222 Sum_probs=125.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHCCCCCCCCCCCC------CCCCEEEEEC-HHHHHHH
Q ss_conf 877999778878999999999779-9818999449899999997789842279881------7874389731-6877555
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRG-LANVTLLGRKEILMQQLEDTRINAKALPGIK------LSPLLNFSSD-HTLLQNA 75 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g-~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~------l~~~i~~t~~-~~~l~~a 75 (329)
|.||+-||+|..|---....+.+- .-+|.+.+.+...+..-|..+ -|.|-||+. --+|+-+++| .++++++
T Consensus 1 ~~KicCiGAGYVGGPT~aviAlkCP~i~vtvVD~s~~rInaWNSd~-LPIYEPGLdevVk~cRgkNLFFStdiek~i~Ea 79 (481)
T KOG2666 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDK-LPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEA 79 (481)
T ss_pred CCEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHCCCCC-CCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHC
T ss_conf 9359995677668830644310389548999866837765016888-865687779999983487515515668776542
Q ss_pred HHHHCCCCH---------------HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC-CCCHHHHHHH----HHCCCEEC
Q ss_conf 544112217---------------776665555332035685055237520002585-4310123321----00121001
Q gi|254781039|r 76 DIVLFATSS---------------KGYGEALNFYSNWLKESAEIIICSKGFEYNSGM-LLSSYSEKVL----PSHSISVL 135 (329)
Q Consensus 76 diIiiavps---------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~-~~se~i~~~~----~~~~~~vl 135 (329)
|+||+.|.. .+.+++.+.|..+-..+++++ |.+|-- .-.|-+++++ ++..+-+|
T Consensus 80 DlvFiSVNTPTKt~G~G~G~AaDL~Y~EsaaRmIa~~s~s~KIVv------EKSTVPVkaAEsI~~Il~hn~~gi~fqiL 153 (481)
T KOG2666 80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV------EKSTVPVKAAESIEKILNHNSKGIKFQIL 153 (481)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE------EECCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 569999379742226887765421689999999998717981799------62565504799999997268998335860
Q ss_pred CCCCHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHH---------H
Q ss_conf 28881789987----6532124677317899999975341113899738861444400025677889975---------2
Q gi|254781039|r 136 SGPGFARDIAQ----GLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGI---------L 202 (329)
Q Consensus 136 sGPs~A~Eia~----~~pt~~~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi---------~ 202 (329)
|.|-|-.|--. -.|-.+.+++.+ -+-|-+.-.+||.||+-=.-- .
T Consensus 154 SNPEFLAEGTAi~DL~npDRVLIGG~e----------------------tpeG~~Av~~L~~vY~~WvP~~~IitTN~WS 211 (481)
T KOG2666 154 SNPEFLAEGTAIKDLFNPDRVLIGGRE----------------------TPEGFQAVQALKDVYEHWVPREQIITTNTWS 211 (481)
T ss_pred CCHHHHHCCCHHHHHCCCCEEEECCCC----------------------CHHHHHHHHHHHHHHHHHCCHHHEEECCCCH
T ss_conf 684775064145541487738887877----------------------8257899999999998518611055415117
Q ss_pred HH-HCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 11-003805789999998999999998722544553
Q gi|254781039|r 203 KG-RGCGDSARAIVMVQGLSEIMKLTEAMNGRADTI 237 (329)
Q Consensus 203 ~g-l~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t~ 237 (329)
.. -++..|+--|----+++-|+-++++-|++.+-+
T Consensus 212 sELSKLaANAFLAQRISSiNs~SAlCEaTGAdvseV 247 (481)
T KOG2666 212 SELSKLAANAFLAQRISSINSMSALCEATGADVSEV 247 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 889999888999998743677899987407669999
No 74
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=98.11 E-value=7.6e-06 Score=57.70 Aligned_cols=76 Identities=26% Similarity=0.339 Sum_probs=58.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
.+++.|||+|.||..++..|.++|..+|+++.|+.+.++.+.+... +..+ .-+.+.+..+.+.++|+||.|++
T Consensus 12 ~~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~------~~~~-~~~~~~~l~~~l~~~DivI~aT~ 84 (134)
T pfam01488 12 GKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFG------GEEV-EALPLDELEELLAEADIVISATS 84 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCC------CCCE-EEEECHHHHHHHHHCCEEEEECC
T ss_conf 8989999960999999999997599889995475789999999849------9725-89851354413631999999259
Q ss_pred HHH
Q ss_conf 777
Q gi|254781039|r 84 SKG 86 (329)
Q Consensus 84 s~~ 86 (329)
+..
T Consensus 85 s~~ 87 (134)
T pfam01488 85 APT 87 (134)
T ss_pred CCC
T ss_conf 997
No 75
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.10 E-value=4.5e-05 Score=52.70 Aligned_cols=278 Identities=16% Similarity=0.219 Sum_probs=157.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
-++|+|||-|+=|.|-|.-|-++|. +|.+=-|...-.+.-.+. .....+-.++++.+|+|.+.+|
T Consensus 16 ~k~iaVIGYGsQG~AhAlNLrDSG~-~V~vglr~g~s~~~A~~~--------------Gf~v~~~~eA~~~aDvi~~L~p 80 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKAD--------------GFEVMSVSEAVRTAQVVQMLLP 80 (335)
T ss_pred CCEEEEEEECCHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHC--------------CCEECCHHHHHHHCCEEEEECC
T ss_conf 9979997567076898856476399-779997998569999987--------------9931679999985797875088
Q ss_pred HHHHHHHHH-HHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEE----CCCCCHH--HHHH--HHHHHHCCC
Q ss_conf 777666555-533203568505523752000258543101233210012100----1288817--8998--765321246
Q gi|254781039|r 84 SKGYGEALN-FYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISV----LSGPGFA--RDIA--QGLPVGVIL 154 (329)
Q Consensus 84 s~~~~~~l~-~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~v----lsGPs~A--~Eia--~~~pt~~~i 154 (329)
-....++.+ +|.|+++++. .+..+-||-.- ...+.|...+-| =-||.+. ++-. .|.|+-+.+
T Consensus 81 D~~q~~vy~~~i~p~lk~G~-~L~FaHGfnI~--------~~~I~pp~~vdV~mvAPKgpG~~VR~~y~~G~Gvp~l~AV 151 (335)
T PRK13403 81 DEQQAHVYKAEVEENLREGQ-MLLFSHGFNIH--------FGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAV 151 (335)
T ss_pred HHHHHHHHHHHHCCCCCCCC-EEEEECCCHHH--------CCEECCCCCCCEEEECCCCCCHHHHHHHHCCCCCCEEEEE
T ss_conf 58799999744255368997-23761443112--------2424578998679989999965799998717997459999
Q ss_pred C----CCHHHHHHHHHHHHCC-------CCEEEEECCCCCEEE--EEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 7----7317899999975341-------113899738861444--40002567788997521100380578999999899
Q gi|254781039|r 155 S----SKNIDISRRLSKILTT-------DSFRVYCSDDRIGVQ--IGGALKNVIAIASGILKGRGCGDSARAIVMVQGLS 221 (329)
Q Consensus 155 a----~~d~~~~~~i~~~~~~-------~~~~~~~s~D~~GvE--~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~ 221 (329)
. ++-.+.+..++.-.-. .+|+=.+-+|+.|=| +||.+--. |-+|+=--..-|.....|++- ++.
T Consensus 152 ~qD~sg~a~~~alaya~aiG~~raGv~eTtF~eEtetDLfGEQ~VLcGg~~~l--i~agFetLveaGy~Pe~AYfE-~lh 228 (335)
T PRK13403 152 HQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTAL--VKAGFETLTEGGYRPEIAYFE-CLH 228 (335)
T ss_pred EECCCCHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCCHHHHHHH-HHH
T ss_conf 76897539999999998617776775622518888765122246540289999--999999999869987999999-998
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCHHHHHHH-----HHCCCCCCHHCCCEECHHHHHHHHHHHHHHCCC
Q ss_conf 999999872254455320023210157764477530067877-----508907025729600319999999999998289
Q gi|254781039|r 222 EIMKLTEAMNGRADTILRLSGVGDLILTATSEQSRNFCFGIA-----LGRGEKQNPDQIQLVEGAIAVSCVINISKKMGL 296 (329)
Q Consensus 222 Em~~l~~~~g~~~~t~~glaG~GDl~~T~~s~~SRN~~~G~~-----lg~g~~~~~~~~~~vEG~~~~~~i~~l~~~~~~ 296 (329)
||+.++..+.-. |+..+...|+. --.||-+ +-. +...+.+.++.+-+.+-+-..+....+..
T Consensus 229 ElklIvdLi~e~--------G~~~M~~sISd----TAEYG~y~~g~rii~-~~~K~~Mk~vL~eIqsG~FAk~~~~en~~ 295 (335)
T PRK13403 229 ELKLIVDLMYEG--------GLTNMRHSISD----TAEFGDYVTGSRIVT-DETKKEMKRVLTEIQQGEFAKKWILENQA 295 (335)
T ss_pred HHHHHHHHHHHC--------CHHHHHHHCCC----HHHCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 899999999955--------83667601285----876387135761048-88899999999876188206777875259
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 87159999999807899899999984
Q gi|254781039|r 297 KLPIFQAISDVMMNHISVDEALSILL 322 (329)
Q Consensus 297 ~~Pi~~~v~~il~~~~~~~~~i~~L~ 322 (329)
..|-+.++.+...+. ..+.+=+.|+
T Consensus 296 G~p~l~~~r~~~~~H-~IE~VG~~LR 320 (335)
T PRK13403 296 GRPTYNAMKKAEQNH-QLEKVGAELR 320 (335)
T ss_pred CCHHHHHHHHHHHCC-CHHHHHHHHH
T ss_conf 978999999987569-7999999999
No 76
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.10 E-value=1.7e-05 Score=55.42 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=66.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHH--HCCCCCCCCCCCCCCCCEEE-EECHHHHHHHHHHHC
Q ss_conf 779997788789999999997799-81899944989999999--77898422798817874389-731687755554411
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQQLE--DTRINAKALPGIKLSPLLNF-SSDHTLLQNADIVLF 80 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~~i~--~~~~n~~~lp~i~l~~~i~~-t~~~~~l~~adiIii 80 (329)
+||+|||+|+.|+++|..|..++. .++.|++++++.++... -.|... .++...++ +.+.+.+++||+|++
T Consensus 1 rKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~G~a~DL~~~~~------~~~~~~~i~~~~~~~~~~aDvvVi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALA------FLPSPVKIKAGDYSDCKDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH------HCCCCEEEEECCHHHHCCCCEEEE
T ss_conf 95999996988999999998579987799981898701769998870133------059973996088788478999999
Q ss_pred CC--CH--------------HHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 22--17--------------7766655553320356850552375200
Q gi|254781039|r 81 AT--SS--------------KGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 81 av--ps--------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
+- |. .-++++.++++++ .++..++.++.-.+
T Consensus 75 tAG~~rk~g~~R~dLl~~N~~I~k~i~~~i~~~-~p~aivivvtNPvD 121 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNPVD 121 (306)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCHH
T ss_conf 067667999987899997899999999998722-99718999358167
No 77
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=98.08 E-value=4.9e-05 Score=52.44 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=56.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHH-----HHHHHHHH
Q ss_conf 7799977887899999999977998189994498999999977898422798817874389731687-----75555441
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTL-----LQNADIVL 79 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~-----l~~adiIi 79 (329)
+||.|+|+|..|+.||..|+..+ |+|.+..+|++.++.+.+.. .... +..+ .++.+. +++||+++
T Consensus 1 M~IiI~GaG~vG~~La~~Ls~e~-~dV~vID~d~~~~~~~~~~l-Dv~~-----i~Gd---~~~~~~L~~Agi~~ad~~I 70 (455)
T PRK09496 1 MKIIILGAGQVGGTLAERLVGEN-NDVTVIDTDEERLRRLQDRL-DVRT-----VVGN---GSHPDVLREAGAEDADMLI 70 (455)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHC-CEEE-----EEEC---CCCHHHHHHCCCCCCCEEE
T ss_conf 97999998889999999998689-97999989999999988625-8689-----9966---8999999965998699999
Q ss_pred CCCCHHHHHHHHHHHHHHC
Q ss_conf 1221777666555533203
Q gi|254781039|r 80 FATSSKGYGEALNFYSNWL 98 (329)
Q Consensus 80 iavps~~~~~~l~~i~~~l 98 (329)
-++.+....-+.-.+++.+
T Consensus 71 AvT~~De~Nli~~~lAk~l 89 (455)
T PRK09496 71 AVTDSDETNMVACQIAKSL 89 (455)
T ss_pred EECCCHHHHHHHHHHHHHH
T ss_conf 9579718999999999986
No 78
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.04 E-value=0.00013 Score=49.60 Aligned_cols=195 Identities=21% Similarity=0.295 Sum_probs=127.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH-HHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 88779997788789999999997799818999449899-99999778984227988178743897316877555544112
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL-MQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~-~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiia 81 (329)
+.++|+|||.|+=|.|-|.-|.++|. +|.+=-|.... .+.-.+. ...+.+-.++++.+|+|++-
T Consensus 17 kgK~iaIIGYGsQG~ahalNlRDSGl-nViiGlr~g~~s~~kA~~d--------------Gf~V~~v~ea~k~ADvim~L 81 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGL-NVIIGLRKGSSSWKKAKED--------------GFKVYTVEEAAKRADVVMIL 81 (338)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHC--------------CCEEECHHHHHHCCCEEEEE
T ss_conf 49869999027087888742242487-4799856887248999966--------------97751399985227999981
Q ss_pred CCHHHHHHHHH-HHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEC----CCCCHHH--HHH--HHHHHHC
Q ss_conf 21777666555-5332035685055237520002585431012332100121001----2888178--998--7653212
Q gi|254781039|r 82 TSSKGYGEALN-FYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVL----SGPGFAR--DIA--QGLPVGV 152 (329)
Q Consensus 82 vps~~~~~~l~-~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vl----sGPs~A~--Eia--~~~pt~~ 152 (329)
+|-....++.+ +|.|++++++ .+..+-||-.- ...+.|...+-|+ -||.+.- |-. .|.|+-+
T Consensus 82 ~PDe~q~~vy~~~I~p~Lk~G~-aL~FaHGfNih--------f~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~Li 152 (338)
T COG0059 82 LPDEQQKEVYEKEIAPNLKEGA-ALGFAHGFNIH--------FGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALI 152 (338)
T ss_pred CCHHHHHHHHHHHHHHHHCCCC-EEEECCCCCEE--------CCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 8654678999987434522786-67762655311--------33033776671899838999678999987369951699
Q ss_pred CCC----CCHHHHHHHHHHHHC-------CCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHH---------CCCCHHH
Q ss_conf 467----731789999997534-------11138997388614444000256778899752110---------0380578
Q gi|254781039|r 153 ILS----SKNIDISRRLSKILT-------TDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGR---------GCGDSAR 212 (329)
Q Consensus 153 ~ia----~~d~~~~~~i~~~~~-------~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl---------~~g~N~~ 212 (329)
.+- ++-.+.+..++.-.- -.+|+-.+-+|+.|=|. +.||.+.++ ..|....
T Consensus 153 AV~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~---------vLcGgl~~li~agfetLvEaGy~PE 223 (338)
T COG0059 153 AVHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQA---------VLCGGLQALIKAGFETLVEAGYQPE 223 (338)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCHH---------HHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9986688509999999997618876314764208766401111211---------1200799999998999998499888
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 9999998999999998722
Q gi|254781039|r 213 AIVMVQGLSEIMKLTEAMN 231 (329)
Q Consensus 213 aal~~~g~~Em~~l~~~~g 231 (329)
.|++- .+.|+..+++.+.
T Consensus 224 ~AyfE-~lhE~klIvdLiy 241 (338)
T COG0059 224 LAYFE-CLHELKLIVDLIY 241 (338)
T ss_pred HHHHH-HHHHHHHHHHHHH
T ss_conf 99999-9999999999999
No 79
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.03 E-value=0.00011 Score=50.17 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=62.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE---CHHHHHHHHHHHC
Q ss_conf 8779997788789999999997799818999449899999997789842279881787438973---1687755554411
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS---DHTLLQNADIVLF 80 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~---~~~~l~~adiIii 80 (329)
|+||.|||+|..|++.|.-|+.++..+|++-+|+.+..+++..... +.++. -.+.+.+ ..+.+++.|++|-
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~-~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEA-LQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC-----CCCEE-EEECCCCHHHHHHHHHCCCEEEE
T ss_conf 9728998986667999999985789629998488889999875334-----66316-99425675889998725778999
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 22177766655553
Q gi|254781039|r 81 ATSSKGYGEALNFY 94 (329)
Q Consensus 81 avps~~~~~~l~~i 94 (329)
|.|...-..+++..
T Consensus 75 ~~p~~~~~~i~ka~ 88 (389)
T COG1748 75 AAPPFVDLTILKAC 88 (389)
T ss_pred ECCCHHHHHHHHHH
T ss_conf 28705429999999
No 80
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.01 E-value=2.6e-05 Score=54.28 Aligned_cols=101 Identities=15% Similarity=0.299 Sum_probs=65.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHH--HHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 779997788789999999997799-818999449899999--99778984227988178743897316877555544112
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQQ--LEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~~--i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiia 81 (329)
+||+|||+|..|+++|..|..++. .++.|++++++.++. +.-.|..+ +. +.....+.+.+.+++||+|+++
T Consensus 1 mKI~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~DL~~a~~-~~-----~~~~i~~~~~~~l~daDvVVit 74 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTP-FV-----KPVRIYAGDYADCKGADVVVIT 74 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCC-CC-----CCCEEEECCHHHHCCCCEEEEC
T ss_conf 97999994888999999998679988799991889845125687662410-36-----8816840999997799999989
Q ss_pred C--CH--------------HHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 2--17--------------7766655553320356850552375200
Q gi|254781039|r 82 T--SS--------------KGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 82 v--ps--------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
. |. .-++++.++++++- ++..++.++.-.+
T Consensus 75 aG~~rk~g~tR~dll~~Na~I~~~i~~~i~~~~-p~~ivivvsNPvD 120 (308)
T cd05292 75 AGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTNPVD 120 (308)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEECCCCHH
T ss_conf 999999899878999888999999999998419-9808997279547
No 81
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=98.01 E-value=1.8e-05 Score=55.22 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=62.7
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC
Q ss_conf 779997788-789999999997799-818999449899999997789842279881787438973168775555441122
Q gi|254781039|r 5 STIFVIGAG-AFGTALSSVIASRGL-ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT 82 (329)
Q Consensus 5 ~kI~ViGaG-a~GtAlA~~La~~g~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav 82 (329)
+||+|||+| +.|+++|..|..++. .++.|++++++.++.....-.+.. +. ..+..+..+.+.+.+++||+|+++.
T Consensus 1 mKV~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~--~~-~~~~~~~~~~~~~~~~daDiVVita 77 (142)
T pfam00056 1 VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGS--TF-LSVPGIVGGDDYEALKDADVVVITA 77 (142)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCC--CC-CCCCEEECCCCHHHHCCCCEEEEEC
T ss_conf 98999898778999999999747966347885057764117999986144--34-7887697488388837899999815
Q ss_pred CH----------------HHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 17----------------776665555332035685055237520
Q gi|254781039|r 83 SS----------------KGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 83 ps----------------~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
-. .-++++.++++++- ++..++.++.-.
T Consensus 78 G~~~k~g~~R~dll~~Na~I~~~i~~~i~~~~-p~~ivivvtNPv 121 (142)
T pfam00056 78 GVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSA-PDAIVLVVSNPV 121 (142)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEECCCH
T ss_conf 77789998778999974699999999999769-981999945946
No 82
>pfam02153 PDH Prephenate dehydrogenase. Members of this family are prephenate dehydrogenases EC:1.3.1.12 involved in tyrosine biosynthesis.
Probab=98.01 E-value=4.5e-05 Score=52.69 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=89.5
Q ss_pred HHHHHHHCCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9999997799-818999449899999997789842279881787438973168775555441122177766655553320
Q gi|254781039|r 19 LSSVIASRGL-ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSSKGYGEALNFYSNW 97 (329)
Q Consensus 19 lA~~La~~g~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps~~~~~~l~~i~~~ 97 (329)
||..|.+.|. .+|+-|+++++..+.-.+.+.- + ...++.+.+.++|+||+|+|...+.++++++.++
T Consensus 1 lAlalk~~~~~~~I~g~d~~~~~~~~A~~~g~i----------d--~~~~~~~~~~~aDlvila~Pv~~~~~~l~~l~~~ 68 (258)
T pfam02153 1 IALALRRKGFNVTVIGYDIDEEAAVAAVELGLG----------D--EATNDIEAAQEADIVVLAVPIEVTLEVLKELAPH 68 (258)
T ss_pred CHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCC----------C--CCCCCHHHHCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 928886169996799985999999999986990----------3--2468677766799999969999999999998865
Q ss_pred CCCCCCEEEC--CCCCCCCCCCCCCHHHHH-------HHHHCCCEE--CCCCCHHH-HHHHHHHHHCCCC-CCHHHHHHH
Q ss_conf 3568505523--752000258543101233-------210012100--12888178-9987653212467-731789999
Q gi|254781039|r 98 LKESAEIIIC--SKGFEYNSGMLLSSYSEK-------VLPSHSISV--LSGPGFAR-DIAQGLPVGVILS-SKNIDISRR 164 (329)
Q Consensus 98 l~~~~~ii~~--sKGi~~~t~~~~se~i~~-------~~~~~~~~v--lsGPs~A~-Eia~~~pt~~~ia-~~d~~~~~~ 164 (329)
+++++.|..+ +|+- +.+.+++ +++.+|++- -+||..|. ++.++.+..++=. ..+.+..+.
T Consensus 69 ~~~~~ivtDv~SvK~~-------i~~~~~~~~~~~~~fvg~HPMaG~e~sG~~~a~~~LF~~~~~il~p~~~~~~~~~~~ 141 (258)
T pfam02153 69 LKEGALITDVGSVKVE-------IVKDAEQLLSDGVGFIPGHPMAGTEKSGPDAARANLFENAPVILTPTEKTDTEALAL 141 (258)
T ss_pred CCCCCEEEECCCCCHH-------HHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHH
T ss_conf 5899589953555579-------999999855567864605886478767701100125417159961888887999999
Q ss_pred HHHHHCCCCEEEEE
Q ss_conf 99753411138997
Q gi|254781039|r 165 LSKILTTDSFRVYC 178 (329)
Q Consensus 165 i~~~~~~~~~~~~~ 178 (329)
+.++++.-..+++.
T Consensus 142 v~~l~~~lGa~~~~ 155 (258)
T pfam02153 142 VRELLEGIGAKVIL 155 (258)
T ss_pred HHHHHHHCCCEEEE
T ss_conf 99999986996998
No 83
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=97.95 E-value=1.2e-05 Score=56.50 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=60.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE-----ECHHHHHHHHHH
Q ss_conf 877999778878999999999779981899944989999999778984227988178743897-----316877555544
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS-----SDHTLLQNADIV 78 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t-----~~~~~l~~adiI 78 (329)
-+|+.|||||.||.-.|.+|..+|..+|.+..|+.+.++.+-+. +++ |..+.+. +..+.+..+|+|
T Consensus 185 ~~~~LliGAGeMg~Lva~~L~~~~v~~~~i~NRt~~rA~~LA~e------~~~---P~~~~f~~La~~~L~~~L~~~Div 255 (436)
T TIGR01035 185 GKKVLLIGAGEMGELVAKHLREKGVGKVLIANRTYERAEKLAKE------LGG---PEAVKFEALALEKLEEALAEADIV 255 (436)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH------CCC---CCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf 64189982745799999999648952898855677899999987------078---664544455489999997428899
Q ss_pred HCCCCHHH
Q ss_conf 11221777
Q gi|254781039|r 79 LFATSSKG 86 (329)
Q Consensus 79 iiavps~~ 86 (329)
|.||-+..
T Consensus 256 issTgA~~ 263 (436)
T TIGR01035 256 ISSTGAPE 263 (436)
T ss_pred EEECCCCC
T ss_conf 98557653
No 84
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.93 E-value=4.7e-05 Score=52.59 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=60.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
-++|.|||+|.||...+..|.+.|..++++..|+.+.++.+.+.. +.+ -+.+.+..+.+.++|+||.|+.
T Consensus 178 ~~~vLviGaGem~~l~~~~L~~~g~~~i~v~nRt~~ra~~la~~~-g~~---------~~~~~~l~~~l~~~DvvisaT~ 247 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-GGN---------AVPLDELLELLNEADVVISATG 247 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC-CCE---------EECHHHHHHHHHHCCEEEEECC
T ss_conf 167999868799999999999659982599768678999999974-989---------9729999999976899999279
Q ss_pred HHHHHHHHHHH
Q ss_conf 77766655553
Q gi|254781039|r 84 SKGYGEALNFY 94 (329)
Q Consensus 84 s~~~~~~l~~i 94 (329)
|....-..+.+
T Consensus 248 s~~~~~~~~~~ 258 (311)
T cd05213 248 APHYAKIVERA 258 (311)
T ss_pred CCCCHHHHHHH
T ss_conf 99620359999
No 85
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.92 E-value=6e-05 Score=51.87 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=61.0
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 877999778-87899999999977998-1899944989999999778984227988178743897316877555544112
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGLA-NVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~-~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiia 81 (329)
|.||+|||| |+-|+++|..|..++.. ++.|++.++...+.+.-.|.... .....+...+..+.+++||+|+++
T Consensus 1 m~KV~IIGA~G~VG~s~A~~l~~~~~~~elvL~Di~~a~g~a~Dl~~~~~~-----~~~~~~~~~~~~e~~~~aDIVVit 75 (313)
T PTZ00325 1 MFKVAVLGAAGGIGQPLSLLLKRNPYVSTLSLYDIVGAPGVAADLSHIPSP-----AKVTGYAKGELHKAVDGADVVLIV 75 (313)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCC-----CCCCEECCCCHHHHHCCCCEEEEC
T ss_conf 938999899986999999999838997779998089726689888675553-----566545279888984899899988
Q ss_pred CCH----------------HHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 217----------------776665555332035685055237520
Q gi|254781039|r 82 TSS----------------KGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 82 vps----------------~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
.-. .-++++.+++.++- ++..++.++.-.
T Consensus 76 aG~~rkpg~tR~dLl~~N~~I~~~i~~~i~~~~-~~aiiivvtNPv 120 (313)
T PTZ00325 76 AGVPRKPGMTRDDLFNTNAGIVRDLVLACASSA-PKAIFGIITNPV 120 (313)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEECCCCH
T ss_conf 898899789689999970699999999999769-980999736824
No 86
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.92 E-value=2.9e-05 Score=53.90 Aligned_cols=103 Identities=19% Similarity=0.325 Sum_probs=67.0
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCEEEEEECCHHH--HHH--HHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHH
Q ss_conf 77999778-878999999999779-9818999449899--999--99778984227988178743897316877555544
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRG-LANVTLLGRKEIL--MQQ--LEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIV 78 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g-~~~V~l~~r~~~~--~~~--i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiI 78 (329)
+||+|+|+ |+-|+++|..|..++ ..++.|++++++. ++. +.-.|... -...+.++...++.+.+++||+|
T Consensus 1 mKV~IiGAaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~a~g~a~Dl~~~~~----~~~~~~~i~~~~d~~~~~daDiv 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALA----AAGIDAEIKISSDLSDVAGSDIV 76 (309)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHCCCC----CCCCCCEEEECCCHHHHCCCCEE
T ss_conf 98999999976999999999837998759996055643423112355450343----36887679827988996899999
Q ss_pred HCCCCH----------------HHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 112217----------------7766655553320356850552375200
Q gi|254781039|r 79 LFATSS----------------KGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 79 iiavps----------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
+++.-. .-++++.+.+.++- ++..++.++.-.+
T Consensus 77 VitAG~~rk~g~tR~dLl~~Na~I~~~i~~~i~~~~-p~~ivivvtNPvD 125 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVD 125 (309)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHH
T ss_conf 987898899599878999989999999998764269-9849997689657
No 87
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.92 E-value=3.8e-05 Score=53.13 Aligned_cols=100 Identities=22% Similarity=0.302 Sum_probs=64.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC--
Q ss_conf 99977887899999999977998189994498999999--97789842279881787438973168775555441122--
Q gi|254781039|r 7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQL--EDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT-- 82 (329)
Q Consensus 7 I~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i--~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav-- 82 (329)
|+|||+|.-|+++|..|..++..++.|++++++.++.. .-.|.-+ + ..-+..+..+++.+.++++|+|+++.
T Consensus 1 V~IIGaG~VG~~~a~~l~~~~~~el~L~D~~~~~a~g~a~DL~~~~~--~--~~~~~~v~~~~d~~~~~daDvvVitaG~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAP--I--LGSDTKVTGTNDYEDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH--C--CCCCCEEEECCCHHHHCCCCEEEEECCC
T ss_conf 98989688899999999857996799980999800579887761320--1--5898589947887994799899990677
Q ss_pred CH--------------HHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 17--------------776665555332035685055237520
Q gi|254781039|r 83 SS--------------KGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 83 ps--------------~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
|. .-++++.+++.++- ++..++.++.-.
T Consensus 77 ~~k~g~tR~dLl~~N~~I~~~i~~~i~~~~-p~~i~lvvsNPv 118 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPL 118 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEECCCCH
T ss_conf 899899889999988999999999999659-984899827938
No 88
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.89 E-value=2.8e-05 Score=54.03 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHH---HHHHHHHHCCCCH-HHHHH
Q ss_conf 899999999977998189994498999999977898422798817874389731-687---7555544112217-77666
Q gi|254781039|r 15 FGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTL---LQNADIVLFATSS-KGYGE 89 (329)
Q Consensus 15 ~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~---l~~adiIiiavps-~~~~~ 89 (329)
||..||..|+++| ++|.+|.|+.+.++.+.+.+.. .+++....+ .+. ++....|++-||+ ..+++
T Consensus 1 MG~nlAlNl~~~G-~~V~vynRt~~k~~~~~~~~~~---------~~~~~~~~~l~e~v~sl~~PR~IilmV~aG~~vD~ 70 (459)
T PRK09287 1 MGKNLALNIASNG-YTVAVYNRTPEKTDEFLAEEAK---------GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CCHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHCCC---------CCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 9689999999789-8589973988999999981487---------67850358999999736788879998168842999
Q ss_pred HHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECC-CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 55553320356850552375200025854310123321001210012-88817899876532124677317899999975
Q gi|254781039|r 90 ALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLS-GPGFARDIAQGLPVGVILSSKNIDISRRLSKI 168 (329)
Q Consensus 90 ~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vls-GPs~A~Eia~~~pt~~~ia~~d~~~~~~i~~~ 168 (329)
+++++.|+++++.+||....-.-.+|.+ ..+.+....+-++. |=|==.|=|+.-| ++.+++ |.+..+.+..+
T Consensus 71 vI~~L~~~L~~gDIiIDgGNS~y~dT~r-----R~~~l~~kgI~Flg~GVSGGe~GAr~Gp-SiM~GG-~~~a~~~v~pi 143 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYTDTIR-----REKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGG-QKEAYELVAPI 143 (459)
T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHH-----HHHHHHHCCCEEECCCCCCCHHHHHCCC-CCCCCC-CHHHHHHHHHH
T ss_conf 9999985088999898799976433799-----9999997599064578888745675397-216789-88899999999
Q ss_pred HCC
Q ss_conf 341
Q gi|254781039|r 169 LTT 171 (329)
Q Consensus 169 ~~~ 171 (329)
|..
T Consensus 144 le~ 146 (459)
T PRK09287 144 LEK 146 (459)
T ss_pred HHH
T ss_conf 999
No 89
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase; InterPro: IPR011548 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators . 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterised 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate . HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase. ; GO: 0008442 3-hydroxyisobutyrate dehydrogenase activity, 0051287 NAD binding.
Probab=97.89 E-value=0.00012 Score=49.82 Aligned_cols=191 Identities=16% Similarity=0.168 Sum_probs=140.5
Q ss_pred EECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCHH-HH
Q ss_conf 97788789999999997799818999449899999997789842279881787438973168775555441122177-76
Q gi|254781039|r 9 VIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSSK-GY 87 (329)
Q Consensus 9 ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps~-~~ 87 (329)
.||-||||--+|.=|.+.| |+|++|+-.++.++.+.+.+.. .+.+-.++..++|+||-=.|+. ++
T Consensus 1 FIGLGNMGgPMA~NL~KAG-H~v~~FDL~p~av~~~v~aG~~-------------~A~S~~~a~~~Ad~vITMLPAg~HV 66 (290)
T TIGR01692 1 FIGLGNMGGPMAANLLKAG-HAVRVFDLSPKAVEELVEAGAQ-------------AAASAAEAAEGADVVITMLPAGKHV 66 (290)
T ss_pred CCCCCCCCHHHHHHHHHHC-CEEEEEECCHHHHHHHHHCCHH-------------CCCCHHHHHCCCCEEEECCCCCHHH
T ss_conf 9788888227999986118-7257751788999999960022-------------0545798845588686348860348
Q ss_pred HHHH---HHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHH---HHCCCEECCCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 6655---553320356850552375200025854310123321---0012100128881789987653212467731789
Q gi|254781039|r 88 GEAL---NFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVL---PSHSISVLSGPGFARDIAQGLPVGVILSSKNIDI 161 (329)
Q Consensus 88 ~~~l---~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~---~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~~~ 161 (329)
++++ +.|.+.++++.++|.|| =|++++-+-+.+...++- -+-|+ ||=.=+-+ .|-.|.+| +-..+.
T Consensus 67 ~sVY~gd~gIL~~~~K~~LlIDcS-TIDpdsAr~~A~~Aa~~G~~f~DAPV---SGG~GgA~--AGTLtFmV--GG~a~~ 138 (290)
T TIGR01692 67 ISVYSGDDGILAKVAKGSLLIDCS-TIDPDSARKVAELAAAHGLVFVDAPV---SGGVGGAR--AGTLTFMV--GGEAEE 138 (290)
T ss_pred HHHHHCCHHHHCCCCCCCCEEECC-CCCHHHHHHHHHHHHHCCCCEECCCC---CCCHHHHH--HCCCEEEE--CCCHHH
T ss_conf 999833133411367889633245-67867899999999981872103677---75356520--12230564--376535
Q ss_pred HHHHHHHHCCCC-EEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 999997534111-389973886144440002567788997521100380578999999899999999872254455320
Q gi|254781039|r 162 SRRLSKILTTDS-FRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILR 239 (329)
Q Consensus 162 ~~~i~~~~~~~~-~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t~~g 239 (329)
.++.+.+|+.=- -.+|.-++=-| | +-+.=+|..=.+.-.|..|=..|++++|-+|..+++
T Consensus 139 F~~~~p~L~~Mg~~~~HcG~~GAG-Q-----------------~AKICNNmlLGIsM~GtaEA~~Lg~klGLdp~~L~~ 199 (290)
T TIGR01692 139 FARARPVLEPMGRNIVHCGDHGAG-Q-----------------AAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFE 199 (290)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCC-C-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 788999985366656866888875-1-----------------578998899999899999999999861788889999
No 90
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=4.2e-05 Score=52.86 Aligned_cols=172 Identities=19% Similarity=0.166 Sum_probs=103.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHC
Q ss_conf 98887799977887899999999977998189994498999999977898422798817874389731687755554411
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLF 80 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIii 80 (329)
|.+ ..|+|||-|.||+-||--.+++| ..|.+|.|..+..+.+-+++...+ ++ -+--.+.+....++..--|++
T Consensus 1 ~~~-~~iGviGLaVMG~NLaLNi~~~G-~~VavyNRt~~ktd~f~~~~~~~k---~i--~~~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 1 MMK-ADIGVIGLAVMGSNLALNIADHG-YTVAVYNRTTEKTDEFLAERAKGK---NI--VPAYSIEEFVASLEKPRKILL 73 (473)
T ss_pred CCC-CCCCEEEHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCC---CC--CCCCCHHHHHHHHCCCCEEEE
T ss_conf 986-61005731030277888887449-669998087788999998275688---64--566859999987158846999
Q ss_pred CCCH-HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCHH
Q ss_conf 2217-776665555332035685055237520002585431012332100121001288817899876532124677317
Q gi|254781039|r 81 ATSS-KGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNI 159 (329)
Q Consensus 81 avps-~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~ 159 (329)
-|.+ ..++.++++++|++.++-++|.--.-..++|-++..+..++-+ ..+=+|=|=-+|=|+.-|+-+.=+.+
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi----~FvG~GVSGGEeGA~~GPSiMpGG~~-- 147 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGI----LFVGMGVSGGEEGARHGPSIMPGGQK-- 147 (473)
T ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCC----EEEECCCCCCCCCCCCCCCCCCCCCH--
T ss_conf 982699278999998752578898986887678207899999886388----48951666652100249876999998--
Q ss_pred HHHHHHHHHH-------CCCCEEEEECCCCCEE
Q ss_conf 8999999753-------4111389973886144
Q gi|254781039|r 160 DISRRLSKIL-------TTDSFRVYCSDDRIGV 185 (329)
Q Consensus 160 ~~~~~i~~~~-------~~~~~~~~~s~D~~Gv 185 (329)
+..+.++.+| ..+..-.|...|=-|.
T Consensus 148 eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGH 180 (473)
T COG0362 148 EAYELVAPILTKIAAKVDGEPCCTWIGPDGAGH 180 (473)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 899999999999875339998525378999775
No 91
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.88 E-value=4.9e-05 Score=52.42 Aligned_cols=101 Identities=23% Similarity=0.307 Sum_probs=62.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHH--HHHCCCCCCCCCCCCCCCCEEE-EECHHHHHHHHHHHCC
Q ss_conf 79997788789999999997799-818999449899999--9977898422798817874389-7316877555544112
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQQ--LEDTRINAKALPGIKLSPLLNF-SSDHTLLQNADIVLFA 81 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~~--i~~~~~n~~~lp~i~l~~~i~~-t~~~~~l~~adiIiia 81 (329)
||+|||+|.-|+++|..|..++. .++.|++++++.++. +.-.|..+ +...++..+ +.+.+.+++||+|+++
T Consensus 1 KI~IIGaG~VG~~~A~~l~~~~~~~elvL~Di~~~~a~g~a~Dl~h~~~-----~~~~~~~~~~~~~y~~~~~aDiVVit 75 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATA-----LTYSTNTKIRAGDYDDCADADIIVIT 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCC-----CCCCCCEEECCCCHHHHCCCCEEEEC
T ss_conf 9899996989999999998569988799992889823799998761203-----58998658667998994699999986
Q ss_pred C--CH--H--------------HHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 2--17--7--------------766655553320356850552375200
Q gi|254781039|r 82 T--SS--K--------------GYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 82 v--ps--~--------------~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
. |. . -++++.++++++ .++..++.+|.-.+
T Consensus 76 aG~~~kpg~t~~R~dL~~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvD 123 (307)
T cd05290 76 AGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLD 123 (307)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCHH
T ss_conf 7776589998358888885789999999998613-99749998479388
No 92
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.85 E-value=0.00013 Score=49.59 Aligned_cols=201 Identities=19% Similarity=0.284 Sum_probs=126.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC
Q ss_conf 877999778878999999999779981899944989-9999997789842279881787438973168775555441122
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI-LMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT 82 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~-~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav 82 (329)
-++|+|||-|+=|.|-|.-|-++|. +|.+=-|... -.+.-.+.+ ..+.+..++.+.+|+|.+.+
T Consensus 17 ~k~iaViGYGsQG~AhAlNLrDSG~-~V~vglr~gs~S~~kA~~dG--------------f~v~~~~eA~~~aDii~~L~ 81 (336)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREGSKSWKKAEADG--------------FEVLTVAEAAKWADVIMILL 81 (336)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHCC--------------CEECCHHHHHHHCCEEEEEC
T ss_conf 9979997527076898855374499-77999799980399999879--------------94367999997468665428
Q ss_pred CHHHHHHHHH-HHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEE----CCCCCHH--HHHH--HHHHHHCC
Q ss_conf 1777666555-533203568505523752000258543101233210012100----1288817--8998--76532124
Q gi|254781039|r 83 SSKGYGEALN-FYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISV----LSGPGFA--RDIA--QGLPVGVI 153 (329)
Q Consensus 83 ps~~~~~~l~-~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~v----lsGPs~A--~Eia--~~~pt~~~ 153 (329)
|-....++.+ +|.|+++++. .+..+-||-.- ...+.|...+-| =-||.+. ++-. .|.|+-+.
T Consensus 82 PD~~q~~vy~~~I~p~lk~G~-~L~FaHGFnIh--------y~~I~pp~~vDVimVAPKgpG~~VR~~y~~G~GvP~liA 152 (336)
T PRK05479 82 PDELQAEVYKEEIEPNLKEGA-ALAFAHGFNIH--------FGQIVPPADVDVIMVAPKGPGHLVRREYVEGGGVPCLIA 152 (336)
T ss_pred CHHHHHHHHHHHHHHHCCCCC-EEEEECCCHHC--------CCEEEECCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEE
T ss_conf 757789999999985458997-68861443000--------560444589767998889997689999863898048999
Q ss_pred CC----CCHHHHHHHHHHHHCCC-------CEEEEECCCCCEEE--EEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 67----73178999999753411-------13899738861444--4000256778899752110038057899999989
Q gi|254781039|r 154 LS----SKNIDISRRLSKILTTD-------SFRVYCSDDRIGVQ--IGGALKNVIAIASGILKGRGCGDSARAIVMVQGL 220 (329)
Q Consensus 154 ia----~~d~~~~~~i~~~~~~~-------~~~~~~s~D~~GvE--~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~ 220 (329)
+. ++-.+.+..++.-+-.. +|+=.+-+|+.|=| |||.+--.+ -+|+=-=..-|.....|++- ++
T Consensus 153 V~qD~sG~A~~~alaya~~iG~~raGvieTTF~eEtetDLfGEQ~VLcGG~~~Li--~agFetLveaGy~PE~AYfE-~l 229 (336)
T PRK05479 153 VHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELI--KAGFETLVEAGYQPEMAYFE-CL 229 (336)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHCHHHHHH--HHHHHHHHHCCCCHHHHHHH-HH
T ss_conf 9868873599999999987387766557425599988762445788624399999--99999999849988999999-99
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999998722
Q gi|254781039|r 221 SEIMKLTEAMN 231 (329)
Q Consensus 221 ~Em~~l~~~~g 231 (329)
.||+.+++.+.
T Consensus 230 hElKlIvDLi~ 240 (336)
T PRK05479 230 HELKLIVDLIY 240 (336)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 93
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.81 E-value=9.1e-05 Score=50.70 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=62.0
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEE---EEC-HHHHHHHHHH
Q ss_conf 77999778-8789999999997799-8189994498999999977898422798817874389---731-6877555544
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGL-ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF---SSD-HTLLQNADIV 78 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~---t~~-~~~l~~adiI 78 (329)
+||+|||| |+.|+++|..|..++. .++.|++.++...+.+.-.|... +..+.. ..+ .+++++||+|
T Consensus 1 mKV~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~g~a~DL~h~~~--------~~~v~~~~~~~~~~~~l~daDiV 72 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINT--------PAKVTGYLGPEELKKALKGADVV 72 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCC--------CCCEEEEECCCCHHHHHCCCCEE
T ss_conf 9899999998189999999972999776999827742667553216565--------68512570887466774799999
Q ss_pred HCCC--CH--------------HHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 1122--17--------------7766655553320356850552375200
Q gi|254781039|r 79 LFAT--SS--------------KGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 79 iiav--ps--------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
+++- |. .-++++.++++++- ++..++.+|.-.+
T Consensus 73 VitAG~~rkpG~tR~dLl~~N~~I~k~i~~~i~~~~-p~aiiivvtNPvD 121 (310)
T cd01337 73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPVN 121 (310)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECCHH
T ss_conf 987898899798989998740788999999998209-9849999708347
No 94
>KOG3124 consensus
Probab=97.76 E-value=0.00013 Score=49.64 Aligned_cols=155 Identities=16% Similarity=0.200 Sum_probs=93.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEEECCHHHHHH-HHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHC
Q ss_conf 779997788789999999997799---818999449899999-9977898422798817874389731687755554411
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGL---ANVTLLGRKEILMQQ-LEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLF 80 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~---~~V~l~~r~~~~~~~-i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIii 80 (329)
.+++.||+|.|..|++..+...|. +++..+..++..... +... +++ .++++.+.++.+|++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~--------g~~-----~~~~n~~~~~~s~v~~~ 67 (267)
T KOG3124 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL--------GVK-----TVFTNLEVLQASDVVFL 67 (267)
T ss_pred CCEEEECHHHHHHHHHHCCCCCCCCCHHHEEEECCCHHHHHHHHHCC--------CCE-----EEECHHHHHHHCCCEEE
T ss_conf 96358635556999971043468775222245257316666665507--------853-----44123777750653267
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHH-HHCCCEECCCCCHHHHHHHHHHHHCCCCC-CH
Q ss_conf 22177766655553320356850552375200025854310123321-00121001288817899876532124677-31
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVL-PSHSISVLSGPGFARDIAQGLPVGVILSS-KN 158 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~-~~~~~~vlsGPs~A~Eia~~~pt~~~ia~-~d 158 (329)
+++++.+.+++.++++.+...++++++.-|...++.. +.+ +..++.-+ -|+.+.-+-.+.- .+...+ ..
T Consensus 68 svKp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~-------~~l~~~~rviRv-mpNtp~~v~eg~s-v~~~g~~~~ 138 (267)
T KOG3124 68 SVKPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLE-------SKLSPPTRVIRV-MPNTPSVVGEGAS-VYAIGCHAT 138 (267)
T ss_pred EECCHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHH-------HHCCCCCCEEEE-CCCCHHHHHCCCE-EEEECCCCC
T ss_conf 5361127988604752122560899975144689889-------754887725881-4898003416747-985078741
Q ss_pred HHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 78999999753411138997388
Q gi|254781039|r 159 IDISRRLSKILTTDSFRVYCSDD 181 (329)
Q Consensus 159 ~~~~~~i~~~~~~~~~~~~~s~D 181 (329)
.+..+.+.++|++=-+-...-+|
T Consensus 139 ~~D~~l~~~ll~~vG~~~evpE~ 161 (267)
T KOG3124 139 NEDLELVEELLSAVGLCEEVPEK 161 (267)
T ss_pred HHHHHHHHHHHHHCCCCEECCHH
T ss_conf 54699999999863852107487
No 95
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.73 E-value=5.3e-05 Score=52.21 Aligned_cols=73 Identities=25% Similarity=0.378 Sum_probs=58.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
-++|.|||+|.||...+..|.+.|..+|++..|+.+.++.+.+.. +.. -+.+.+..+.+.++|+||.|+.
T Consensus 182 ~~~vlviGaGem~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~~-~~~---------~~~~~~l~~~l~~~DvvisaT~ 251 (429)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF-GAE---------AIPLEELPEALAEADIVISSTA 251 (429)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC-CCE---------EECHHHHHHHHHHCCEEEEECC
T ss_conf 065999767489999999998559984999758677899999975-988---------9749999999965899999448
Q ss_pred HHH
Q ss_conf 777
Q gi|254781039|r 84 SKG 86 (329)
Q Consensus 84 s~~ 86 (329)
+..
T Consensus 252 s~~ 254 (429)
T PRK00045 252 APH 254 (429)
T ss_pred CCC
T ss_conf 997
No 96
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.71 E-value=0.00011 Score=50.14 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=64.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC--C
Q ss_conf 9997788789999999997799-818999449899999997789842279881787438973168775555441122--1
Q gi|254781039|r 7 IFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT--S 83 (329)
Q Consensus 7 I~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav--p 83 (329)
|+|||+|+.|+++|..|..++. .++.|++++++.++.....-.+...+ .....+..+.+.+.+++||+|+++. |
T Consensus 1 V~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~---~~~~~~~~~~~~~~~~daDvvVitaG~~ 77 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAF---LATGTIVRGGDYADAADADIVVITAGAP 77 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCC---CCCCEEECCCCHHHHCCCCEEEECCCCC
T ss_conf 9898968899999999986799887999818998115688887725634---6885398279889967999999878989
Q ss_pred H--------------HHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 7--------------7766655553320356850552375200
Q gi|254781039|r 84 S--------------KGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 84 s--------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
. .-++++.+++.++ .++..++.++.-.+
T Consensus 78 rkpg~tR~dll~~Na~I~k~i~~~i~~~-~p~~ivivvtNPvD 119 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVVSNPVD 119 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCEEEECCCCHH
T ss_conf 9979988999998889999999999841-99718998579669
No 97
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.69 E-value=0.00021 Score=48.38 Aligned_cols=92 Identities=22% Similarity=0.259 Sum_probs=64.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 877999778878999999999779--981899944989999999778984227988178743897316877555544112
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRG--LANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g--~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiia 81 (329)
|.||+|||.|++|+.++..|.+.. ..=+.+|.|+.+..+.+..... . ...++..+.++++|+|+-|
T Consensus 1 M~rVgiIG~GaIG~~Va~~l~~g~~~~~L~~V~~r~~~~a~~~a~~~~-~-----------~~~~~ld~l~~~~DlVVE~ 68 (265)
T PRK13304 1 MLKIGIVGCGAIANLITKAIDSGRINAELLAFYDRNLEKAENLAEKTG-A-----------PACLSIDELVKDVDLVVEC 68 (265)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCC-C-----------CCCCCHHHHHHCCCEEEEC
T ss_conf 949999865789999999986799864999997898789887764159-9-----------7127989983389999989
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 21777666555533203568505523752
Q gi|254781039|r 82 TSSKGYGEALNFYSNWLKESAEIIICSKG 110 (329)
Q Consensus 82 vps~~~~~~l~~i~~~l~~~~~ii~~sKG 110 (329)
-+.+.+++....+.. .+..++.+|=|
T Consensus 69 A~~~av~~~~~~~L~---~G~dlvv~SvG 94 (265)
T PRK13304 69 ASQKAVEDTVPKSLN---NGKDVIIMSVG 94 (265)
T ss_pred CCHHHHHHHHHHHHH---CCCCEEEECHH
T ss_conf 898999999999997---59989998136
No 98
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.68 E-value=0.00031 Score=47.20 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=65.2
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCC----C--EEEEEECCH--HHHHH--HHHCCCCCCCCCCCCCCCCEEEEEC-HHHH
Q ss_conf 77999778-8789999999997799----8--189994498--99999--9977898422798817874389731-6877
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGL----A--NVTLLGRKE--ILMQQ--LEDTRINAKALPGIKLSPLLNFSSD-HTLL 72 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~----~--~V~l~~r~~--~~~~~--i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l 72 (329)
.||+|+|| |+.|..+|..|+.... . .+.|++.++ +.++. +.-.+. ..++...+..+++ .+++
T Consensus 1 ~KV~IiGA~G~IG~~la~~l~~~~l~g~~~~i~l~L~Di~~~~~~~~G~~mdl~~~------a~~~~~~v~~~~~~~~~~ 74 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDC------AFPLLKGVVITTDPEEAF 74 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHC------CCCCCCCEEECCCHHHHH
T ss_conf 98999899978999999999728636998600899975888655531487866534------665558748428858983
Q ss_pred HHHHHHHCCC--C--------------HHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 5555441122--1--------------77766655553320356850552375200
Q gi|254781039|r 73 QNADIVLFAT--S--------------SKGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 73 ~~adiIiiav--p--------------s~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
+++|+||+.- | ..-++++.+.+++|-+++..++.++.-.+
T Consensus 75 ~~aDvViitaG~prkpG~tR~DLl~~N~~I~k~~~~~i~~~a~p~~~vivvsNPvD 130 (323)
T cd00704 75 KDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN 130 (323)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf 79988998278788999827999987489999999999851799838999578646
No 99
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.65 E-value=0.00013 Score=49.74 Aligned_cols=103 Identities=21% Similarity=0.307 Sum_probs=66.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE--CHHHHHHHHHHHCC
Q ss_conf 7799977887899999999977998-18999449899999997789842279881787438973--16877555544112
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLA-NVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS--DHTLLQNADIVLFA 81 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~-~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~--~~~~l~~adiIiia 81 (329)
+||+|+|+|..|+++|..|...+.. ++.|++++++..+.-..+=.+..+ .++...++.. +.+.++++|++++.
T Consensus 1 ~KV~viGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~----~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA----PLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCHHHCCH----HCCCCEEEECCCCHHHHCCCCEEEEE
T ss_conf 93999898747899999996255566599997466656401102533400----02676188347870231699899996
Q ss_pred C--CH--------------HHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 2--17--------------7766655553320356850552375200
Q gi|254781039|r 82 T--SS--------------KGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 82 v--ps--------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
- |- .-++++.+++.++-. +..++.+|.-.+
T Consensus 77 AG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD 122 (313)
T COG0039 77 AGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVD 122 (313)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEECCCHH
T ss_conf 8888998997799998659999999999996599-729999459478
No 100
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.61 E-value=0.00026 Score=47.75 Aligned_cols=139 Identities=20% Similarity=0.302 Sum_probs=83.0
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCEEE-EEECCHH--HHHHHHHCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHH
Q ss_conf 877999778-87899999999977998189-9944989--999999778984227988178743897316-877555544
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGLANVT-LLGRKEI--LMQQLEDTRINAKALPGIKLSPLLNFSSDH-TLLQNADIV 78 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~-l~~r~~~--~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~-~~l~~adiI 78 (329)
|.||+|.|+ |.||.+++..+.++...++. .++|... .-+.+.. +.+.. +..+.++++. +.+.++|+|
T Consensus 2 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~l~~~i~~~~~~~~g~~~~~-------~~~~~-~~~~~~~~~l~~~~~~~DVv 73 (265)
T PRK00048 2 MIKVGVAGASGRMGRELIEAVEAAEDLELVAALDRPGSPLVGQDAGE-------LAGLG-KLGVPITDDLEAVLDDFDVL 73 (265)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH-------HCCCC-CCCCEECCCHHHHHCCCCEE
T ss_conf 45999988888779999999986899799999946897233653566-------52767-67843117898860559989
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCH
Q ss_conf 11221777666555533203568505523752000258543101233210012100128881789987653212467731
Q gi|254781039|r 79 LFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKN 158 (329)
Q Consensus 79 iiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d 158 (329)
|=-..+..+.+.++... +.+.++|+.|-|+..+....+. +. ...+.++--|||+--+.-=
T Consensus 74 IDFS~p~~~~~~~~~~~---~~~~~~ViGTTG~~~~~~~~i~----~~--s~~ipil~apNfSlGvnll----------- 133 (265)
T PRK00048 74 IDFTTPEATLENLEFAL---EHGKPLVIGTTGFTEEQLAALR----EA--AKKIPVVIAPNFSVGVNLL----------- 133 (265)
T ss_pred EECCCHHHHHHHHHHHH---HCCCCEEEEECCCCHHHHHHHH----HH--CCCCCEEEECCHHHHHHHH-----------
T ss_conf 98998899999999999---7499779960899989999999----74--6588789978558999999-----------
Q ss_pred HHHHHHHHHHHC
Q ss_conf 789999997534
Q gi|254781039|r 159 IDISRRLSKILT 170 (329)
Q Consensus 159 ~~~~~~i~~~~~ 170 (329)
..+.+..++.|.
T Consensus 134 ~~l~~~aa~~l~ 145 (265)
T PRK00048 134 MKLAEKAAKYLG 145 (265)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997566
No 101
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.60 E-value=0.00024 Score=48.00 Aligned_cols=64 Identities=23% Similarity=0.327 Sum_probs=46.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
.+|+|||+-.=-.-++..|++.| ++|.+|+-+... + .+..-....++.+++.++|+||+-+|-
T Consensus 3 ~~iaviGGD~Rq~~l~~~L~~~g-~~V~~~gf~~~~-------~---------~~~~~~~~~~~~~~~~~~d~iIlPvpg 65 (296)
T PRK08306 3 MHIAVIGGDARQLELIRKLVELG-AKVSLVGFDQLD-------H---------GFTGVAKCSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCC-------C---------CCCCEEEECCHHHHHHCCCEEEECCCC
T ss_conf 48999787589999999999779-979998357655-------5---------667617734678887239999978832
Q ss_pred H
Q ss_conf 7
Q gi|254781039|r 85 K 85 (329)
Q Consensus 85 ~ 85 (329)
.
T Consensus 66 ~ 66 (296)
T PRK08306 66 T 66 (296)
T ss_pred C
T ss_conf 2
No 102
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=97.59 E-value=0.00018 Score=48.72 Aligned_cols=90 Identities=21% Similarity=0.203 Sum_probs=65.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
++|+|+|.|+.|..+|..+..-| .+|..|+|...... . .......+..+.++.||+|++++|-
T Consensus 37 k~vgIiG~G~IG~~va~~l~~fg-~~V~~~d~~~~~~~--~--------------~~~~~~~~l~~ll~~sDii~~~~pl 99 (176)
T pfam02826 37 KTVGIIGLGRIGRAVARRLKAFG-MKVIAYDRYPKAEA--E--------------ALGARYVSLDELLAESDVVSLHLPL 99 (176)
T ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEEECCCCCCHH--H--------------HCCEEECCHHHHHHHCCEEEECCCC
T ss_conf 99999896999999999999839-81254379876102--3--------------1571666899998629988754767
Q ss_pred HH-HHHHH-HHHHHHCCCCCCEEECCCCC
Q ss_conf 77-66655-55332035685055237520
Q gi|254781039|r 85 KG-YGEAL-NFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 85 ~~-~~~~l-~~i~~~l~~~~~ii~~sKGi 111 (329)
.. .+..+ ++.-..++++..+|+++.|=
T Consensus 100 t~~T~~li~~~~l~~mk~~a~lIN~sRG~ 128 (176)
T pfam02826 100 TPETRHLINAERLALMKPGAILINTARGG 128 (176)
T ss_pred CCCCCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf 42024634699998518998899806755
No 103
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.56 E-value=0.00022 Score=48.15 Aligned_cols=100 Identities=21% Similarity=0.237 Sum_probs=64.1
Q ss_pred EEEECC-CHHHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHH--CCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHH
Q ss_conf 999778-8789999999997799---818999449899999997--7898422798817874389731-68775555441
Q gi|254781039|r 7 IFVIGA-GAFGTALSSVIASRGL---ANVTLLGRKEILMQQLED--TRINAKALPGIKLSPLLNFSSD-HTLLQNADIVL 79 (329)
Q Consensus 7 I~ViGa-Ga~GtAlA~~La~~g~---~~V~l~~r~~~~~~~i~~--~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIi 79 (329)
|+|||| |..|+++|..|..++. .++.|++++++..+.... .|... . ....++..+++ .+++++||+|+
T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~~~~g~a~Dl~~~~~-~----~~~~~v~~~~~~~~~~~daDvVV 75 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVE-P----LADIKVSITDDPYEAFKDADVVI 75 (263)
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCC-C----CCCCEEEECCCHHHHHCCCCEEE
T ss_conf 989877977999999999828999998899995898720879999985452-3----57873997487389837998999
Q ss_pred CCCCH----------------HHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 12217----------------7766655553320356850552375200
Q gi|254781039|r 80 FATSS----------------KGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 80 iavps----------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
++.-. .-++++.+.++++- ++..++.++.-.+
T Consensus 76 itag~~~k~g~~R~dll~~N~~I~~~i~~~i~~~~-p~a~iivvtNPvd 123 (263)
T cd00650 76 ITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVD 123 (263)
T ss_pred EECCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCC-CCCEEEECCCCHH
T ss_conf 90577889998765664032889999988887329-9836997389489
No 104
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=97.55 E-value=0.00015 Score=49.32 Aligned_cols=102 Identities=20% Similarity=0.309 Sum_probs=75.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC---CCCCC--CCCC--------CCCCCEEEEE----
Q ss_conf 77999778878999999999779981899944989999999778---98422--7988--------1787438973----
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR---INAKA--LPGI--------KLSPLLNFSS---- 67 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~---~n~~~--lp~i--------~l~~~i~~t~---- 67 (329)
++|.|||+|+.||+.+-.|+..|.++|.+.++|.-....|.+.= +.-.. +|.. .|+++|+++.
T Consensus 22 s~VLiiGaGgLGs~~~~~LA~AGVG~i~i~D~D~V~~SNLqRQ~Lf~e~Dv~~~~pK~e~aa~~l~~LN~~i~v~a~~~~ 101 (210)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAAAGVGTITIVDDDHVDLSNLQRQILFAEEDVGTLRPKVEAAAERLRELNSDIRVTALKER 101 (210)
T ss_pred CCEEEEEECHHHHHHHHHHHHCCCCEEEEEECCEECHHHCHHHHHHCHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 86599972614568999998288837899851677010120554303244201315899999999853889689985420
Q ss_pred -----CHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf -----168775555--44112217776665555332035685055237
Q gi|254781039|r 68 -----DHTLLQNAD--IVLFATSSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 68 -----~~~~l~~ad--iIiiavps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
..+.+++.| +|+=|+=+...|..+++.... .++|+|+.+
T Consensus 102 vt~~~~~~~i~~~DPdlVlDc~DNf~tryliNdaC~~--~~~PlI~aa 147 (210)
T TIGR02356 102 VTAENLELLIENVDPDLVLDCTDNFATRYLINDACQA--LGIPLISAA 147 (210)
T ss_pred CCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH--HCCCEEEEE
T ss_conf 2779999996238996896156687788999999998--479869998
No 105
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=97.53 E-value=0.00016 Score=49.15 Aligned_cols=121 Identities=19% Similarity=0.254 Sum_probs=78.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHCCCCCCCCC-CCC-CCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 7799977887899999999977998-18999449899999997789842279-881-78743897316877555544112
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLA-NVTLLGRKEILMQQLEDTRINAKALP-GIK-LSPLLNFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~-~V~l~~r~~~~~~~i~~~~~n~~~lp-~i~-l~~~i~~t~~~~~l~~adiIiia 81 (329)
+||+|||||..|+.-|+.||+|-.. +|.|.+..+ ++.+-+.+-=-=|-. -+. |.-.+.=|++.+...++|+|++.
T Consensus 2 kKisvIGAGfvGaTTAf~lA~KeLard~VLlDiPq--vEg~pqGKALDmyEasPv~gFD~kvTGtnnYaDTAnSDivViT 79 (308)
T TIGR01763 2 KKISVIGAGFVGATTAFLLAEKELARDVVLLDIPQ--VEGVPQGKALDMYEASPVEGFDVKVTGTNNYADTANSDIVVIT 79 (308)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECC--CCCCCCCCHHHHHHCCCCCCCCCEEECCCCCHHHCCCCEEEEC
T ss_conf 55899706861258999998674067168985055--5868886332211027766311236257870021188379981
Q ss_pred C----------------CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHH--HHHCCCE
Q ss_conf 2----------------17776665555332035685055237520002585431012332--1001210
Q gi|254781039|r 82 T----------------SSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKV--LPSHSIS 133 (329)
Q Consensus 82 v----------------ps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~--~~~~~~~ 133 (329)
- ...-+|++..++.+|- +|..||.++.-++. ++.+..+. +|++++-
T Consensus 80 aG~pRKPGMsReDL~s~Na~I~R~v~~~i~~~S-pn~iIvvv~NPlDa-----MTy~a~~~SGfPKERVI 143 (308)
T TIGR01763 80 AGLPRKPGMSREDLVSVNADIVREVTSRIVEYS-PNAIIVVVSNPLDA-----MTYVAYKKSGFPKERVI 143 (308)
T ss_pred CCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCC-CCCEEEEECCCHHH-----HHHHHHHHCCCCCCCEE
T ss_conf 678875478878998613346899999997318-99689997180578-----99999971589742132
No 106
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.52 E-value=0.00018 Score=48.83 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=58.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
-+++.|||+|.||.-.|.+|...|..+|++..|+.+.+..+.+.-. .. -+.+....+.+.++|+||.++.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-~~---------~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-AE---------AVALEELLEALAEADVVISSTS 247 (414)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHC-CE---------EECHHHHHHHHHHCCEEEEECC
T ss_conf 6769998651899999999985898779997587899999999838-70---------2218778876520799999069
Q ss_pred HHH
Q ss_conf 777
Q gi|254781039|r 84 SKG 86 (329)
Q Consensus 84 s~~ 86 (329)
+..
T Consensus 248 a~~ 250 (414)
T COG0373 248 APH 250 (414)
T ss_pred CCC
T ss_conf 985
No 107
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=97.52 E-value=0.00016 Score=49.04 Aligned_cols=83 Identities=20% Similarity=0.318 Sum_probs=57.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE---CHHHHHHHHHHHCCC
Q ss_conf 99977887899999999977998-18999449899999997789842279881787438973---168775555441122
Q gi|254781039|r 7 IFVIGAGAFGTALSSVIASRGLA-NVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS---DHTLLQNADIVLFAT 82 (329)
Q Consensus 7 I~ViGaGa~GtAlA~~La~~g~~-~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~---~~~~l~~adiIiiav 82 (329)
|.|||+|.+|++++..|++++.. +|++.+|+.+.++.+.....+.+.. .. .+.+.+ ..+.++++|+|+-++
T Consensus 1 IlvlGaG~vG~~~~~~L~~~~~~~~i~vad~~~~~~~~~~~~~~~~~~~-~~----~~d~~~~~~l~~~~~~~diVv~~~ 75 (384)
T pfam03435 1 VLIIGAGGVGQGVAPLLARHGDVDEITVADRSLEKAQALAAPKLGLRFI-AI----AVDADNYEALAALLKEGDLVINLA 75 (384)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCEE-EE----EECCCCHHHHHHHHHCCCEEEECC
T ss_conf 9898977879999999972899886999989889989877523698538-99----957789999999871289999998
Q ss_pred CHHHHHHHHHHH
Q ss_conf 177766655553
Q gi|254781039|r 83 SSKGYGEALNFY 94 (329)
Q Consensus 83 ps~~~~~~l~~i 94 (329)
|.+....+++..
T Consensus 76 p~~~~~~i~~~c 87 (384)
T pfam03435 76 PPFLSLTVLKAC 87 (384)
T ss_pred CHHHCHHHHHHH
T ss_conf 434169999999
No 108
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.49 E-value=0.00021 Score=48.39 Aligned_cols=74 Identities=23% Similarity=0.265 Sum_probs=56.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
-+++.|||+|.||...+.+|.+.|..++++..|..+.++.+...-.+. .. ..+.+..+.+.++|+||.|+.
T Consensus 181 ~~~vlvvGaGem~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~~~~~------~~---~~~~~l~~~l~~aDivisaT~ 251 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA------SA---HYLSELPQLIKKADIIIAAVN 251 (414)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCC------CC---CCHHHHHHHHHHCCEEEEECC
T ss_conf 283899668647899999999769987999457567799999970888------50---169999999863887998169
Q ss_pred HHH
Q ss_conf 777
Q gi|254781039|r 84 SKG 86 (329)
Q Consensus 84 s~~ 86 (329)
+..
T Consensus 252 a~~ 254 (414)
T PRK13940 252 VLE 254 (414)
T ss_pred CCH
T ss_conf 824
No 109
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.49 E-value=0.00028 Score=47.56 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=86.0
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH
Q ss_conf 98887799977-88789999999997799818999449899999997789842279881787438973168775555441
Q gi|254781039|r 1 MKNYSTIFVIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVL 79 (329)
Q Consensus 1 M~~~~kI~ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIi 79 (329)
|.-...|+||| +|..|..+|..|-++. +..+.++++.. |.+ .+..++++.+|+||
T Consensus 1 ~~~~piV~iiG~~~~~G~w~a~flr~~~--~~~vig~dp~~-------------------~~s---~D~~~l~~~aDIVI 56 (373)
T PRK08818 1 MIAQPVVGIVGIAGAYGRWLAQFLRTRM--QLEVIGYDPAD-------------------PGS---LDPATLLARADVLV 56 (373)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCC-------------------CCC---CCHHHHHHCCCEEE
T ss_conf 9878638996266326589999987436--61788548877-------------------566---69889862389899
Q ss_pred CCCCHHHHHHHHHH---HHHHCCCCCCEEECC--CCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 12217776665555---332035685055237--5200025854310123321001210012888178998765321246
Q gi|254781039|r 80 FATSSKGYGEALNF---YSNWLKESAEIIICS--KGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVIL 154 (329)
Q Consensus 80 iavps~~~~~~l~~---i~~~l~~~~~ii~~s--KGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~i 154 (329)
++||.....+++++ +++..+.+..+..+| |.. + -+.+.+.-.+.+|.+|.. ||--...+ +++ .-++.
T Consensus 57 isVPI~~T~~vI~E~~~~Ap~~~~gsLLmDVTSIKe~-P--v~AM~~s~~eVv~~HPMf---GpP~sPsL-~gq-VVIlt 128 (373)
T PRK08818 57 FSAPIRHTAALIERYVALAGARAAGQLWLDVTSIKQA-P--VAAMLASQAEVVGLHPMT---APPKSPTL-KGR-VMVVC 128 (373)
T ss_pred EECCHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHH-H--HHHHHHCCCCEECCCCCC---CCCCCCCC-CCE-EEEEE
T ss_conf 9778032388998877416556788568850334068-8--999864444222378877---89998640-441-89970
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 773178999999753411138997
Q gi|254781039|r 155 SSKNIDISRRLSKILTTDSFRVYC 178 (329)
Q Consensus 155 a~~d~~~~~~i~~~~~~~~~~~~~ 178 (329)
-+.+......+++++...--++..
T Consensus 129 p~~~~~~~~~v~kl~e~lgAev~~ 152 (373)
T PRK08818 129 EARLQHWSPWVDSLCSALQAECVY 152 (373)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 576552359999999753877999
No 110
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.49 E-value=0.00073 Score=44.83 Aligned_cols=124 Identities=18% Similarity=0.113 Sum_probs=72.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 87799977887899999999977--9981899944989999999778984227988178743897316877555544112
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASR--GLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~--g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiia 81 (329)
-.||++||.|+.|..++..|.+. +..-+.+|+|+++....+.+.-. ......+..+....+|+|+-|
T Consensus 6 kmrVgliG~GaIG~~va~~l~~g~~~~~l~~V~~r~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~DlVVE~ 74 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLR-----------RPPPVVPLDQLATHADIVVEA 74 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCC-----------CCCCCCCHHHHHHCCCEEEEC
T ss_conf 677999886789999999997589981899999288788899987358-----------987407889960189999989
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHH
Q ss_conf 217776665555332035685055237520002585431012332100121001288817899
Q gi|254781039|r 82 TSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDI 144 (329)
Q Consensus 82 vps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Ei 144 (329)
-+.+.+++....+.. .+..++.++=|=-.+. ..+-+..++ ...++.+-||.--.-|.
T Consensus 75 A~~~av~~~~~~~L~---~G~dlvv~SvGALad~-~~l~~~A~~--~g~~i~ipsGAigGlD~ 131 (271)
T PRK13302 75 APASVLRAIVEPVLA---AGKKAIVLSVGALLRN-EDLIDLARQ--NGGQIIVPTGALLGLDA 131 (271)
T ss_pred CCHHHHHHHHHHHHH---CCCCEEEECHHHHCCC-HHHHHHHHH--CCCEEEEECCHHHHHHH
T ss_conf 898999999999997---5997899755795692-999999996--69859980703434789
No 111
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.48 E-value=0.0008 Score=44.56 Aligned_cols=88 Identities=13% Similarity=0.197 Sum_probs=63.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
++++|+|.|+.|+++|..+.--| .+|..|.|.... .. ......+..+.++.||+|.+.+|.
T Consensus 123 ktvGIiG~G~IG~~vA~~~~afg-~~V~~~~r~~~~------~~------------~~~~~~~~~ell~~sDivslh~Pl 183 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFG-MNIYAYTRSYVN------DG------------ISSIYMEPEDIMKKSDFVLISLPL 183 (303)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCC------CC------------CCEEECCHHHHHHHCCEEEEECCC
T ss_conf 88999897656999999999779-889998985322------45------------745526899999759999992578
Q ss_pred -HHHHHHH-HHHHHHCCCCCCEEECCCCC
Q ss_conf -7766655-55332035685055237520
Q gi|254781039|r 85 -KGYGEAL-NFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 85 -~~~~~~l-~~i~~~l~~~~~ii~~sKGi 111 (329)
...+..+ ++.-..++++..+|+++.|=
T Consensus 184 t~~T~~lI~~~~l~~MK~~a~lIN~aRG~ 212 (303)
T PRK06436 184 TDETRGMINSKMLSLFRKGLAIINVARAD 212 (303)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 65567776899998569997899927865
No 112
>KOG2380 consensus
Probab=97.47 E-value=0.00049 Score=45.95 Aligned_cols=230 Identities=21% Similarity=0.248 Sum_probs=129.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHH
Q ss_conf 9888779997788789999999997799818999449899999997789842279881787438973168-775555441
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHT-LLQNADIVL 79 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~-~l~~adiIi 79 (329)
|+...+|+|||-|+||.-+|..|.+.| |.|....|.+ .+.+.+.--+.+ ++...+ +-+..|+|+
T Consensus 49 ~k~tl~IaIIGfGnmGqflAetli~aG-h~li~hsRsd--yssaa~~yg~~~------------ft~lhdlcerhpDvvL 113 (480)
T KOG2380 49 WKATLVIAIIGFGNMGQFLAETLIDAG-HGLICHSRSD--YSSAAEKYGSAK------------FTLLHDLCERHPDVVL 113 (480)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHCC-CEEEECCCCH--HHHHHHHHCCCC------------CCCHHHHHHCCCCEEE
T ss_conf 166448999713708899999998648-6267447500--689999741233------------4617778754899799
Q ss_pred CCCCHHHHHHHHHHHHHH-CCCCCCEEEC--CCCCCCCCCCCCCHHHHHHHHHC----CCEECCCCCHHHHHHHHHHHHC
Q ss_conf 122177766655553320-3568505523--75200025854310123321001----2100128881789987653212
Q gi|254781039|r 80 FATSSKGYGEALNFYSNW-LKESAEIIIC--SKGFEYNSGMLLSSYSEKVLPSH----SISVLSGPGFARDIAQGLPVGV 152 (329)
Q Consensus 80 iavps~~~~~~l~~i~~~-l~~~~~ii~~--sKGi~~~t~~~~se~i~~~~~~~----~~~vlsGPs~A~Eia~~~pt~~ 152 (329)
+|+....++.++...-+- ++.+++++-. +|-++ -+.+++.+|.. ..--+-||---.-=-+|.|--.
T Consensus 114 lctsilsiekilatypfqrlrrgtlfvdvlSvKefe-------k~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVy 186 (480)
T KOG2380 114 LCTSILSIEKILATYPFQRLRRGTLFVDVLSVKEFE-------KELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVY 186 (480)
T ss_pred EEEHHHHHHHHHHHCCCHHHCCCEEEEEEEECCHHH-------HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCEEE
T ss_conf 970254099899856803420210674234314047-------8999985843266686447768776887666686599
Q ss_pred -----CCCCCHHHHHHHHHHHHCCCCEEE-E---ECCCCCEEEE----------------------EEHHHHHHHHHHHH
Q ss_conf -----467731789999997534111389-9---7388614444----------------------00025677889975
Q gi|254781039|r 153 -----ILSSKNIDISRRLSKILTTDSFRV-Y---CSDDRIGVQI----------------------GGALKNVIAIASGI 201 (329)
Q Consensus 153 -----~ia~~d~~~~~~i~~~~~~~~~~~-~---~s~D~~GvE~----------------------~galKNv~AIa~Gi 201 (329)
--|..-.+.++.+-++|.....+. | .-.|-+.++- -+.+-|++-+.--|
T Consensus 187 dkvRig~~~~r~ercE~fleIf~cegckmVemS~eeHDkiaAdsQfVTHtagr~lg~aw~~syPintkGyEnlldLseni 266 (480)
T KOG2380 187 DKVRIGYAASRPERCEFFLEIFACEGCKMVEMSYEEHDKIAADSQFVTHTAGRSLGSAWAKSYPINTKGYENLLDLSENI 266 (480)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHH
T ss_conf 97421432246288999999998527707997730133002532687899998877765520861033289999999876
Q ss_pred HHH---HC-----CCCHHHHHHHH--HHHHHHHHHH---------H-HHCCCHHHH--HHCCCCCEEEEEEEC
Q ss_conf 211---00-----38057899999--9899999999---------8-722544553--200232101577644
Q gi|254781039|r 202 LKG---RG-----CGDSARAIVMV--QGLSEIMKLT---------E-AMNGRADTI--LRLSGVGDLILTATS 252 (329)
Q Consensus 202 ~~g---l~-----~g~N~~aal~~--~g~~Em~~l~---------~-~~g~~~~t~--~glaG~GDl~~T~~s 252 (329)
+.. +. ++.|+.-.+-. .++.|..... + .++|....| ++++++-|-.+--++
T Consensus 267 ysdsfhlyyGLfiyNpnAleqleryd~afeelfkelfsrlhqeyrkq~f~ge~fvfgkt~~lllnD~~ld~ms 339 (480)
T KOG2380 267 YSDSFHLYYGLFIYNPNALEQLERYDTAFEELFKELFSRLHQEYRKQLFKGEQFVFGKTGLLLLNDTILDKMS 339 (480)
T ss_pred HCCHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 0540232232354082699999999989999999997547899999886166501034654203640110022
No 113
>PRK05086 malate dehydrogenase; Provisional
Probab=97.44 E-value=0.00082 Score=44.49 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=59.1
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCC--CCEEEEEECCHH-HHHHHHHCCCCCCCCCCCCCCCCEEEEE-CHHHHHHHHHHH
Q ss_conf 77999778-878999999999779--981899944989-9999997789842279881787438973-168775555441
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRG--LANVTLLGRKEI-LMQQLEDTRINAKALPGIKLSPLLNFSS-DHTLLQNADIVL 79 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g--~~~V~l~~r~~~-~~~~i~~~~~n~~~lp~i~l~~~i~~t~-~~~~l~~adiIi 79 (329)
+||+|||| |+.|+++|..|..++ ..++.|++..+. .-+.+.-.|.. ..........+ ..+++++||+|+
T Consensus 1 mKV~IiGA~G~VG~s~A~~l~~~~~~~~el~L~Di~~~~~G~alDL~h~~------~~~~~~~~~~~~~~~~l~~adiVv 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIP------TAVKIKGFSGEDPTPALEGADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCC------CCCCCCEEECCCHHHHHCCCCEEE
T ss_conf 98999989986999999999828987774999758888610565654787------546653461698678717999999
Q ss_pred CCC--CH--------------HHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 122--17--------------7766655553320356850552375200
Q gi|254781039|r 80 FAT--SS--------------KGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 80 iav--ps--------------~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
++- |. .-++++.+.|.++- ++..++.++.-.+
T Consensus 75 itAG~~rkpG~tR~dLl~~Na~I~~~i~~~I~~~~-p~aiiivvsNPvD 122 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNPVN 122 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCHH
T ss_conf 87898998589889999987899999999887208-9718999548327
No 114
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.44 E-value=0.0011 Score=43.75 Aligned_cols=123 Identities=22% Similarity=0.286 Sum_probs=69.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH---------------------HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8877999778878999999999779981899944989---------------------9999997789842279881787
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI---------------------LMQQLEDTRINAKALPGIKLSP 61 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~---------------------~~~~i~~~~~n~~~lp~i~l~~ 61 (329)
+-+||+|||+|.=|.+-|..|+..| |+|++|.+.+. .++.|.+. |+++.-
T Consensus 192 tGKkVAIIGaGPAGLsaAy~L~~~G-h~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~--------GV~~~~ 262 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKG-HDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAM--------GAEFRF 262 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHC--------CCEEEE
T ss_conf 8997999683789999999999779-9069981588889867644863338999999999999971--------985886
Q ss_pred CEEEEEC--H-HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHH--HHHHCCCEECC
Q ss_conf 4389731--6-87755554411221777666555533203568505523752000258543101233--21001210012
Q gi|254781039|r 62 LLNFSSD--H-TLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEK--VLPSHSISVLS 136 (329)
Q Consensus 62 ~i~~t~~--~-~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~--~~~~~~~~vls 136 (329)
|..+..| . +..++.|.||+++=++.-+.. + ++ +.- .+|+.. ...++.++-.. .....+++|+.
T Consensus 263 n~~vG~ditl~~L~~~yDAVflaiGa~~~r~L-----~-ip-Ged----l~gV~~-avdfL~~v~~g~~~~~GkkVvVIG 330 (652)
T PRK12814 263 NTVFGRDITLEELQKEFDAVLLAVGAQKASKM-----G-IP-GEE----LPGVIS-GIDFLRNVALGTALHPGKKVVVIG 330 (652)
T ss_pred EEEECCCCCHHHHHHHCCEEEEEECCCCCCCC-----C-CC-CCC----CCCEEE-HHHHHHHHHCCCCCCCCCCCEEEC
T ss_conf 67947747799998658999997557877447-----9-88-887----877276-899999852698666788524866
Q ss_pred CCCHHHHHHH
Q ss_conf 8881789987
Q gi|254781039|r 137 GPGFARDIAQ 146 (329)
Q Consensus 137 GPs~A~Eia~ 146 (329)
|-+.|.+.|+
T Consensus 331 GGNtAmD~AR 340 (652)
T PRK12814 331 GGNTAIDAAR 340 (652)
T ss_pred CCCHHHHHHH
T ss_conf 8813899999
No 115
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.42 E-value=0.00043 Score=46.28 Aligned_cols=48 Identities=25% Similarity=0.363 Sum_probs=38.7
Q ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHCCCCEEEEEECCH-HHHHHHHHCCC
Q ss_conf 9888779997788789-9999999977998189994498-99999997789
Q gi|254781039|r 1 MKNYSTIFVIGAGAFG-TALSSVIASRGLANVTLLGRKE-ILMQQLEDTRI 49 (329)
Q Consensus 1 M~~~~kI~ViGaGa~G-tAlA~~La~~g~~~V~l~~r~~-~~~~~i~~~~~ 49 (329)
+.+|+||-+||.|-.| ++||..|.+.| ++|+..++.+ ...+.+.+.+.
T Consensus 5 ~~~~k~ih~iGigG~GmsalA~~l~~~G-~~V~gsD~~~~~~~~~L~~~Gi 54 (459)
T PRK00421 5 PRRIKRIHFVGIGGIGMSGLAEVLLNLG-YKVSGSDLKESAVTQRLLELGA 54 (459)
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHCCC
T ss_conf 6567889999866888999999999689-9399988989978999997879
No 116
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.41 E-value=0.00071 Score=44.91 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=65.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
-++++|+|.|..|.++|..+.--| .+|..|.|.+. ....+ ..+ ..+.+..+.++.||+|.+.+|
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fg-m~v~y~~~~~~--~~~~~-~~~------------~~y~~l~ell~~sDii~l~~P 209 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFG-MKVLYYDRSPN--PEAEK-ELG------------ARYVDLDELLAESDIISLHCP 209 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCC-CEEEEECCCCC--HHHHH-HCC------------CEECCHHHHHHHCCEEEEECC
T ss_conf 888899784889999999872179-68998668874--55574-058------------604168999976999999779
Q ss_pred HHH-HHHHH-HHHHHHCCCCCCEEECCCCC
Q ss_conf 777-66655-55332035685055237520
Q gi|254781039|r 84 SKG-YGEAL-NFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 84 s~~-~~~~l-~~i~~~l~~~~~ii~~sKGi 111 (329)
... .+..+ .+....++++..+|+++.|=
T Consensus 210 lt~~T~hLin~~~l~~mk~ga~lVNtaRG~ 239 (324)
T COG1052 210 LTPETRHLINAEELAKMKPGAILVNTARGG 239 (324)
T ss_pred CCHHHHHHCCHHHHHHCCCCEEEEECCCCC
T ss_conf 983766532999997568976999648742
No 117
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.40 E-value=0.0007 Score=44.94 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=55.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
++++|+|-|+.|+.+|..+.--| .+|..|.+.... . .......+..+.+++||+|.+.+|-
T Consensus 146 ktlGIvG~G~IG~~va~~l~~fG-m~V~~~d~~~~~------~------------~~~~~~~~l~ell~~sDivslh~Pl 206 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFG-AEVVYYSTSGKN------K------------NSEYERLSLEELLKTSDIISIHAPL 206 (311)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCC------C------------CCCCEECCHHHHHHHCCEEEEECCC
T ss_conf 88999844748999999999769-989998984312------4------------5781357899998737801453357
Q ss_pred HH-HHHHH-HHHHHHCCCCCCEEECCCC
Q ss_conf 77-66655-5533203568505523752
Q gi|254781039|r 85 KG-YGEAL-NFYSNWLKESAEIIICSKG 110 (329)
Q Consensus 85 ~~-~~~~l-~~i~~~l~~~~~ii~~sKG 110 (329)
.. .+..+ ++....+++++.+|+++.|
T Consensus 207 t~~T~~li~~~~l~~Mk~~a~lIN~aRG 234 (311)
T PRK08410 207 NEKTKNLINYEELKLLKDGAILINVGRG 234 (311)
T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 6222340128999630457559992574
No 118
>pfam07991 IlvN Acetohydroxy acid isomeroreductase, catalytic domain. Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.
Probab=97.38 E-value=0.00061 Score=45.34 Aligned_cols=93 Identities=23% Similarity=0.256 Sum_probs=72.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC
Q ss_conf 877999778878999999999779981899944989-9999997789842279881787438973168775555441122
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI-LMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT 82 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~-~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav 82 (329)
-++|+|||-|+=|-|-|.-|-++|. +|.+=-|... -.+.-.+.+ .+..+..|+.+.+|+|.+.+
T Consensus 4 ~k~iaViGYGsQG~AhAlNLrDSG~-~V~vglr~~s~S~~kA~~dG--------------f~v~~~~eA~~~aDiim~L~ 68 (165)
T pfam07991 4 GKKIAVIGYGSQGHAHALNLRDSGV-NVIVGLRPGSKSWEKAKKDG--------------FEVYTVAEAVKKADVVMILL 68 (165)
T ss_pred CCEEEEEEECCHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHCC--------------CCCCCHHHHHHHCCEEEEEC
T ss_conf 9989999346164888723053499-78999789986799999789--------------70048999986578999837
Q ss_pred CHHHHHHHHH-HHHHHCCCCCCEEECCCCCC
Q ss_conf 1777666555-53320356850552375200
Q gi|254781039|r 83 SSKGYGEALN-FYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 83 ps~~~~~~l~-~i~~~l~~~~~ii~~sKGi~ 112 (329)
|-....++.+ +|.|+++++. .+..+-||.
T Consensus 69 PD~~q~~iy~~~I~p~lk~G~-~L~FaHGFn 98 (165)
T pfam07991 69 PDEVQAEVYEKEIAPNLKEGA-ALAFAHGFN 98 (165)
T ss_pred CCHHHHHHHHHHHHHHCCCCC-EEEECCCCE
T ss_conf 977789999998986578997-799715757
No 119
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=97.38 E-value=0.00052 Score=45.80 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=73.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
+|+.|+|=|.-|.++|..|+-=| .+|.+=.|++.....|-+-+.+|- ......+.+.++|++|=.||+
T Consensus 153 S~v~VlGfGRtG~tiAr~f~aLG-A~V~V~AR~~~dlARI~E~g~~P~-----------~~~~L~~~v~e~DIviNTiPa 220 (288)
T TIGR02853 153 SNVMVLGFGRTGMTIARTFSALG-ARVSVGARSSADLARITEMGLEPV-----------PLNKLEEKVAEIDIVINTIPA 220 (288)
T ss_pred CEEEEECCCCHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHCCCCC-----------CHHHHHHHHCCCCEEEECCCC
T ss_conf 34578844705689999997269-805753178367899999606882-----------716788765000247706763
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 776665555332035685055237
Q gi|254781039|r 85 KGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 85 ~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
--+. +++-..+++++.||.++
T Consensus 221 Lvlt---~~~l~~lp~~AviiDLA 241 (288)
T TIGR02853 221 LVLT---KDVLSKLPKHAVIIDLA 241 (288)
T ss_pred CCCC---HHHHHHCCCCCEEEEEC
T ss_conf 0036---58995268584899732
No 120
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.38 E-value=0.0006 Score=45.36 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=55.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
-++|.|+|+|.-+.|++..|.+.|.+++.++.|+.+..+.+.+.-.+. . ......+..+...++|+||=|+|
T Consensus 19 ~k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~--~------~~~~~~~~~~~~~~~dliIN~tp 90 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL--G------IAIAYLDLEELLAEADLIINTTP 90 (155)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC--C------CCEEECCHHHHHCCCCEEEECCC
T ss_conf 999999867589999999999719982288608999999999985013--6------64010453443156887987677
Q ss_pred HH
Q ss_conf 77
Q gi|254781039|r 84 SK 85 (329)
Q Consensus 84 s~ 85 (329)
..
T Consensus 91 ~G 92 (155)
T cd01065 91 VG 92 (155)
T ss_pred CC
T ss_conf 87
No 121
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.38 E-value=0.00083 Score=44.46 Aligned_cols=33 Identities=3% Similarity=0.128 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 817899876532124677317899999975341
Q gi|254781039|r 139 GFARDIAQGLPVGVILSSKNIDISRRLSKILTT 171 (329)
Q Consensus 139 s~A~Eia~~~pt~~~ia~~d~~~~~~i~~~~~~ 171 (329)
+.+..+++.....+.+.+++.+-++.+++.|..
T Consensus 136 ai~~al~~~g~~~i~i~nR~~~~a~~l~~~~~~ 168 (275)
T PRK00258 136 AVILPLLELGVAEITIVNRTVERAEELAELFGE 168 (275)
T ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 999999976999899995899999999998356
No 122
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.38 E-value=0.00027 Score=47.63 Aligned_cols=189 Identities=21% Similarity=0.296 Sum_probs=114.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
-+||+|||.|+=|.|-|--|-+.|. +|..--|...+.+.-+.- .+ --.....+.+-.+++.+||+|++-+|
T Consensus 37 gKkI~IiG~GsQG~aqaLNlRDSGl-dV~~~LR~~si~~k~~Sw-~~-------A~~~Gf~V~t~eeai~~ADvV~~LtP 107 (489)
T PRK05225 37 GKKIVIVGCGAQGLNQGLNMRDSGL-DISYALRKEAIAEKRASW-RK-------ATENGFKVGTYEELIPQADLVVNLTP 107 (489)
T ss_pred CCEEEEECCCHHHHHHHCCCCCCCC-CEEEEECCCHHHHHHHHH-HH-------HHHCCCCCCCHHHHHHCCCEEEEECC
T ss_conf 8859998036587776524410588-569995553033416679-99-------99779964678997323587887088
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCC-CCCCCCCHHHHHHHHHCCCEE----CCCCCHHH--HHH--HHHHHHCCC
Q ss_conf 777666555533203568505523752000-258543101233210012100----12888178--998--765321246
Q gi|254781039|r 84 SKGYGEALNFYSNWLKESAEIIICSKGFEY-NSGMLLSSYSEKVLPSHSISV----LSGPGFAR--DIA--QGLPVGVIL 154 (329)
Q Consensus 84 s~~~~~~l~~i~~~l~~~~~ii~~sKGi~~-~t~~~~se~i~~~~~~~~~~v----lsGPs~A~--Eia--~~~pt~~~i 154 (329)
-.....+.+.+.|+++++. .+..+-||-. ..+.. |...+.| =-||.+-- |-. .|.||-+.+
T Consensus 108 D~q~~~v~~~i~p~mk~g~-~L~faHGfnI~~~~i~---------~r~di~V~MvAPK~PG~~VR~~y~~G~GvP~LiAv 177 (489)
T PRK05225 108 DKQHSDVVRAVQPLMKQGA-ALGYSHGFNIVEEGEQ---------IRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAV 177 (489)
T ss_pred CCCHHHHHHHHHHHHCCCC-EEEECCCCEEEECCCC---------CCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEE
T ss_conf 5514899999987612677-2111456505531231---------68886389975899964899998627997449997
Q ss_pred C------CCHHHHHHHHHHHHCC-------CCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHH-----------HCCCCH
Q ss_conf 7------7317899999975341-------113899738861444400025677889975211-----------003805
Q gi|254781039|r 155 S------SKNIDISRRLSKILTT-------DSFRVYCSDDRIGVQIGGALKNVIAIASGILKG-----------RGCGDS 210 (329)
Q Consensus 155 a------~~d~~~~~~i~~~~~~-------~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~g-----------l~~g~N 210 (329)
. +.-.+.+..++.-... ..|+-.+-+|+.|-| ++.||+++. .++-.+
T Consensus 178 h~~~d~~g~~~~~a~aya~~~Gg~raGvlettF~~E~etDLfGEQ---------~vLCG~lq~gsil~~~kmi~~g~~~~ 248 (489)
T PRK05225 178 HPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQ---------TILCGMLQAGSLLCFDKLVADGTDPA 248 (489)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHCCH---------HHHHHHHCCHHHHHHHHHHHHCCCHH
T ss_conf 013598753899999999851897555363106877664321005---------55430011015887888987266715
Q ss_pred HHHHHHHHHH
Q ss_conf 7899999989
Q gi|254781039|r 211 ARAIVMVQGL 220 (329)
Q Consensus 211 ~~aal~~~g~ 220 (329)
..+-|+..|.
T Consensus 249 ya~kliq~gw 258 (489)
T PRK05225 249 YAEKLIQFGW 258 (489)
T ss_pred HHHHHHHHHH
T ss_conf 7899998658
No 123
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.37 E-value=0.00096 Score=44.03 Aligned_cols=89 Identities=22% Similarity=0.228 Sum_probs=69.7
Q ss_pred CEEEEECCCH--------------------HHHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 7799977887--------------------89999999997799818999449-----8999999977898422798817
Q gi|254781039|r 5 STIFVIGAGA--------------------FGTALSSVIASRGLANVTLLGRK-----EILMQQLEDTRINAKALPGIKL 59 (329)
Q Consensus 5 ~kI~ViGaGa--------------------~GtAlA~~La~~g~~~V~l~~r~-----~~~~~~i~~~~~n~~~lp~i~l 59 (329)
+||+|+|+|+ -|+.+|.-+++.| |+|.|-..+ ++..+...+-+
T Consensus 1 mkvsVyGaGNQ~LY~e~l~~pek~GGe~PyGGs~MAiefA~AG-HDVvLaePn~~~lsee~w~~VEdAg----------- 68 (341)
T PRK12557 1 MKVTVYGAGNQRLYVNQLNLPEKYGGEPPYGGSRMAIEFAEAG-HDVVLAEPNKSMLSDEQWKRVEDAG----------- 68 (341)
T ss_pred CEEEEECCCCHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHCC-CCEEEECCCCCCCCHHHHHHHHHCC-----------
T ss_conf 9367974764446787708846408999987049999999757-8479735762316989999999749-----------
Q ss_pred CCCEEE-EECHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 874389-73168775555441122177-76665555332035685055237
Q gi|254781039|r 60 SPLLNF-SSDHTLLQNADIVLFATSSK-GYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 60 ~~~i~~-t~~~~~l~~adiIiiavps~-~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
++. ++|.++.+.+++.++-+|-. ..-.+.++|.+++.+++.|.+.|
T Consensus 69 ---Vkvv~dD~eAakh~Ei~ilFTPFGk~T~~Iak~Il~hlpe~AVIcnTC 116 (341)
T PRK12557 69 ---VKVVTDDAEAAKHAEIAVLFTPFGKKTVEIAKEILPHLPEGAVICNTC 116 (341)
T ss_pred ---CEEECCCHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEECCC
T ss_conf ---667336166652675899964764067899998862187787761666
No 124
>PRK06847 hypothetical protein; Provisional
Probab=97.35 E-value=0.00033 Score=47.10 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=34.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 988877999778878999999999779981899944989
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
|+.|+||.|+|+|-=|.++|..|++.| ++|.++.++++
T Consensus 1 m~~~kkV~IVGaG~aGL~lA~~L~~~G-i~v~V~E~~~~ 38 (375)
T PRK06847 1 MGAVKKVLIVGGGIGGMSAAIALRKAG-ISVDLVEIDPE 38 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 989987999996689999999999679-99999908999
No 125
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.35 E-value=0.00057 Score=45.54 Aligned_cols=129 Identities=21% Similarity=0.275 Sum_probs=69.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH---------------------HHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 877999778878999999999779981899944989---------------------99999977898422798817874
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI---------------------LMQQLEDTRINAKALPGIKLSPL 62 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~---------------------~~~~i~~~~~n~~~lp~i~l~~~ 62 (329)
-+||+|||+|-=|.+-|..|++.| |+|++|.+.+. .++.|.+. |+++.-|
T Consensus 310 gkKVAVIGsGPAGLaaA~~Lar~G-~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~l--------GV~f~~n 380 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAG-VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAM--------GIDFHLN 380 (639)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHC--------CCEEEEC
T ss_conf 998999897589999999999759-9069993688889868535874527778999999999864--------9889919
Q ss_pred EEEEEC---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CEEECCCCCCCCCCCCCC-----HHHHHHHHHCCCE
Q ss_conf 389731---6877555544112217776665555332035685-055237520002585431-----0123321001210
Q gi|254781039|r 63 LNFSSD---HTLLQNADIVLFATSSKGYGEALNFYSNWLKESA-EIIICSKGFEYNSGMLLS-----SYSEKVLPSHSIS 133 (329)
Q Consensus 63 i~~t~~---~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~-~ii~~sKGi~~~t~~~~s-----e~i~~~~~~~~~~ 133 (329)
..+..| .+..++.|-||+++=++.-+.. .|. .++. -+.+...=|...+...+. ++-.-..+..+++
T Consensus 381 ~~VGkDit~~eL~~~yDAVflg~Ga~~~~~l--~Ip---Gedl~GV~~AlefL~~~~~~~~g~~~~~~~p~~~~~GK~VV 455 (639)
T PRK12809 381 CEIGRDITFSDLTSEYDAVFIGVGTYGMMRA--DLP---HEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVV 455 (639)
T ss_pred CEECCCCCHHHHHHHCCEEEEEECCCCCCCC--CCC---CCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
T ss_conf 6779868899997317989997367888548--988---77787838769999999986438864445775455677799
Q ss_pred ECCCCCHHHHHHH
Q ss_conf 0128881789987
Q gi|254781039|r 134 VLSGPGFARDIAQ 146 (329)
Q Consensus 134 vlsGPs~A~Eia~ 146 (329)
|+.|-+.|.+.++
T Consensus 456 VIGGGntAmDcaR 468 (639)
T PRK12809 456 VLGGGDTTMDCLR 468 (639)
T ss_pred EECCCCHHHHHHH
T ss_conf 9899821899999
No 126
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00047 Score=46.04 Aligned_cols=91 Identities=21% Similarity=0.189 Sum_probs=63.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 779997788789999999997799818999449-8999999977898422798817874389731687755554411221
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRK-EILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~-~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
++++|||.|+.|+++|..+.--| -+|..|++. +.... .. ..-....+..+.+..||+|.+.+|
T Consensus 143 kTvGIiG~G~IG~~va~~l~afg-m~v~~~d~~~~~~~~-----~~----------~~~~~~~~Ld~lL~~aDiv~lh~P 206 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFG-MKVIGYDPYSPRERA-----GV----------DGVVGVDSLDELLAEADILTLHLP 206 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCC-----CC----------CCCEECCCHHHHHHHCCEEEECCC
T ss_conf 88999898789999999998679-869998898860001-----23----------563110269999876999998389
Q ss_pred HH-HHHHHHH-HHHHHCCCCCCEEECCCCC
Q ss_conf 77-7666555-5332035685055237520
Q gi|254781039|r 84 SK-GYGEALN-FYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 84 s~-~~~~~l~-~i~~~l~~~~~ii~~sKGi 111 (329)
-. ..+.++. +.-..+|+++.+|+++.|=
T Consensus 207 lT~eT~g~i~~~~~a~MK~gailIN~aRG~ 236 (324)
T COG0111 207 LTPETRGLINAEELAKMKPGAILINAARGG 236 (324)
T ss_pred CCCHHHCCCCHHHHHCCCCCCEEEECCCCC
T ss_conf 981222137999994489981999888752
No 127
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=97.33 E-value=0.00061 Score=45.31 Aligned_cols=97 Identities=23% Similarity=0.254 Sum_probs=62.5
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE-CHHHHHHHHHHHCCC
Q ss_conf 799977-8878999999999779981-8999449899999997789842279881787438973-168775555441122
Q gi|254781039|r 6 TIFVIG-AGAFGTALSSVIASRGLAN-VTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS-DHTLLQNADIVLFAT 82 (329)
Q Consensus 6 kI~ViG-aGa~GtAlA~~La~~g~~~-V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~-~~~~l~~adiIiiav 82 (329)
||+|+| +|..|+-|...|.+.-.-+ +.++++++..-+.+...+ |...-..++.+.+ +.+.+.++|++|+|+
T Consensus 1 kvaIiGatGyvG~eLirlL~~hp~~~i~~l~~s~~saG~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Dvvf~al 74 (121)
T pfam01118 1 KVAIVGATGYVGQELLRLLAEHPPLELVALVASSRSAGKKVAFAG------PWLTGGVDLLLEDVDPEDLKDVDIVFFAL 74 (121)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHC------CCCCCCCCCEEEECCHHHHCCCCEEEECC
T ss_conf 999989361999999999971887551378850565896014416------54246666447758977853898999838
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 17776665555332035685055237520
Q gi|254781039|r 83 SSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 83 ps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
|.....++.+++ ++.+..+|.++.-+
T Consensus 75 p~~~s~~~~~~~---~~~g~~VIDlS~df 100 (121)
T pfam01118 75 PAGVSKELAPKL---LEAGAVVIDLSSAF 100 (121)
T ss_pred CHHHHHHHHHHH---HHCCCEEEECCHHH
T ss_conf 768999999998---71598998785675
No 128
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.32 E-value=0.00088 Score=44.30 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=57.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
++++|+|.|+.|+.+|..+.--| .+|..|++.... +...+. .+...+..+.++.||+|.+.+|-
T Consensus 151 ktlGIiG~G~IG~~vak~~~~fg-m~V~~~d~~~~~-~~~~~~--------------~~~~~~l~ell~~sDiIslh~Pl 214 (333)
T PRK13243 151 KTIGIVGFGRIGQAIARRAKGFG-MRILYYSRTRKP-EVEKEL--------------GAEYRPLEDLLRESDFVVLAVPL 214 (333)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCH-HHHHHC--------------CCEEECHHHHHHHCCEEEECCCC
T ss_conf 89999792566899999999769-999998998986-678760--------------96881199974216526642558
Q ss_pred H-HHHHHH-HHHHHHCCCCCCEEECCCC
Q ss_conf 7-766655-5533203568505523752
Q gi|254781039|r 85 K-GYGEAL-NFYSNWLKESAEIIICSKG 110 (329)
Q Consensus 85 ~-~~~~~l-~~i~~~l~~~~~ii~~sKG 110 (329)
. ..+..+ ++.-..++++..+|+++.|
T Consensus 215 t~eT~~li~~~~~~~MK~~a~lIN~aRG 242 (333)
T PRK13243 215 TKETYHMINEERLKLMKKTAILVNIARG 242 (333)
T ss_pred CCCCCCCCCHHHHHHCCCCEEEEECCCC
T ss_conf 6013461369999717998199985884
No 129
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00041 Score=46.46 Aligned_cols=130 Identities=19% Similarity=0.313 Sum_probs=76.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEE-EECHHH-----HHHHHHH
Q ss_conf 7799977887899999999977998189994498999999977898422798817874389-731687-----7555544
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF-SSDHTL-----LQNADIV 78 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~-t~~~~~-----l~~adiI 78 (329)
++|.|+|+|.+|..+|..|++.| |+|.++.+|++.++.......... -+.. .++.+. +.++|.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d~~~~~~~~~~~~~~~---------~v~gd~t~~~~L~~agi~~aD~v 70 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRDEERVEEFLADELDTH---------VVIGDATDEDVLEEAGIDDADAV 70 (225)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCEE---------EEEECCCCHHHHHHCCCCCCCEE
T ss_conf 98999898578899999998789-908999768899998632000449---------99926889899986798638999
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCH
Q ss_conf 11221777666555533203568505523752000258543101233210012100128881789987653212467731
Q gi|254781039|r 79 LFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKN 158 (329)
Q Consensus 79 iiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d 158 (329)
+.++.......++-.+......-..++ +-...|.+.+..-+- -...+-++.
T Consensus 71 va~t~~d~~N~i~~~la~~~~gv~~vi---------------------------ar~~~~~~~~~~~~~--g~~~ii~Pe 121 (225)
T COG0569 71 VAATGNDEVNSVLALLALKEFGVPRVI---------------------------ARARNPEHEKVLEKL--GADVIISPE 121 (225)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEE---------------------------EEECCCHHHHHHHHC--CCCEEECHH
T ss_conf 998088679999999999873998499---------------------------995694167789867--994897558
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 789999997534111
Q gi|254781039|r 159 IDISRRLSKILTTDS 173 (329)
Q Consensus 159 ~~~~~~i~~~~~~~~ 173 (329)
...++++.+.+..+.
T Consensus 122 ~~~~~~l~~~i~~p~ 136 (225)
T COG0569 122 KLAAKRLARLIVTPG 136 (225)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999853886
No 130
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.28 E-value=0.0014 Score=42.97 Aligned_cols=89 Identities=21% Similarity=0.262 Sum_probs=56.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
++++|+|.|..|+++|..+.--| .+|..|++.+.. . +.......+..+.++.||+|.+.+|-
T Consensus 147 ktvGIiG~G~IG~~va~~~~~fg-~~Vi~yD~~~~~------~-----------~~~~~~~~sleell~~sDiIslh~Pl 208 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFG-ATITAYDAYPNK------D-----------LDFLTYKDSVKEAIKDADIISLHVPA 208 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCC------C-----------CCCCEECCCHHHHHHHCCEEEECCCC
T ss_conf 68999675889999999987569-989998998642------2-----------12132327899998759999973768
Q ss_pred HH-HHHHH-HHHHHHCCCCCCEEECCCCC
Q ss_conf 77-66655-55332035685055237520
Q gi|254781039|r 85 KG-YGEAL-NFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 85 ~~-~~~~l-~~i~~~l~~~~~ii~~sKGi 111 (329)
.. .+..+ ++....++++..+|+++.|=
T Consensus 209 t~~T~~lIn~~~l~~MK~~ailINtaRG~ 237 (330)
T PRK12480 209 NKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred CHHHHCCHHHHHHHHCCCCCEEEECCCCC
T ss_conf 53312004899997579997699727863
No 131
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=97.28 E-value=0.0011 Score=43.61 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=60.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHH--HHHHHHC
Q ss_conf 7799977887899999999977--99818999449899999997789842279881787438973168775--5554411
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASR--GLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQ--NADIVLF 80 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~--g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~--~adiIii 80 (329)
.||+|||+|.||......+... +..-+-+++++++..+.+.+.. +++ .+++..+.++ +.|++++
T Consensus 1 iki~iiG~G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~~~-------~~~-----~~~~~~~~l~~~~iD~v~I 68 (120)
T pfam01408 1 LRVGIVGAGKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAESF-------GVP-----AYSDLEELLADPDVDAVSV 68 (120)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH-------CCC-----EECCHHHHHHCCCCCEEEE
T ss_conf 9899990779999999999855999789999829999999999983-------996-----7886999973778898999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 2217776665555332035685055237520
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
++|+....+......+ .+.. |.|-|-+
T Consensus 69 ~tp~~~H~~~~~~~l~---~g~~-v~~EKP~ 95 (120)
T pfam01408 69 ATPPGLHFELALAALE---AGKH-VLVEKPL 95 (120)
T ss_pred CCCHHHHHHHHHHHHH---HCCE-EEEECCC
T ss_conf 0874618999999998---1998-9996898
No 132
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.28 E-value=0.0013 Score=43.30 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=47.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
++|+|+|.|+.|.++|..+.--| .+|..|.+.... .. ....+..+.++.||+|.+.+|-
T Consensus 149 ktvGIiG~G~IG~~va~~~~~fg-~~V~~~~~~~~~--------~~------------~~~~~l~ell~~sDivslh~Pl 207 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFG-MRVLIGQLPGRP--------AR------------PDRLPLDELLPQVDALTLHCPL 207 (317)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCC--------CC------------CCCCCHHHHHHHCCEEEEECCC
T ss_conf 78999786768999999997489-999999288886--------42------------4505799998738856873357
Q ss_pred H-HHHHHH-HHHHHHCCCCCCEEECCCC
Q ss_conf 7-766655-5533203568505523752
Q gi|254781039|r 85 K-GYGEAL-NFYSNWLKESAEIIICSKG 110 (329)
Q Consensus 85 ~-~~~~~l-~~i~~~l~~~~~ii~~sKG 110 (329)
. ..+..+ ++....++++..+|+++.|
T Consensus 208 t~~T~~li~~~~l~~Mk~~a~lIN~aRG 235 (317)
T PRK06487 208 TEHTRHLIGARELALMKPGALLINTARG 235 (317)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 6112115799999853899789970686
No 133
>TIGR00112 proC pyrroline-5-carboxylate reductase; InterPro: IPR000304 Delta 1-pyrroline-5-carboxylate reductase (P5CR) (1.5.1.2 from EC) , is the enzyme that catalyzes the terminal step in the biosynthesis of proline from glutamate, the NAD(P) dependent oxidation of 1-pyrroline-5-carboxylate into proline.; GO: 0004735 pyrroline-5-carboxylate reductase activity, 0006561 proline biosynthetic process.
Probab=97.27 E-value=0.0026 Score=41.25 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=105.2
Q ss_pred EEEECCCHHHHHHHHHHHHCC-C---CEEEEEECC-HHHHHHHHHCCCCCCCCCCCCCCCC-EEE-EEC-HHHHHHHHHH
Q ss_conf 999778878999999999779-9---818999449-8999999977898422798817874-389-731-6877555544
Q gi|254781039|r 7 IFVIGAGAFGTALSSVIASRG-L---ANVTLLGRK-EILMQQLEDTRINAKALPGIKLSPL-LNF-SSD-HTLLQNADIV 78 (329)
Q Consensus 7 I~ViGaGa~GtAlA~~La~~g-~---~~V~l~~r~-~~~~~~i~~~~~n~~~lp~i~l~~~-i~~-t~~-~~~l~~adiI 78 (329)
+.++|+|+||.+++..+...+ . .++.+..+. .+......... . +.. .+. .+...++|++
T Consensus 1 ~~~~g~G~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 67 (274)
T TIGR00112 1 LGFLGAGNMGEALLSGLLKSGAALAPSDILVINRSRPEKLAALAKEL-------------GFVLASSDANEEAVKEADVV 67 (274)
T ss_pred CCEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH-------------HHHHCCCCCHHHHHHHCCEE
T ss_conf 90322533689999998875202331222464255345678877663-------------00101233013444204556
Q ss_pred HCCCCHHHHHHHHHHHHH---HCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHC----CCEECCCCCHHHHHHHHHHHH
Q ss_conf 112217776665555332---0356850552375200025854310123321001----210012888178998765321
Q gi|254781039|r 79 LFATSSKGYGEALNFYSN---WLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSH----SISVLSGPGFARDIAQGLPVG 151 (329)
Q Consensus 79 iiavps~~~~~~l~~i~~---~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~----~~~vlsGPs~A~Eia~~~pt~ 151 (329)
+++++++.++.++..+.. ...+...+++...|+... .+++.++.. .-.+-.-|+.+..+..+....
T Consensus 68 ~l~~kP~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~-------~~~~~~~~~~~~~~~~~r~~pn~~~~~g~~~~~~ 140 (274)
T TIGR00112 68 LLAVKPQDLEEVLSELKGAGLEKTKDKLLISIAAGVTLE-------KLEQLLGGDPPGLRRVVRVMPNTPAKVGAGVTAI 140 (274)
T ss_pred EEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH-------HHHHHHCCCCCCCCCEEEECCCCHHHHHCCHHHH
T ss_conf 785160457899986410110024453367511147589-------9987514555453212333155213442121322
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 24677317899999975341113899738
Q gi|254781039|r 152 VILSSKNIDISRRLSKILTTDSFRVYCSD 180 (329)
Q Consensus 152 ~~ia~~d~~~~~~i~~~~~~~~~~~~~s~ 180 (329)
..-...+.+....+..+|..-....+..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~e 169 (274)
T TIGR00112 141 AANANVSPEDRALVLALFKAVGSVVELPE 169 (274)
T ss_pred HCCCCCCHHHHHHHHHHHHHCCCEEEECH
T ss_conf 11543465679999999984053012005
No 134
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.27 E-value=0.001 Score=43.91 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=62.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHC
Q ss_conf 8877999778878999999999-77998189994498999999977898422798817874389731-687755554411
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIA-SRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLF 80 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La-~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIii 80 (329)
+-+.++|||+|..+-.-...+. -....+|++|+|+++..+.+.+.-. .+.-.+.+.++ .+++.+||+|+.
T Consensus 127 da~~l~iiGtG~QA~~~l~a~~~v~~i~~v~v~~r~~~~~~~f~~~~~--------~~~~~v~~~~~~~eav~~ADIIvt 198 (315)
T PRK06823 127 HVKAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ--------ALGFAVNTTLDAAEVAHAANLIVT 198 (315)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH--------HCCCCEEEECCHHHHHHHCCEEEE
T ss_conf 985699977189999999999871871099994699799999999998--------619907994899999742774798
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 22177766655553320356850552
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIII 106 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~ 106 (329)
|+||.. .+++ ..++++++.|..
T Consensus 199 aT~s~~--Pv~~--~~~lkpG~hi~~ 220 (315)
T PRK06823 199 TTPSRE--PLLQ--AEDIQPGTHITA 220 (315)
T ss_pred EECCCC--CCCC--CCCCCCCCEEEE
T ss_conf 878999--6416--555789967984
No 135
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.00068 Score=45.02 Aligned_cols=147 Identities=16% Similarity=0.119 Sum_probs=90.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC---HHHHHHHHHHHCC
Q ss_conf 7799977887899999999977998189994498999999977898422798817874389731---6877555544112
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD---HTLLQNADIVLFA 81 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~---~~~l~~adiIiia 81 (329)
++|..||-|.||..+...|.+.| |+|..|++|++-++.+...+... +++. ...+...-.|-+-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~yD~n~~av~~~~~~ga~~-------------a~sl~el~~~L~~pr~vWlM 66 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGYDVNQTAVEELKDEGATG-------------AASLDELVAKLSAPRIVWLM 66 (300)
T ss_pred CCCEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHCCCCC-------------CCCHHHHHHHCCCCCEEEEE
T ss_conf 90115400052699999998389-72899738889999998657754-------------36799999746987479997
Q ss_pred CCHH-HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 2177-766655553320356850552375200025854310123321001210012888178998765321246773178
Q gi|254781039|r 82 TSSK-GYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNID 160 (329)
Q Consensus 82 vps~-~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~~ 160 (329)
||.. -...+++++++.+.+.-.+|.--.--..++.+.--++.++-+.-..+..=.|+-=| ..=-++.+++ +.+
T Consensus 67 vPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~-----~~G~~lMiGG-~~~ 140 (300)
T COG1023 67 VPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGA-----ERGYCLMIGG-DEE 140 (300)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHH-----HCCCEEEECC-CHH
T ss_conf 3377736899999885367888898788632577899999887659717834677772255-----3572388538-689
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999975341
Q gi|254781039|r 161 ISRRLSKILTT 171 (329)
Q Consensus 161 ~~~~i~~~~~~ 171 (329)
..+.+..+|.+
T Consensus 141 a~~~~~pif~~ 151 (300)
T COG1023 141 AVERLEPIFKA 151 (300)
T ss_pred HHHHHHHHHHH
T ss_conf 99998899986
No 136
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.25 E-value=0.00036 Score=46.83 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=63.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC-CCC----------------CCCCCCC---CCCE
Q ss_conf 8779997788789999999997799818999449899999997789-842----------------2798817---8743
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRI-NAK----------------ALPGIKL---SPLL 63 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~-n~~----------------~lp~i~l---~~~i 63 (329)
-++|.|+|+|..|+..+..|+..|..++.+++.|.-....+|+.-. +.. .-|++++ +..+
T Consensus 21 ~s~VlivG~GGlGs~~~~~La~~Gvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~K~~~a~~~l~~iNp~i~i~~~~~~i 100 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERL 100 (228)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHEECHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHCC
T ss_conf 49789988778899999999983997589997874556764221023786687895999999998548875303132100
Q ss_pred EEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 89731687755554411221777666555533203568505523
Q gi|254781039|r 64 NFSSDHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIIC 107 (329)
Q Consensus 64 ~~t~~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~ 107 (329)
.-.+..+.++++|+|+-|+-....|..+.+..-. .+.|+|+.
T Consensus 101 ~~~~~~~~~~~~DlVid~~Dn~~~R~~ln~~~~~--~~iP~i~g 142 (228)
T cd00757 101 DAENAEELIAGYDLVLDCTDNFATRYLINDACVK--LGKPLVSG 142 (228)
T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 5756998873798999877998899999999998--39988999
No 137
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.20 E-value=0.0021 Score=41.82 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=61.3
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE-CHHHH-HHHHHHHC
Q ss_conf 877999778-8789999999997799818999449899999997789842279881787438973-16877-55554411
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS-DHTLL-QNADIVLF 80 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~-~~~~l-~~adiIii 80 (329)
|.||+|+|| |.-|.-|-..|.+.-.-++.....+...-+.+.+.+ |.++-...+.+.. +.+.+ .++|++|+
T Consensus 1 m~kVaIvGAtG~vG~eli~lL~~hp~~ei~~las~~saGk~i~~~~------p~l~~~~~~~~~~~~~~~~~~~~Divf~ 74 (345)
T PRK00436 1 MIKVAIVGASGYTGGELLRLLLNHPEVEIVYLTSRSSAGKPLSDLH------PHLRGLVDLVLEPLDPEEIAAGADVVFL 74 (345)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHC------CCCCCCCCCEEEECCHHHHCCCCCEEEE
T ss_conf 9199998966188999999998099867999975786897377858------1103777874764998894269999998
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 2217776665555332035685055237520
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
|+|+..-.++...+. +.+..+|.++--+
T Consensus 75 alp~~~S~~~~~~~~---~~g~~VID~Ssdf 102 (345)
T PRK00436 75 ALPHGVSMELAPQLL---EAGVKVIDLSADF 102 (345)
T ss_pred CCCHHHHHHHHHHHH---HCCCEEEECCHHH
T ss_conf 898389999999998---6698799897012
No 138
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.19 E-value=0.00089 Score=44.27 Aligned_cols=89 Identities=22% Similarity=0.221 Sum_probs=62.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
-++++|||.|+.|+.+|..+..-| .+|..|+...+. ... ...+.+..+.++.||+|.+-+|
T Consensus 116 gktvGIIG~G~IG~~va~~l~afG-~~vl~~DP~~~~----~~~--------------~~~~~sleell~~sDiIslHvP 176 (379)
T PRK00257 116 ERTYGIVGVGHVGGRLVRVLRGLG-WKVLVCDPPRQE----AEG--------------DGDFVSLERILEECDIISLHTP 176 (379)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCHHHH----HHC--------------CCCEECHHHHHHHCCEEEEECC
T ss_conf 987999771679999999999779-989997845766----433--------------8603349999874999999257
Q ss_pred HHH-----HHHHH-HHHHHHCCCCCCEEECCCCC
Q ss_conf 777-----66655-55332035685055237520
Q gi|254781039|r 84 SKG-----YGEAL-NFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 84 s~~-----~~~~l-~~i~~~l~~~~~ii~~sKGi 111 (329)
-.. .+..+ ++....+++++.+|+++.|=
T Consensus 177 Lt~~g~~~T~~Li~~~~L~~mk~~aiLINtsRG~ 210 (379)
T PRK00257 177 LTKEGEHPTWHLLDEAFLASLRPGAWLINASRGA 210 (379)
T ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCH
T ss_conf 7778875320471999996079980999889730
No 139
>PRK05442 malate dehydrogenase; Provisional
Probab=97.19 E-value=0.0011 Score=43.75 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=66.2
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCC---C-C--EEEEEECCHHH--HHHHH--HCCCCCCCCCCCCCCCCEEEEEC-
Q ss_conf 98887799977-8878999999999779---9-8--18999449899--99999--77898422798817874389731-
Q gi|254781039|r 1 MKNYSTIFVIG-AGAFGTALSSVIASRG---L-A--NVTLLGRKEIL--MQQLE--DTRINAKALPGIKLSPLLNFSSD- 68 (329)
Q Consensus 1 M~~~~kI~ViG-aGa~GtAlA~~La~~g---~-~--~V~l~~r~~~~--~~~i~--~~~~n~~~lp~i~l~~~i~~t~~- 68 (329)
|++..||+|+| +|..|..|+..|+... . . .+.|++..+.. ++... -.+. ..++-.++..+++
T Consensus 1 m~~p~kV~I~GAaG~ig~~l~~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~ameL~d~------a~p~l~~v~~~~~~ 74 (325)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPQAQKALKGVVMELEDC------AFPLLAGVVITDDP 74 (325)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCCEEEEEHHCC------CCCCCCCEEEECCH
T ss_conf 999729999888868889999998661320899846999965777666556677342116------75444876850887
Q ss_pred HHHHHHHHHHHCCC--C--------------HHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 68775555441122--1--------------77766655553320356850552375200
Q gi|254781039|r 69 HTLLQNADIVLFAT--S--------------SKGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 69 ~~~l~~adiIiiav--p--------------s~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
.++++++|++|+.- | ..-+++..+.|.++-+++..++.++.-.+
T Consensus 75 ~~a~~~aDvviitag~prkPGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlVv~NPvd 134 (325)
T PRK05442 75 KVAFKDADVALLVGARPRGPGMERKDLLKANGEIFTAQGKALNEVAARDVKVLVVGNPAN 134 (325)
T ss_pred HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH
T ss_conf 898379988998078679999748999976088999999999865798718999578158
No 140
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase; InterPro: IPR006398 These sequences represent 2-hydroxy-3-oxopropionate reductase (1.1.1.60 from EC), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism , .; GO: 0008679 2-hydroxy-3-oxopropionate reductase activity, 0046487 glyoxylate metabolic process.
Probab=97.18 E-value=0.0033 Score=40.52 Aligned_cols=251 Identities=15% Similarity=0.215 Sum_probs=154.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCHH
Q ss_conf 79997788789999999997799818999449899999997789842279881787438973168775555441122177
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSSK 85 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps~ 85 (329)
|++.||-|=||+-++.-|.+.| |++...+++++.++++-.-+- ..+.+-.+..++||+||+=||..
T Consensus 1 KvgfIGLGIMG~PMs~NL~kAG-yql~v~t~~~e~~d~l~aaGa-------------~~a~ta~~~~e~~Dvi~~MvP~s 66 (291)
T TIGR01505 1 KVGFIGLGIMGKPMSKNLLKAG-YQLVVATLEQEVLDELLAAGA-------------ESAETAKEVVEDADVIVTMVPDS 66 (291)
T ss_pred CEEEEECCCCCCHHHHHHHHCC-CEEEEEECCCHHHHHHHHCCC-------------HHHHHHHHHHHHCCEEEEECCCC
T ss_conf 9045635877865789997549-468883077048999986173-------------22899999997489799843876
Q ss_pred -HHHHHH---HHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf -766655---5533203568505523752000258543101233210012100128881789987653212467731789
Q gi|254781039|r 86 -GYGEAL---NFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNIDI 161 (329)
Q Consensus 86 -~~~~~l---~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~~~ 161 (329)
.+++++ +-+-+.-++.+.+|.-| -|.|-+-+. +.+.++..-+-+|==|--=-|.-...-|--+..+-|.-.
T Consensus 67 PqVeeva~GenGi~e~ak~G~~lvDMS-SI~P~~s~~----~a~a~k~kGid~LDAPVSGGE~gAiegtLSiMVGGd~A~ 141 (291)
T TIGR01505 67 PQVEEVAFGENGILEAAKKGKVLVDMS-SIAPLESKE----LAKAVKEKGIDVLDAPVSGGEIGAIEGTLSIMVGGDKAV 141 (291)
T ss_pred CCEEEEEECCCCCCCCCCCCCEEEECC-CCCCHHHHH----HHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEECCCCCH
T ss_conf 970156556875212568887788705-678266899----999999728845207778987100124365876486110
Q ss_pred HHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 9999975341113899738861444400025677889975211--00380578999999899999999872254455320
Q gi|254781039|r 162 SRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKG--RGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILR 239 (329)
Q Consensus 162 ~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~g--l~~g~N~~aal~~~g~~Em~~l~~~~g~~~~t~~g 239 (329)
.+++..+|.-=-=.+...=.. =+| .+.-+--.-||=-.++.|--.|.++-|.+|..++.
T Consensus 142 Fd~~kpL~ealgk~ivl~G~~-------------------G~Gqt~K~ANQ~IVAlNI~A~sEAl~fa~KaGvdp~~v~q 202 (291)
T TIGR01505 142 FDKVKPLLEALGKSIVLVGEN-------------------GDGQTVKVANQVIVALNIEAVSEALVFAEKAGVDPKLVLQ 202 (291)
T ss_pred HHHHHHHHHHHCCCEEEECCC-------------------CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 676669999726958987888-------------------9974040544788888699999999998752889999999
Q ss_pred -----CCCCCEEEEEEEC--CCCCHHHHHHHHHCCCCCCHHCCCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -----0232101577644--775300678775089070257296003199999999999982898715999999980
Q gi|254781039|r 240 -----LSGVGDLILTATS--EQSRNFCFGIALGRGEKQNPDQIQLVEGAIAVSCVINISKKMGLKLPIFQAISDVMM 309 (329)
Q Consensus 240 -----laG~GDl~~T~~s--~~SRN~~~G~~lg~g~~~~~~~~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~il~ 309 (329)
|||- -+|+.-. -..|||.=|.++.-..+- +..+.+-++..+.++|++-++.++++
T Consensus 203 al~GGlAgS--tvL~~k~~~~~~R~FkPGFrIdLH~KD-------------l~~ald~a~~vga~LP~tA~v~el~~ 264 (291)
T TIGR01505 203 ALRGGLAGS--TVLEVKKERVLDRDFKPGFRIDLHQKD-------------LALALDAAKAVGAALPVTAVVAELVA 264 (291)
T ss_pred HHCCCCCCH--HHHHHCCCCCCCCCCCCCCEEHHHHHH-------------HHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 861865010--233112632125788798530531655-------------89999998998863671689999999
No 141
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.005 Score=39.38 Aligned_cols=297 Identities=16% Similarity=0.139 Sum_probs=159.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH----HHHHHHHHCCCCCCCCCCC-----CCCCCEEE---EEC
Q ss_conf 98887799977887899999999977998189994498----9999999778984227988-----17874389---731
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE----ILMQQLEDTRINAKALPGI-----KLSPLLNF---SSD 68 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~----~~~~~i~~~~~n~~~lp~i-----~l~~~i~~---t~~ 68 (329)
|.+|.++.++|+|.-..-+|..+...|....-+++|.. ...+.++++.. -++.+. .+..+..+ ..+
T Consensus 1 m~~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~q--l~l~~q~eahr~leg~~~id~~~kd 78 (431)
T COG4408 1 MHNMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQ--LYLQGQGEAHRQLEGSVTIDCYIKD 78 (431)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCE--EEEEECCHHHHHHCCCEEHHHHHHH
T ss_conf 97653235760571778999999860571540357987306789999824985--9997266888864176555288741
Q ss_pred H-HHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCC--CEEECCCCCCCCCCCCCCHHHHHHH------------HHCCC
Q ss_conf 6-8775555441122177766655553320-35685--0552375200025854310123321------------00121
Q gi|254781039|r 69 H-TLLQNADIVLFATSSKGYGEALNFYSNW-LKESA--EIIICSKGFEYNSGMLLSSYSEKVL------------PSHSI 132 (329)
Q Consensus 69 ~-~~l~~adiIiiavps~~~~~~l~~i~~~-l~~~~--~ii~~sKGi~~~t~~~~se~i~~~~------------~~~~~ 132 (329)
. ++..+.+-+|+|||....-+++++|.-- ++.-+ ++||.+=| ++.++.....+.- ...++
T Consensus 79 ~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfG----sn~lv~~~mnk~~~daeViS~SsY~~dTk~ 154 (431)
T COG4408 79 LAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFG----SNLLVQNLMNKAGRDAEVISLSSYYADTKY 154 (431)
T ss_pred HHHHHCHHHEEEEEEECHHHHHHHHCCCHHHHCCCCEEEEECCCCC----CCHHHHHHHHHHCCCCEEEEEEHHCCCCEE
T ss_conf 9875140446888951088999996389868515547999624456----337999987660898069975011154134
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEH--------HHHHHHHHHHHHHH
Q ss_conf 0012888178998765321246773178999999753411138997388614444000--------25677889975211
Q gi|254781039|r 133 SVLSGPGFARDIAQGLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGA--------LKNVIAIASGILKG 204 (329)
Q Consensus 133 ~vlsGPs~A~Eia~~~pt~~~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~ga--------lKNv~AIa~Gi~~g 204 (329)
.--.-|+.|---+-++--.+----.|...++.++++|....+.+.+-.-+...|--.. +-|=+++.+=+ .+
T Consensus 155 id~~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif-~~ 233 (431)
T COG4408 155 IDAEQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIF-YP 233 (431)
T ss_pred ECCCCCCHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCEEECCCCHHHHHHHHHHH-CC
T ss_conf 42558525889987672660367899718899999998659725873784655304631121684021256799885-77
Q ss_pred H----------CCCCHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCHHHHH-----------
Q ss_conf 0----------0380578999--9998999999998722544553200232101577644775300678-----------
Q gi|254781039|r 205 R----------GCGDSARAIV--MVQGLSEIMKLTEAMNGRADTILRLSGVGDLILTATSEQSRNFCFG----------- 261 (329)
Q Consensus 205 l----------~~g~N~~aal--~~~g~~Em~~l~~~~g~~~~t~~glaG~GDl~~T~~s~~SRN~~~G----------- 261 (329)
. --|.=|.+++ +.+--.||+++...+|.++-..+.+--=-..=+- -+..||..-=+
T Consensus 234 ~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~-~e~l~r~dId~F~~~~~i~QeY 312 (431)
T COG4408 234 EQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVR-AEMLSRRDIDEFPQLPPIEQEY 312 (431)
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC-HHHCCCCCHHHCCCCCHHHHHH
T ss_conf 688730673278999778999999999999999999739974037877415888768-4654700300033378698889
Q ss_pred -------HHHHCCCCCCHHC-------------------------CCEECHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf -------7750890702572-------------------------9600319999999999998289871599999
Q gi|254781039|r 262 -------IALGRGEKQNPDQ-------------------------IQLVEGAIAVSCVINISKKMGLKLPIFQAIS 305 (329)
Q Consensus 262 -------~~lg~g~~~~~~~-------------------------~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~ 305 (329)
-.|..-.+.-+++ ..-.|-++-++.+..++...++.||-.+.+-
T Consensus 313 lLfVRYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~l 388 (431)
T COG4408 313 LLFVRYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLL 388 (431)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9999877774188898233675411114510355546655334788868989999999999986087883299999
No 142
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=97.17 E-value=0.00042 Score=46.41 Aligned_cols=105 Identities=24% Similarity=0.393 Sum_probs=61.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC-CCCCC--CC--------CCCCCCEEEE-------
Q ss_conf 779997788789999999997799818999449899999997789-84227--98--------8178743897-------
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRI-NAKAL--PG--------IKLSPLLNFS------- 66 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~-n~~~l--p~--------i~l~~~i~~t------- 66 (329)
+||.|+|+|..|+.++..|+..|..++++++.|.-....+++.-. +.... +. ..+++.+++.
T Consensus 2 skVlivG~GglG~~~~~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~ 81 (134)
T pfam00899 2 SRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAKERLRAINPDVEVEAYPERLT 81 (134)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEECCHHHCCCEEHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 88999898889999999999938974999989567632227224233646688107999999997789958999925679
Q ss_pred -EC-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCC-CC
Q ss_conf -31-68775555441122177766655553320356850552375-20
Q gi|254781039|r 67 -SD-HTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSK-GF 111 (329)
Q Consensus 67 -~~-~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sK-Gi 111 (329)
++ .+.++++|+|+.|+.+...+..+.+..- +.+.|+|...- |+
T Consensus 82 ~~~~~~~~~~~DvVi~~~Dn~~~r~~ln~~c~--~~~ip~i~~~~~g~ 127 (134)
T pfam00899 82 PENLEELLKGADLVVDALDNFAARYLLNDACV--KRGIPLISAGALGF 127 (134)
T ss_pred HHHHHHCCCCCCEEEECCCCHHHHHHHHHHHH--HCCCCEEEEECCCC
T ss_conf 77876426448899999899999999999999--85998999554678
No 143
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.16 E-value=0.0016 Score=42.66 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=55.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEE---EECCHHHHHHHHHCCCCCCCCCCCCCCCCEE-EEECHHHHHHHHHHH
Q ss_conf 877999778878999999999779981899---9449899999997789842279881787438-973168775555441
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTL---LGRKEILMQQLEDTRINAKALPGIKLSPLLN-FSSDHTLLQNADIVL 79 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l---~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~-~t~~~~~l~~adiIi 79 (329)
|+||+|||.|++|..++..|.+.....+.. |.|+.+..+.... .+.. .++..+..+++|+|+
T Consensus 1 MmrVgiiG~GaIG~~va~~l~~~~~~~~~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~~~DlVV 66 (265)
T PRK13303 1 MMKVAMIGFGAIAAAVYELLEHDPRLRVDWVIVPEHSVDAVRRALG--------------RAVQVVSSVDALAQRPDLVV 66 (265)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHC--------------CCCCCCCCHHHHHHCCCEEE
T ss_conf 9299998546899999999844997279999946852677875304--------------58864479889823799999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 1221777666555533203568505523752
Q gi|254781039|r 80 FATSSKGYGEALNFYSNWLKESAEIIICSKG 110 (329)
Q Consensus 80 iavps~~~~~~l~~i~~~l~~~~~ii~~sKG 110 (329)
-|-+...+++....+.. .+..++..|=|
T Consensus 67 E~A~~~av~~~~~~~L~---~g~dl~v~Svg 94 (265)
T PRK13303 67 ECAGHAALKEHVVPILK---AGIDCAVASVG 94 (265)
T ss_pred ECCCHHHHHHHHHHHHH---CCCCEEEECCH
T ss_conf 89888999999999997---29988998815
No 144
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.16 E-value=0.0028 Score=41.03 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=69.8
Q ss_pred CCCEEEEECCCHHHHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE-CHHHHHHHHHHHC
Q ss_conf 887799977887899999999-97799818999449899999997789842279881787438973-1687755554411
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVI-ASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS-DHTLLQNADIVLF 80 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~L-a~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~-~~~~l~~adiIii 80 (329)
+-+.++|||+|.-+-..+..+ +-.+..+|++|+|+++..+.+.+.-.. +++ .+...+ ..+++++||+|+-
T Consensus 128 ds~~l~iIGtG~QA~~Q~~A~~~vr~i~~V~v~~r~~~~a~~~a~~l~~----~g~----~v~~~~s~~eAv~~ADIIvT 199 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG----PGL----RIVRCRSVAEAVEGADIITT 199 (346)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----CCC----EEEEECCHHHHHHCCCEEEE
T ss_conf 9876999747088999999999858986899982887999999999872----698----08994999999721988887
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 221777666555533203568505523752000258543101233
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEK 125 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~ 125 (329)
|+++..-..++. ..++++++ -|++.-+..++...+.++++.+
T Consensus 200 aT~s~~~~Pil~--~~~v~pGt-HInaVGad~Pgk~ELd~~ll~r 241 (346)
T PRK07589 200 VTADKANATILT--PDMIEPGM-HINAVGGDCPGKTELHADILRR 241 (346)
T ss_pred ECCCCCCCCCCC--HHHCCCCC-EEEEECCCCCCCCCCCHHHHHH
T ss_conf 114778886023--87759995-7985279999853079999951
No 145
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.15 E-value=0.00042 Score=46.40 Aligned_cols=102 Identities=18% Similarity=0.280 Sum_probs=61.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCC--CC--------CCCCCCEEEE-------E-
Q ss_conf 7999778878999999999779981899944989999999778984227--98--------8178743897-------3-
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKAL--PG--------IKLSPLLNFS-------S- 67 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~l--p~--------i~l~~~i~~t-------~- 67 (329)
||.|+|+|..|+..|..|+..|.-+++|++.|.-....+++.-...... |. .++++.+++. .
T Consensus 1 kV~IvG~GGLG~~~a~~La~aGvg~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~i~i~~~~~~l~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 98998767889999999998189739999899466644301324777479749999999999879798899991444999
Q ss_pred -CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf -16877555544112217776665555332035685055237
Q gi|254781039|r 68 -DHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 68 -~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
..+.++++|+|+=|+=....|..+.+-.-. ..+.++|+.+
T Consensus 81 n~~~l~~~~D~ViD~~Dn~~tr~~l~~~~~~-~~~~plv~as 121 (174)
T cd01487 81 NLEGLFGDCDIVVEAFDNAETKAMLAESLLG-NKNKPVVCAS 121 (174)
T ss_pred HHHHHHHCCCEEEECCCCHHHHHHHHHHHHH-HCCCCEEEEE
T ss_conf 9999983799999999998999999999999-8799599997
No 146
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.14 E-value=0.0023 Score=41.55 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=66.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 8877999778878999999999-779981899944989999999778984227988178743897316877555544112
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIA-SRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La-~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiia 81 (329)
+-++++|||+|.-+-.-+..++ -...++|++|+|+++..+.+.+.... +...+...+..++++++|+|+.|
T Consensus 124 ~~~~l~iiGaG~QA~~~~~a~~~v~~~~~V~v~~r~~~~a~~~~~~~~~--------~~~~~~~~~~e~av~~aDiI~ta 195 (304)
T PRK07340 124 APRDLLLIGTGVQAAHHLEALAALLPVRRVWVRGRTAASAAAFCAAARA--------LGPTLEPLDGDAIPPAVDVVVTV 195 (304)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHC--------CCCCEEECCHHHHHHHCCEEEEE
T ss_conf 8751799734799999999999859974899987998999999999860--------09917976899998428989994
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHH
Q ss_conf 217776665555332035685055237520002585431012
Q gi|254781039|r 82 TSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYS 123 (329)
Q Consensus 82 vps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i 123 (329)
+||..= ++ ..++++++. |+..-...++...+..+++
T Consensus 196 T~S~~P--v~---~~~~~~g~h-I~aiGs~~p~~~Eld~~l~ 231 (304)
T PRK07340 196 TTSRTP--VY---PEAARAGRL-VVGVGAFTPDMAELAPRTV 231 (304)
T ss_pred CCCCCC--CC---CCCCCCCEE-EECCCCCCCCCEECCHHHH
T ss_conf 189976--44---655799818-9413789998435699999
No 147
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.14 E-value=0.00042 Score=46.37 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=68.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC-----CCCCCCC--------CCCCCEEEE----
Q ss_conf 87799977887899999999977998189994498999999977898-----4227988--------178743897----
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRIN-----AKALPGI--------KLSPLLNFS---- 66 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n-----~~~lp~i--------~l~~~i~~t---- 66 (329)
-++|.|+|+|..|+.+|..|+..|..++.|.++|.-....+++.-.. ..+.|.. ++++.+++.
T Consensus 24 ~s~VlIVGaGGLGs~~a~~La~aGVG~l~ivD~D~Ve~SNL~RQ~L~~~~Dig~~k~Ka~aA~~~L~~iNp~v~I~~~~~ 103 (337)
T PRK12475 24 EKHVLIIGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQYKPKAIAAAEHLRKINSEVEIVPVVT 103 (337)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEHH
T ss_conf 39699997777789999999982898699984998314467453002221215574889999999984499974475131
Q ss_pred -----ECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf -----316877555544112217776665555332035685055237
Q gi|254781039|r 67 -----SDHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 67 -----~~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
+..+.++++|+|+=|+-....|..++...- +.+.|+|+.+
T Consensus 104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~--~~~~PlV~ga 148 (337)
T PRK12475 104 DVTVEEMEELIKEVDLIIDATDNFDTRLLINDISQ--KYNIPWIYGG 148 (337)
T ss_pred CCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHH--HHCCCEEEEE
T ss_conf 19979999998618899988889999999999999--9699989988
No 148
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=97.14 E-value=0.0006 Score=45.37 Aligned_cols=103 Identities=23% Similarity=0.330 Sum_probs=67.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC-----CCCCCCC--------CCCCCEEEE----
Q ss_conf 87799977887899999999977998189994498999999977898-----4227988--------178743897----
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRIN-----AKALPGI--------KLSPLLNFS---- 66 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n-----~~~lp~i--------~l~~~i~~t---- 66 (329)
-++|.|+|+|..|+.+|..|+..|..++.|+++|.-....+++.-.. .+.+|.. ++++.+++.
T Consensus 24 ~a~VlVvGaGGLGs~~a~~La~aGVG~i~ivD~D~Ve~SNL~RQ~L~~e~Dig~~~pKa~aA~~~L~~iNp~v~I~~~~~ 103 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSEVRVEAIVQ 103 (339)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 29789987777779999999984898299980999246678865065621332263779999999983499860587600
Q ss_pred -----ECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf -----316877555544112217776665555332035685055237
Q gi|254781039|r 67 -----SDHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 67 -----~~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
+..+.++++|+|+=|+-....|..++...- +.+.++|+.+
T Consensus 104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~--~~~~PlV~ga 148 (339)
T PRK07688 104 DVTAEELEELVTNVDVIIDATDNFETRFIVNDAAQ--KYSIPWIYGA 148 (339)
T ss_pred CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH--HHCCCEEEEE
T ss_conf 39989999998518899987889999999999999--9599989998
No 149
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.13 E-value=0.0014 Score=42.93 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=62.0
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CC-C--EEEEEECCHHH--HHH--HHHCCCCCCCCCCCCCCCCEEEEEC-HHH
Q ss_conf 877999778-87899999999977---99-8--18999449899--999--9977898422798817874389731-687
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASR---GL-A--NVTLLGRKEIL--MQQ--LEDTRINAKALPGIKLSPLLNFSSD-HTL 71 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~---g~-~--~V~l~~r~~~~--~~~--i~~~~~n~~~lp~i~l~~~i~~t~~-~~~ 71 (329)
..||+|+|| |..|+.+|..|+.. |. . .+.|++.++.. ++. +.-.+. ...+...+..+++ .++
T Consensus 2 p~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~amDl~~~------a~~~~~~v~~~~~~~~a 75 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDC------AFPLLAEIVITDDPNVA 75 (322)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHC------CCCCCCCEEEECCHHHH
T ss_conf 709999899968999999999711130799726999975757566676577445326------76545877974887898
Q ss_pred HHHHHHHHCCC--C--------------HHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 75555441122--1--------------77766655553320356850552375200
Q gi|254781039|r 72 LQNADIVLFAT--S--------------SKGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 72 l~~adiIiiav--p--------------s~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
++++|++|+.- | ..-++++.+.+.++-+++..++.++.-.+
T Consensus 76 ~~~aDvVvitaG~prkPG~tR~DLl~~Na~I~~~~~~~i~~~a~p~~~vivvsNPvd 132 (322)
T cd01338 76 FKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN 132 (322)
T ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 378878999368789989818999998689999999999975798838999578188
No 150
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=97.10 E-value=0.0018 Score=42.21 Aligned_cols=96 Identities=14% Similarity=0.216 Sum_probs=68.6
Q ss_pred EECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHH--HHHCCCCCCCCCCCCCCCC-EEEE-ECHHHHHHHHHHHCCC-
Q ss_conf 97788789999999997799-818999449899999--9977898422798817874-3897-3168775555441122-
Q gi|254781039|r 9 VIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQQ--LEDTRINAKALPGIKLSPL-LNFS-SDHTLLQNADIVLFAT- 82 (329)
Q Consensus 9 ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~~--i~~~~~n~~~lp~i~l~~~-i~~t-~~~~~l~~adiIiiav- 82 (329)
|||+|+-|++.|+.|..+|. +++-|.+.+++.++. +--.|--+ -+|.. +.+. .|.+..+|||+|+++.
T Consensus 1 iiG~G~VGss~A~a~~~~g~a~E~vliDin~~ka~Gea~DL~ha~~------f~~~~~~~v~~gdY~dc~daD~vVITAG 74 (302)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGLADEIVLIDINKDKAEGEAMDLQHAAS------FLPTPGVKVRAGDYSDCKDADLVVITAG 74 (302)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCHH------HCCCCCEEEECCCHHHHCCCCEEEEECC
T ss_conf 9114861899999997315031887883475778987865522222------2378611776189799638978999327
Q ss_pred CHH---------------HHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 177---------------76665555332035685055237520
Q gi|254781039|r 83 SSK---------------GYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 83 ps~---------------~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
+.| -+++++.++.++ .++.+++.+|.-.
T Consensus 75 ~~QKPGEtRL~Lv~~N~~I~K~Iv~~v~k~-gf~gI~lvatNPV 117 (302)
T TIGR01771 75 APQKPGETRLELVDRNVKIMKSIVPEVVKS-GFDGIFLVATNPV 117 (302)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEECCC
T ss_conf 775348887999998899999985465413-8984799986631
No 151
>PRK13984 putative oxidoreductase; Provisional
Probab=97.10 E-value=0.0017 Score=42.47 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=68.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH---------------------HHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 8779997788789999999997799818999449899---------------------9999977898422798817874
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL---------------------MQQLEDTRINAKALPGIKLSPL 62 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~---------------------~~~i~~~~~n~~~lp~i~l~~~ 62 (329)
-+||+|||+|-=|.+-|..|+..| |+|++|.+.+.. ++.|.+. |+++.-|
T Consensus 283 GKKVAVIGsGPAGLaaA~~Lar~G-h~VtVFE~~~~~GGlL~yGIP~fRLpk~vv~rei~~i~~~--------GV~f~~n 353 (604)
T PRK13984 283 GKKVAIVGSGPAGLSAAYFLATMG-YEVEVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL--------GVKIHTN 353 (604)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHC--------CCEEECC
T ss_conf 998999898689999999999869-8689974567789723315872228789999999999972--------9899768
Q ss_pred EEEEEC---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHH-------HHHHHCCC
Q ss_conf 389731---68775555441122177766655553320356850552375200025854310123-------32100121
Q gi|254781039|r 63 LNFSSD---HTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSE-------KVLPSHSI 132 (329)
Q Consensus 63 i~~t~~---~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~-------~~~~~~~~ 132 (329)
..+-.| .+..++.|.||+++=++.=+..- | | .++ .+|+.. ...++.++-. ...-..++
T Consensus 354 ~~VGkDit~eeL~~~yDAVfLa~Ga~~~r~L~--I-p--Ged------l~GV~~-AldfL~~~~~~~~g~~~~~~~gK~V 421 (604)
T PRK13984 354 TRVGKDISLEELREKHDAVFVSTGFTLGRSTR--I-P--GSD------HPNVIQ-ALPLLREIRDYLRGEGPKPKIPRSL 421 (604)
T ss_pred CEECCCCCHHHHHHCCCEEEEECCCCCCCCCC--C-C--CCC------CCCCEE-HHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 57798478999970589999953888776689--8-9--988------888176-7999999986542578766669758
Q ss_pred EECCCCCHHHHHHH
Q ss_conf 00128881789987
Q gi|254781039|r 133 SVLSGPGFARDIAQ 146 (329)
Q Consensus 133 ~vlsGPs~A~Eia~ 146 (329)
+|+.|-+.|.+.++
T Consensus 422 VVIGGGnTAmDcaR 435 (604)
T PRK13984 422 VVIGGGNVAMDIAR 435 (604)
T ss_pred EEECCCHHHHHHHH
T ss_conf 99898188999999
No 152
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.09 E-value=0.0025 Score=41.33 Aligned_cols=89 Identities=25% Similarity=0.293 Sum_probs=62.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
++++|||.|+.|+.+|..+..-| .+|..|+..+. + .+.....+.+..+.++.||+|.+-+|-
T Consensus 152 KtlGIIG~G~IG~~VA~~a~~fG-m~Vi~yD~~~~--------------~---~~~~~~~~~sl~ell~~sD~IslH~Pl 213 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLG-MRVIFYDIEDK--------------L---PLGNATQVGSLEELLAQSDVVSLHVPE 213 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEECCHHH--------------C---CCCCCEECCCHHHHHHHCCEEEECCCC
T ss_conf 78986367547699999998769-98999786021--------------2---566846748899998759999982679
Q ss_pred H-HHHHHH-HHHHHHCCCCCCEEECCCCC
Q ss_conf 7-766655-55332035685055237520
Q gi|254781039|r 85 K-GYGEAL-NFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 85 ~-~~~~~l-~~i~~~l~~~~~ii~~sKGi 111 (329)
. ..+..+ ++....++++..+|+++.|=
T Consensus 214 t~~T~~lIn~~~l~~MK~ga~LIN~ARG~ 242 (409)
T PRK11790 214 TPSTKNMIGAEELALMKPGAILINASRGT 242 (409)
T ss_pred CHHHHCCCCHHHHHHCCCCCEEEECCCCH
T ss_conf 84663104399997269998999868851
No 153
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.08 E-value=0.0036 Score=40.31 Aligned_cols=104 Identities=20% Similarity=0.268 Sum_probs=60.3
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHC---CCCCCCCCCCCCCCCEEEEE-CHHHHHH
Q ss_conf 988877999778-87899999999977998189-994498999999977---89842279881787438973-1687755
Q gi|254781039|r 1 MKNYSTIFVIGA-GAFGTALSSVIASRGLANVT-LLGRKEILMQQLEDT---RINAKALPGIKLSPLLNFSS-DHTLLQN 74 (329)
Q Consensus 1 M~~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~-l~~r~~~~~~~i~~~---~~n~~~lp~i~l~~~i~~t~-~~~~l~~ 74 (329)
|++| ||+|+|+ |.-|.-|-..|+..-.-++. +.+.+...-+.+.+. +.... +|. .-.++.+.+ +...+.+
T Consensus 1 M~ki-kvaIvGatGy~G~ELirlL~~HP~~ei~~l~aS~~~aGk~~~~~~~~~~~~~-~p~--~~~~l~~~~~~~~~~~~ 76 (350)
T PRK08664 1 MDKL-KVGVLGATGLVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGP-IPE--EVADLEVVSTDPVDVDD 76 (350)
T ss_pred CCCC-EEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHCCCCCCC-CCC--CCCCEEEEECCHHHHCC
T ss_conf 9977-7999898429999999999709996689999655337884155203223466-764--44650798688457438
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 5544112217776665555332035685055237520
Q gi|254781039|r 75 ADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 75 adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
+|++|+|+|...-.++.+++. ..+..||.++--+
T Consensus 77 ~DvvF~AlPhg~s~~~~~~l~---~~g~~VIDlSadf 110 (350)
T PRK08664 77 VDIVFSALPSDVAAEVEEEFA---KAGKPVFSNASAH 110 (350)
T ss_pred CCEEEECCCCHHHHHHHHHHH---HCCCEEEECCHHH
T ss_conf 999999898269999999998---7798899786220
No 154
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.04 E-value=0.00098 Score=43.98 Aligned_cols=34 Identities=41% Similarity=0.582 Sum_probs=31.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 87799977887899999999977998189994498
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|++|+|||+|-.|.+.|..|++.| ++|++++|++
T Consensus 1 m~~V~VIGaGivGlstA~~La~~G-~~VtviDr~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRG-YQVTVFDRHR 34 (410)
T ss_pred CCCEEEECCHHHHHHHHHHHHHCC-CCEEEEECCC
T ss_conf 995999898399999999999789-9189996989
No 155
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=97.03 E-value=0.00069 Score=44.99 Aligned_cols=102 Identities=20% Similarity=0.315 Sum_probs=65.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC-------CC----------CCCCCCCCC-CEEEE
Q ss_conf 7799977887899999999977998189994498999999977898-------42----------279881787-43897
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRIN-------AK----------ALPGIKLSP-LLNFS 66 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n-------~~----------~lp~i~l~~-~i~~t 66 (329)
++|.|+|+|..|+..+..|+..|..++.+++.|.-....+++.-.. +| .-|++++.. +-.++
T Consensus 33 s~VlivG~GGlG~~~~~~La~aGvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~Kv~~a~~~l~~inp~i~i~~~~~~i~ 112 (245)
T PRK05690 33 ARVLVVGLGGLGCAAAQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAKAALARINPHIAIETINARLD 112 (245)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEHHCCC
T ss_conf 97899877777899999999859965999968867888678886459877898879999999997588752263331448
Q ss_pred E--CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 3--16877555544112217776665555332035685055237
Q gi|254781039|r 67 S--DHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 67 ~--~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
. ..+.++++|+|+-|+-....|..+.+..- +.+.++|+.+
T Consensus 113 ~~n~~~li~~~DlViD~~Dn~~~R~~ln~~c~--~~~~P~v~g~ 154 (245)
T PRK05690 113 DDELAALIAAHDLVLDCTDNVATRNQLNAACF--AAKKPLVSGA 154 (245)
T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH--HCCCCEEEEE
T ss_conf 88998875078889987899999999999999--7199879877
No 156
>PRK07574 formate dehydrogenase; Provisional
Probab=97.03 E-value=0.0035 Score=40.37 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=62.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC---HHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 779997788789999999997799818999449---89999999778984227988178743897316877555544112
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRK---EILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~---~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiia 81 (329)
++++|||.|+.|.++|..+.--| .+|..|++. ++..+.++ ..+ ..+..+.++.||+|.+.
T Consensus 193 KTlGIVG~GrIG~~VArra~aFg-m~Vl~yDp~~l~~~~e~~lg-----~~~-----------~~sldeLl~~sDvVslh 255 (385)
T PRK07574 193 MTVGTVGAGRIGLAVLRRLKPFD-VTLHYTDRHRLPAEVEQELG-----LTY-----------HPDVDSLVSVCDVVTIH 255 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCCHHHHHHCC-----CCC-----------CCCHHHHHHHCCEEEEC
T ss_conf 98999897889999999999779-98998588669889999719-----865-----------68999998628969986
Q ss_pred CCHH-HHHHHH-HHHHHHCCCCCCEEECCCCC
Q ss_conf 2177-766655-55332035685055237520
Q gi|254781039|r 82 TSSK-GYGEAL-NFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 82 vps~-~~~~~l-~~i~~~l~~~~~ii~~sKGi 111 (329)
+|-. ..+..+ ++....++++..+|+++.|=
T Consensus 256 ~PLt~eT~~Lin~~~l~~MK~ga~LVNtARG~ 287 (385)
T PRK07574 256 CPLHPETEHLFDKDVLSRMKRGSYLVNTARGK 287 (385)
T ss_pred CCCCHHHHHHCCHHHHHCCCCCCEEEECCCCH
T ss_conf 67985774010299994389981899888611
No 157
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.02 E-value=0.0037 Score=40.21 Aligned_cols=88 Identities=23% Similarity=0.264 Sum_probs=62.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC
Q ss_conf 77999778878999999999779981899944--9899999997789842279881787438973168775555441122
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGR--KEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT 82 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r--~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav 82 (329)
++++|+|.|+.|+.+|..+.--| .+|..|+. +++..+.+ .+...+..+.++.||+|.+.+
T Consensus 139 ktlGIiG~G~IG~~vA~~~~~fg-m~Vi~yDP~~~~~~~~~~-----------------gv~~~~l~ell~~sD~IslH~ 200 (524)
T PRK13581 139 KTLGVIGLGRIGSEVAKRAKAFG-MKVIAYDPYISPERAAQL-----------------GVELVELDELLARADFITLHT 200 (524)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHC-----------------CCEEEEHHHHHHHCCEEEECC
T ss_conf 88999776757899999998549-747887776446679871-----------------966860899731088999936
Q ss_pred CHH-HHHHHH-HHHHHHCCCCCCEEECCCC
Q ss_conf 177-766655-5533203568505523752
Q gi|254781039|r 83 SSK-GYGEAL-NFYSNWLKESAEIIICSKG 110 (329)
Q Consensus 83 ps~-~~~~~l-~~i~~~l~~~~~ii~~sKG 110 (329)
|-. ..+..+ ++....+|++..+|+++.|
T Consensus 201 Plt~eT~~li~~~~~~~MK~ga~lIN~aRG 230 (524)
T PRK13581 201 PLTPETRNLIGAEELAKMKPGVRIINCARG 230 (524)
T ss_pred CCCHHHHHHCCHHHHHHCCCCCEEEECCCC
T ss_conf 786155443079999606899869974887
No 158
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.02 E-value=0.0014 Score=42.96 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=8.5
Q ss_pred CCCEECCCCC-HHHHHHHHHHH
Q ss_conf 1210012888-17899876532
Q gi|254781039|r 130 HSISVLSGPG-FARDIAQGLPV 150 (329)
Q Consensus 130 ~~~~vlsGPs-~A~Eia~~~pt 150 (329)
..+.|...|. .+..||+.-.+
T Consensus 87 ~gI~V~n~pg~~~~~VAE~~i~ 108 (314)
T PRK06932 87 LGITVKNVTGYSSTTVPEHVLG 108 (314)
T ss_pred CCEEEEECCCCCHHHHHHHHHH
T ss_conf 9979993898672789999999
No 159
>KOG0069 consensus
Probab=97.02 E-value=0.002 Score=42.02 Aligned_cols=91 Identities=20% Similarity=0.329 Sum_probs=63.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEE-CCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 7799977887899999999977998189994-498999999977898422798817874389731687755554411221
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLG-RKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~-r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
++|+|+|.|+.|+++|..|-.-| ....|. |.+...+.-.+. +. ...+..+.+.++|+|+++.|
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg--~~i~y~~r~~~~~~~~~~~--~~------------~~~d~~~~~~~sD~ivv~~p 226 (336)
T KOG0069 163 KTVGILGLGRIGKAIAKRLKPFG--CVILYHSRTQLPPEEAYEY--YA------------EFVDIEELLANSDVIVVNCP 226 (336)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCCHHHHHHH--CC------------CCCCHHHHHHHCCEEEEECC
T ss_conf 77999627478899999635326--6255411357763668874--35------------43678888732887999268
Q ss_pred HH-HHHHHH-HHHHHHCCCCCCEEECCCCC
Q ss_conf 77-766655-55332035685055237520
Q gi|254781039|r 84 SK-GYGEAL-NFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 84 s~-~~~~~l-~~i~~~l~~~~~ii~~sKGi 111 (329)
.. ..+..+ ++.-..+++...+|+++.|=
T Consensus 227 Lt~~T~~liNk~~~~~mk~g~vlVN~aRG~ 256 (336)
T KOG0069 227 LTKETRHLINKKFIEKMKDGAVLVNTARGA 256 (336)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 977888776099998647976999646424
No 160
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.01 E-value=0.0057 Score=39.03 Aligned_cols=40 Identities=25% Similarity=0.516 Sum_probs=15.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 779997788789999999997799818999449899999997
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
++|.|+|+|..|..+|..|. ++ ++|++..+|++.++.+.+
T Consensus 233 ~~v~I~Ggg~ig~~la~~L~-~~-~~v~iIe~d~~~~~~la~ 272 (455)
T PRK09496 233 KRIMIAGGGNIGLYLAKLLE-KG-YSVKLIERDPERAEELAE 272 (455)
T ss_pred CEEEEECCCHHHHHHHHHHH-CC-CEEEEECCCHHHHHHHHH
T ss_conf 51899878699999999874-08-838997089899999997
No 161
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=96.98 E-value=0.0018 Score=42.27 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=61.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE---CHH-HHHHHHHHHCCC
Q ss_conf 9997788789999999997799818999449899999997789842279881787438973---168-775555441122
Q gi|254781039|r 7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS---DHT-LLQNADIVLFAT 82 (329)
Q Consensus 7 I~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~---~~~-~l~~adiIiiav 82 (329)
|.|+|.|.+|..+|..|.+.+ +|.+..+|++.++.+.+.+.+..+ . .+++ ..+ .+.+++.+++++
T Consensus 1 viI~G~g~~G~~la~~L~~~~--~v~vId~d~~~~~~~~~~~~~vi~-G--------D~~~~~~L~~a~i~~a~~vi~~~ 69 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG--PVVVIDKDPERVEELREEGVPVVV-G--------DATDEEVLEEAGIEDADAVVAAT 69 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHCCCEEEE-E--------ECCCHHHHHHHCCCCCCEEEEEC
T ss_conf 999878889999999998089--999999987998778866986999-9--------56886678761920287999962
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 17776665555332035685055237
Q gi|254781039|r 83 SSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 83 ps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
+.....-.+-.....+.+...++.-+
T Consensus 70 ~~d~~n~~~~~~~r~~~~~~~iiar~ 95 (115)
T pfam02254 70 GDDEANILIVLLARELNPAKKIIARA 95 (115)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 98499999999999978998099998
No 162
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.98 E-value=0.0015 Score=42.76 Aligned_cols=165 Identities=18% Similarity=0.131 Sum_probs=83.6
Q ss_pred CEEEEECCCH--HHHHHHHHHHHC---CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHH
Q ss_conf 7799977887--899999999977---998189994498999999977898422798817874389731-6877555544
Q gi|254781039|r 5 STIFVIGAGA--FGTALSSVIASR---GLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIV 78 (329)
Q Consensus 5 ~kI~ViGaGa--~GtAlA~~La~~---g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiI 78 (329)
.||+|||+|+ |.--|-..+... ...++.|++.|++..+.+..--. ++......+-.+..|+| .+++++||+|
T Consensus 1 ~KI~iIGgGS~~ftp~li~~l~~~~~l~~~ei~L~Did~erl~~v~~l~~--~~~~~~~~~~~v~~Ttd~~eAl~gADfV 78 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAK--KIVEELGAPLKIEATTDRREALDGADFV 78 (423)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHH--HHHHHHCCCEEEEEECCHHHHHCCCCEE
T ss_conf 97999998648759999999960845789989998899999999999999--9998519981899968999984689999
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCC-EEECCC---CCCCCCCCCCC---HH---HHHHHHHCCCEECCCCCHHHHHHH--
Q ss_conf 1122177766655553320356850-552375---20002585431---01---233210012100128881789987--
Q gi|254781039|r 79 LFATSSKGYGEALNFYSNWLKESAE-IIICSK---GFEYNSGMLLS---SY---SEKVLPSHSISVLSGPGFARDIAQ-- 146 (329)
Q Consensus 79 iiavps~~~~~~l~~i~~~l~~~~~-ii~~sK---Gi~~~t~~~~s---e~---i~~~~~~~~~~vlsGPs~A~Eia~-- 146 (329)
|..+-..++......-+--++-+.. -+--|- ||- ...++++ |+ +++.-|+--+-=.+.|+.----|-
T Consensus 79 ~~~irvGg~~~r~~De~Iplk~Gv~~~vGET~G~GG~~-~alRtIPv~leia~~i~e~~P~AwiiNytNP~~ivteal~r 157 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIF-RALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNR 157 (423)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCHHHHH-HHHCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
T ss_conf 99877468248898884898839660445654775899-98622899999999999879983899767888999999997
Q ss_pred HHHHH-CCCCCCHHHHHHHHHHHHCCC
Q ss_conf 65321-246773178999999753411
Q gi|254781039|r 147 GLPVG-VILSSKNIDISRRLSKILTTD 172 (329)
Q Consensus 147 ~~pt~-~~ia~~d~~~~~~i~~~~~~~ 172 (329)
.-|.- +-++-.-....+.+++++.-+
T Consensus 158 ~~~~k~iGlC~~p~~~~~~la~~l~~~ 184 (423)
T cd05297 158 YTPIKTVGLCHGVQGTAEQLAKLLGEP 184 (423)
T ss_pred HCCCCEEEECCCHHHHHHHHHHHHCCC
T ss_conf 389978987977699999999982998
No 163
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.98 E-value=0.004 Score=39.99 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=60.2
Q ss_pred CCEEEEECCCHHH-HHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHH--HHHH
Q ss_conf 8779997788789-999999997799--8189994498999999977898422798817874389731687755--5544
Q gi|254781039|r 4 YSTIFVIGAGAFG-TALSSVIASRGL--ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQN--ADIV 78 (329)
Q Consensus 4 ~~kI~ViGaGa~G-tAlA~~La~~g~--~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~--adiI 78 (329)
+.||+|||+|.++ ...+..+...+. .-|-+++++++..+...+... + + ..+++..+.+.+ .|+|
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~-------~--~--~~~~~~~~ll~~~~iD~V 71 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG-------I--A--KAYTDLEELLADPDIDAV 71 (342)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCC-------C--C--CCCCCHHHHHCCCCCCEE
T ss_conf 3279998987678888899997388746999996499899999999819-------9--7--452999999459999889
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 112217776665555332035685055237520
Q gi|254781039|r 79 LFATSSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 79 iiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
++|+|.....++... .++.++. |.|-|-+
T Consensus 72 ~Iatp~~~H~~~a~~---AL~aGkh-Vl~EKPl 100 (342)
T COG0673 72 YIATPNALHAELALA---ALEAGKH-VLCEKPL 100 (342)
T ss_pred EEECCCHHHHHHHHH---HHHCCCE-EEEECCC
T ss_conf 996980677999999---9977996-9992899
No 164
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=96.97 E-value=0.0043 Score=39.78 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=96.5
Q ss_pred CCEEEEECCCH--------------------HHHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 87799977887--------------------89999999997799818999449-----899999997789842279881
Q gi|254781039|r 4 YSTIFVIGAGA--------------------FGTALSSVIASRGLANVTLLGRK-----EILMQQLEDTRINAKALPGIK 58 (329)
Q Consensus 4 ~~kI~ViGaGa--------------------~GtAlA~~La~~g~~~V~l~~r~-----~~~~~~i~~~~~n~~~lp~i~ 58 (329)
|+||+|+|+|+ -|+.+|.-+++.| |+|.|-..+ +++.+...+-+ ++
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAG-HDVVLaePn~d~~dd~~w~~vedAG--------V~ 71 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAG-HDVVLAEPNRDIMDDEHWKRVEDAG--------VE 71 (340)
T ss_pred CCEEEEECCCCCCHHHHHCCCHHHHCCCCCCCCHHHHHHHHHCC-CCEEEECCCCCCCCHHHHHHHHHCC--------CE
T ss_conf 95589972775011387619756518999987048899998747-8579636872203889999998658--------27
Q ss_pred CCCCEEEEECHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHCCCCCCEEECCC--------CCCCCCCCCCCHHHHHHHHH
Q ss_conf 787438973168775555441122177-766655553320356850552375--------20002585431012332100
Q gi|254781039|r 59 LSPLLNFSSDHTLLQNADIVLFATSSK-GYGEALNFYSNWLKESAEIIICSK--------GFEYNSGMLLSSYSEKVLPS 129 (329)
Q Consensus 59 l~~~i~~t~~~~~l~~adiIiiavps~-~~~~~l~~i~~~l~~~~~ii~~sK--------Gi~~~t~~~~se~i~~~~~~ 129 (329)
..++|.++.+.+++.++-+|-. ..-.+.++|.+++.+++.|.+.+- ++|. .+++.-+-+- ..+.
T Consensus 72 -----vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~-~Lr~kR~dVG-vssm 144 (340)
T COG4007 72 -----VVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG-ELRTKREDVG-VSSM 144 (340)
T ss_pred -----EECCCHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHH-HHCCCHHHCC-CCCC
T ss_conf -----74273555305658999626532667899999843867868616666764688877656-6457355357-2356
Q ss_pred CCCEECCCCCHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 1210012888178998765321-24677317899999975341113899738
Q gi|254781039|r 130 HSISVLSGPGFARDIAQGLPVG-VILSSKNIDISRRLSKILTTDSFRVYCSD 180 (329)
Q Consensus 130 ~~~~vlsGPs~A~Eia~~~pt~-~~ia~~d~~~~~~i~~~~~~~~~~~~~s~ 180 (329)
+|-++=.-|++-.=+..+++|. ..+|.. +..++..++.++--..+|...
T Consensus 145 HPAgvPGtp~h~~yviagr~t~g~elATe--EQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 145 HPAGVPGTPQHGHYVIAGRSTEGKELATE--EQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred CCCCCCCCCCCCEEEEECCCCCCEEECCH--HHHHHHHHHHHHCCCCEEECC
T ss_conf 87789998777638982167776230349--999999999986197227627
No 165
>PRK12831 putative oxidoreductase; Provisional
Probab=96.97 E-value=0.0017 Score=42.38 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=31.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 8877999778878999999999779981899944989
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
+-+||+|||+|-=|.+-|..|+..| |+|++|.+.+.
T Consensus 139 ~gkkVAVIGsGPAGLsaA~~La~~G-~~VtVfE~~~~ 174 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKKG-YDVTIFEALHE 174 (464)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEECCCCC
T ss_conf 9998999897689999999999769-91799827888
No 166
>PRK08291 ornithine cyclodeaminase; Validated
Probab=96.95 E-value=0.0023 Score=41.57 Aligned_cols=94 Identities=23% Similarity=0.337 Sum_probs=61.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHC
Q ss_conf 8877999778878999999999-77998189994498999999977898422798817874389731-687755554411
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIA-SRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLF 80 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La-~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIii 80 (329)
+-++++|||+|.-+-+-...+. -....+|++|+|+++..+.+.+.-. . ++.-.+.+.++ .++++++|+|+.
T Consensus 131 da~~l~iiG~G~QA~~~l~Al~~v~~i~~v~v~~r~~~~a~~f~~~~~-~------~~g~~v~~~~~~~~av~~aDIIvt 203 (330)
T PRK08291 131 DASRVAVFGAGEQARLQLEALTLVRDIREVRVWARDAAKAEAFAAELR-A------ALGIPVTVARDVHAALAGADIVVT 203 (330)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH-H------HHCCCEEEECCHHHHHHCCCEEEE
T ss_conf 985699987648899999999973897689998389899999999998-9------769966992999999722888999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 221777666555533203568505523
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIIC 107 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~ 107 (329)
|+||.. .+++ ..++++++.|...
T Consensus 204 aT~s~~--Pv~~--~~~lkpG~hI~ai 226 (330)
T PRK08291 204 TTPSEE--PILK--AEWLHPGLHVTAM 226 (330)
T ss_pred EECCCC--CCCC--HHHCCCCCEEEEE
T ss_conf 768999--5015--1006998289970
No 167
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.94 E-value=0.0032 Score=40.65 Aligned_cols=91 Identities=22% Similarity=0.347 Sum_probs=58.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHC
Q ss_conf 8877999778878999999999-77998189994498999999977898422798817874389731-687755554411
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIA-SRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLF 80 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La-~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIii 80 (329)
+-++++|||+|.-+-.....+. -....+|++|+|+++..+.+.+.-.. . + .++.+.++ .+++.+||+|+.
T Consensus 124 ~~~~l~iiG~G~QA~~~l~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-~---~----~~~~~~~~~~~av~~aDII~t 195 (313)
T PRK06141 124 DARRLLVVGTGRLASLLALAHASVRPIKQVRVWGRNPAKAAALAAELRE-Q---G----FDAEVVTDLEAAVRQADIISC 195 (313)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH-C---C----CCEEEECCHHHHHHHCCEEEE
T ss_conf 9767999778899999999999728975899993898999999999985-0---9----975995899998610877997
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 2217776665555332035685055
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEII 105 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii 105 (329)
+++|.. .+++ ..++++++.|.
T Consensus 196 aT~s~~--Pv~~--~~~l~~G~hI~ 216 (313)
T PRK06141 196 ATLSTE--PLVR--GEWLRPGTHLD 216 (313)
T ss_pred CCCCCC--CCCC--CCCCCCCCEEE
T ss_conf 168898--6446--44467872697
No 168
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.93 E-value=0.0038 Score=40.18 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=59.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHCC
Q ss_conf 8779997788789999999997-7998189994498999999977898422798817874389731-6877555544112
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIAS-RGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLFA 81 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~-~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIiia 81 (329)
-.+++|||+|.-+-.....+.. ....+|++|+|+++..+.+-+.-. .+ +.-.+.+.++ .+++.+||+|+.|
T Consensus 127 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~~~~f~~~~~-~~------~g~~v~~~~~~~~av~~aDiV~ta 199 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIEKVRVYSRTFEKAYAFAQEIQ-SK------FNTEIYVVESADEAIEEADIIVTV 199 (325)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH-HH------CCCCEEEECCHHHHHHHCCEEEEE
T ss_conf 85699975607999999999860896689999479999999999998-75------099669958999998439889992
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 217776665555332035685055
Q gi|254781039|r 82 TSSKGYGEALNFYSNWLKESAEII 105 (329)
Q Consensus 82 vps~~~~~~l~~i~~~l~~~~~ii 105 (329)
+||.. .+++ ..+++++.|.
T Consensus 200 T~s~~--Pv~~---~~l~~g~hi~ 218 (325)
T PRK08618 200 TNAKT--PVFS---EKLKKGVHIN 218 (325)
T ss_pred CCCCC--CCCC---CCCCCCEEEC
T ss_conf 59998--6445---4358871751
No 169
>PRK06046 alanine dehydrogenase; Validated
Probab=96.92 E-value=0.003 Score=40.85 Aligned_cols=92 Identities=18% Similarity=0.268 Sum_probs=60.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 88779997788789999999997-79981899944989999999778984227988178743897316877555544112
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIAS-RGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~-~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiia 81 (329)
+-++++|||+|..+-+-+..++. ....+|++|+|+++..+.+.+.-. . .++-.+.+.++.+...++|+|+.|
T Consensus 128 ~~~~l~iiG~G~Qa~~~~~al~~v~~i~~i~v~~r~~~~~~~fa~~~~--~-----~~~~~v~~~~~~~~~~~aDiI~ta 200 (326)
T PRK06046 128 DSKVIGIIGAGNQARTQLEALSRVFDLEEVRVYDRTKESCEKFISEMS--D-----FVPCEIVYEEDVEEACDCDILVTT 200 (326)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--H-----HCCCCEEECCCHHHHHCCCEEEEE
T ss_conf 985589965708899999999973897789999189999999999998--6-----559865973999998279999998
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 217776665555332035685055
Q gi|254781039|r 82 TSSKGYGEALNFYSNWLKESAEII 105 (329)
Q Consensus 82 vps~~~~~~l~~i~~~l~~~~~ii 105 (329)
+||.. .+++ ..++++++.|.
T Consensus 201 T~s~~--P~~~--~~~l~pG~hi~ 220 (326)
T PRK06046 201 TPSRK--PVVK--ADWVKEGTHIN 220 (326)
T ss_pred ECCCC--CEEC--CCCCCCCCEEE
T ss_conf 28998--4514--43357871774
No 170
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.92 E-value=0.0035 Score=40.43 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=65.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHC
Q ss_conf 88779997788789999999997-7998189994498999999977898422798817874389731-687755554411
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIAS-RGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLF 80 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~-~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIii 80 (329)
+-..++|||+|.-+-+-...+.. ....+|++|+|+++..+.+.+.- .. .++ -.+...++ .++++++|+|+.
T Consensus 117 ~~~~l~iiG~G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~-~~--~~~----~~v~~~~~~e~av~~aDiI~t 189 (302)
T PRK06407 117 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERF-SK--EFG----VDIRPVDNAEAALRDADTITS 189 (302)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HH--HCC----CCEEEECCHHHHHHHCCEEEE
T ss_conf 98789999665999999999997407738999808889999999998-64--409----957994899999834999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHH
Q ss_conf 22177766655553320356850552375200025854310123
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSE 124 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~ 124 (329)
++||.. .+++ .++++++..|.. .=...++...+.++++.
T Consensus 190 aT~s~~--Pv~~--~~~l~~g~hi~a-iGa~~p~~~Eld~~ll~ 228 (302)
T PRK06407 190 ITNSDT--PIFN--RKYLGDEYHVNL-AGSNYPNRREAEHSVLN 228 (302)
T ss_pred ECCCCC--CCCC--HHHCCCCCEEEE-ECCCCCCCCCCCHHHHH
T ss_conf 418988--6715--888799948996-37999985307999996
No 171
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.91 E-value=0.0053 Score=39.22 Aligned_cols=91 Identities=22% Similarity=0.273 Sum_probs=62.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC
Q ss_conf 7799977887899999999977--99818999449899999997789842279881787438973168775555441122
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASR--GLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT 82 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~--g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav 82 (329)
.+|+++|+|+.|..+...+-+. ...-|.+|+|+.+.+..+.....- ... ++..+.+.+.|+++-|-
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~-----------~~~-s~ide~~~~~DlvVEaA 68 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGR-----------RCV-SDIDELIAEVDLVVEAA 68 (255)
T ss_pred CEEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCC-----------CCC-CCHHHHHHCCCEEEEEC
T ss_conf 957898233788999999866886436999944887888888860388-----------763-56777730244254307
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 1777666555533203568505523752
Q gi|254781039|r 83 SSKGYGEALNFYSNWLKESAEIIICSKG 110 (329)
Q Consensus 83 ps~~~~~~l~~i~~~l~~~~~ii~~sKG 110 (329)
..+.+++...++.+ .+..++..+-|
T Consensus 69 S~~Av~e~~~~~L~---~g~d~iV~SVG 93 (255)
T COG1712 69 SPEAVREYVPKILK---AGIDVIVMSVG 93 (255)
T ss_pred CHHHHHHHHHHHHH---CCCCEEEEECH
T ss_conf 88999998699996---59988999512
No 172
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.91 E-value=0.0034 Score=40.50 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=66.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH---------------------HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88779997788789999999997799818999449899---------------------999997789842279881787
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL---------------------MQQLEDTRINAKALPGIKLSP 61 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~---------------------~~~i~~~~~n~~~lp~i~l~~ 61 (329)
+-+||+|||+|-=|.+-|..|+..| |+|++|.+.+.. ++.|.+. |+++..
T Consensus 136 tgkkVAVIGaGPAGLsaA~~La~~G-~~VtVfE~~~~~GGml~~GIP~yRLP~~vl~~ei~~i~~~--------GV~~~~ 206 (560)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYQLRRLG-HAVTIFEAGPKLGGMMRYGIPGYRLPRDVLDAEIQRILDL--------GVEVKL 206 (560)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHC--------CCEEEE
T ss_conf 8998999897789999999999769-8589967678889888356875447589999999999964--------967983
Q ss_pred CEEEEEC--HH-HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHH--HHHHHCCCEECC
Q ss_conf 4389731--68-775555441122177766655553320356850552375200025854310123--321001210012
Q gi|254781039|r 62 LLNFSSD--HT-LLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSE--KVLPSHSISVLS 136 (329)
Q Consensus 62 ~i~~t~~--~~-~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~--~~~~~~~~~vls 136 (329)
|..+..| .+ ..++.|.||+|+=++.-+.. .+.. .+ .+|+. ....++.++-. ......+++|+.
T Consensus 207 n~~vg~dit~~~L~~~yDAV~la~Ga~~~r~l--~i~G---~d------~~gV~-~al~fL~~~~~g~~~~~Gk~VvVIG 274 (560)
T PRK12771 207 GVRVGEDITLEQLEGDYDAVFVAIGAQLGKRL--PIPG---ED------AANVL-DAVSFLRAVEEGEPPKLGKRVVVIG 274 (560)
T ss_pred CCEECCCCCHHHHHCCCCEEEECCCCCCCCCC--CCCC---CC------CCCCE-EHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 87844656799971778889991687877608--9788---77------65524-0599999975689755688689989
Q ss_pred CCCHHHHHHHH
Q ss_conf 88817899876
Q gi|254781039|r 137 GPGFARDIAQG 147 (329)
Q Consensus 137 GPs~A~Eia~~ 147 (329)
|-+.|.++++-
T Consensus 275 GGntAmD~art 285 (560)
T PRK12771 275 GGNTAMDAART 285 (560)
T ss_pred CCCHHHHHHHH
T ss_conf 98228999999
No 173
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.90 E-value=0.0012 Score=43.39 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=62.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCC--CC--------CCCCCCEEEEE------
Q ss_conf 877999778878999999999779981899944989999999778984227--98--------81787438973------
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKAL--PG--------IKLSPLLNFSS------ 67 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~l--p~--------i~l~~~i~~t~------ 67 (329)
.++|.|+|+|..|+.+|..|+..|.-++++++.|.-....+++.-.....+ |. ..+++.++++.
T Consensus 27 ~s~VlivG~GGLG~~~a~~La~aGVG~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~v~I~~~~~~l~ 106 (209)
T PRK08644 27 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMFKVEALKENLLRINPFVKIEVHQVKID 106 (209)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 29689988878899999999993898189988999015411037567877597569999999874489828999722489
Q ss_pred ---CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf ---16877555544112217776665555332035685055237
Q gi|254781039|r 68 ---DHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 68 ---~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
..+.++++|+|+=|+-....|..+.+..-. +.+.++++.+
T Consensus 107 ~~n~~~l~~~~DiViDctDN~~tR~li~~~c~~-~~~~plV~as 149 (209)
T PRK08644 107 EDNIEELFKDCDIVVEAFDNAETKAMLVETVLE-KKGKKVVSAS 149 (209)
T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH-HCCCCEEEEE
T ss_conf 899999985799999999999999999999999-7799689996
No 174
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=96.87 E-value=0.0044 Score=39.75 Aligned_cols=93 Identities=20% Similarity=0.347 Sum_probs=61.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHC
Q ss_conf 88779997788789999999997-7998189994498999999977898422798817874389731-687755554411
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIAS-RGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLF 80 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~-~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIii 80 (329)
+-.+++|||+|.-+-+-...++. ....+|++|+|+++..+.+.+.-.. +++ .+...++ .+++.+||+|+.
T Consensus 128 da~~l~iiGaG~QA~~~l~al~~v~~i~~v~v~~r~~~~~~~f~~~~~~----~~~----~v~~~~~~~~av~~ADIIvt 199 (312)
T pfam02423 128 DASTLAIIGAGAQAEFQAEALSAVLPIEEIRIYDRDPEAAEKFARNLQG----KGF----EIVACTSAEEAVEGADIVVT 199 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----CCC----CEEEECCHHHHHHCCCEEEE
T ss_conf 9757999646253899999999619976899996898999999999983----499----65994899999714998999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 22177766655553320356850552
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIII 106 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~ 106 (329)
|++|..- -+++ ..++++++.|..
T Consensus 200 aT~s~~~-P~~~--~~~l~~G~hv~~ 222 (312)
T pfam02423 200 VTPDKEF-PILK--AEWVKPGVHINA 222 (312)
T ss_pred EECCCCC-CCCC--HHHCCCCCEEEE
T ss_conf 7359977-5007--788389868997
No 175
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.87 E-value=0.003 Score=40.80 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHH-----------HHHHC---CCCCCCCCCCC---CCCCEEE---EECHHHHHH
Q ss_conf 8999999999779981899944989999-----------99977---89842279881---7874389---731687755
Q gi|254781039|r 15 FGTALSSVIASRGLANVTLLGRKEILMQ-----------QLEDT---RINAKALPGIK---LSPLLNF---SSDHTLLQN 74 (329)
Q Consensus 15 ~GtAlA~~La~~g~~~V~l~~r~~~~~~-----------~i~~~---~~n~~~lp~i~---l~~~i~~---t~~~~~l~~ 74 (329)
||+.+|..++.+| ++|++++.+++..+ .|.+. ......+..-. .-.++.+ +++.+++++
T Consensus 1 MG~gIA~~~A~~G-~~V~l~Di~~~~~e~~~~~~~~~~~~i~~~l~~~~~~g~l~~~~~~~~l~ri~~~~~~~~~~al~d 79 (311)
T PRK08269 1 MGQGIALAFAFAG-LDVTLIDFKPRDAAGFEAFDARARAEIGRPLAALVALGRIDAAQADAVLARIAVVARDGAADALAD 79 (311)
T ss_pred CHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHCC
T ss_conf 9379999998179-808999798035566899999999999999999997599998999999961334687650878478
Q ss_pred HHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 55441122177--7666555533203568505523752000
Q gi|254781039|r 75 ADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEY 113 (329)
Q Consensus 75 adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~ 113 (329)
||+||-|||-. -=+++++++.+..++++++.|.|-+|..
T Consensus 80 aDlVIEAV~E~l~iK~~vf~~l~~~~~~~~IlaSNTSsl~i 120 (311)
T PRK08269 80 ADLVFEAVPEVLDAKRDALRWLGRHVDADATIASTTSTFLV 120 (311)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 99999887058899999999999767987479830662789
No 176
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.86 E-value=0.0015 Score=42.86 Aligned_cols=102 Identities=20% Similarity=0.317 Sum_probs=65.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCC-C--CCC--------CCCCCCEEEE-------
Q ss_conf 779997788789999999997799818999449899999997789842-2--798--------8178743897-------
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAK-A--LPG--------IKLSPLLNFS------- 66 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~-~--lp~--------i~l~~~i~~t------- 66 (329)
++|.|+|+|..|+..|..|+..|.-++.+++.|.-....+++.-.... . .|. -.+++.+.+.
T Consensus 139 a~VlivG~GGLGs~~a~yLA~aGVG~i~lvD~D~Ve~SNL~RQil~~~~diG~~Ka~~a~~~L~~~Np~i~i~~~~~~l~ 218 (379)
T PRK08762 139 ARVLLIGAGGLGSPAAFYLAAAGVGHLRIADHDVVDRSNLQRQILHTEDSVGQPKVDSAAQRIAALNPRVQVEAVQTRVT 218 (379)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEHHCCC
T ss_conf 97899888755799999999837975897628861334501125746433555589999999998689973385021089
Q ss_pred EC--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 31--6877555544112217776665555332035685055237
Q gi|254781039|r 67 SD--HTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 67 ~~--~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
.+ .+.++++|+|+-|+-....|..+++..- +.++++|+.+
T Consensus 219 ~~n~~~li~~~DlViDctDN~~tR~liN~~c~--~~~~PlV~ga 260 (379)
T PRK08762 219 SSNVEALLQDVDVVVDGADNFPARYLLNDACV--KLGKPLVYGA 260 (379)
T ss_pred HHHHHHHHHHCCEEEECCCCHHHHHHHHHHHH--HHCCCEEEEE
T ss_conf 89999998628899986887788999999999--9799979998
No 177
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.86 E-value=0.0037 Score=40.26 Aligned_cols=78 Identities=29% Similarity=0.462 Sum_probs=52.0
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC---HHHHHHHHHHHC
Q ss_conf 7799977-887899999999977998189994498999999977898422798817874389731---687755554411
Q gi|254781039|r 5 STIFVIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD---HTLLQNADIVLF 80 (329)
Q Consensus 5 ~kI~ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~---~~~l~~adiIii 80 (329)
+++.|+| .|..|.+.|..|++.| .+|+|.+|+.+.++.+.+. .+.+| +..+.. +..+++ .+.+.++|+||-
T Consensus 29 ~~~~V~G~tG~vG~~~A~~lA~~G-a~v~lv~R~~ek~~~~a~~-i~~r~--g~~~~~-~~~~~~~~~~~~l~~adiV~~ 103 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRDLERAQKAADS-LRARF--GEGVGA-VETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH-HHHHC--CCCCCC-CCCCCHHHHHHHHCCCCEEEE
T ss_conf 889998588578999999999839-9799995878889999999-99970--987311-357887789977466989996
Q ss_pred CCCHHHHH
Q ss_conf 22177766
Q gi|254781039|r 81 ATSSKGYG 88 (329)
Q Consensus 81 avps~~~~ 88 (329)
+.+ .+++
T Consensus 104 a~a-AGv~ 110 (194)
T cd01078 104 AGA-AGVE 110 (194)
T ss_pred CCH-HHHH
T ss_conf 427-7788
No 178
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.86 E-value=0.0014 Score=42.92 Aligned_cols=101 Identities=20% Similarity=0.337 Sum_probs=61.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC-CCCCC--CC--------CCCCCCEEEE-------E
Q ss_conf 79997788789999999997799818999449899999997789-84227--98--------8178743897-------3
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRI-NAKAL--PG--------IKLSPLLNFS-------S 67 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~-n~~~l--p~--------i~l~~~i~~t-------~ 67 (329)
||.|+|+|..|+.+|..|+..|..++++++.|.-....+++... +.... +. .++++.++++ .
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~~i~ivD~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~np~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 99999979899999999999379719999789875001464225898894922489999999856898389999456896
Q ss_pred --CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf --16877555544112217776665555332035685055237
Q gi|254781039|r 68 --DHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 68 --~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
..+.++++|+||-|+.+...+..+.+.... .+.+++.+.
T Consensus 81 ~~~~~~~~~~dvvi~~~D~~~~r~~l~~~~~~--~~ip~i~~~ 121 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKE--LGIPVIDAG 121 (143)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 46999975999999877999999999999998--699889963
No 179
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=96.85 E-value=0.0051 Score=39.33 Aligned_cols=118 Identities=22% Similarity=0.283 Sum_probs=67.8
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHCCC
Q ss_conf 7999778-878999999999779981-899944989999999778984227988178743897316-8775555441122
Q gi|254781039|r 6 TIFVIGA-GAFGTALSSVIASRGLAN-VTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDH-TLLQNADIVLFAT 82 (329)
Q Consensus 6 kI~ViGa-Ga~GtAlA~~La~~g~~~-V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~-~~l~~adiIiiav 82 (329)
||+|.|+ |.||.+++..+.+....+ |-...|.... .+.. .. ..+..+..+..+++. ....++|+||=-.
T Consensus 2 kV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~--~~~~---d~---~~~~~~~~~~~~~~~~~~~~~~DVvIDFS 73 (122)
T pfam01113 2 KVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSS--LLGS---DA---GELAGPLGVPVTDDLEEVLADADVLIDFT 73 (122)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCC--CCCC---CC---CCCCCCCCCEECCCHHHHCCCCCEEEEEC
T ss_conf 8999889887899999999858996899999438961--2254---31---00146787111244777515788899906
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCH
Q ss_conf 1777666555533203568505523752000258543101233210012100128881
Q gi|254781039|r 83 SSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGF 140 (329)
Q Consensus 83 ps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~ 140 (329)
.+..+.+.++... +.+.++|+.|=|+..+....+.++.+ ++.++-=|||
T Consensus 74 ~p~~~~~~~~~~~---~~~~~~ViGTTG~s~~~~~~i~~~a~------~ipi~~apNF 122 (122)
T pfam01113 74 TPEATLENLELAL---KHGKPLVIGTTGFTEEQLAELKEAAK------KIPIVIAPNF 122 (122)
T ss_pred CHHHHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHHHC------CCCEEECCCC
T ss_conf 8789999999999---67998899899999999999999844------5988982799
No 180
>PRK08328 hypothetical protein; Provisional
Probab=96.80 E-value=0.00066 Score=45.11 Aligned_cols=102 Identities=16% Similarity=0.331 Sum_probs=61.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC--------CCCCCCCC---CC-CCCCCEEEE-----
Q ss_conf 87799977887899999999977998189994498999999977--------89842279---88-178743897-----
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT--------RINAKALP---GI-KLSPLLNFS----- 66 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~--------~~n~~~lp---~i-~l~~~i~~t----- 66 (329)
-++|.|+|+|..|+.++..|+..|.-++++++.|.-....+++. +.++|-.- .+ .+++.+++.
T Consensus 27 ~s~VlvvG~GGlGs~~~~~La~~GvG~i~lvD~D~ve~SNLnRQil~~~~diG~~~K~~~a~~~l~~iNp~v~i~~~~~~ 106 (230)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGTVLLIDEQTPELSNLNRQILHWEEDVGKNPKPISAKWKLERFNSDIKIETFVGR 106 (230)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCEEECCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCEEEEHHHHH
T ss_conf 59789988787899999999984898689874878751563255403087747710399999999975995057526644
Q ss_pred --E-C-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf --3-1-687755554411221777666555533203568505523
Q gi|254781039|r 67 --S-D-HTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIIC 107 (329)
Q Consensus 67 --~-~-~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~ 107 (329)
. + .+.++++|+|+-|+-....+..+.+... +.+.|+|+.
T Consensus 107 i~~~n~~~ll~~~DlViD~tDn~~tr~~ln~~c~--~~~iPlI~g 149 (230)
T PRK08328 107 LTEENIDEVLKGVDVIVDCLDNFETRYLLDDYAH--KKGIPLVHG 149 (230)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH--HCCCCEEEE
T ss_conf 2377798620059899998899899999999999--839977999
No 181
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.78 E-value=0.0035 Score=40.43 Aligned_cols=96 Identities=22% Similarity=0.271 Sum_probs=63.3
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCC-CCEEEEE-CHHHHHHH
Q ss_conf 988877999778-8789999999997799--81899944989999999778984227988178-7438973-16877555
Q gi|254781039|r 1 MKNYSTIFVIGA-GAFGTALSSVIASRGL--ANVTLLGRKEILMQQLEDTRINAKALPGIKLS-PLLNFSS-DHTLLQNA 75 (329)
Q Consensus 1 M~~~~kI~ViGa-Ga~GtAlA~~La~~g~--~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~-~~i~~t~-~~~~l~~a 75 (329)
|++-.||+|+|| |.-|..|-..|++.++ .++.+++..... +.. +++. +++.+.+ +...+.++
T Consensus 1 M~~~~~VaIvGATG~VG~~li~lL~~~~~p~~~l~~laS~~sa-------Gk~------i~~~~~~l~v~~~~~~~~~~v 67 (336)
T PRK05671 1 MSQPLDIAVVGATGSVGEALVQVLEERDFPVGTLHLLASMESA-------GHS------VPFAGKNLRVREVDSFDFSQV 67 (336)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC-------CCE------EEECCCEEEEEECCCCCCCCC
T ss_conf 9988879999986499999999986369980269999876568-------987------546896789997882442459
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 5441122177766655553320356850552375200
Q gi|254781039|r 76 DIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 76 diIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
|++|+|.|+..-.++.... ...+..+|+.+.-+-
T Consensus 68 Dlvffa~~~~vs~~~a~~~---~~aG~~VID~Ss~fr 101 (336)
T PRK05671 68 KLAFFAAGAAVSRSFAEKA---LAAGCSVIDLSGALP 101 (336)
T ss_pred CEEEECCCHHHHHHHHHHH---HHCCCEEEECCCCCC
T ss_conf 8899868816679989999---976997995620133
No 182
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.78 E-value=0.0039 Score=40.11 Aligned_cols=26 Identities=4% Similarity=-0.058 Sum_probs=10.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 87755554411221777666555533
Q gi|254781039|r 70 TLLQNADIVLFATSSKGYGEALNFYS 95 (329)
Q Consensus 70 ~~l~~adiIiiavps~~~~~~l~~i~ 95 (329)
+.++++|.|++-...+.-+++++.++
T Consensus 41 ~~~~~~D~i~v~~~~~i~~~vl~~~~ 66 (332)
T PRK08605 41 EEVEGFDGLSLSQQIPLSEAIYKLLN 66 (332)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 98579988999707977999999666
No 183
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.75 E-value=0.0047 Score=39.53 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=19.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 7799977887899999999977998189994498999999
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQL 44 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i 44 (329)
+++.|+|+|.-+.|++..|.+.|..+++++.|+.+..+.+
T Consensus 128 ~~vlilGaGGaa~ai~~al~~~g~~~i~I~nR~~~r~~~l 167 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTLFDVDPARAQAL 167 (284)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf 7189965661689999999976999899997988999999
No 184
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.75 E-value=0.0061 Score=38.83 Aligned_cols=101 Identities=18% Similarity=0.278 Sum_probs=62.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC-CCCC--CC--------CCCCCCEEEEE------
Q ss_conf 7799977887899999999977998189994498999999977898-4227--98--------81787438973------
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRIN-AKAL--PG--------IKLSPLLNFSS------ 67 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n-~~~l--p~--------i~l~~~i~~t~------ 67 (329)
++|.|+|+|..|+.++..|+..|..++++.+.|.-....++++-.. +... |. -++++.++++.
T Consensus 22 s~VlvvG~GGLG~~v~~~La~aGvg~i~ivD~d~v~~snL~RQ~l~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~~~ 101 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDIS 101 (197)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 95999887889999999999837986999989918777739786032334788859999999997389972898704585
Q ss_pred --CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf --1687755554411221777666555533203568505523
Q gi|254781039|r 68 --DHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIIC 107 (329)
Q Consensus 68 --~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~ 107 (329)
+.+.++++|+|+-|......+..+++..- +.+.++|+.
T Consensus 102 ~~~~~~i~~~D~Vvd~~dn~~~r~~iN~~c~--~~~iplI~g 141 (197)
T cd01492 102 EKPEEFFSQFDVVVATELSRAELVKINELCR--KLGVKFYAT 141 (197)
T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHHHH--HCCCCEEEE
T ss_conf 7689998289999999999999999999999--819978999
No 185
>pfam10100 DUF2338 Uncharacterized protein conserved in bacteria (DUF2338). Members of this family of hypothetical bacterial proteins have no known function.
Probab=96.75 E-value=0.0028 Score=41.07 Aligned_cols=296 Identities=17% Similarity=0.233 Sum_probs=158.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHH----HHHCCCCCCCCCCC------CCCCCEE---EEEC-H
Q ss_conf 8779997788789999999997799818999449899999----99778984227988------1787438---9731-6
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQ----LEDTRINAKALPGI------KLSPLLN---FSSD-H 69 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~----i~~~~~n~~~lp~i------~l~~~i~---~t~~-~ 69 (329)
|+++.|+|+|.-+.-||..+...+.++|-+.+|+....+. +.+.. ..++-++ .+..+.. +..+ .
T Consensus 1 ~~~vLi~GtGPvaIQLAv~~~~~~~~~vgi~~R~S~rs~~f~e~l~~~~--~~~~~~vqn~~h~~~~G~~~id~~~~~~~ 78 (429)
T pfam10100 1 MSKVLILGTGPVAIQLAVDLKLHGDARLGIAGRPSTRSKRLFEALARTD--TLFLVGTQNEQHQQLEGKCTIDCFIKDYA 78 (429)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEHHHHHHHHHCCCEEHHHHHCCHH
T ss_conf 9736996377799999999985237455453275355799999997377--67986102245676447156245413798
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCC---EECCC--------
Q ss_conf 8775555441122177766655553320-35685055237520002585431012332100121---00128--------
Q gi|254781039|r 70 TLLQNADIVLFATSSKGYGEALNFYSNW-LKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSI---SVLSG-------- 137 (329)
Q Consensus 70 ~~l~~adiIiiavps~~~~~~l~~i~~~-l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~---~vlsG-------- 137 (329)
+...+.|.+|+|||+....+++++|..- |+.-+.+|.++--| +++.++...+++.-+...+ +---|
T Consensus 79 ~i~g~WdtlILavtaDaY~~VL~qi~~~~L~~vk~iILvSPt~--GS~~lv~~~l~~~~~~~eVISfStY~gdTr~~d~~ 156 (429)
T pfam10100 79 TIVGDWDTLILAVTADAYYDVLQQIPWETLKRVKCVILISPTF--GSNLLVQNFLNALNKDAEVISFSTYYGDTRWIDDE 156 (429)
T ss_pred HHCCCCCEEEEEEEHHHHHHHHHCCCHHHHHCCCEEEEECCCC--CHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCC
T ss_conf 8515133799995218789999707998870477799976664--40799999998559981699853003643100678
Q ss_pred -CCHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHCCCCEEEEECCCCCEEEEEEH--------HHHHHHHHHHHHHHH-
Q ss_conf -8817899876532124677317--8999999753411138997388614444000--------256778899752110-
Q gi|254781039|r 138 -PGFARDIAQGLPVGVILSSKNI--DISRRLSKILTTDSFRVYCSDDRIGVQIGGA--------LKNVIAIASGILKGR- 205 (329)
Q Consensus 138 -Ps~A~Eia~~~pt~~~ia~~d~--~~~~~i~~~~~~~~~~~~~s~D~~GvE~~ga--------lKNv~AIa~Gi~~gl- 205 (329)
|..+- -.+.---+=++|++. ....+++++|..-.+.+..-+-+.-+|--.. +=|=+++.+= .++-
T Consensus 157 ~~~~vl--TtavKkkiYlgSt~~~S~~~~~l~~~~~~~~I~~~~~~~pL~AE~rNislYVHpplfmndfsL~aI-F~~~~ 233 (429)
T pfam10100 157 QPNRVL--TTAVKKKLYLGSTHSGSAELSRLCAVFAQLGIELTPMESPLAAETRNISLYVHPPLFMNDFSLQAI-FEETK 233 (429)
T ss_pred CCCHHH--HHHHHCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCEEEECCHHHHHHHHHHHH-HCCCC
T ss_conf 873578--876422078547999967899999999875930698178777754263034267676425479998-58888
Q ss_pred ------C---CCCHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCHHHHHH------------
Q ss_conf ------0---380578999--99989999999987225445532002321015776447753006787------------
Q gi|254781039|r 206 ------G---CGDSARAIV--MVQGLSEIMKLTEAMNGRADTILRLSGVGDLILTATSEQSRNFCFGI------------ 262 (329)
Q Consensus 206 ------~---~g~N~~aal--~~~g~~Em~~l~~~~g~~~~t~~glaG~GDl~~T~~s~~SRN~~~G~------------ 262 (329)
+ -|.=|.+.+ |..=-.||+++...+|-.+-..+.+= .-|=+----...||+---..
T Consensus 234 ~~kYvYKlyPEGPIT~~lI~~M~~lw~E~m~ll~~l~v~~iNLLkFm-~dDnYPV~~eslsr~dIe~F~~l~~i~QeYLL 312 (429)
T pfam10100 234 VPKYVYKLYPEGPITPTLIREMRLLWKEMMRILNRLGVEPINLLRFM-VDDNYPVRPEMLSRRDIENFNNLPAIHQEYLL 312 (429)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH-CCCCCCCCHHHCCHHHHHHHHCCCHHHHHHHH
T ss_conf 86137842789997899999999999999999997499850178775-15888678354588888656427857766888
Q ss_pred ------HHHC--------CCCCC-----------HHC------CCEECHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf ------7508--------90702-----------572------960031999999999999828987159999999
Q gi|254781039|r 263 ------ALGR--------GEKQN-----------PDQ------IQLVEGAIAVSCVINISKKMGLKLPIFQAISDV 307 (329)
Q Consensus 263 ------~lg~--------g~~~~-----------~~~------~~~vEG~~~~~~i~~l~~~~~~~~Pi~~~v~~i 307 (329)
.|.. |.-.+ .+. .+--|-++-++.+..+++-+++.+|-.+..-+.
T Consensus 313 yVRYtslLIDPfS~PDe~GrYFDFSAVp~~~v~~d~~g~w~IPRmP~EDY~rl~iIq~ia~~l~v~~Ptid~~l~~ 388 (429)
T pfam10100 313 YVRYTALLIDPFSTPDEQGRYFDFSAVPFKRVYIDENGLWHIPRMPLEDYYRLAIIQAIAKALDVAMPTIDQLLQR 388 (429)
T ss_pred HHHHHHHEECCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 8875654017888878788640000351023357666756678886788899999999999838998169999999
No 186
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.74 E-value=0.0014 Score=43.06 Aligned_cols=130 Identities=22% Similarity=0.265 Sum_probs=68.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH---------------------HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88779997788789999999997799818999449899---------------------999997789842279881787
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL---------------------MQQLEDTRINAKALPGIKLSP 61 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~---------------------~~~i~~~~~n~~~lp~i~l~~ 61 (329)
+-+||+|||+|-=|.+-|..|++.| |+|++|.+.+.. ++.|.+. |+++.-
T Consensus 326 tGKkVAIIGsGPAGLsaA~~Lar~G-~~VTVFE~~~~~GGlL~yGIP~fRLpk~vv~~ei~~l~~l--------GV~f~~ 396 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLTRNG-VAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM--------GIHFEL 396 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHC--------CCEEEC
T ss_conf 8998999897789999999999769-7579952577788667524862227789999999999826--------988983
Q ss_pred CEEEEEC---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CEEECCCCCCCCCCCCC--CHHHHHH---HHHCCC
Q ss_conf 4389731---6877555544112217776665555332035685-05523752000258543--1012332---100121
Q gi|254781039|r 62 LLNFSSD---HTLLQNADIVLFATSSKGYGEALNFYSNWLKESA-EIIICSKGFEYNSGMLL--SSYSEKV---LPSHSI 132 (329)
Q Consensus 62 ~i~~t~~---~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~-~ii~~sKGi~~~t~~~~--se~i~~~---~~~~~~ 132 (329)
|..+..| .+..++.|-||+++=.+.-+.. .|. .++. -+.+..-=|...+...+ .+.-..- ....++
T Consensus 397 n~~VGkDitl~eL~~~yDAVfla~Ga~~~r~l--~Ip---Gedl~GV~~AleFL~~~~~~~~g~~~~~~~~~i~~~GK~V 471 (654)
T PRK12769 397 NCEVGKDISLESLLEDYDAVFVGVGTYRSMKA--GLP---NEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNV 471 (654)
T ss_pred CCEECCCCCHHHHHHCCCEEEEECCCCCCCCC--CCC---CCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 71768765899997369989995178878669--989---9778883878888999888651775556667655557558
Q ss_pred EECCCCCHHHHHHH
Q ss_conf 00128881789987
Q gi|254781039|r 133 SVLSGPGFARDIAQ 146 (329)
Q Consensus 133 ~vlsGPs~A~Eia~ 146 (329)
+|+.|-+.|.+.++
T Consensus 472 vVIGGGntAmDcaR 485 (654)
T PRK12769 472 VVLGGGDTAMDCVR 485 (654)
T ss_pred EEECCCHHHHHHHH
T ss_conf 99888724699999
No 187
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.70 E-value=0.0059 Score=38.91 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=31.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 887799977887899999999977998189994498
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
+-+||+|||+|-=|.+-|..|++.| |+|++|.+.+
T Consensus 142 ~gkkVAVIGsGPAGLsaA~~Lar~G-~~VtVfE~~~ 176 (472)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAG-HKVTVFERDD 176 (472)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
T ss_conf 8998999897789999999998669-7589972577
No 188
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.68 E-value=0.0048 Score=39.48 Aligned_cols=36 Identities=36% Similarity=0.471 Sum_probs=31.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 8877999778878999999999779981899944989
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
+-+||+|||+|.=|.|-|..|++.| |+|++|.+.+.
T Consensus 549 tgKKVAVIGsGPAGLaAA~~Lar~G-h~VTVFEk~~~ 584 (1032)
T PRK09853 549 SRHPVAVIGAGPAGLAAGYFLARAG-HPVTVFEREEN 584 (1032)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 8997999896889999999999779-93699815897
No 189
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.67 E-value=0.0033 Score=40.55 Aligned_cols=106 Identities=20% Similarity=0.353 Sum_probs=70.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCC---CCCC--------CCCCCCEEEE-------
Q ss_conf 779997788789999999997799818999449899999997789842---2798--------8178743897-------
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAK---ALPG--------IKLSPLLNFS------- 66 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~---~lp~--------i~l~~~i~~t------- 66 (329)
++|.|+|+|..|+..+..|+..|.-++.+++.|.-....+++.-.+.. ..|. ..+++.+++.
T Consensus 29 s~VlvvG~GGLG~~~~~yLa~aGvG~i~i~D~D~ve~sNL~RQ~l~~~~~iG~~K~~~a~~~l~~~np~i~i~~~~~~l~ 108 (355)
T PRK05597 29 AKVSVIGAGGLGSPALLYLAGAGVGHITIIDDDVVDLSNLHRQVIHTTAGVGTPKAESAREAMLALNPDVKVTVSVRRLD 108 (355)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHCC
T ss_conf 96899877766899999999849975999729992612133775654121797979999999998789974275332157
Q ss_pred --ECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC-CCCC
Q ss_conf --316877555544112217776665555332035685055237-5200
Q gi|254781039|r 67 --SDHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS-KGFE 112 (329)
Q Consensus 67 --~~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s-KGi~ 112 (329)
+..+.+++.|+|+=|+-....|..+....-. .++++|+.+ -|++
T Consensus 109 ~~na~~li~~~DvVvD~tDn~~tR~lind~c~~--~~~PlV~ga~~~~~ 155 (355)
T PRK05597 109 WSNALSELADADVILDGSDNFDTRHVASWAAAR--LGIPHVWASILGFD 155 (355)
T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH--HCCCEEEEECCCCE
T ss_conf 778997752887898767888899999999998--69987996524467
No 190
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.67 E-value=0.0045 Score=39.66 Aligned_cols=80 Identities=14% Similarity=0.305 Sum_probs=52.5
Q ss_pred CCCCEEEEECCCHHHHHHHHH-HH-HCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE--EC-HHHHH--H
Q ss_conf 888779997788789999999-99-779981899944989999999778984227988178743897--31-68775--5
Q gi|254781039|r 2 KNYSTIFVIGAGAFGTALSSV-IA-SRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS--SD-HTLLQ--N 74 (329)
Q Consensus 2 ~~~~kI~ViGaGa~GtAlA~~-La-~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t--~~-~~~l~--~ 74 (329)
.+|.|+.++|+|++|+||++. ++ +++..-|-.++.+++.+ - .+..+ +.+. ++ .+.++ +
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V---G-----------~~~~~-v~V~~~d~le~~v~~~d 146 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV---G-----------TKIGD-VPVYDLDDLEKFVKKND 146 (211)
T ss_pred CCCEEEEEECCCHHHHHHHCCCCHHHCCCEEEEEECCCHHHH---C-----------CCCCC-EEEECHHHHHHHHHHCC
T ss_conf 740348999057088898607423326935999961787883---7-----------52488-14552688888988617
Q ss_pred HHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 5544112217776665555332
Q gi|254781039|r 75 ADIVLFATSSKGYGEALNFYSN 96 (329)
Q Consensus 75 adiIiiavps~~~~~~l~~i~~ 96 (329)
.|+-+++||+..-.++++.+-+
T Consensus 147 v~iaiLtVPa~~AQ~vad~Lv~ 168 (211)
T COG2344 147 VEIAILTVPAEHAQEVADRLVK 168 (211)
T ss_pred CCEEEEECCHHHHHHHHHHHHH
T ss_conf 6189997348989999999998
No 191
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.66 E-value=0.016 Score=36.12 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=64.0
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE-ECHHHHHHHHHHH
Q ss_conf 877999778-87899999999977998--1899944989999999778984227988178743897-3168775555441
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGLA--NVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS-SDHTLLQNADIVL 79 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~--~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t-~~~~~l~~adiIi 79 (329)
|.||+|+|| |.-|..|-..|+++++. ++..++.++. .+..+.+ .+ ..+... -+.+.+.++|++|
T Consensus 2 m~kVaIvGATG~vG~eli~lL~~~~~p~~~i~~~aS~~s-------~G~~~~~-~~----~~~~~~~~~~~~~~~~Di~f 69 (348)
T PRK06598 2 MYNVGVVGATGMVGSVLLQMLEERDFPVIEPVFFASSRS-------GGKAPSF-GG----KTLLVDALDIEDLKGLDIAL 69 (348)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC-------CCCCCEE-CC----CEEEEEECCHHHHHCCCEEE
T ss_conf 847999898459999999999867999624999987566-------8987506-89----55478627855760799999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC--CCCCCCCCCHHHHHHH
Q ss_conf 12217776665555332035685055237520--0025854310123321
Q gi|254781039|r 80 FATSSKGYGEALNFYSNWLKESAEIIICSKGF--EYNSGMLLSSYSEKVL 127 (329)
Q Consensus 80 iavps~~~~~~l~~i~~~l~~~~~ii~~sKGi--~~~t~~~~se~i~~~~ 127 (329)
+|.|...-.++...+ .+.+..+|.++--+ +++--..++|+-.+.+
T Consensus 70 ~a~~~~~s~~~~~~~---~~~g~~VIDlSs~fR~~~~vplvvPEiN~~~i 116 (348)
T PRK06598 70 FSAGGDYSKEVAPKL---RAAGGVVIDNASALRMDPDVPLVVPEVNPDAI 116 (348)
T ss_pred ECCCCHHHHHHHHHH---HHCCCEEEECCHHHCCCCCCEEECCCCCHHHH
T ss_conf 868823568888999---75898999886431036884376462078999
No 192
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.66 E-value=0.0075 Score=38.25 Aligned_cols=90 Identities=24% Similarity=0.328 Sum_probs=55.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEE--EECCHH-HHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHH-HHH
Q ss_conf 988877999778878999999999779981899--944989-99999977898422798817874389731-6877-555
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTL--LGRKEI-LMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLL-QNA 75 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l--~~r~~~-~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l-~~a 75 (329)
|+ +||++||.|++|+.++..|.......+.+ +.|+.. ....+. ......++ .+.+ ..+
T Consensus 1 M~--~rVgiiG~GAIG~~Va~~l~~~~~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~lla~~p 63 (267)
T PRK13301 1 MT--HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA---------------GRVALLDGLPGLLAWRP 63 (267)
T ss_pred CC--EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHC---------------CCCCCCCCHHHHHCCCC
T ss_conf 95--17999851699999999986177765289998153355555532---------------56654577577741289
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 54411221777666555533203568505523752
Q gi|254781039|r 76 DIVLFATSSKGYGEALNFYSNWLKESAEIIICSKG 110 (329)
Q Consensus 76 diIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKG 110 (329)
|+|+-|-+.+.+++....+. ..+..++..|=|
T Consensus 64 DlVvE~As~~Av~~~a~~vL---~~G~dlvv~SvG 95 (267)
T PRK13301 64 DLVVEAAGQQAIAEHAEGCL---TAGLDMIICSAG 95 (267)
T ss_pred CEEEECCCHHHHHHHHHHHH---HCCCCEEEECHH
T ss_conf 99998979899999999999---759969998237
No 193
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.65 E-value=0.0035 Score=40.40 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=29.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 7799977887899999999977998189994498
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
+||.|||+|-.|++.|..|++.| ++|+++.|+.
T Consensus 1 m~VvIIGaGi~G~stA~~La~~G-~~V~vler~~ 33 (416)
T PRK00711 1 MRVVVLGSGVVGVTSAWYLARAG-HEVTVIDRQP 33 (416)
T ss_pred CEEEEECCHHHHHHHHHHHHHCC-CCEEEEECCC
T ss_conf 97999994499999999999689-9689996999
No 194
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0086 Score=37.84 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=69.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHC
Q ss_conf 88779997788789999999997-7998189994498999999977898422798817874389731-687755554411
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIAS-RGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLF 80 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~-~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIii 80 (329)
+....+|||+|..+-.....+.. ....+|++|+|+++..+.....=.. .++..+.+.++ .+++++||+|+-
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~-------~~~~~v~a~~s~~~av~~aDiIvt 201 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRK-------RGGEAVGAADSAEEAVEGADIVVT 201 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH-------HCCCCCEECCCHHHHHHCCCEEEE
T ss_conf 9857999888489999999999628961899976898999999999876-------338651323689988613998999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 221777666555533203568505523752000258543101233
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEK 125 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~ 125 (329)
++||.. .++ -..++++.+.|... -+--+....+-++++.+
T Consensus 202 ~T~s~~--Pil--~~~~l~~G~hI~ai-Gad~p~k~Eld~e~l~r 241 (330)
T COG2423 202 ATPSTE--PVL--KAEWLKPGTHINAI-GADAPGKRELDPEVLAR 241 (330)
T ss_pred ECCCCC--CEE--CHHHCCCCCEEEEC-CCCCCCCCCCCHHHHHH
T ss_conf 428998--762--38665897089703-78996524278999985
No 195
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.63 E-value=0.0043 Score=39.83 Aligned_cols=105 Identities=18% Similarity=0.330 Sum_probs=67.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC---CCCCC--CC--------CCCCCCEEEE-----
Q ss_conf 779997788789999999997799818999449899999997789---84227--98--------8178743897-----
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRI---NAKAL--PG--------IKLSPLLNFS----- 66 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~---n~~~l--p~--------i~l~~~i~~t----- 66 (329)
++|.|+|+|..|+.++..|+..|..++++.+.|.-....+++.-. +.... |. -++++++++.
T Consensus 20 s~VlVvG~GGLG~~v~~~La~aGVg~i~ivD~D~Ve~sNL~RQ~l~~~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~ 99 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED 99 (198)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 98999877889999999999749986999959963533577575026541116872999999999977999779998224
Q ss_pred ------ECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC-CCC
Q ss_conf ------316877555544112217776665555332035685055237-520
Q gi|254781039|r 67 ------SDHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS-KGF 111 (329)
Q Consensus 67 ------~~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s-KGi 111 (329)
+..+.+++.|+|+-|......+-.+.+.... .+.|+|+++ -|+
T Consensus 100 ~~~~~~n~~~~~~~~DlVvd~~dn~~~r~~in~~c~~--~~iPlI~ga~~G~ 149 (198)
T cd01485 100 SLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRK--HHIPFISCATYGL 149 (198)
T ss_pred CCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH--HCCCEEEEECCCC
T ss_conf 4577868999984899999999999999999999999--2998899974566
No 196
>KOG2653 consensus
Probab=96.62 E-value=0.0029 Score=40.93 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=94.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECH---HHHHHHHHHHCC
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316---877555544112
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDH---TLLQNADIVLFA 81 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~---~~l~~adiIiia 81 (329)
..|+.+|-+.||+-|+--.+++|+ .|..|.|....++..-.+..+ +.++ +-+.+.. ..++..-.|++-
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf-~v~~yNRT~skvD~flaneak-----~~~i---~ga~S~ed~v~klk~PR~iill 77 (487)
T KOG2653 7 ADIGLIGLAVMGQNLILNIADKGF-TVCAYNRTTSKVDEFLANEAK-----GTKI---IGAYSLEDFVSKLKKPRVIILL 77 (487)
T ss_pred CCEEEHHHHHHHHHHHCCCCCCCC-EEEEECCCHHHHHHHHHHHHC-----CCCC---CCCCCHHHHHHHCCCCCEEEEE
T ss_conf 410001166502455200104683-589864614768899986524-----9812---5868889999763787489999
Q ss_pred CCH-HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCC-CEECCCCCHHHHHHHHHHHHCCCCCCHH
Q ss_conf 217-77666555533203568505523752000258543101233210012-1001288817899876532124677317
Q gi|254781039|r 82 TSS-KGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHS-ISVLSGPGFARDIAQGLPVGVILSSKNI 159 (329)
Q Consensus 82 vps-~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~-~~vlsGPs~A~Eia~~~pt~~~ia~~d~ 159 (329)
|++ ..++.+++++.||+.++..||.--.--.++|.++.-| +...- +.+=+|-|=-+|=|+.-|+-+.=++ .
T Consensus 78 vkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e-----l~k~GilfvG~GVSGGEEGAR~GPSlMpGg~--~ 150 (487)
T KOG2653 78 VKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE-----LAKKGILFVGSGVSGGEEGARYGPSLMPGGS--K 150 (487)
T ss_pred EECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHH-----HHHCCCEEEECCCCCCCCCCCCCCCCCCCCC--H
T ss_conf 60798189999999864478988984886547643788999-----9966856984476676422224886688989--6
Q ss_pred HHHHHHHHHHCC
Q ss_conf 899999975341
Q gi|254781039|r 160 DISRRLSKILTT 171 (329)
Q Consensus 160 ~~~~~i~~~~~~ 171 (329)
+.-..++.+|+.
T Consensus 151 ~Awp~ik~ifq~ 162 (487)
T KOG2653 151 EAWPHIKDIFQK 162 (487)
T ss_pred HHHHHHHHHHHH
T ss_conf 787878999999
No 197
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.61 E-value=0.005 Score=39.38 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=49.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
+++.|+|||-.+.|++..|.+.|..+++++.|+.+..+.+.+.-.... +.+ ......+.+...++|+||=++|.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~----~~~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAV----EAAALADLEGLEEADLLINATPV 200 (283)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC--CCC----CCCCCCCCCCCCCCCEEEECCCC
T ss_conf 889998976899999999998699879999588899999999864505--631----10245541235545789978878
Q ss_pred H
Q ss_conf 7
Q gi|254781039|r 85 K 85 (329)
Q Consensus 85 ~ 85 (329)
.
T Consensus 201 G 201 (283)
T COG0169 201 G 201 (283)
T ss_pred C
T ss_conf 7
No 198
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.60 E-value=0.0092 Score=37.67 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=66.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH---------------------HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8877999778878999999999779981899944989---------------------9999997789842279881787
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI---------------------LMQQLEDTRINAKALPGIKLSP 61 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~---------------------~~~~i~~~~~n~~~lp~i~l~~ 61 (329)
+-+||+|||+|-=|.+-|..|++.| |+|++|.+.+. .++.|.+. |+++..
T Consensus 438 ~GkKVAVIGsGPAGLsaA~~La~~G-~~VtVFE~~~~~GG~L~yGIP~fRLPk~iv~~eI~~l~~l--------GV~~~~ 508 (760)
T PRK12778 438 NGIKVAVIGSGPAGLSFAGDMAKYG-YDVTVFEALHEIGGVLKYGIPEFRLPNKIVDVEIENLVKM--------GVTFEK 508 (760)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHC--------CCEEEC
T ss_conf 8998999897789999999999779-9069980588889757654861108789999999999864--------979989
Q ss_pred CEEEEEC--HHHHH--HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHH------HH-H---HH
Q ss_conf 4389731--68775--5554411221777666555533203568505523752000258543101------23-3---21
Q gi|254781039|r 62 LLNFSSD--HTLLQ--NADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSY------SE-K---VL 127 (329)
Q Consensus 62 ~i~~t~~--~~~l~--~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~------i~-~---~~ 127 (329)
|..+..+ .+.|. +.|-||+++=++.=+. + + + ++.. ..|+. ....++.++ -. . ..
T Consensus 509 n~~vGkdit~~eL~~egyDAVfla~Ga~~pr~-l----~-I-pGe~----l~gV~-~a~eFL~~vnl~~~~~~~~~~p~~ 576 (760)
T PRK12778 509 DCIVGKTISVEELEEEGFKGIFVASGAGLPNF-M----N-I-PGEN----SINIM-SSNEYLTRVNLMDAASPDSDTPVA 576 (760)
T ss_pred CCEECCCCCHHHHHHCCCCEEEEECCCCCCCC-C----C-C-CCCC----CCCCE-EHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 95778868999997588999999406787752-8----9-9-9866----77858-779999997644302666787422
Q ss_pred HHCCCEECCCCCHHHHHHHH
Q ss_conf 00121001288817899876
Q gi|254781039|r 128 PSHSISVLSGPGFARDIAQG 147 (329)
Q Consensus 128 ~~~~~~vlsGPs~A~Eia~~ 147 (329)
...+++|+.|-+.|.++++-
T Consensus 577 ~Gk~VvVIGGGntAmD~art 596 (760)
T PRK12778 577 FGKNVAVIGGGNTAMDSVRT 596 (760)
T ss_pred CCCEEEEECCCHHHHHHHHH
T ss_conf 69889999997609999999
No 199
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.59 E-value=0.0057 Score=39.02 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=31.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 877999778878999999999779981899944989
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
-+||+|||+|-=|.+-|..|++.| |+|++|.+.+.
T Consensus 537 gkKVAVIGsGPAGLaAA~~Lar~G-h~VTVFEk~~~ 571 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAG-HPVTVFEKKEK 571 (1012)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 988999897789999999999779-95699815897
No 200
>KOG2305 consensus
Probab=96.59 E-value=0.0043 Score=39.84 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=66.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHCCCCCCCCCCC-CCCCC---------EEEEE-C
Q ss_conf 988877999778878999999999779981899944989999-999778984227988-17874---------38973-1
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQ-QLEDTRINAKALPGI-KLSPL---------LNFSS-D 68 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~-~i~~~~~n~~~lp~i-~l~~~---------i~~t~-~ 68 (329)
|+ +.||+|+|+|-.|++-|..++..|+ +|.+|+..+..+. .+.+.+.+.+.|-.. -+..+ |..++ .
T Consensus 1 ms-~~ki~ivgSgl~g~~WAmlFAs~Gy-qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l 78 (313)
T KOG2305 1 MS-FGKIAIVGSGLVGSSWAMLFASSGY-QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSL 78 (313)
T ss_pred CC-CCCEEEEECCCCCCHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCH
T ss_conf 98-6504676232312259999860672-699762359999999999999999999721012676488888887088649
Q ss_pred HHHHHHHHHHHCCCCHHH--HHHHHHHHHHHCCCCCCEEEC
Q ss_conf 687755554411221777--666555533203568505523
Q gi|254781039|r 69 HTLLQNADIVLFATSSKG--YGEALNFYSNWLKESAEIIIC 107 (329)
Q Consensus 69 ~~~l~~adiIiiavps~~--~~~~l~~i~~~l~~~~~ii~~ 107 (329)
.+.+++|-.|--|+|-.- -.++.+++...+.+.+++-|-
T Consensus 79 ~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSS 119 (313)
T KOG2305 79 NELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASS 119 (313)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99986334688616576678999999998754886587226
No 201
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.59 E-value=0.0026 Score=41.28 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=47.5
Q ss_pred CEEEEECCCHHHH-HHHHHHHHC----CCCEEEEEECC-HHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHH
Q ss_conf 7799977887899-999999977----99818999449-8999999977898422798817874389731-687755554
Q gi|254781039|r 5 STIFVIGAGAFGT-ALSSVIASR----GLANVTLLGRK-EILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADI 77 (329)
Q Consensus 5 ~kI~ViGaGa~Gt-AlA~~La~~----g~~~V~l~~r~-~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adi 77 (329)
.||+|||||+.=| -+...+... ...++.|++.| ++..+.+..-- .++......+-.+.+|+| .+++++||+
T Consensus 1 mKI~iIGaGS~~tp~lv~~l~~~~~~l~~~ei~L~DID~~~rL~~~~~la--~~~~~~~~~~~~v~~ttd~~eAl~gADf 78 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALA--KRMVKKAGLPIKVHLTTDRREALEGADF 78 (419)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHH--HHHHHHHCCCEEEEEECCHHHHHCCCCE
T ss_conf 97999897466558999999845434898889998998599999999999--9999960998089996799998369999
Q ss_pred HHCCCCHHHHH
Q ss_conf 41122177766
Q gi|254781039|r 78 VLFATSSKGYG 88 (329)
Q Consensus 78 Iiiavps~~~~ 88 (329)
||.++-..+++
T Consensus 79 Vi~~irvGg~~ 89 (419)
T cd05296 79 VFTQIRVGGLE 89 (419)
T ss_pred EEEEEEECCCC
T ss_conf 99987337930
No 202
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.55 E-value=0.0099 Score=37.47 Aligned_cols=82 Identities=16% Similarity=0.317 Sum_probs=55.5
Q ss_pred CCCCEEEEECCCHHHHHHHHH--HHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHH--HH
Q ss_conf 888779997788789999999--9977998189994498999999977898422798817874389731-687755--55
Q gi|254781039|r 2 KNYSTIFVIGAGAFGTALSSV--IASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQN--AD 76 (329)
Q Consensus 2 ~~~~kI~ViGaGa~GtAlA~~--La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~--ad 76 (329)
.+..+++++|+|+.|+||+.. +.+.|..-|-+++.|++.+ +.. ..+++ +.-.++ .+.+++ .+
T Consensus 82 ~~~~~v~lvGaGnLG~AL~~y~gf~~~gf~Iva~FD~dp~ki------G~~---i~gi~----V~~i~~L~~~i~~~~i~ 148 (211)
T PRK05472 82 DKTTNVALVGAGNLGRALLNYNGFKKRGFKIVAAFDVDPEKV------GTK---IGGIP----VYHIDELEEVIKENDIE 148 (211)
T ss_pred CCCCEEEEECCCHHHHHHHHCCCHHHCCCEEEEEECCCHHHC------CCE---ECCEE----EECHHHHHHHHHHHCCC
T ss_conf 997508998887799999848762318978999974897885------988---38838----73499999999981993
Q ss_pred HHHCCCCHHHHHHHHHHHHH
Q ss_conf 44112217776665555332
Q gi|254781039|r 77 IVLFATSSKGYGEALNFYSN 96 (329)
Q Consensus 77 iIiiavps~~~~~~l~~i~~ 96 (329)
+-|+|||+..-.++++.+-.
T Consensus 149 iaIiaVP~~~AQ~vad~Lv~ 168 (211)
T PRK05472 149 IAILTVPAEAAQEVADRLVE 168 (211)
T ss_pred EEEEECCHHHHHHHHHHHHH
T ss_conf 89995576889999999998
No 203
>PRK11749 putative oxidoreductase; Provisional
Probab=96.52 E-value=0.012 Score=37.00 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=31.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 8877999778878999999999779981899944989
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
+-+||+|||+|-=|.+-|..|++.| |+|++|.+.+.
T Consensus 139 ~gkkVAIIGaGPAGLsAA~~Lar~G-~~VtVfE~~~~ 174 (460)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKG-YDVTIFEARDK 174 (460)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCC
T ss_conf 8998999896789999999999769-84799704787
No 204
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.48 E-value=0.0061 Score=38.83 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=58.6
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEE-EEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 7999778-8789999999997799818-9994498999999977898422798817874389731687755554411221
Q gi|254781039|r 6 TIFVIGA-GAFGTALSSVIASRGLANV-TLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 6 kI~ViGa-Ga~GtAlA~~La~~g~~~V-~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
||+|+|+ |.-|.-|-..|.+...-++ .+++.+...-+.+...+.+ +++.. ......+.....++|++|+|+|
T Consensus 1 kVaIvGatGyvG~eli~lL~~hp~~~~~~l~as~~~~G~~i~~~~~~---l~~~~---~~~~~~~~~~~~~~Dvvf~a~p 74 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPH---LKGEV---VLELEPEDFEELAVDIVFLALP 74 (122)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHCCC---CCCCC---CCEECCCCCCCCCCCEEEECCC
T ss_conf 98998945199999999998589974577774046589757885966---45773---5056533110017999999388
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 7776665555332035685055237520
Q gi|254781039|r 84 SKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 84 s~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
...-.++.+.+..+.+.+.++|.++--+
T Consensus 75 ~~~s~~~~~~~~~~~~~g~~VIDlSadf 102 (122)
T smart00859 75 HGVSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCHHH
T ss_conf 2788999998898875698798684775
No 205
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.48 E-value=0.0061 Score=38.81 Aligned_cols=164 Identities=20% Similarity=0.172 Sum_probs=80.5
Q ss_pred CEEEEECCCHHHHH-HHHHHHHC----CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHH
Q ss_conf 77999778878999-99999977----998189994498999999977898422798817874389731-6877555544
Q gi|254781039|r 5 STIFVIGAGAFGTA-LSSVIASR----GLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIV 78 (329)
Q Consensus 5 ~kI~ViGaGa~GtA-lA~~La~~----g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiI 78 (329)
+||+|||||+-=|. +..-|... ...+|.|++.|++..+.+..-- .++......+-.+..|+| .+++++||+|
T Consensus 1 mKI~iIGaGS~~t~~li~~l~~~~~~l~~~ei~L~DId~~rL~~~~~la--~~~~~~~g~~~~i~~ttdr~eAL~gADfV 78 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAV--KILFKENYPEIKFVYTTDPEEAFTDADFV 78 (437)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHH--HHHHHHHCCCEEEEEECCHHHHHCCCCEE
T ss_conf 9699989846877999999982820069888999779999999999999--99998529981799967999985799999
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCEEE-CCC---CCCCCCCCCCC---HH---HHHHHHHCCCEECCCCCHHHHHHH-H
Q ss_conf 1122177766655553320356850552-375---20002585431---01---233210012100128881789987-6
Q gi|254781039|r 79 LFATSSKGYGEALNFYSNWLKESAEIII-CSK---GFEYNSGMLLS---SY---SEKVLPSHSISVLSGPGFARDIAQ-G 147 (329)
Q Consensus 79 iiavps~~~~~~l~~i~~~l~~~~~ii~-~sK---Gi~~~t~~~~s---e~---i~~~~~~~~~~vlsGPs~A~Eia~-~ 147 (329)
|..+-..+++......+--++-+ ++- -|- ||- ...++++ |+ +++.-|+--+-=.+.|+.----+- .
T Consensus 79 i~~irvGg~~~r~~De~Ip~kyG--ivgqeT~G~GGi~-~alRtiPv~ldia~di~e~cP~AwliNytNP~~~vt~al~~ 155 (437)
T cd05298 79 FAQIRVGGYAMREQDEKIPLKHG--VVGQETCGPGGFA-YGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRR 155 (437)
T ss_pred EEEEEECCCHHHHHHHHHHHHCC--CCCCCCCCCCHHH-EEEEEHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
T ss_conf 99665268326788876798759--7760156646224-01144999999999999879992899757878999999997
Q ss_pred H-HHHCCCC-CCHH-HHHHHHHHHHCCCC
Q ss_conf 5-3212467-7317-89999997534111
Q gi|254781039|r 148 L-PVGVILS-SKNI-DISRRLSKILTTDS 173 (329)
Q Consensus 148 ~-pt~~~ia-~~d~-~~~~~i~~~~~~~~ 173 (329)
. |..=+++ |... ...+.+++.+.-+.
T Consensus 156 ~~~~~k~vGLCh~~~~~~~~la~~Lg~~~ 184 (437)
T cd05298 156 LFPNARILNICDMPIAIMDSMAAILGLDR 184 (437)
T ss_pred HCCCCCEEEECCCHHHHHHHHHHHHCCCH
T ss_conf 48999889889788999999999958988
No 206
>PRK07411 hypothetical protein; Validated
Probab=96.47 E-value=0.0043 Score=39.82 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=68.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCC---CCC--------CCCCCCEEE-------E
Q ss_conf 7799977887899999999977998189994498999999977898422---798--------817874389-------7
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKA---LPG--------IKLSPLLNF-------S 66 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~---lp~--------i~l~~~i~~-------t 66 (329)
++|.|+|+|..|+..+..|+..|.-++.|++.|.-....+++.-.+..- .|. ..+++.+++ +
T Consensus 39 a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~ve~sNL~RQ~l~~~~~vG~~K~~~a~~~l~~lnp~~~i~~~~~~l~ 118 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDIVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLS 118 (390)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCEEHHHHCC
T ss_conf 97899888723799999999838975999748994623478543666200797189999999998689864210343255
Q ss_pred --ECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCC-CCC
Q ss_conf --3168775555441122177766655553320356850552375-200
Q gi|254781039|r 67 --SDHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSK-GFE 112 (329)
Q Consensus 67 --~~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sK-Gi~ 112 (329)
+..+.+++.|+|+=|+-....|..+....-. .++++|+.+- |++
T Consensus 119 ~~na~~li~~~DvvvD~tDNf~tRylindac~~--~~~PlV~ga~~~~~ 165 (390)
T PRK07411 119 SENALDILAPYDVVVDGTDNFPTRYLVNDACVL--LNKPNVYGSIFRFE 165 (390)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH--HCCCEEEEECCCCE
T ss_conf 524887422886899678888999998999999--69987997647778
No 207
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=96.47 E-value=0.0022 Score=41.67 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=68.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCC-------C----------CCCCCCCC-CCEEEE
Q ss_conf 77999778878999999999779981899944989999999778984-------2----------27988178-743897
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINA-------K----------ALPGIKLS-PLLNFS 66 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~-------~----------~lp~i~l~-~~i~~t 66 (329)
++|.|+|+|..|+..+..|+..|.-++.+++.|.-....+++.-.+. | .-|++++. .+..++
T Consensus 43 a~VlvvG~GGLG~~~~~yLaaaGvG~i~ivD~D~v~~sNL~RQil~~~~dvG~~K~~~a~~~l~~~Np~v~v~~~~~~l~ 122 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTIGIVEFDVVDESNLQRQIIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLE 122 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHCCC
T ss_conf 97899878757899999999828975999878996745577200568433587079999999998789853121131378
Q ss_pred --ECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCC-CCC
Q ss_conf --3168775555441122177766655553320356850552375-200
Q gi|254781039|r 67 --SDHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSK-GFE 112 (329)
Q Consensus 67 --~~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sK-Gi~ 112 (329)
+..+.+++.|+|+=|+.....|..+....-. .++++|+.+- |++
T Consensus 123 ~~n~~~li~~~DvViD~tDN~~tR~lindac~~--~~~PlV~ga~~~~~ 169 (392)
T PRK07878 123 PSNAVDLFAQYDLILDGTDNFATRYLVNDAAVL--AGKPYVWGSIYRFE 169 (392)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH--HCCCEEEEEECCCE
T ss_conf 889876431776898668998999999999999--69987997605758
No 208
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.46 E-value=0.01 Score=37.42 Aligned_cols=96 Identities=18% Similarity=0.369 Sum_probs=58.0
Q ss_pred CCCEEEEECCCHHHHHHHHH-HHHC-CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHH
Q ss_conf 88779997788789999999-9977-998189994498999999977898422798817874389731-68775555441
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSV-IASR-GLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVL 79 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~-La~~-g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIi 79 (329)
+-+.++|||+|..+-.-... ++.. ...+|++|+|+++..+.+.+.- ... +|.. .++.+.++ .++++++|+|+
T Consensus 154 da~~lgiIG~G~qAr~~l~Al~~vrp~i~~V~V~~r~~~~a~~fa~~~-~~~-~~~~---~~v~~~~s~eeav~~aDIVv 228 (379)
T PRK06199 154 DAKVVGLVGPGVMGKTIVAAFMAVCPGIDTIKIKGRSQKSLDAFATWV-AET-YPQI---TEVVVVDSEEEVVRGSDIVT 228 (379)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH-HHH-CCCC---CEEEEECCHHHHHHCCCEEE
T ss_conf 997899989639999999999986178888999889999999999999-976-6888---50898299999973799999
Q ss_pred CCCCHHHH----HHHHHHHHHHCCCCCCEE
Q ss_conf 12217776----665555332035685055
Q gi|254781039|r 80 FATSSKGY----GEALNFYSNWLKESAEII 105 (329)
Q Consensus 80 iavps~~~----~~~l~~i~~~l~~~~~ii 105 (329)
.|+.+..- .-+++ ..++++++.|.
T Consensus 229 taTs~~~~~ps~~P~~~--~~wlkpGahv~ 256 (379)
T PRK06199 229 YCTSGEAGDPSAYPYVK--REWVKPGAFLL 256 (379)
T ss_pred ECCCCCCCCCCCCCEEC--HHHCCCCCEEE
T ss_conf 77778877777784745--99959998894
No 209
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.46 E-value=0.0082 Score=37.98 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=36.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC
Q ss_conf 877999778878999999999779981899944989999999778
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR 48 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~ 48 (329)
-++|.|+|.|-=|.|.|..|.+.| .+|.+|+.++.......+.+
T Consensus 12 Gk~V~V~GlG~sG~a~a~~L~~~G-~~v~~~D~~~~~~~~~~~~~ 55 (487)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFG-ARPTVCDDDPDALRPHAERG 55 (487)
T ss_pred CCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHCC
T ss_conf 898999915683899999999786-97999989825779998659
No 210
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=96.46 E-value=0.0034 Score=40.45 Aligned_cols=138 Identities=20% Similarity=0.309 Sum_probs=85.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH-------------HHHHHHCCCCCCCCCCCCCCCCEEEEEC-
Q ss_conf 88779997788789999999997799818999449899-------------9999977898422798817874389731-
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL-------------MQQLEDTRINAKALPGIKLSPLLNFSSD- 68 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~-------------~~~i~~~~~n~~~lp~i~l~~~i~~t~~- 68 (329)
+-+||+|||||-=|.|-|-+|+++|. +|.+|+|.+++ -+.+-..|.+.-.-=||.|.=|..+-.|
T Consensus 142 ~g~rVAviGAGPAGLaCAD~L~RaGV-~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~Rr~if~~MGi~F~Ln~EvGrD~ 220 (480)
T TIGR01318 142 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFKLNTEVGRDI 220 (480)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECCC
T ss_conf 78278997788602579998751785-59997477030760136888511027899999999975892786581650325
Q ss_pred --HHHHHHHHHHHCCCCHH----------HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHH----HHHCCC
Q ss_conf --68775555441122177----------76665555332035685055237520002585431012332----100121
Q gi|254781039|r 69 --HTLLQNADIVLFATSSK----------GYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKV----LPSHSI 132 (329)
Q Consensus 69 --~~~l~~adiIiiavps~----------~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~----~~~~~~ 132 (329)
.+.+++.|-||+.|=+. ....|++- .|||-.|+..+. |++ +-++.+.-+-.+. +...++
T Consensus 221 ~l~~LLe~YDAVFlGvGTY~~~~ggLP~eDa~GV~~A-LPFLianTr~lm---Gl~-eyGrPiaGw~~~~P~~~~~Gk~V 295 (480)
T TIGR01318 221 SLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLKA-LPFLIANTRQLM---GLP-EYGRPIAGWEPEEPLIDVEGKRV 295 (480)
T ss_pred CHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHH-HHHHHHCCCEEC---CCC-CCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 5544431148489611433431287788774216664-247766152123---788-87774467776677423477668
Q ss_pred EECCCCCHHHHHHH
Q ss_conf 00128881789987
Q gi|254781039|r 133 SVLSGPGFARDIAQ 146 (329)
Q Consensus 133 ~vlsGPs~A~Eia~ 146 (329)
+||.|==.|.|..+
T Consensus 296 VVLGGGDTaMDCvR 309 (480)
T TIGR01318 296 VVLGGGDTAMDCVR 309 (480)
T ss_pred EEECCCCCHHHHHH
T ss_conf 98588875257889
No 211
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.42 E-value=0.013 Score=36.75 Aligned_cols=96 Identities=21% Similarity=0.280 Sum_probs=62.9
Q ss_pred CCCC-CEEEEECC-CHHHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE-CHHHHHH
Q ss_conf 9888-77999778-8789999999997799---818999449899999997789842279881787438973-1687755
Q gi|254781039|r 1 MKNY-STIFVIGA-GAFGTALSSVIASRGL---ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS-DHTLLQN 74 (329)
Q Consensus 1 M~~~-~kI~ViGa-Ga~GtAlA~~La~~g~---~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~-~~~~l~~ 74 (329)
|+.. -||+|+|| |.-|..|-..|++.-+ .++++++.+... +....+ .+ ..+.+.+ +.+.+.+
T Consensus 1 m~~k~~nVaIvGATG~VG~~li~lL~~h~~f~v~~v~~~aS~~sa-------Gk~v~~-~~----~~~~v~~~~~~~~~~ 68 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSA-------GKTVQF-KG----REIIIQEAKINSFEG 68 (347)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCC-------CCCEEE-CC----CEEEEEECCHHHHHC
T ss_conf 998887799998803999999999972789875107998658779-------976268-99----278998578446516
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 5544112217776665555332035685055237520
Q gi|254781039|r 75 ADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 75 adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
+|++|+|+|+..-+++.++. .+.+..+|+.+.-+
T Consensus 69 ~Divf~a~~~~~s~~~~~~~---~~~G~~VID~Ssa~ 102 (347)
T PRK06728 69 VDIAFFSAGGEVSRQFVNQA---VSSGAIVIDNTSEY 102 (347)
T ss_pred CCEEEECCCHHHHHHHHHHH---HHCCCEEEECCHHH
T ss_conf 97899768578899999999---85896999897565
No 212
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.42 E-value=0.0035 Score=40.41 Aligned_cols=107 Identities=19% Similarity=0.295 Sum_probs=70.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCC-C--CCCC--------CCCCCCEEEEE-----
Q ss_conf 877999778878999999999779981899944989999999778984-2--2798--------81787438973-----
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINA-K--ALPG--------IKLSPLLNFSS----- 67 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~-~--~lp~--------i~l~~~i~~t~----- 67 (329)
-++|.|+|+|..|+..+..|+..|.-++.|++.|.-....+++.-.+. . -.|. ..+++.+++..
T Consensus 41 ~a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~Ve~sNL~RQil~~~~diG~~K~~~A~~~l~~lNp~i~i~~~~~~l 120 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERL 120 (370)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEHHHHC
T ss_conf 19789988875789999999982897489873898260210555426976669757999999999878997157356646
Q ss_pred ----CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC-CCCC
Q ss_conf ----16877555544112217776665555332035685055237-5200
Q gi|254781039|r 68 ----DHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS-KGFE 112 (329)
Q Consensus 68 ----~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s-KGi~ 112 (329)
..+.+++.|+|+=|+-.+..|..+....-. .++++|+.+ -|++
T Consensus 121 ~~~n~~~li~~~DvVvD~tDNf~tRylindaC~~--~~~PlV~ga~~~~e 168 (370)
T PRK05600 121 TAENAVELLNGVDLVLDGSDSFATKFLVADAAEI--TGTPLVWGTVLRFH 168 (370)
T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH--HCCCEEEEEECCCE
T ss_conf 9999998763687899778887999999999998--49976984532628
No 213
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.41 E-value=0.0056 Score=39.08 Aligned_cols=104 Identities=14% Similarity=0.235 Sum_probs=63.5
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC----C--EEEEEECCHH--HHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHH
Q ss_conf 7799977-88789999999997799----8--1899944989--99999977898422798817874389731-687755
Q gi|254781039|r 5 STIFVIG-AGAFGTALSSVIASRGL----A--NVTLLGRKEI--LMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQN 74 (329)
Q Consensus 5 ~kI~ViG-aGa~GtAlA~~La~~g~----~--~V~l~~r~~~--~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~ 74 (329)
.||+|+| +|..|..|+..|+.... . .+.|++..+. ..+.+.-+-.+. .+++-.++..+++ .+++++
T Consensus 3 ~kV~VtGAaG~Ig~~l~~~la~g~~~g~~~~i~L~L~Di~~~~~~l~Gv~mel~d~----a~p~l~~i~~~~~~~~a~~~ 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDC----AFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHC----CCCCCCCEEECCCHHHHHCC
T ss_conf 19999888718899999999758856899705999966778677655267457437----86455873522887898368
Q ss_pred HHHHHCCC--C--------------HHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 55441122--1--------------77766655553320356850552375200
Q gi|254781039|r 75 ADIVLFAT--S--------------SKGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 75 adiIiiav--p--------------s~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
+|++|+.- | ..-++++.+.|.+|-+++..++.+++-.+
T Consensus 79 aDvvii~ag~prkpGmtR~DLl~~Na~I~k~~~~~I~~~a~p~~~viVv~NPvn 132 (325)
T cd01336 79 VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN 132 (325)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH
T ss_conf 878999488779999827999998999999999999986145819999279358
No 214
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.41 E-value=0.0091 Score=37.68 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=21.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 55554411221777666555533203568505523
Q gi|254781039|r 73 QNADIVLFATSSKGYGEALNFYSNWLKESAEIIIC 107 (329)
Q Consensus 73 ~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~ 107 (329)
.++|++=+++-+..+.+.++-+.-.-....++|..
T Consensus 128 ~~aDivKia~~A~~~~D~~~l~~~~~~~~~p~Iai 162 (477)
T PRK09310 128 SQADYYKIAVSSTSSTDLLNIIQQKRSLPENTTVL 162 (477)
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 07998999840387778999999997289986999
No 215
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.38 E-value=0.005 Score=39.40 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=51.2
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 77999778-87899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
++|.|+|| |.-|..+...|.+.| |+|+...|+++....+...+....+ -++. ...+..++++++|.+|.+.+
T Consensus 1 M~ILV~GATG~lGr~vVr~Ll~~G-~~Vr~lvRnp~ka~~l~~~Gve~v~-gDl~-----dpesl~~Al~GvdaVi~~~~ 73 (319)
T CHL00194 1 MSLLVIGATGTLGRQIVRRALDEG-YQVKCLVRNLRKAAFLKEWGAELVY-GDLS-----LPETIPPALEGITAIIDAST 73 (319)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHCCCEEEE-ECCC-----CHHHHHHHHCCCCEEEEECC
T ss_conf 979998998589999999999688-9089995786763234215967999-4278-----87789999659967999456
Q ss_pred H
Q ss_conf 7
Q gi|254781039|r 84 S 84 (329)
Q Consensus 84 s 84 (329)
+
T Consensus 74 ~ 74 (319)
T CHL00194 74 S 74 (319)
T ss_pred C
T ss_conf 6
No 216
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR000706 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (AGPR) , is the enzyme that catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38 kD (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (2.7.2.8 from EC) domain and a C-terminal AGPR domain. In the Escherichia coli enzyme, a cysteine has been shown to be implicated in the catalytic activity, and the region around this residue is well conserved.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process.
Probab=96.29 E-value=0.0088 Score=37.80 Aligned_cols=101 Identities=22% Similarity=0.260 Sum_probs=64.3
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEE-EEECCHH-HHHHHHHCCCCCCCCCCCCCCCCEEEEEC---HHHH-HHHHH
Q ss_conf 77999778-87899999999977998189-9944989-99999977898422798817874389731---6877-55554
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVT-LLGRKEI-LMQQLEDTRINAKALPGIKLSPLLNFSSD---HTLL-QNADI 77 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~-l~~r~~~-~~~~i~~~~~n~~~lp~i~l~~~i~~t~~---~~~l-~~adi 77 (329)
.||+|||| |.=|.=|-..|...-.-+|. ++++.+. .-+.+.+-+-|-+ +..-..++...++ .+.. +++|+
T Consensus 1 ~~V~IvGAsGYtG~EL~RLL~~HP~~e~~~~~ss~~~~aG~~~~~~~P~L~---g~~~~~~~~~~~~~~~~~~~L~~~Dv 77 (361)
T TIGR01850 1 IKVGIVGASGYTGGELLRLLANHPEVEITYLVSSRESLAGKPLSEVHPHLR---GLVDYLNLEPLDDAKLEEIELEDADV 77 (361)
T ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEEEEEHHCCCCHHHHCCCHH---HHHCCCCCCCCCHHHHHHHHHCCCCE
T ss_conf 968999334446899999984199537888887620113852577366111---01002333666766788862137678
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 4112217776665555332035685055237520
Q gi|254781039|r 78 VLFATSSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 78 Iiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
||+|+|...-.+... +++..+..||.+|-=|
T Consensus 78 VFlAlPhgvs~~~~p---~~l~~g~~ViDLSADF 108 (361)
T TIGR01850 78 VFLALPHGVSMELAP---ELLEAGVKVIDLSADF 108 (361)
T ss_pred EEECCCHHHHHHHHH---HHHHCCCEEEECCCCC
T ss_conf 998687255699999---9984798699888343
No 217
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=96.28 E-value=0.01 Score=37.36 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=65.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEE--EECHHHHHHHHHHHCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389--7316877555544112
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF--SSDHTLLQNADIVLFA 81 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~--t~~~~~l~~adiIiia 81 (329)
-.++.|+|+|.-|+.=+..+..-| .+|+.++++.+..+++++..-.. +.. .+.. ....+.+.++|++|-+
T Consensus 20 pa~vvViG~Gv~G~~A~~~A~~lG-a~V~v~D~~~~~l~~~~~~~~~~-----v~~--~~~~~~~~l~~~i~~aDvvIga 91 (150)
T pfam01262 20 PAKVVVIGGGVVGLGAAATAKGLG-APVTILDVRPERLEQLDSLFAEF-----VET--DIFSNCEYLAEAIAEADLVIGT 91 (150)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCC-----CCC--HHHCCHHHHHHHHHHCCEEEEE
T ss_conf 777999898789999999998679-98999729999999999864762-----001--6653799999997438799972
Q ss_pred CCHHH--H-HHHHHHHHHHCCCCCCEEECC
Q ss_conf 21777--6-665555332035685055237
Q gi|254781039|r 82 TSSKG--Y-GEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 82 vps~~--~-~~~l~~i~~~l~~~~~ii~~s 108 (329)
+-..+ - .-+.++....++++..|+.++
T Consensus 92 vl~pg~~aP~lIt~~mv~~MkpGsVIVDva 121 (150)
T pfam01262 92 VLIPGARAPKLVTREMVKTMKPGSVIVDVA 121 (150)
T ss_pred EECCCCCCCCEECHHHHHHHCCCCEEEEEE
T ss_conf 031788699220799998447993999962
No 218
>PRK07236 hypothetical protein; Provisional
Probab=96.26 E-value=0.0077 Score=38.15 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=32.3
Q ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 9888--7799977887899999999977998189994498
Q gi|254781039|r 1 MKNY--STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 1 M~~~--~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|+.| .||.|+|+|-=|.++|..|.+.| ++|++|.|.+
T Consensus 1 ~~~~~~~kV~IVGaGiaGL~~A~~L~~~G-~~v~v~Er~~ 39 (386)
T PRK07236 1 MTHMSKPRAVVVGGSLGGLFAANLLRRAG-WDVDVFERSP 39 (386)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEECCCC
T ss_conf 99899996899993689999999998589-9989986899
No 219
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.25 E-value=0.009 Score=37.71 Aligned_cols=29 Identities=7% Similarity=0.053 Sum_probs=14.3
Q ss_pred CCCCHHHHHHH--HHHCCCCHHHHHHHHHCC
Q ss_conf 98715999999--980789989999998488
Q gi|254781039|r 296 LKLPIFQAISD--VMMNHISVDEALSILLNH 324 (329)
Q Consensus 296 ~~~Pi~~~v~~--il~~~~~~~~~i~~L~~~ 324 (329)
++|=+.+++.+ +-.++.-|.|.|+.-++.
T Consensus 256 l~MLv~Qa~~~f~lwTG~~~p~e~mr~~l~~ 286 (288)
T PRK12749 256 YGMLLWQGAEQFTLWTGKDFPLEYVKQVMGF 286 (288)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 9999999999999981999999999998644
No 220
>KOG1495 consensus
Probab=96.21 E-value=0.022 Score=35.16 Aligned_cols=102 Identities=18% Similarity=0.282 Sum_probs=65.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHH--HHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHC
Q ss_conf 8779997788789999999997799-81899944989999--99977898422798817874389731687755554411
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQ--QLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLF 80 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~--~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIii 80 (329)
..||+|+|+|+.|.|.|..+..+|. .+..|.+-+++..+ .+.-+|-. .+++ .+++.+..|...-.+++++|+
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s-~f~~----~~~V~~~~Dy~~sa~S~lvIi 94 (332)
T KOG1495 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGS-AFLS----TPNVVASKDYSVSANSKLVII 94 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHCCCC-CCCC----CCCEEECCCCCCCCCCCEEEE
T ss_conf 74489982464889999999975033406988627203321254000233-0026----883676676323479868999
Q ss_pred CCCH----------------HHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 2217----------------776665555332035685055237520
Q gi|254781039|r 81 ATSS----------------KGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 81 avps----------------~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
..-+ .-|+..+.++-+| .++..++.++.-.
T Consensus 95 TAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPV 140 (332)
T KOG1495 95 TAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPV 140 (332)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCH
T ss_conf 567778987178999998899999987888504-8870899965803
No 221
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=96.15 E-value=0.0044 Score=39.74 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=52.3
Q ss_pred EEEEECCCHHHHHHHHH---HHHC--CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHH
Q ss_conf 79997788789999999---9977--998189994498999999977898422798817874389731-68775555441
Q gi|254781039|r 6 TIFVIGAGAFGTALSSV---IASR--GLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVL 79 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~---La~~--g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIi 79 (329)
||+|||+|+..+..-.. +... ...++.|++.|++..+.+..--. ++......+-.+..|+| .+++++||+||
T Consensus 1 KI~iIGaGS~~~~~~~~~d~~~~~~l~~~ei~L~DId~~rL~~~~~l~~--~~~~~~~~~~~v~~ttd~~eAl~gADfVi 78 (183)
T pfam02056 1 KIVIIGGGSTITPKNLLGDLDHTEELPGRELALYDIDEERLDAIQTACK--KLVDEAGPDIKFEKTTDRKEALTDADFVI 78 (183)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHH--HHHHHCCCCEEEEEECCHHHHHCCCCEEE
T ss_conf 9899998544439999999960856898999997799999999999999--99996199839999789999966899999
Q ss_pred CCCCHHHHHHH
Q ss_conf 12217776665
Q gi|254781039|r 80 FATSSKGYGEA 90 (329)
Q Consensus 80 iavps~~~~~~ 90 (329)
..+-..+.+..
T Consensus 79 ~~irvG~~~~r 89 (183)
T pfam02056 79 NAIRVGLLPAR 89 (183)
T ss_pred EEEEECCCHHH
T ss_conf 98640771488
No 222
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.15 E-value=0.0097 Score=37.53 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=34.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 988877999778878999999999779981899944989
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
|+...+|.|+|+|-=|.++|..|.+.| ++|+++.+.++
T Consensus 1 M~~~~~V~IVGaGiaGL~lA~~L~r~G-i~v~V~Er~~~ 38 (396)
T PRK08163 1 MTHVTPVLIVGGGIGGLAAALALARQG-IKVKLLEQAAE 38 (396)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CCEEEECCCCC
T ss_conf 989984999897889999999999789-99999917998
No 223
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.14 E-value=0.013 Score=36.60 Aligned_cols=100 Identities=22% Similarity=0.281 Sum_probs=59.6
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE-CHH--HHHHHHHH
Q ss_conf 8877999778-8789999999997799818999449899999997789842279881787438973-168--77555544
Q gi|254781039|r 3 NYSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS-DHT--LLQNADIV 78 (329)
Q Consensus 3 ~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~-~~~--~l~~adiI 78 (329)
+|.||+|+|+ |.-|.-|-..|+..-.-++.++..++..-+.+.+.+-|.+.+.+ +.+.. +.+ ...++|++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~------l~~~~~~~~~~~~~~~Dvv 74 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVD------LPFQTIDPEKIELDECDVV 74 (349)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECHHHCCCCHHHHCCCCCCCCC------CCCCCCCHHHHHCCCCCEE
T ss_conf 9815999778877489999998659973799963166458706875824235345------5433577455301568889
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 112217776665555332035685055237520
Q gi|254781039|r 79 LFATSSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 79 iiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
|+|+|...-.+...++. ..+..||.++--+
T Consensus 75 FlalPhg~s~~~v~~l~---~~g~~VIDLSadf 104 (349)
T COG0002 75 FLALPHGVSAELVPELL---EAGCKVIDLSADF 104 (349)
T ss_pred EEECCCHHHHHHHHHHH---HCCCEEEECCCCC
T ss_conf 99068636889899997---4799499887320
No 224
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=96.07 E-value=0.011 Score=37.18 Aligned_cols=36 Identities=36% Similarity=0.451 Sum_probs=31.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 8779997788789999999997799818999449899
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL 40 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~ 40 (329)
.++|+|||||--|.++|..|++.| ++|+++.+++..
T Consensus 256 ~~~VaVIGAGIAGas~A~~LA~rG-~~VtVlDr~~~~ 291 (660)
T PRK01747 256 NRDAAIIGGGIAGAALALALARRG-WQVTLYEADEAP 291 (660)
T ss_pred CCCEEEECCHHHHHHHHHHHHHCC-CEEEEEECCCCC
T ss_conf 871899893899999999999789-968999479875
No 225
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.04 E-value=0.017 Score=35.95 Aligned_cols=98 Identities=10% Similarity=0.179 Sum_probs=68.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHH--HHHHHHHHHCCC
Q ss_conf 779997788789999999997799818999449899999997789842279881787438973168--775555441122
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHT--LLQNADIVLFAT 82 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~--~l~~adiIiiav 82 (329)
..|-|+|-|..|..++..|..+| .++.+.+.|++.++...+.+... |+.|..=+ +..+ -+++|.++++++
T Consensus 401 ~~VII~G~GR~Gq~var~L~~~g-i~~vviD~d~~~V~~~r~~G~~v-~yGDat~~------~vL~~AGi~~A~~vViai 472 (602)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK-MRITVLERDISAVNLMRKYGYKV-YYGDATQL------ELLRAAGAEKAEAIVITC 472 (602)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHCCCEE-EEECCCCH------HHHHHCCCCCCCEEEEEE
T ss_conf 99899788756899999999789-99899978679999999789908-97589999------999867904058899982
Q ss_pred CHH-HHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 177-76665555332035685055237520
Q gi|254781039|r 83 SSK-GYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 83 ps~-~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
+-. ....+.+.++.+ .|+.+|+-=++--
T Consensus 473 ~d~~~~~~iv~~~r~~-~P~l~I~aRar~~ 501 (602)
T PRK03659 473 NEPEDTMKLVELCQQH-FPHLHILARARGR 501 (602)
T ss_pred CCHHHHHHHHHHHHHH-CCCCEEEEEECCH
T ss_conf 9899999999999987-8699699986978
No 226
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.02 E-value=0.015 Score=36.28 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=51.6
Q ss_pred CEEEEECCCHHHHH-HHHHHHHC----CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHH
Q ss_conf 77999778878999-99999977----998189994498999999977898422798817874389731-6877555544
Q gi|254781039|r 5 STIFVIGAGAFGTA-LSSVIASR----GLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIV 78 (329)
Q Consensus 5 ~kI~ViGaGa~GtA-lA~~La~~----g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiI 78 (329)
.||+|||||+-=|. +...+.+. ...++.|++.|++..+.+..--. ++......+-.+.+|+| .+++++||+|
T Consensus 1 mKI~iIGaGS~~t~~lv~~l~~~~~~l~~~ei~L~DId~erL~~~~~~a~--~~~~~~~~~~~v~~ttd~~eAl~gADfV 78 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK--RYVEEVGADIKFEKTMDLEDAIIDADFV 78 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCHHHCCCCEEEEECCCHHHHHHHHHHHH--HHHHHHCCCEEEEEECCHHHHHCCCCEE
T ss_conf 97999898368789999999838433788989998899999999999999--9999619983899978999985689999
Q ss_pred HCCCCHHHHHHHH
Q ss_conf 1122177766655
Q gi|254781039|r 79 LFATSSKGYGEAL 91 (329)
Q Consensus 79 iiavps~~~~~~l 91 (329)
|..+-..+++...
T Consensus 79 i~~irvGg~~~r~ 91 (425)
T cd05197 79 INQFRVGGLTYRE 91 (425)
T ss_pred EEEEEECCHHHHH
T ss_conf 9988756705789
No 227
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.98 E-value=0.03 Score=34.33 Aligned_cols=42 Identities=17% Similarity=0.406 Sum_probs=18.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC
Q ss_conf 9997788789999999997799818999449899999997789
Q gi|254781039|r 7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRI 49 (329)
Q Consensus 7 I~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~ 49 (329)
+.|+|-|..|..++..|.++| .++...+.|++.++..++.+.
T Consensus 420 vii~G~Gr~G~~va~~L~~~~-~~~vvid~d~~~v~~~~~~g~ 461 (558)
T PRK10669 420 ALLVGYGRVGSLLGEKLLASG-IPLVVIETSRTRVDELRERGI 461 (558)
T ss_pred EEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHCCC
T ss_conf 899898866999999999879-988999898999999996899
No 228
>PRK06101 short chain dehydrogenase; Provisional
Probab=95.96 E-value=0.029 Score=34.44 Aligned_cols=46 Identities=28% Similarity=0.479 Sum_probs=39.3
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC
Q ss_conf 877999778-87899999999977998189994498999999977898
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRIN 50 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n 50 (329)
|++|.|-|+ +-.|.++|..|++.| .+|.+++|+++..+++.+...+
T Consensus 1 MktvlITGassGIG~a~A~~la~~G-~~Vi~~~R~~~~l~~~~~~~~~ 47 (241)
T PRK06101 1 MTSVLITGATSGIGKQLALDYAKAG-WKVIACGRNEAVLDELHDQSSN 47 (241)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCC
T ss_conf 9989992240499999999999879-9899998999999999973288
No 229
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.91 E-value=0.017 Score=35.88 Aligned_cols=110 Identities=16% Similarity=0.248 Sum_probs=64.5
Q ss_pred EEEEE-CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 79997-78878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 6 TIFVI-GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 6 kI~Vi-GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
+..|| |.|.||..++..|..+| ++|.+ .++|++|+|||-
T Consensus 2 ~~~iig~~gr~g~~~~~~~~~~g-~~v~i---------------------------------------~k~D~ifiaVPI 41 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNG-LGVYI---------------------------------------KKADHAFLSVPI 41 (197)
T ss_pred CEEEECCCCCHHHHHHHHHCCCC-CEEEE---------------------------------------CCCCEEEEEEEH
T ss_conf 16996378716689999970378-47897---------------------------------------278889998245
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC-CCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCC-CHHHHH
Q ss_conf 7766655553320356850552375200025854-31012332100121001288817899876532124677-317899
Q gi|254781039|r 85 KGYGEALNFYSNWLKESAEIIICSKGFEYNSGML-LSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSS-KNIDIS 162 (329)
Q Consensus 85 ~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~-~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~-~d~~~~ 162 (329)
..+.++++. .+..++-++ +-+. ++++-.++..-+|. -||.-......+ +.+.+.. .+.+..
T Consensus 42 ~~~~~iI~~------~~~tiiDv~------SVK~p~k~~~~~IIs~HPM---FGPdS~~~~~~~--~vi~v~d~~~~~~~ 104 (197)
T PRK06444 42 DAALNYIES------YDNNFVEIS------SVKWPFKKYSGKIVSIHPL---FGPMSYNDGVHR--TVIFINDISRDNYL 104 (197)
T ss_pred HHHHHHHHH------CCCEEEEEE------ECCCHHHHHCCCEEEECCC---CCCCCCCCCCCC--EEEEEECCCCHHHH
T ss_conf 888999984------797389988------6331177707987987998---798853124787--69997258877799
Q ss_pred HHHHHHHCCC
Q ss_conf 9999753411
Q gi|254781039|r 163 RRLSKILTTD 172 (329)
Q Consensus 163 ~~i~~~~~~~ 172 (329)
..+.++|++-
T Consensus 105 ~~~k~lF~g~ 114 (197)
T PRK06444 105 NEINEMFRGY 114 (197)
T ss_pred HHHHHHHCCC
T ss_conf 9999982898
No 230
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=95.90 E-value=0.013 Score=36.69 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=52.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH-----------------H-----HHHHHHHCCCCCCCCCCCCCC-
Q ss_conf 87799977887899999999977998189994498-----------------9-----999999778984227988178-
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE-----------------I-----LMQQLEDTRINAKALPGIKLS- 60 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~-----------------~-----~~~~i~~~~~n~~~lp~i~l~- 60 (329)
=+||+|||+|-=|.|=|..|.+.| |.|++|-|+. . .++.|..++. .+-+++.+=
T Consensus 151 GkkVAVVGSGPAGLAaA~qLnrAG-H~VTVfER~DR~GGLL~YGIPnmKLdK~e~v~RRi~~l~aEG~--~FvtnteiGd 227 (517)
T TIGR01317 151 GKKVAVVGSGPAGLAAADQLNRAG-HTVTVFEREDRVGGLLRYGIPNMKLDKEEIVDRRIDLLEAEGV--DFVTNTEIGD 227 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCCCCC
T ss_conf 866899756757999999985358-8389974367888630248887433738899999999874784--2017830046
Q ss_pred --CCEEEEE----C--HH-HHHHHHHHHCCCCHH
Q ss_conf --7438973----1--68-775555441122177
Q gi|254781039|r 61 --PLLNFSS----D--HT-LLQNADIVLFATSSK 85 (329)
Q Consensus 61 --~~i~~t~----~--~~-~l~~adiIiiavps~ 85 (329)
+|-++++ + .+ ..++.|-||+|+=|+
T Consensus 228 Wdenskitnlsk~di~~~~L~~~fDAVVLa~Ga~ 261 (517)
T TIGR01317 228 WDENSKITNLSKKDISADELKEDFDAVVLATGAT 261 (517)
T ss_pred CCCCCCEECCCCCCCCHHHHHHHCCEEEEECCCC
T ss_conf 5344420002234268799871469389833788
No 231
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.88 E-value=0.018 Score=35.82 Aligned_cols=98 Identities=12% Similarity=0.167 Sum_probs=68.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHH--HHHHHHHHHCCC
Q ss_conf 779997788789999999997799818999449899999997789842279881787438973168--775555441122
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHT--LLQNADIVLFAT 82 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~--~l~~adiIiiav 82 (329)
.+|.|+|-|..|..++..|..+| -++...+.|++.++...+.+...- +.|..=+ +..+ -+++|.++++++
T Consensus 400 ~~VII~G~GRvGq~var~L~~~g-i~~vviD~d~~~V~~~r~~G~~v~-yGDat~~------~vL~~AGi~~Ar~vViai 471 (615)
T PRK03562 400 PRVIIAGFGRFGQIVGRLLLSSG-VKMVVLDHDPDHIETLRKFGMKVF-YGDATRM------DLLESAGAAKAEVLINAI 471 (615)
T ss_pred CCEEEEECCCCHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHCCCEEE-EECCCCH------HHHHHCCCCCCCEEEEEE
T ss_conf 99899902804699999999789-987999799999999996799089-7689999------999867914068899994
Q ss_pred CHHH-HHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 1777-6665555332035685055237520
Q gi|254781039|r 83 SSKG-YGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 83 ps~~-~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
+-.. ...+++.++.+ .|+.+|+-=++..
T Consensus 472 dd~~~~~~iv~~~r~~-~P~l~IiaRard~ 500 (615)
T PRK03562 472 DDPQTNLQLTELVKEH-FPHLQIIARARDV 500 (615)
T ss_pred CCHHHHHHHHHHHHHH-CCCCEEEEEECCH
T ss_conf 9899999999999975-8998699983977
No 232
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.87 E-value=0.03 Score=34.36 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=35.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHCCCC
Q ss_conf 887799977887899999999977998189994498--999999977898
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE--ILMQQLEDTRIN 50 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~--~~~~~i~~~~~n 50 (329)
+.++|.|+|.|-=|.|+|..|.+.| .+|.+|+.++ +..+.++.....
T Consensus 6 ~~k~vlV~GlG~sG~a~a~~L~~~G-~~V~~~D~~~~~~~~~~l~~~~~~ 54 (501)
T PRK02006 6 QRPMVLVLGLGESGLAMARWCARHG-CRLRVADTREAPPNLAALQAEGID 54 (501)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHCCCC
T ss_conf 8983999833688999999999789-849999899998619999860898
No 233
>PRK07102 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.033 Score=34.10 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=36.4
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 877999778-87899999999977998189994498999999977
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|++|.|.|+ +-.|.++|..|+++| ++|.+++|+++..+.+.++
T Consensus 1 MK~vlITGassGIG~a~A~~la~~G-~~v~l~~R~~~~l~~~~~~ 44 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG-ARLYLAARDTERLERIAAD 44 (243)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 9979991574599999999999879-9899998988999999999
No 234
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.77 E-value=0.022 Score=35.15 Aligned_cols=140 Identities=23% Similarity=0.337 Sum_probs=79.4
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHH
Q ss_conf 8877999778-8789999999997799818999---4498999999977898422798817874389731-687755554
Q gi|254781039|r 3 NYSTIFVIGA-GAFGTALSSVIASRGLANVTLL---GRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADI 77 (329)
Q Consensus 3 ~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~---~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adi 77 (329)
+|.||+|.|+ |.||..+...+.... ++.|. .|.+... ..+. ...+-++. +-.+.++++ .....++|+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~--~~~L~aa~~~~~~~~--~g~d---~ge~~g~~-~~gv~v~~~~~~~~~~~DV 72 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAP--DLELVAAFDRPGSLS--LGSD---AGELAGLG-LLGVPVTDDLLLVKADADV 72 (266)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC--CCEEEEEEECCCCCC--CCCC---HHHHCCCC-CCCCEEECCHHHCCCCCCE
T ss_conf 97369997578727899999985289--946999981378422--3431---12321446-5573320634330468988
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 41122177766655553320356850552375200025854310123321001210012888178998765321246773
Q gi|254781039|r 78 VLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSK 157 (329)
Q Consensus 78 Iiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~ 157 (329)
+|=-+-+....+.++.. ++.+..+|..|-||.......+.+..++ +.++--|||+--+.--
T Consensus 73 ~IDFT~P~~~~~~l~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~------v~vv~a~NfSiGvnll---------- 133 (266)
T COG0289 73 LIDFTTPEATLENLEFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK------VPVVIAPNFSLGVNLL---------- 133 (266)
T ss_pred EEECCCCHHHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHHHHH------CCEEEECCCHHHHHHH----------
T ss_conf 99899825469999999---9769986997999998999999999853------8989965640799999----------
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 1789999997534
Q gi|254781039|r 158 NIDISRRLSKILT 170 (329)
Q Consensus 158 d~~~~~~i~~~~~ 170 (329)
.++++..++.|.
T Consensus 134 -~~l~~~aak~l~ 145 (266)
T COG0289 134 -FKLAEQAAKVLD 145 (266)
T ss_pred -HHHHHHHHHHCC
T ss_conf -999999998667
No 235
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.75 E-value=0.014 Score=36.41 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=80.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHH--HHHC---CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHH
Q ss_conf 9888779997788789999999--9977---998189994498999999977898422798817874389731-687755
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSV--IASR---GLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQN 74 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~--La~~---g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~ 74 (329)
|+. .||+|||+|+-+++.-.. |... ...++.|++.+++..+.+..- ..++....-.+-.+..++| .+++++
T Consensus 1 m~~-~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~ei~L~Did~~r~~~i~~~--~~~~v~~~g~~~kv~~ttd~~eAl~g 77 (442)
T COG1486 1 MKK-FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAIL--AKKLVEEAGAPVKVEATTDRREALEG 77 (442)
T ss_pred CCC-CEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHH--HHHHHHHHCCCEEEEEECCHHHHHCC
T ss_conf 997-369998997531479999898417557766699983877889999999--99999963998589994589998447
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCEE----ECCCCCCCCCCCCCC---H---HHHHHHHHCCCEECCCCCHHH-H
Q ss_conf 5544112217776665555332035685055----237520002585431---0---123321001210012888178-9
Q gi|254781039|r 75 ADIVLFATSSKGYGEALNFYSNWLKESAEII----ICSKGFEYNSGMLLS---S---YSEKVLPSHSISVLSGPGFAR-D 143 (329)
Q Consensus 75 adiIiiavps~~~~~~l~~i~~~l~~~~~ii----~~sKGi~~~t~~~~s---e---~i~~~~~~~~~~vlsGPs~A~-E 143 (329)
||+|+.++-..+++ +...-..+..+.-++ ...-|| -...+.++ | .+++.-|+--+-=.+.|.+-. |
T Consensus 78 AdfVi~~~rvG~l~--~r~~De~IplkyG~~gqET~G~GGi-~~glRtIpvildi~~~m~~~~P~Aw~lNytNPa~~vTe 154 (442)
T COG1486 78 ADFVITQIRVGGLE--AREKDERIPLKHGLYGQETNGPGGI-FYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTE 154 (442)
T ss_pred CCEEEEEEEECCCC--CCHHHHCCCHHHCCCCCCCCCCCHH-HHHCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH
T ss_conf 98899987506843--0022311326417045446472078-76302441999999999986977478743686999999
Q ss_pred HHHH-HHH-HCCCCCCH-HHHHHHHHHHHCCC
Q ss_conf 9876-532-12467731-78999999753411
Q gi|254781039|r 144 IAQG-LPV-GVILSSKN-IDISRRLSKILTTD 172 (329)
Q Consensus 144 ia~~-~pt-~~~ia~~d-~~~~~~i~~~~~~~ 172 (329)
...+ -|. -++=-|.. ......+++.|.-+
T Consensus 155 Av~r~~~~~K~VGlCh~~~g~~~~lAe~L~~~ 186 (442)
T COG1486 155 AVRRLYPKIKIVGLCHGPIGIAMELAEVLGLE 186 (442)
T ss_pred HHHHHCCCCCEEEECCCHHHHHHHHHHHHCCC
T ss_conf 99985787878975884578999999995899
No 236
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=95.68 E-value=0.011 Score=37.27 Aligned_cols=71 Identities=25% Similarity=0.243 Sum_probs=47.8
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHH--HHHHHHCCCCCCCCCCCCC-CCCE-EEEECHHHHHHHHHHHCC
Q ss_conf 999778-8789999999997799818999449899--9999977898422798817-8743-897316877555544112
Q gi|254781039|r 7 IFVIGA-GAFGTALSSVIASRGLANVTLLGRKEIL--MQQLEDTRINAKALPGIKL-SPLL-NFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 7 I~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~--~~~i~~~~~n~~~lp~i~l-~~~i-~~t~~~~~l~~adiIiia 81 (329)
|.|.|+ |..|++++..|.+.| |+|+...|+++. .+.+...+ +++ .-++ ...+..++++++|.+|.+
T Consensus 1 IlV~GatG~iG~~vv~~L~~~g-~~Vr~l~R~~~~~~~~~l~~~g--------ve~v~gD~~d~~sl~~al~gvd~v~~~ 71 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKAG-HPVRALVRDPKSELAKSLKAAG--------VELVEGDLDDHESLVEALKGVDVVFSV 71 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHCC--------CEEEEECCCCHHHHHHHHCCCCEEEEE
T ss_conf 0998968289999999998589-9389997187366566664179--------889990688878999996799889991
Q ss_pred CCHHH
Q ss_conf 21777
Q gi|254781039|r 82 TSSKG 86 (329)
Q Consensus 82 vps~~ 86 (329)
+|...
T Consensus 72 ~~~~~ 76 (232)
T pfam05368 72 TGFWL 76 (232)
T ss_pred CCCCC
T ss_conf 58874
No 237
>PRK07208 hypothetical protein; Provisional
Probab=95.67 E-value=0.024 Score=34.96 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=30.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 877999778878999999999779981899944989
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
.+||.|||||-=|.+.|..|++.| ++|+++.+++.
T Consensus 3 ~kkv~IiGAG~~GL~aA~~L~~~g-~~v~vlEk~~~ 37 (474)
T PRK07208 3 KKSVVIIGAGPAGLTAAYELVKRG-YPVTILEADPE 37 (474)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 875999897689999999998689-97599978998
No 238
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.013 Score=36.77 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=33.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 8877999778878999999999779981899944989999
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQ 42 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~ 42 (329)
-|+||.|+|.|.=|.+.|..|.++| ..|.+|+.+.+..+
T Consensus 2 ~~KkvlV~GlG~SG~s~a~~L~~~g-~~v~~~D~~~~~~~ 40 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSVARFLAQKG-VYVIGVDNSLEALQ 40 (418)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCC-CEEEEECCCHHHHH
T ss_conf 9866999808887999999999782-98999829814545
No 239
>PRK05868 hypothetical protein; Validated
Probab=95.63 E-value=0.02 Score=35.53 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=31.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 877999778878999999999779981899944989
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
|+||.|+|+|-=|.++|..|.+.| ++|+++.|.++
T Consensus 1 ~~kVlIvGaGiAGlalA~~L~r~G-~~VtV~Er~p~ 35 (372)
T PRK05868 1 MKTVLVSGASVAGTAAAYWLGRHG-YSVTMVERHPG 35 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 999999898889999999998589-98899957999
No 240
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.62 E-value=0.026 Score=34.77 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=30.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 779997788789999999997799818999449899
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL 40 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~ 40 (329)
.||.|+|.|.=|-+.|..|.+.| .+|.+|+.++..
T Consensus 18 ~kvlV~GlG~SG~s~a~~L~~~G-~~v~~~D~~~~~ 52 (476)
T PRK00141 18 GRVLVAGAGVSGLGIAKMLSELG-CDVVVADDNETQ 52 (476)
T ss_pred CCEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCH
T ss_conf 98899922788999999999789-979999899870
No 241
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.57 E-value=0.056 Score=32.55 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=36.2
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 988877999778-87899999999977998189994498999999977
Q gi|254781039|r 1 MKNYSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 1 M~~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|++|+.+.|-|+ +-.|.|+|..|+++| .+|.+++|+++..+.+.++
T Consensus 3 ~~~mKvalITGas~GIG~a~A~~la~~G-~~V~l~~R~~~~l~~~~~e 49 (241)
T PRK07454 3 LNSMPTALITGASRGIGKATALAFAKAG-WDLALVARSQDALEALAEE 49 (241)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 8999889991758789999999999879-9899998999999999999
No 242
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.56 E-value=0.014 Score=36.53 Aligned_cols=97 Identities=20% Similarity=0.273 Sum_probs=60.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-------CE---EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECH-
Q ss_conf 9888779997788789999999997799-------81---899944989999999778984227988178743897316-
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGL-------AN---VTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDH- 69 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~-------~~---V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~- 69 (329)
|+++ ||+++|.|..|+.++..|.++.. .+ +.+.+||.+. .+ ++.++ ....++|.
T Consensus 1 M~~i-kIgl~G~GtVG~gv~~il~~~~~~i~~~~g~~~~i~~i~~r~~~k------~r-------~~~~~-~~~~t~d~~ 65 (432)
T PRK06349 1 MKPL-KVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK------DR-------GVDLS-GYLLTTDPE 65 (432)
T ss_pred CCEE-EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC------CC-------CCCCC-CCEEECCHH
T ss_conf 9553-899998780699999999980999999869976999999689753------55-------89998-555547999
Q ss_pred HHHHHH--HHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 877555--544112217776665555332035685055237520002
Q gi|254781039|r 70 TLLQNA--DIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYN 114 (329)
Q Consensus 70 ~~l~~a--diIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~ 114 (329)
+.+.+. |+|+-.+- +.+...+-+..-++.++.+|++-|++...
T Consensus 66 ~i~~d~~idivVEliG--G~~~A~~~i~~AL~~GkhVVTANKallA~ 110 (432)
T PRK06349 66 ELVNDPDIDIVVELMG--GIEPARELILAALEAGKHVVTANKALLAV 110 (432)
T ss_pred HHHCCCCCCEEEEECC--CCHHHHHHHHHHHHCCCCEEECCHHHHHH
T ss_conf 9943899989999669--95079999999998599689258799986
No 243
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.55 E-value=0.025 Score=34.88 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=31.7
Q ss_pred CCCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 988877--9997788789999999997799818999449
Q gi|254781039|r 1 MKNYST--IFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 1 M~~~~k--I~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
|+++++ |+|+|+|--|.++|..|++.| .+|.++.++
T Consensus 1 m~~~~~~DV~IvGaGp~Gl~lA~~L~~~G-~~v~liE~~ 38 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAG-LSVALVEGR 38 (392)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 99999998899990699999999998669-978999178
No 244
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.55 E-value=0.067 Score=32.08 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=39.7
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 988877999778-87899999999977998189994498999999977
Q gi|254781039|r 1 MKNYSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 1 M~~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|++|+.+.|=|+ .-+|.++|..|++.| ++|.+.+|+++..+.+.+.
T Consensus 1 M~~~KvvlITGassGIG~aiA~~l~~~G-~~Vi~~~R~~~~l~~l~~~ 47 (277)
T PRK06180 1 MASMKTWLITGVSSGFGRALAQAALAAG-HRVVGTVRSAAARRDFEAL 47 (277)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 9999889991787399999999999879-9999998999999999986
No 245
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=95.54 E-value=0.023 Score=35.07 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=83.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEE------------C-----CHHHHH-HHHHCCCCCCCCCCCCCCCCEE
Q ss_conf 887799977887899999999977998189994------------4-----989999-9997789842279881787438
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLG------------R-----KEILMQ-QLEDTRINAKALPGIKLSPLLN 64 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~------------r-----~~~~~~-~i~~~~~n~~~lp~i~l~~~i~ 64 (329)
+..||+|||||-=|.+.|.-||+.| |+|++|- . ++++++ .+++-. .| |+++..+-.
T Consensus 141 t~~kVAViGaGPAGL~cA~elAk~G-h~VtvfEALhKPGGV~~YGIPefRLpKei~~~E~k~Lk----kl-Gv~fr~~~l 214 (462)
T TIGR01316 141 TKKKVAVIGAGPAGLACASELAKKG-HEVTVFEALHKPGGVLAYGIPEFRLPKEIVETEVKKLK----KL-GVKFRTDYL 214 (462)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHH----HC-CEEEEECCE
T ss_conf 8877999846821468899997479-86999971489985675368885487578898888763----26-637994437
Q ss_pred E---EECHHHHHHH--HHHHCCCCHHHHHHHHH----HHHHHCCCCCC--EEECCCCCCCCCCCCCCHHHHHHHHHCCCE
Q ss_conf 9---7316877555--54411221777666555----53320356850--552375200025854310123321001210
Q gi|254781039|r 65 F---SSDHTLLQNA--DIVLFATSSKGYGEALN----FYSNWLKESAE--IIICSKGFEYNSGMLLSSYSEKVLPSHSIS 133 (329)
Q Consensus 65 ~---t~~~~~l~~a--diIiiavps~~~~~~l~----~i~~~l~~~~~--ii~~sKGi~~~t~~~~se~i~~~~~~~~~~ 133 (329)
+ .++.+.++.. |-|||++=.- ...+++ .|......+-. =+++-|--|...-.+|-++ ..++.
T Consensus 215 vGkt~TL~eL~~~YGfDAVFIgtGAG-~pkl~NipG~~L~gvysA~dfLtR~nLmKAyefp~~dtPv~~------gK~vv 287 (462)
T TIGR01316 215 VGKTVTLEELLEKYGFDAVFIGTGAG-LPKLLNIPGEELKGVYSANDFLTRVNLMKAYEFPKKDTPVEV------GKKVV 287 (462)
T ss_pred ECCCHHHHHHHHHCCCCEEEEEECCC-CCEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE------CCEEE
T ss_conf 50511288888751970799950689-870016784343400223468877777654236678875654------47689
Q ss_pred ECCCCCHHHHHHHH---HHHH-CCCC---CCHH--HHHHHHHHHHCC-CCE-EEEECCCCCEEEEE
Q ss_conf 01288817899876---5321-2467---7317--899999975341-113-89973886144440
Q gi|254781039|r 134 VLSGPGFARDIAQG---LPVG-VILS---SKNI--DISRRLSKILTT-DSF-RVYCSDDRIGVQIG 188 (329)
Q Consensus 134 vlsGPs~A~Eia~~---~pt~-~~ia---~~d~--~~~~~i~~~~~~-~~~-~~~~s~D~~GvE~~ 188 (329)
++.|-+.|-|-++- +=.. +.++ ++.+ .-.++|..+..- =.| -+.....++|=|=+
T Consensus 288 viGgGntAvD~artAlRLGaEqvh~~YRrtRedmtAr~EEi~ha~eEGVkfhfl~Qpve~iGdE~G 353 (462)
T TIGR01316 288 VIGGGNTAVDAARTALRLGAEQVHVVYRRTREDMTAREEEIKHAEEEGVKFHFLLQPVEVIGDEEG 353 (462)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCEEEEECCCC
T ss_conf 987853678777666452842369988547775136699999885389289987421689865765
No 246
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.49 E-value=0.022 Score=35.20 Aligned_cols=14 Identities=0% Similarity=-0.111 Sum_probs=5.3
Q ss_pred HHHCCCCHHHHHHH
Q ss_conf 98078998999999
Q gi|254781039|r 307 VMMNHISVDEALSI 320 (329)
Q Consensus 307 il~~~~~~~~~i~~ 320 (329)
+-.+..-|.+.++.
T Consensus 272 lwtG~~~p~~~mr~ 285 (289)
T PRK12548 272 LFTGKDMPVSEVKA 285 (289)
T ss_pred HHHCCCCCHHHHHH
T ss_conf 98399999999999
No 247
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.48 E-value=0.081 Score=31.52 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=73.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 88779997788789999999997799818999449-89999999778984227988178743897316877555544112
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK-EILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~-~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiia 81 (329)
+.-|+.|+|+|.-+.-=+..|.+.| ..|+++..+ .+....+.+.+. +++ +.-.-..+.+.++.+||.|
T Consensus 23 ~klkvLVVGGG~VA~RKi~~Ll~ag-A~VtVVSP~~~~el~~L~~~~~-------I~~---i~r~y~~~dL~~~~LVIaA 91 (222)
T PRK05562 23 NKIKVLVIGGGKAAFIKGKTFLKKG-CYVEILSKEFSKEFLDLKKYGN-------LKL---IKGNYDKEFIKDKHLIIIA 91 (222)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHCCC-------EEE---EECCCCHHHCCCCCEEEEE
T ss_conf 6766999998799999999998789-9899987866889999997598-------699---9686797780887399994
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECC---CCCHHHHHHHHHHH
Q ss_conf 2177766655553320356850552375200025854310123321001210012---88817899876532
Q gi|254781039|r 82 TSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLS---GPGFARDIAQGLPV 150 (329)
Q Consensus 82 vps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vls---GPs~A~Eia~~~pt 150 (329)
+.-..+.+.+.+.... .+. +++.+--.+..+..+|+.+-+. ...+++=| -|-+|..+.+..-+
T Consensus 92 Tdd~~lN~~I~~~a~~--~~i-lvNvvddp~~~~fi~Paiv~Rg---~L~IAIST~G~SP~lAr~iR~klE~ 157 (222)
T PRK05562 92 TDDEELNNKIRKHCDR--LYK-LYIDCSDFKKGLCVIPYQRSSK---NMVFALNTKGGSPKTSVFIGEKVKN 157 (222)
T ss_pred CCCHHHHHHHHHHHHH--HCC-EEEECCCCCCCCEEECEEEEEC---CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 7988999999999998--099-8898578876817977099728---9799998999897999999999999
No 248
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=95.45 E-value=0.024 Score=34.93 Aligned_cols=31 Identities=42% Similarity=0.632 Sum_probs=28.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 79997788789999999997799818999449
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
.|.|||+|-.|.+.|..|++.| .+|.++.++
T Consensus 1 dv~IIGaGi~Gls~A~~La~~G-~~V~vie~~ 31 (309)
T pfam01266 1 DVVVIGGGIVGLSTAYELARRG-LSVTLLERG 31 (309)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEECCC
T ss_conf 9999992799999999999789-959999499
No 249
>PRK11579 putative oxidoreductase; Provisional
Probab=95.44 E-value=0.045 Score=33.19 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=54.7
Q ss_pred CCCCCEEEEECCCHHHHH-HHHHHHHCCCCE-EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHH--HH
Q ss_conf 988877999778878999-999999779981-89994498999999977898422798817874389731687755--55
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTA-LSSVIASRGLAN-VTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQN--AD 76 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtA-lA~~La~~g~~~-V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~--ad 76 (329)
|++.-|++|||+|.||.. .+..++.....+ |-++++|++.+. .. .++++ .+++..+.+.+ .|
T Consensus 1 M~~~irvgiiG~G~~~~~~h~~~~~~~~~~~l~av~d~~~~~~~---a~------~~~~~-----~~~~~~~ll~~~~id 66 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDETKVK---AD------WPTVT-----VVSEPKHLFNDPNID 66 (346)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHH---CC------CCCCC-----EECCHHHHHCCCCCC
T ss_conf 99887599993629999999999962999199999798999995---02------58995-----389999994599999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 44112217776665555332035685055237520
Q gi|254781039|r 77 IVLFATSSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 77 iIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
.|++|+|+....+........ ++. |.|-|-+
T Consensus 67 ~V~i~tp~~~H~~~~~~al~a---Gkh-v~~EKP~ 97 (346)
T PRK11579 67 LIVIPTPNDTHFPLAKAALEA---GKH-VVVDKPF 97 (346)
T ss_pred EEEECCCCHHHHHHHHHHHHC---CCC-EEECCCC
T ss_conf 999979967899999999987---994-8953876
No 250
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.43 E-value=0.06 Score=32.38 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=32.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHHC
Q ss_conf 779997788789999999997799818999449-----8999999977
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRK-----EILMQQLEDT 47 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~-----~~~~~~i~~~ 47 (329)
+||.|+|.|.=|.+.|..|.+.| .+|.+|+.. .+..+.++..
T Consensus 15 k~v~V~GlG~sG~s~a~~L~~~G-~~v~~~D~~~~~~~~~~~~~l~~~ 61 (481)
T PRK01438 15 LRVVVAGLGVSGFPAADALHELG-ASVTVVADGDDDRSRERAALLEVL 61 (481)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHHHC
T ss_conf 98999957588999999999679-989999799874486899988854
No 251
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=95.41 E-value=0.02 Score=35.49 Aligned_cols=31 Identities=42% Similarity=0.744 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 99977887899999999977998189994498
Q gi|254781039|r 7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 7 I~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|.|||+|-.|.++|..|++.| |+|+|..+++
T Consensus 1 ~~ViGGGvIGL~~A~~L~~~G-~~V~l~~~~~ 31 (357)
T TIGR02352 1 VLVIGGGVIGLSVAVELAERG-HSVTLLDRDP 31 (357)
T ss_pred CEEECCHHHHHHHHHHHHHCC-CCEEEEECCC
T ss_conf 978453187899999999749-9389996586
No 252
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.41 E-value=0.023 Score=35.14 Aligned_cols=104 Identities=18% Similarity=0.329 Sum_probs=67.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH--------------H-----------HHHHHHCCCCCC--------
Q ss_conf 7999778878999999999779981899944989--------------9-----------999997789842--------
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI--------------L-----------MQQLEDTRINAK-------- 52 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~--------------~-----------~~~i~~~~~n~~-------- 52 (329)
|+.++|+|..|+..|..|..-|..++++.+++.- . .+.++ ++||.
T Consensus 1 kvLllGaGtLGc~var~L~~~GV~~it~VD~~~Vs~SN~~RQ~Lf~~~D~~~g~~Ka~aAa~~Lk--~I~P~v~a~G~~l 78 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLK--EIFPSIDATGIVL 78 (307)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCEEEEEECCEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHH--HHCCCCCEEEEEE
T ss_conf 97998577520699999998369858998499885566223567636665189807999999999--8699983057997
Q ss_pred --CCCCCCCCCCE--EEEE----CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf --27988178743--8973----1687755554411221777666555533203568505523752000
Q gi|254781039|r 53 --ALPGIKLSPLL--NFSS----DHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEY 113 (329)
Q Consensus 53 --~lp~i~l~~~i--~~t~----~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~ 113 (329)
-.||+++.+.- .+.. ..+.+++.|+||+.+-|..-||.=.-+... .++++|+++=||+.
T Consensus 79 ~IPMpGH~v~~~~~~~~~~d~~~L~~LI~~HDvvFLLtDSRESRWLPTll~a~--~~Ki~InaALGFDS 145 (307)
T cd01486 79 SIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAA--KNKLVINAALGFDS 145 (307)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHC--CCCEEEEEEECCCE
T ss_conf 25789794776678999999999999998678999932660430567898733--68658996405652
No 253
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.40 E-value=0.069 Score=31.96 Aligned_cols=46 Identities=28% Similarity=0.438 Sum_probs=38.2
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 988877999778-87899999999977998189994498999999977
Q gi|254781039|r 1 MKNYSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 1 M~~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|.+++++.|-|| +-.|-++|..|+++| ++|.|.+|+++..+.+.++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRG-YNLILVARREDKLEALAKE 49 (265)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 7778679997788648999999999779-9799996769999999999
No 254
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.35 E-value=0.042 Score=33.39 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=69.5
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHH
Q ss_conf 988877999778-878999999999779--98189994498999999977898422798817874389731-68775555
Q gi|254781039|r 1 MKNYSTIFVIGA-GAFGTALSSVIASRG--LANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNAD 76 (329)
Q Consensus 1 M~~~~kI~ViGa-Ga~GtAlA~~La~~g--~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~ad 76 (329)
|++.-||+|+|| |.-|..+-..|.+.. ..++++++..... +...++ .+ +.+...+. .....+.|
T Consensus 1 M~~~~~VaivGATG~VGq~~l~lL~e~~fp~~~l~~laS~~Sa-------Gk~i~~-~~----~~~~v~~~~~~~~~~~d 68 (337)
T PRK08040 1 MSEGWNIALLGATGAVGEALLETLAERQFPVGEIYALAREESA-------GETLRF-GG----KSITVQDAAEFDWTQAQ 68 (337)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC-------CCEEEE-CC----CEEEEEECCCCCCCCCC
T ss_conf 9999879998885088999999997179981359999888889-------977778-99----18899977703324698
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC--CCCCCCCCCHHHHH
Q ss_conf 44112217776665555332035685055237520--00258543101233
Q gi|254781039|r 77 IVLFATSSKGYGEALNFYSNWLKESAEIIICSKGF--EYNSGMLLSSYSEK 125 (329)
Q Consensus 77 iIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi--~~~t~~~~se~i~~ 125 (329)
++|++.++..-+.+..+. .+.+..+|+.+.-+ +++-=+.++|+=.+
T Consensus 69 i~ff~a~~~~s~~~~~~a---~~aG~~VIDnss~~Rm~~dVPLvvPeVN~~ 116 (337)
T PRK08040 69 LAFFVAGKEASAAYAEEA---TNAGCLVIDSSGLFALEPDVPLVVPEVNPF 116 (337)
T ss_pred EEEECCCCHHHHHHHHHH---HHCCCEEEECCHHHCCCCCCCCCCCCCCHH
T ss_conf 899917717888889999---848959997961310588874216740878
No 255
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.32 E-value=0.071 Score=31.88 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=34.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH----HHHHHHHHCC
Q ss_conf 7799977887899999999977998189994498----9999999778
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE----ILMQQLEDTR 48 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~----~~~~~i~~~~ 48 (329)
+||.|+|.|.=|-+.|..|.+.| ++|.+|+.++ ...+.+.+.+
T Consensus 10 k~i~viGlG~sG~s~a~~L~~~G-~~V~~~D~~~~~~~~~~~~l~~~g 56 (450)
T PRK02472 10 KKVLVLGLAKSGYAAAKLLHKLG-ANVTVNDGKPFSENPAAQELLEEG 56 (450)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHHCC
T ss_conf 98999977899999999999886-989998488665798999999679
No 256
>PRK06753 hypothetical protein; Provisional
Probab=95.32 E-value=0.025 Score=34.88 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=30.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 77999778878999999999779981899944989
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
.||.|+|+|--|.++|..|++.| ++|.++.|+++
T Consensus 1 mkV~IVGaGiaGL~~A~~L~~~G-~~v~V~Er~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG-HTVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEECCCCC
T ss_conf 98999994589999999999779-99999888999
No 257
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.30 E-value=0.07 Score=31.94 Aligned_cols=104 Identities=17% Similarity=0.304 Sum_probs=65.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCC---CCCC--------CCCCCCEEEE-------E
Q ss_conf 79997788789999999997799818999449899999997789842---2798--------8178743897-------3
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAK---ALPG--------IKLSPLLNFS-------S 67 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~---~lp~--------i~l~~~i~~t-------~ 67 (329)
||.|+|+|..|+-+++.|+..|..++.+.+.|.-....++++-.... ..+. -+++++++++ +
T Consensus 1 KVlvvGaGglG~e~lk~La~~Gvg~i~ivD~D~Ie~SNLnRQfLf~~~diGk~Ka~~a~~~l~~~Np~v~I~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 98998888889999999998289859997199226101466827682218870999999999988889679986167668
Q ss_pred ---CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEE-ECCCCC
Q ss_conf ---16877555544112217776665555332035685055-237520
Q gi|254781039|r 68 ---DHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEII-ICSKGF 111 (329)
Q Consensus 68 ---~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii-~~sKGi 111 (329)
+.+.+++.|+|+-|+-....|..+.+..-.. +.++| +-+-|+
T Consensus 81 ~~~~~~f~~~~DvVi~alDN~~aR~~vN~~C~~~--~~PlIegGt~G~ 126 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAA--DVPLIESGTTGF 126 (312)
T ss_pred CCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHC--CCCEEEEECCCC
T ss_conf 6434988962999997667899999999999983--997597202464
No 258
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.30 E-value=0.037 Score=33.76 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=29.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8779997788789999999997799818999449
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
|..|+|+|+|--|.++|..|+++| .+|.++.++
T Consensus 1 m~DV~IvGaG~vGl~lAl~La~~g-~~v~lie~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKG-IKTTIFESK 33 (374)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
T ss_conf 962999996699999999998579-969999789
No 259
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.29 E-value=0.031 Score=34.20 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=28.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 779997788789999999997799818999449
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
.-|.|||+|..|.+.|..|++.| .+|.+..+.
T Consensus 4 ~DVvVIGaGi~G~s~A~~La~~G-~~V~vle~~ 35 (377)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARAG-LRVLGIDRF 35 (377)
T ss_pred EEEEEECCCHHHHHHHHHHHHCC-CCEEEECCC
T ss_conf 48999995299999999999789-959999289
No 260
>PRK08643 acetoin reductase; Validated
Probab=95.28 E-value=0.067 Score=32.06 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=34.1
Q ss_pred CCEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 8779997--788789999999997799818999449899999997
Q gi|254781039|r 4 YSTIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 4 ~~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|+|+++| |++-+|.++|..|++.| .+|.+.+|+++..+...+
T Consensus 1 mnKvalVTGg~~GIG~aia~~la~~G-a~V~i~d~~~~~~~~~~~ 44 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDG-FKVAIVDYNEETAKAAAD 44 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 98499995757889999999999879-999999698899999999
No 261
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=95.27 E-value=0.00089 Score=44.24 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=72.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH--------HHHHHHHCCCCCCCCCCC---CCCCCEEEEECHHHH
Q ss_conf 877999778878999999999779981899944989--------999999778984227988---178743897316877
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI--------LMQQLEDTRINAKALPGI---KLSPLLNFSSDHTLL 72 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~--------~~~~i~~~~~n~~~lp~i---~l~~~i~~t~~~~~l 72 (329)
-+.|+|+|||-||--||.+=.++|. ++.|-+-++. +.+.+|+. ...+.+..+ .+-.++..+-|...+
T Consensus 337 Vk~~avlGAGLMGAGIaqVsvDKG~-~tvlkDat~~gl~RGq~Qv~kgLn~~-VKrk~i~~lErd~i~~~L~~~lDY~~f 414 (740)
T TIGR02441 337 VKTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATEAGLDRGQQQVFKGLNKK-VKRKKITSLERDSILSNLTPTLDYSGF 414 (740)
T ss_pred CCEEEEECCCCCCCCEEEEEEECCC-EEEECCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 2237886134002724899981771-46320044678873288898642233-346675454466688615654153330
Q ss_pred HHHHHHHCCCCH--HHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 555544112217--776665555332035685055237520
Q gi|254781039|r 73 QNADIVLFATSS--KGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 73 ~~adiIiiavps--~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
++||+||-||=- +-=..+++++...+.++++|-|-|--|
T Consensus 415 ~~AD~vIEAVFEDl~~KH~ViKe~EaVvp~hciiAsNTSAl 455 (740)
T TIGR02441 415 KNADVVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSAL 455 (740)
T ss_pred CCCCEEEEEEECCCCCCCEEEEEEEEECCCCCEEECCCCCC
T ss_conf 01777899762353104134545520058873572055536
No 262
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.23 E-value=0.049 Score=32.96 Aligned_cols=69 Identities=26% Similarity=0.289 Sum_probs=47.6
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEE--EECHHHHHHHHHHHCC
Q ss_conf 77999778-87899999999977998189994498999999977898422798817874389--7316877555544112
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF--SSDHTLLQNADIVLFA 81 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~--t~~~~~l~~adiIiia 81 (329)
+||+|||| |.-|+.|+.-..+.| |+|+-+.||+..+... . ++..-+.-.+ +...+.+.+-|.||-+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn~~K~~~~--~--------~~~i~q~Difd~~~~a~~l~g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVRNASKLAAR--Q--------GVTILQKDIFDLTSLASDLAGHDAVISA 69 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCC-CEEEEEEECHHHCCCC--C--------CCEEECCCCCCHHHHHHHHCCCCEEEEE
T ss_conf 907899537456799999998679-8048998076766522--3--------5302000222745667663587669972
Q ss_pred CCH
Q ss_conf 217
Q gi|254781039|r 82 TSS 84 (329)
Q Consensus 82 vps 84 (329)
+-.
T Consensus 70 ~~~ 72 (211)
T COG2910 70 FGA 72 (211)
T ss_pred CCC
T ss_conf 157
No 263
>PRK08223 hypothetical protein; Validated
Probab=95.21 E-value=0.03 Score=34.31 Aligned_cols=103 Identities=13% Similarity=0.131 Sum_probs=60.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC-CCC--CCC--------CCCCCCEEE-------
Q ss_conf 87799977887899999999977998189994498999999977898-422--798--------817874389-------
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRIN-AKA--LPG--------IKLSPLLNF------- 65 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n-~~~--lp~--------i~l~~~i~~------- 65 (329)
-++|.|+|+|..|+..+..|+..|.-++.|.+.|.-....+|+.-.+ ..- .|. ..+++.+++
T Consensus 27 ~s~VlVvG~GGlGs~~a~~LAraGVG~i~lvD~D~velSNLnRQi~~~~~diG~~Kveva~e~l~~INP~v~V~~~~~~l 106 (287)
T PRK08223 27 NSRVAIAGLGGVGGVHLLTLARLGIGKFNIADFDVFELVNSNRQYGAMMSSNGRPKVEVMREIALDINPELEIRAFPEGI 106 (287)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 59689993675579999999982897599974998463440222344743449858999999999869898799958789
Q ss_pred --EECHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECC
Q ss_conf --73168775555441122177--76665555332035685055237
Q gi|254781039|r 66 --SSDHTLLQNADIVLFATSSK--GYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 66 --t~~~~~l~~adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
.+..+.++++|+|+=++--+ ..|..+..-.-. .+.++|+.+
T Consensus 107 t~~N~~~~l~~~DvVvDg~DnF~~~tR~ll~~ac~~--~giP~v~~a 151 (287)
T PRK08223 107 GKENLDTFLDGVDVYVDGLDFFVFDIRRLLFREAQA--RGIPALTAA 151 (287)
T ss_pred CHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEC
T ss_conf 989999998679999979667883189999999998--599849831
No 264
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=95.17 E-value=0.074 Score=31.78 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=32.9
Q ss_pred CCEEEEE-C-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 8779997-7-88789999999997799818999449899999997
Q gi|254781039|r 4 YSTIFVI-G-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 4 ~~kI~Vi-G-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|.|+++| | ++..|.++|..|+++| .+|.+.+|+++..+...+
T Consensus 1 mnKvalITG~s~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~ 44 (259)
T PRK12384 1 MNKVAVVIGGGQTLGAFLCHGLAEEG-YRVAVADINSEKAANVAQ 44 (259)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 99789994688689999999999879-999999798899999999
No 265
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.16 E-value=0.049 Score=32.95 Aligned_cols=37 Identities=35% Similarity=0.536 Sum_probs=32.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 98887799977887899999999977998189994498
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|..+.+|+|||+|-.|.+.|..|++.| .+|.++.+++
T Consensus 1 ~~~~~~vvIIGgGi~Gls~A~~La~~G-~~V~vie~~~ 37 (387)
T COG0665 1 MSMKMDVVIIGGGIVGLSAAYYLAERG-ADVTVLEAGE 37 (387)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
T ss_conf 997643999898699999999999769-9199991798
No 266
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.14 E-value=0.056 Score=32.57 Aligned_cols=41 Identities=32% Similarity=0.449 Sum_probs=31.3
Q ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHCCC
Q ss_conf 9977887899999999977998189994498-----99999997789
Q gi|254781039|r 8 FVIGAGAFGTALSSVIASRGLANVTLLGRKE-----ILMQQLEDTRI 49 (329)
Q Consensus 8 ~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~-----~~~~~i~~~~~ 49 (329)
.|+|.|.=|.+.|..|.++| .+|++|+.++ +..+.+...+.
T Consensus 4 ~V~GlG~sG~s~a~~L~~~G-~~v~~~D~~~~~~~~~~~~~L~~~gi 49 (459)
T PRK02705 4 HVIGLGRSGIAAARLLKAQG-WEVVVSERNDSPELLERQQELEQEGI 49 (459)
T ss_pred EEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99954899999999999789-95999989899234789999987598
No 267
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.13 E-value=0.048 Score=33.02 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=31.4
Q ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 9888--7799977887899999999977998189994498
Q gi|254781039|r 1 MKNY--STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 1 M~~~--~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|+++ +||.|+|.|.=|.+.+..|.++| .+|.+|+.++
T Consensus 1 ~~d~~~k~v~V~GlG~sG~s~~~~L~~~G-~~v~~~D~~~ 39 (438)
T PRK03806 1 MADYQGKNVVIIGLGLTGLSCVDFFLARG-VTPRVMDTRM 39 (438)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCC
T ss_conf 97778998999945788899999999789-9699998999
No 268
>PRK07045 putative monooxygenase; Reviewed
Probab=95.10 E-value=0.045 Score=33.20 Aligned_cols=37 Identities=35% Similarity=0.616 Sum_probs=32.4
Q ss_pred CCC-CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 988-87799977887899999999977998189994498
Q gi|254781039|r 1 MKN-YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 1 M~~-~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|++ ..+|.|+|+|-=|.++|..|++.| ++|+++.+.+
T Consensus 1 m~~~~~dVlIvGaG~aGl~lA~~L~r~G-~~v~v~E~~~ 38 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARG-HSVTVVERAA 38 (388)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC
T ss_conf 9989985899992889999999998679-9899990899
No 269
>PRK08017 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.11 Score=30.76 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=33.7
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC
Q ss_conf 7999778-878999999999779981899944989999999778
Q gi|254781039|r 6 TIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR 48 (329)
Q Consensus 6 kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~ 48 (329)
.|.|-|+ +-.|.++|..|+++| .+|.+.+|+++.++.+++.+
T Consensus 4 ~vlITGassGIG~a~A~~la~~G-~~V~~~~r~~~~l~~~~~~~ 46 (256)
T PRK08017 4 SVLITGCSSGIGLESALELKRQG-FRVLAGCRKPDDVARMNSMG 46 (256)
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCC
T ss_conf 89996587689999999999879-99999969989999998569
No 270
>pfam02629 CoA_binding CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Probab=95.08 E-value=0.11 Score=30.60 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=52.7
Q ss_pred CCCEEEEECCCHHHHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE-ECHHHHHH--HHHH
Q ss_conf 887799977887899999999-9779981899944989999999778984227988178743897-31687755--5544
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVI-ASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS-SDHTLLQN--ADIV 78 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~L-a~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t-~~~~~l~~--adiI 78 (329)
+..++.++|+|+.|+|++.+. ...+..-+.+++.|+... +... -++ .+. +..+..++ .|+-
T Consensus 2 ~~~~v~liG~g~lG~al~~~~~~~~~~~i~~vfdv~p~~~------G~~i---~gi------pv~~~l~~~~~~~~idia 66 (96)
T pfam02629 2 KDTKVAVIGASGLGIQGLYHFIQLLGYGIKMVFGVNPRKG------GTEV---GGI------PVYKSVDELEEDTGVDVA 66 (96)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCC------CCEE---CCE------EEECCHHHHHHCCCCCEE
T ss_conf 9774999998982788877688771486189980692427------7588---899------843108777415588789
Q ss_pred HCCCCHHHHHHHHHHHHH
Q ss_conf 112217776665555332
Q gi|254781039|r 79 LFATSSKGYGEALNFYSN 96 (329)
Q Consensus 79 iiavps~~~~~~l~~i~~ 96 (329)
+++||+....+++.++-.
T Consensus 67 ii~VP~~~a~~~~~~~v~ 84 (96)
T pfam02629 67 VITVPAPFAQEAIDELVD 84 (96)
T ss_pred EEEECHHHHHHHHHHHHH
T ss_conf 999478998999999998
No 271
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.04 E-value=0.028 Score=34.53 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=26.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8877999778878999999999779981899944
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGR 36 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r 36 (329)
-|+||.|+|.|.=|-+.|..|.+++ ..|.++..
T Consensus 6 ~~KkvlV~GlG~sG~s~a~~L~~~~-~~~~v~~~ 38 (438)
T PRK04663 6 GIKNVVVVGLGITGLSVVKHLRKTQ-PQLTVKVI 38 (438)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 9974999906785899999999669-98469996
No 272
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.04 E-value=0.087 Score=31.33 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=29.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 7799977887899999999977998189994498
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
+||.|+|.|-=|.|+|..|.+.| ++|..|+.++
T Consensus 15 kkv~i~GlG~sG~a~a~~L~~~g-~~v~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AKVTAFDKKS 47 (458)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCC
T ss_conf 96999978788999999999788-9799998988
No 273
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.00 E-value=0.044 Score=33.22 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=33.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHH
Q ss_conf 7799977887899999999977998189994498--99999997
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE--ILMQQLED 46 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~--~~~~~i~~ 46 (329)
++|.|+|.|.=|.+.+..|.++| ++|.+|+.++ +....+.+
T Consensus 6 k~v~viGlG~sG~s~a~~L~~~G-~~v~~~D~~~~~~~~~~~~~ 48 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG-AEVAAYDAELKAERVAQIGK 48 (445)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCHHHHHHH
T ss_conf 98999998999999999999789-91999979999531899974
No 274
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.98 E-value=0.056 Score=32.57 Aligned_cols=83 Identities=25% Similarity=0.405 Sum_probs=55.7
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH
Q ss_conf 988877999778-8789999999997799818999449899999997789842279881787438973168775555441
Q gi|254781039|r 1 MKNYSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVL 79 (329)
Q Consensus 1 M~~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIi 79 (329)
|+ .||+|+|+ |.-|.-|...|+.. .+|.++...++. +. +. ....+.+.++|++|
T Consensus 1 M~--~kV~I~GasGytG~EL~rlL~~H--p~vel~~i~~~~-------~k------~~--------~~~~~~~~~~DvvF 55 (314)
T PRK11863 1 MK--PKVFIDGEAGTTGLQIRERLAGR--SDIELLSIPEAK-------RK------DP--------AARRELLNAADIAI 55 (314)
T ss_pred CC--CEEEEECCCCCHHHHHHHHHHCC--CCEEEEEECCCC-------CC------CH--------HHHHHHHHCCCEEE
T ss_conf 98--26999899885699999999759--982999967112-------55------75--------56787750699999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 12217776665555332035685055237520
Q gi|254781039|r 80 FATSSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 80 iavps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
+|+|...-.+....+. ..+..||.++--|
T Consensus 56 lalPh~~s~~~v~~~~---~~g~kVIDLSaDf 84 (314)
T PRK11863 56 LCLPDDAAREAVALID---NPATRVIDASTAH 84 (314)
T ss_pred ECCCCHHHHHHHHHHH---HCCCEEEECCCCC
T ss_conf 9999778999999886---2798899898544
No 275
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.92 E-value=0.049 Score=32.97 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=29.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCHH
Q ss_conf 877999778878999999999779-981899944989
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRG-LANVTLLGRKEI 39 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g-~~~V~l~~r~~~ 39 (329)
|+||.|||+|.=|...|..+.+.+ ..+|+++.+++.
T Consensus 1 M~kiVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~ 37 (438)
T PRK13512 1 MPKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 9809998984999999999994391999999968998
No 276
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.92 E-value=0.048 Score=32.98 Aligned_cols=34 Identities=32% Similarity=0.569 Sum_probs=30.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 988877999778878999999999779981899944
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGR 36 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r 36 (329)
|+++ .|+|+|+|--|.++|..|++.| .+|.++.+
T Consensus 1 M~~~-DV~IvGaG~vGl~lAl~La~~G-~~V~iiE~ 34 (384)
T PRK08849 1 MNKY-DIAVVGGGMVGAATAIGFAKQG-RSVAVIEG 34 (384)
T ss_pred CCCC-CEEEECCCHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 9818-9999992499999999999579-95999968
No 277
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=94.87 E-value=0.041 Score=33.45 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=28.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 799977887899999999977998189994498
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
-|+|||+|-+|.+.|..|++.| .+|.+..|+.
T Consensus 2 Dv~VIGaGi~Gls~A~~La~~G-~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRG-LSVTVIERSS 33 (365)
T ss_pred CEEEECCHHHHHHHHHHHHHCC-CCEEEECCCC
T ss_conf 2999993299999999999789-9499998999
No 278
>PRK07588 hypothetical protein; Provisional
Probab=94.84 E-value=0.043 Score=33.31 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=30.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 77999778878999999999779981899944989
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
+||.|+|+|-=|.++|..|.+.| ++|+++.|.++
T Consensus 1 mkVlIvGaGiaGLalA~~L~r~G-~~v~V~Er~~~ 34 (391)
T PRK07588 1 MKIAISGAGIAGATLAHWLQRTG-HEPTLIERAPK 34 (391)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 97999993289999999998689-99899903898
No 279
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=94.84 E-value=0.06 Score=32.39 Aligned_cols=96 Identities=23% Similarity=0.254 Sum_probs=62.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHCC---CCCCCCCCCCCCCCEEEEE-CHHHHHH--H
Q ss_conf 887799977887899999999977-9981899944989999999778---9842279881787438973-1687755--5
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASR-GLANVTLLGRKEILMQQLEDTR---INAKALPGIKLSPLLNFSS-DHTLLQN--A 75 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~-g~~~V~l~~r~~~~~~~i~~~~---~n~~~lp~i~l~~~i~~t~-~~~~l~~--a 75 (329)
+-++|.|||||-=+-|+|..|.+. + .+|.+.-|..++.+++-+.- .|.+| ..+.+.+ +...++. -
T Consensus 120 ~~~~~li~GAGGAa~a~a~~L~~~t~-~~~~i~NRT~~ka~~La~~~~~kln~~~-------G~~~~~~~~~~~l~~G~~ 191 (286)
T TIGR00507 120 PNQRVLIIGAGGAAKAVALELLKATD-CNVIIANRTVEKAEELAERFQRKLNKKY-------GEIQAFSLDEVPLHKGKV 191 (286)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHHHHC-------CCEEEEECCCCCCCCCCE
T ss_conf 99779999428678999999986009-9789982877899999999898853424-------853652113355557856
Q ss_pred HHHHCCCCHHHHHHH--HHHHHHHCCCCCCEEE
Q ss_conf 544112217776665--5553320356850552
Q gi|254781039|r 76 DIVLFATSSKGYGEA--LNFYSNWLKESAEIII 106 (329)
Q Consensus 76 diIiiavps~~~~~~--l~~i~~~l~~~~~ii~ 106 (329)
|+||=|+|+.-..+. ..--..++++...+..
T Consensus 192 DlIINATs~G~~~~~~~~~v~~~~~~~~~~v~D 224 (286)
T TIGR00507 192 DLIINATSAGMSGNIDEPPVPAELLKEGKLVYD 224 (286)
T ss_pred EEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEE
T ss_conf 799854677888898874568534168868995
No 280
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.75 E-value=0.045 Score=33.19 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=29.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 7799977887899999999977998189994498
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
.||+|||+|-=|.+-|..|++.| |+|++|.+-+
T Consensus 433 gKVAVIGsGPAGLs~A~~Lar~G-~~VTVfEal~ 465 (993)
T PRK12775 433 GKVAIVGSGPAGLAAAADLTRYG-VETTVYEALH 465 (993)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC
T ss_conf 80899783788999999999779-9648971688
No 281
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=94.68 E-value=0.23 Score=28.60 Aligned_cols=105 Identities=19% Similarity=0.284 Sum_probs=66.3
Q ss_pred EEEEECCCHHHHHHHH-HHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCC----CCCCCEEEEE--C----HHHHHH
Q ss_conf 7999778878999999-999779981899944989999999778984227988----1787438973--1----687755
Q gi|254781039|r 6 TIFVIGAGAFGTALSS-VIASRGLANVTLLGRKEILMQQLEDTRINAKALPGI----KLSPLLNFSS--D----HTLLQN 74 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~-~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i----~l~~~i~~t~--~----~~~l~~ 74 (329)
|+.-+|+|++|-++-. .|.++|+ +|...+.++..++.||+.+.=...+-+- ..-+++++-+ + .+.+.+
T Consensus 2 KavhFGAGNigRGFI~~ll~~~g~-~v~Fvdvn~~li~~Ln~~~~Y~v~~~g~~~~~~~V~~v~ai~~~~~~~v~~~i~~ 80 (381)
T PRK02318 2 KALHFGAGNIGRGFIGKLLADNGF-EVTFADVNQEIIDALNKRKSYQVIVVGEGEQVETVSNVSAINSKDEEAVIELIAE 80 (381)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHCCCCEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHC
T ss_conf 469978742212668999997797-6999958788999986069858999338862699977899868998999999845
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCC--------CCCCEEECCCCC
Q ss_conf 5544112217776665555332035--------685055237520
Q gi|254781039|r 75 ADIVLFATSSKGYGEALNFYSNWLK--------ESAEIIICSKGF 111 (329)
Q Consensus 75 adiIiiavps~~~~~~l~~i~~~l~--------~~~~ii~~sKGi 111 (329)
+|+|-.++.+..++.+...+.+.+. +...|+.|-..+
T Consensus 81 aDiiTt~vGp~~l~~ia~~ia~~L~~R~~~~~~~~l~IiaCEN~~ 125 (381)
T PRK02318 81 ADLITTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMI 125 (381)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
T ss_conf 898996458255677779999999999843799980899725641
No 282
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.62 E-value=0.19 Score=29.12 Aligned_cols=45 Identities=29% Similarity=0.472 Sum_probs=37.9
Q ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC
Q ss_conf 9888779997788-78999999999779981899944989999999778
Q gi|254781039|r 1 MKNYSTIFVIGAG-AFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR 48 (329)
Q Consensus 1 M~~~~kI~ViGaG-a~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~ 48 (329)
|+ ++|.|.|+. -+|-++|..|+++| .+|.+++|+++..+++.++.
T Consensus 1 M~--~~VlITGassGIG~a~A~~la~~G-~~v~l~~R~~~~L~~~~~~~ 46 (256)
T PRK07024 1 MP--LKVFITGASSGIGQALAREYARQG-ATLGLVARRTDALQAFAARL 46 (256)
T ss_pred CC--CEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHC
T ss_conf 99--989998460299999999999889-98999989889999999976
No 283
>PRK07707 consensus
Probab=94.60 E-value=0.11 Score=30.69 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=34.7
Q ss_pred CCEEEEE--CCCHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHHHC
Q ss_conf 8779997--78878999999999779981899-94498999999977
Q gi|254781039|r 4 YSTIFVI--GAGAFGTALSSVIASRGLANVTL-LGRKEILMQQLEDT 47 (329)
Q Consensus 4 ~~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l-~~r~~~~~~~i~~~ 47 (329)
|+|+++| |++-.|.++|..|++.|. +|.+ |.++++..+.+.++
T Consensus 1 M~KvalVTG~s~GIG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~~ 46 (239)
T PRK07707 1 MKKYALVTGASGGIGQAISKQLAQDGY-TVYLHYNNNEEKVNELQEE 46 (239)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEECCCCHHHHHHHHHH
T ss_conf 998999966887899999999998799-8999839998999999998
No 284
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.59 E-value=0.09 Score=31.23 Aligned_cols=89 Identities=22% Similarity=0.385 Sum_probs=55.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCC-----------------CCCCCCCCCC-CEEEEE
Q ss_conf 7999778878999999999779981899944989999999778984-----------------2279881787-438973
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINA-----------------KALPGIKLSP-LLNFSS 67 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~-----------------~~lp~i~l~~-~i~~t~ 67 (329)
||.|+|+|..|+-+++.|+..|..++.+.+.|.-....+++.-... +.-|++++.. .-++.+
T Consensus 1 kvlvvG~GglG~e~~k~la~~Gvg~i~ivD~d~i~~sNL~rQflf~~~dvG~~Ka~~a~~~i~~~np~v~v~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 98999288889999999998489859997399344135656746765536878999999999987899789985053100
Q ss_pred -CHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf -168775555441122177766655553
Q gi|254781039|r 68 -DHTLLQNADIVLFATSSKGYGEALNFY 94 (329)
Q Consensus 68 -~~~~l~~adiIiiavps~~~~~~l~~i 94 (329)
+.+..++.|+|+.++-...-|..++..
T Consensus 81 ~~~~f~~~fdvVi~~lDn~~aR~~vN~~ 108 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIEARRWINGT 108 (291)
T ss_pred CCHHHHHHCCEEEECCCCHHHHHHHHHH
T ss_conf 7898995199999887899999999999
No 285
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.55 E-value=0.079 Score=31.60 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=26.6
Q ss_pred CCC--CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 988--877999778878999999999779981899944
Q gi|254781039|r 1 MKN--YSTIFVIGAGAFGTALSSVIASRGLANVTLLGR 36 (329)
Q Consensus 1 M~~--~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r 36 (329)
|+. .+||+|+|.|.=|.|.+..|.+.+ .+..|+.
T Consensus 1 ~~~~~~K~v~V~GlG~sG~a~~~~L~~~~--~~~~~dd 36 (450)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQNKY--DLIVYDD 36 (450)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHCC--CEEEEEC
T ss_conf 97668990899958787999999997199--9899989
No 286
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.55 E-value=0.16 Score=29.66 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=32.5
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 779997--7887899999999977998189994498999999977
Q gi|254781039|r 5 STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
.|+++| |++..|.++|..|+++| .+|.+++|+++..+.+.+.
T Consensus 5 ~Kv~lITGgs~GIG~a~a~~la~~G-~~V~~~~r~~~~l~~~~~~ 48 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG-ARVVIYDSNEEAAEALAEE 48 (246)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 9889993897589999999999879-9999997999999999999
No 287
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=94.50 E-value=0.033 Score=34.04 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=24.3
Q ss_pred ECCCHHHHHH---HHHHHHCCCCEEEEEECC-------HHHHHHHHHCCCCCC
Q ss_conf 7788789999---999997799818999449-------899999997789842
Q gi|254781039|r 10 IGAGAFGTAL---SSVIASRGLANVTLLGRK-------EILMQQLEDTRINAK 52 (329)
Q Consensus 10 iGaGa~GtAl---A~~La~~g~~~V~l~~r~-------~~~~~~i~~~~~n~~ 52 (329)
|=+|+=||++ .-.|+-.+ -++++.+.. ..+++.+++-+.+..
T Consensus 326 ld~GNSGTt~RLL~Glla~~~-~~~~ltGD~SL~kRPM~rvi~pL~~mGA~I~ 377 (673)
T PRK11861 326 LFLGNAGTAVRPLTAALAVNG-GEYRIHGVPRMHERPIGDLVDGLRQIGARID 377 (673)
T ss_pred EEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHCCCHHHHHHHHHHCCCEEE
T ss_conf 560585068999999996799-7499988767764986799999997799399
No 288
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.41 E-value=0.17 Score=29.47 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=16.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 7653212467731789999997534
Q gi|254781039|r 146 QGLPVGVILSSKNIDISRRLSKILT 170 (329)
Q Consensus 146 ~~~pt~~~ia~~d~~~~~~i~~~~~ 170 (329)
+.....+++.+++.+.++.+++.+.
T Consensus 143 ~~G~~~i~I~nR~~~~a~~L~~~~~ 167 (272)
T PRK12550 143 DAGFTDGTIVARNEKTGKALAELYG 167 (272)
T ss_pred HCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 7699879999899899999998739
No 289
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=94.33 E-value=0.059 Score=32.42 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=30.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 779997788789999999997799818999449899
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL 40 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~ 40 (329)
+||+|||||.=|.+-++.|.+.| .+++++.+++++
T Consensus 2 KrVAIIGAG~SGL~a~K~lle~G-~~~~~FE~~~~i 36 (532)
T pfam00743 2 KKVAVIGAGVSGLSSIKCCLEEG-LEPTCFERSDDI 36 (532)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCC
T ss_conf 87999897299999999998779-982999779997
No 290
>PRK12746 short chain dehydrogenase; Provisional
Probab=94.31 E-value=0.15 Score=29.86 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=34.5
Q ss_pred CCCC-CEEEEE--CCCHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHHH
Q ss_conf 9888-779997--78878999999999779981899-9449899999997
Q gi|254781039|r 1 MKNY-STIFVI--GAGAFGTALSSVIASRGLANVTL-LGRKEILMQQLED 46 (329)
Q Consensus 1 M~~~-~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l-~~r~~~~~~~i~~ 46 (329)
|+++ .|+++| |++..|.++|..|++.| .+|.+ |.|+++..+...+
T Consensus 1 M~~l~gKvalITGga~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~~ 49 (254)
T PRK12746 1 MKNLDGKVALVTGASRGIGRAIAMRLANDG-ALVAIHYGRNKAAADETIR 49 (254)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHH
T ss_conf 969999889994847689999999999879-9999965999899999999
No 291
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=94.29 E-value=0.095 Score=31.06 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=31.3
Q ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9888-779997788789999999997799818999449
Q gi|254781039|r 1 MKNY-STIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 1 M~~~-~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
|++. ..|.|+|+|--|.++|..|++.| .+|.++.+.
T Consensus 1 M~~~~~DV~IvG~G~vGl~lAl~La~~G-~~V~viE~~ 37 (391)
T PRK08020 1 MTNQPTEIAIVGGGMVGGALALGLAQHG-FSVAVIEHA 37 (391)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 9999984899993699999999998669-978999489
No 292
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.29 E-value=0.11 Score=30.61 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=49.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHH---HHHHHHHCC
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877---555544112
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLL---QNADIVLFA 81 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l---~~adiIiia 81 (329)
.++.|+|+|..|...+..+...|..+|.+.++++...+...+-+.... +++.. ..+..... ..+|++|-+
T Consensus 122 ~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a~~~Ga~~~------i~~~~-~~~~~~~~~~g~g~D~vie~ 194 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATAL------AEPEV-LAERQGGLQNGRGVDVALEF 194 (280)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEE------ECCCC-HHHHHHHHHCCCCCCEEEEC
T ss_conf 989999078689999999998499879999199899999997399898------37757-79999997278887099987
Q ss_pred CCHH-HHHHHHHHHHH
Q ss_conf 2177-76665555332
Q gi|254781039|r 82 TSSK-GYGEALNFYSN 96 (329)
Q Consensus 82 vps~-~~~~~l~~i~~ 96 (329)
+.+. .+++.++.+++
T Consensus 195 ~G~~~~~~~a~~~l~~ 210 (280)
T TIGR03366 195 SGATAAVRACLESLDV 210 (280)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 8988999999998604
No 293
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.28 E-value=0.037 Score=33.73 Aligned_cols=93 Identities=24% Similarity=0.261 Sum_probs=57.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHH------H
Q ss_conf 988877999778878999999999779981-89994498999999977898422798817874389731-687------7
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLAN-VTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTL------L 72 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~-V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~------l 72 (329)
|.+.-|++|||+|+.||=|-.-+-+..+-+ +.+.+||++- +.+.+-+. | |++ +++. .+. .
T Consensus 1 ~~~k~~vAIiGsGnIGtDLm~Ki~Rs~~le~~~~vG~dp~S-~GL~rA~~----l-Gv~------ts~~GId~ll~~~~~ 68 (298)
T PRK08300 1 MMSKIKVAIIGSGNIGTDLMIKILRSPHLEPVAMVGIDPES-DGLARARR----L-GVA------TTAEGIDGLLAHPEF 68 (298)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCCC-HHHHHHHH----C-CCC------CCCCCHHHHHHCCCC
T ss_conf 98753499988883389999998657761069998059898-49999998----4-996------637679999618335
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 555544112217776665555332035685055237
Q gi|254781039|r 73 QNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 73 ~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
.+.|++|=|++...+..-.+.+++. +..+|.+|
T Consensus 69 ~~idiVFDATSA~aH~~h~~~l~~~---g~~~IDLT 101 (298)
T PRK08300 69 DDIDIVFDATSAGAHVENAAKLREL---GVRVIDLT 101 (298)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHC---CCEEEECC
T ss_conf 6878899789806689999999973---98799677
No 294
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.24 E-value=0.45 Score=26.68 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=52.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE-E-CHHHHHH-HHHHHC
Q ss_conf 877999778878999999999779981899944989999999778984227988178743897-3-1687755-554411
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS-S-DHTLLQN-ADIVLF 80 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t-~-~~~~l~~-adiIii 80 (329)
-++|+|+|+|..|..-.+.+..-| .+|..++|+++..+...+-+...- +..+ . ..+.+++ +|+++.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~----------i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHV----------INSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCEE----------EECCCCHHHHHHHHHCCEEEE
T ss_conf 989999877489999999999869-969999578779999998488289----------976781166776734739999
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 2217776665555332
Q gi|254781039|r 81 ATSSKGYGEALNFYSN 96 (329)
Q Consensus 81 avps~~~~~~l~~i~~ 96 (329)
++|...+.+.++.+++
T Consensus 236 tv~~~~~~~~l~~l~~ 251 (339)
T COG1064 236 TVGPATLEPSLKALRR 251 (339)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 8774559999998642
No 295
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.23 E-value=0.21 Score=28.84 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=37.1
Q ss_pred CCCCCEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 9888779997--7887899999999977998189994498999999977
Q gi|254781039|r 1 MKNYSTIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 1 M~~~~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|+...|+++| |++-.|-++|..|++.| .+|.+.+|+++..+...++
T Consensus 1 M~~~GKvalITGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~~ 48 (235)
T PRK07326 1 MSGNGKAALVTGGSKGIGFAVAEALAAAG-YRVAICARDESELEAAAQE 48 (235)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 99999899993826799999999999879-9999998988999999998
No 296
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.20 E-value=0.094 Score=31.12 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=29.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 877999778878999999999779981899944
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGR 36 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r 36 (329)
-+++.|+|+|+.|+.+|..|+..+..+|.+|+|
T Consensus 23 ~~~v~v~G~G~vg~~ia~ll~~~~~k~V~~~d~ 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEECCC
T ss_conf 758999778604289999999817970787155
No 297
>PRK11728 hypothetical protein; Provisional
Probab=94.19 E-value=0.081 Score=31.51 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=30.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCHHHH
Q ss_conf 877999778878999999999779-98189994498999
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRG-LANVTLLGRKEILM 41 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g-~~~V~l~~r~~~~~ 41 (329)
|.-+.|||+|-.|+|+|..|++.. ..+|.+..++++..
T Consensus 2 ~yDvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g 40 (400)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPA 40 (400)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 530999996799999999999559998399996899975
No 298
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.19 E-value=0.055 Score=32.62 Aligned_cols=94 Identities=22% Similarity=0.248 Sum_probs=61.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE---ECHHHHHHHHHHHCC
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897---316877555544112
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS---SDHTLLQNADIVLFA 81 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t---~~~~~l~~adiIiia 81 (329)
.+++|||+|--|+-=|+...--| .+|++.+++.+...++..... .++. ...+ +..+.+..+|++|-|
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~~rl~~ldd~f~-------~rv~--~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNIDRLRQLDDLFG-------GRVH--TLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCEEEECCCCCCCHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHC-------CEEE--EEECCHHHHHHHHHHCCEEEEE
T ss_conf 60899877612406999972368-706999527788764067657-------6669--9975899999874312679888
Q ss_pred CCHHH---HHHHHHHHHHHCCCCCCEEECC
Q ss_conf 21777---6665555332035685055237
Q gi|254781039|r 82 TSSKG---YGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 82 vps~~---~~~~l~~i~~~l~~~~~ii~~s 108 (329)
|-..+ =.-+.++.-+.+++...||.++
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEECCCCCCEEHHHHHHHHCCCCCEEEEEE
T ss_conf 884588786010699997447985899998
No 299
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.13 E-value=0.24 Score=28.50 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=36.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC
Q ss_conf 779997788789999999997799818999449899999997789
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRI 49 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~ 49 (329)
+||.|+|.|.=|.+.|..|.+.| .+|.+|+.+++........+.
T Consensus 10 k~v~v~GlG~sG~s~a~~L~~~G-~~V~~~D~~~~~~~~~~~~g~ 53 (457)
T PRK01390 10 KTVALFGLGGSGLATARALKAGG-AEVIAWDDNPDSVAKAAAAGI 53 (457)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHCCC
T ss_conf 98999943699999999999789-979999399206689987598
No 300
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.13 E-value=0.1 Score=30.91 Aligned_cols=36 Identities=17% Similarity=0.539 Sum_probs=31.0
Q ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9888-779997788789999999997799818999449
Q gi|254781039|r 1 MKNY-STIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 1 M~~~-~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
|++| .-|.|+|+|--|.++|..|++.| .+|.++.++
T Consensus 13 ~~~~d~DV~IVGaGp~Gl~lAl~La~~G-i~v~viE~~ 49 (413)
T PRK07364 13 LRSLDYDVVIVGGGIVGLTLAAALKDSG-LRIALIEAQ 49 (413)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 9989899899992799999999998689-988999179
No 301
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.08 E-value=0.11 Score=30.78 Aligned_cols=37 Identities=35% Similarity=0.462 Sum_probs=31.6
Q ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 9888-7799977887899999999977998189994498
Q gi|254781039|r 1 MKNY-STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 1 M~~~-~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|++. .-|.|+|+|--|.++|..|++.| ++|.++.+.+
T Consensus 1 M~~~~~DV~IvGaGp~Gl~lAl~La~~G-~~v~lie~~~ 38 (386)
T PRK07494 1 MEKEHTDIAVSGGGPAGLAAAIALASAG-ASVALVAPAP 38 (386)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC
T ss_conf 9978886899990689999999998789-9889995799
No 302
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.05 E-value=0.23 Score=28.54 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=33.5
Q ss_pred CCCCC-EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 98887-79997--78878999999999779981899944989999999
Q gi|254781039|r 1 MKNYS-TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLE 45 (329)
Q Consensus 1 M~~~~-kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~ 45 (329)
|++.+ |+++| |++-.|.++|..|+++| .+|.+.+|+++..+...
T Consensus 1 M~~L~gK~alITGgs~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~ 47 (253)
T PRK12826 1 MRDLMGRVALVTGAARGIGRAIAVRFAADG-ADVIVVDICGQAAAATA 47 (253)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH
T ss_conf 998899889994897789999999999879-98999989889999999
No 303
>PRK08013 hypothetical protein; Provisional
Probab=94.02 E-value=0.11 Score=30.58 Aligned_cols=35 Identities=23% Similarity=0.514 Sum_probs=30.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9888779997788789999999997799818999449
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
|+++ -|.|+|+|--|.++|..|++.| .+|.++.++
T Consensus 1 M~~~-DV~IvGaGpvGl~lA~~La~~G-~~v~viE~~ 35 (400)
T PRK08013 1 MQSV-DVAIVGGGMVGLAVACGLQGSG-LRVAVLEHR 35 (400)
T ss_pred CCCC-CEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 9967-8899993599999999997189-958999189
No 304
>PRK06270 homoserine dehydrogenase; Provisional
Probab=93.95 E-value=0.15 Score=29.73 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=58.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-------CEEEEEE---CC----------HHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9888779997788789999999997799-------8189994---49----------89999999778984227988178
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGL-------ANVTLLG---RK----------EILMQQLEDTRINAKALPGIKLS 60 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~-------~~V~l~~---r~----------~~~~~~i~~~~~n~~~lp~i~l~ 60 (329)
|+ -||+++|.|..|+++...|.++.. .++.+.. ++ .+.+....+..... . .++
T Consensus 1 m~--i~I~l~G~G~VG~~~~~~l~~~~~~l~~~~g~~l~v~~i~~s~~~~~~~~gid~~~~~~~~~~~~~~---~--~~~ 73 (342)
T PRK06270 1 ME--MKIALVGFGGVGQGLAELLAMKNEYLKKEYGLDLKVVAIADSSGAAIDPNGLDLELALKVKEETGKL---A--DYP 73 (342)
T ss_pred CC--CCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC---C--CCC
T ss_conf 96--3199987688999999999987999999849978999999165433576678989998766411650---0--032
Q ss_pred CCEEEEECHHHHHH--HHHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 74389731687755--55441122177--7666555533203568505523752000
Q gi|254781039|r 61 PLLNFSSDHTLLQN--ADIVLFATSSK--GYGEALNFYSNWLKESAEIIICSKGFEY 113 (329)
Q Consensus 61 ~~i~~t~~~~~l~~--adiIiiavps~--~~~~~l~~i~~~l~~~~~ii~~sKGi~~ 113 (329)
......+..+.+.+ .|+++-++|+. .-+....-+...++.+..+|++-|+.-.
T Consensus 74 ~~~~~~~~~~~~~~~~~dvvve~t~~~~~~~e~a~~~~~~aL~~G~~VVTANK~~la 130 (342)
T PRK06270 74 EGGGEIDGLEVIKSAEADVLVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLA 130 (342)
T ss_pred CCCCCCCHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHH
T ss_conf 000127899984277999899930446777488999999999779949998871789
No 305
>PRK08251 short chain dehydrogenase; Provisional
Probab=93.94 E-value=0.25 Score=28.33 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=35.8
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 877999778-87899999999977998189994498999999977
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
.++|.|.|| +-+|-++|..|+++| ++|.+.+|+++..+++.++
T Consensus 2 ~K~vlITGAssGIG~alA~~la~~G-~~v~l~~r~~~~l~~~~~e 45 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG-RDLALCARRTDRLEELKAE 45 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 9989994786399999999999879-9899998988899999999
No 306
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.93 E-value=0.52 Score=26.26 Aligned_cols=175 Identities=19% Similarity=0.255 Sum_probs=83.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH-----------------HHHHHHHHCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 7799977887899999999977998189994498-----------------99999997789842279881787438973
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE-----------------ILMQQLEDTRINAKALPGIKLSPLLNFSS 67 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~-----------------~~~~~i~~~~~n~~~lp~i~l~~~i~~t~ 67 (329)
.||.|||+|.=|...|..+++.| .+|.++.++. +..+....-+....| ++.++.. ...-
T Consensus 1 ~~vvVIG~GpaG~~aA~~aa~~G-~kV~lIEk~~~GGtCln~GCiPsK~ll~~a~~~~~~~~~~~~--Gi~~~~~-~~~i 76 (458)
T PRK06912 1 SKLVIIGGGPAGYVAAITAAQNG-KEVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDIVRKANHY--GITLNNG-SISI 76 (458)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCC-CCCC
T ss_conf 94999900889999999999785-959999589978740336848789999999999999766745--9501278-7552
Q ss_pred CHHHHH-HHHHHHCCCCHHHHHHHHHHH--------HHHCCCCCCEEEC--------CCCCCCCCCCCC-----------
Q ss_conf 168775-555441122177766655553--------3203568505523--------752000258543-----------
Q gi|254781039|r 68 DHTLLQ-NADIVLFATSSKGYGEALNFY--------SNWLKESAEIIIC--------SKGFEYNSGMLL----------- 119 (329)
Q Consensus 68 ~~~~l~-~adiIiiavps~~~~~~l~~i--------~~~l~~~~~ii~~--------sKGi~~~t~~~~----------- 119 (329)
+.+.+. .-+-++-.. +..++..++.- ..+..++...+.. ++-+...||..+
T Consensus 77 d~~~~~~~~~~~v~~~-~~~~~~~l~~~~v~~i~G~a~f~~~~~v~V~~~~~~~~i~a~~iiIATGs~P~~~p~~~~d~~ 155 (458)
T PRK06912 77 DWKQMQARKSQIVTQL-VQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGGKEEVVDAEQFIIATGSEPTELPFAPFDGK 155 (458)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHCCCEEEECEEEEECCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 8999999999999999-999999997389189915279803886899869961899741899988987746997887887
Q ss_pred -----CHHHH-HHHHHCCCEECCCCCHHHHHHHHHH---HHC--------CCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf -----10123-3210012100128881789987653---212--------467731789999997534111389973886
Q gi|254781039|r 120 -----SSYSE-KVLPSHSISVLSGPGFARDIAQGLP---VGV--------ILSSKNIDISRRLSKILTTDSFRVYCSDDR 182 (329)
Q Consensus 120 -----se~i~-~~~~~~~~~vlsGPs~A~Eia~~~p---t~~--------~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~ 182 (329)
.+.++ +.+| .++.++.|--++-|+|.-.- +.+ .+...|.+.++.+.+.|....++++.+..+
T Consensus 156 ~~~~s~~~~~l~~lP-~~l~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~~~il~~~d~~~~~~l~~~l~~~Gi~i~~~~~v 234 (458)
T PRK06912 156 WILNSSHAMSLPSIP-KSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLEEDGVEIFTGAAL 234 (458)
T ss_pred EEEECHHHCCCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEE
T ss_conf 698465540612279-6599989974799999999965987999984466783056789999999998669599828879
Q ss_pred CEE
Q ss_conf 144
Q gi|254781039|r 183 IGV 185 (329)
Q Consensus 183 ~Gv 185 (329)
..+
T Consensus 235 ~~i 237 (458)
T PRK06912 235 KGL 237 (458)
T ss_pred EEE
T ss_conf 999
No 307
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=93.93 E-value=0.13 Score=30.13 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=30.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9888779997788789999999997799818999449
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
|.+..-|.|+|+|--|.++|..|++.| .+|.++.++
T Consensus 1 M~~~~DV~IvGaGp~Gl~lA~~La~~G-~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKDSD-LRIAVIEGQ 36 (405)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 999876899991589999999998589-978999379
No 308
>PRK06370 mercuric reductase; Validated
Probab=93.91 E-value=0.53 Score=26.22 Aligned_cols=175 Identities=21% Similarity=0.271 Sum_probs=83.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH--------------HH---HHHHHHCCCCCCCCCCCCCCCCEEE
Q ss_conf 887799977887899999999977998189994498--------------99---9999977898422798817874389
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE--------------IL---MQQLEDTRINAKALPGIKLSPLLNF 65 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~--------------~~---~~~i~~~~~n~~~lp~i~l~~~i~~ 65 (329)
+..-+.|||+|.=|.+-|..+++.| .+|.++.++. .. .+.....+. .. .++++.+..+.
T Consensus 3 ~~YDviVIG~GpAG~~AA~~aa~~G-~~V~liEk~~~GG~Cln~GCiPsK~l~~~a~~~~~~~~-~~-~~g~~~~~~~~- 78 (459)
T PRK06370 3 QRYDAVVIGAGQAGPPLAARAAGLG-MKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARR-AA-EYGVSIGGPVA- 78 (459)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHH-HH-CCCCCCCCCCC-
T ss_conf 7175899998889999999999689-91999968997743214683528999999999999977-66-07922588677-
Q ss_pred EECHHHH-HHHHHHHCCCCHHHHHHHHHHHH---------------------HHCCCCCCEEECC---------CCCCCC
Q ss_conf 7316877-55554411221777666555533---------------------2035685055237---------520002
Q gi|254781039|r 66 SSDHTLL-QNADIVLFATSSKGYGEALNFYS---------------------NWLKESAEIIICS---------KGFEYN 114 (329)
Q Consensus 66 t~~~~~l-~~adiIiiavps~~~~~~l~~i~---------------------~~l~~~~~ii~~s---------KGi~~~ 114 (329)
-+.+.+ ...+-+.-.. +......++... ..++. ..+|.+| .|++..
T Consensus 79 -~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~gv~~~~G~a~f~~~~tv~v~~~~~~a-~~iiIATGs~p~~p~ipG~~~~ 155 (459)
T PRK06370 79 -VDFKAVMARKRRIRARS-RNGSEQWFRGLDGVDVFRGHARFEGPNTVRVGGELLRA-KRIFINTGARAAVPPIPGLDEV 155 (459)
T ss_pred -CCHHHHHHHHHHHHHHH-HHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCEEEEE-EEEEECCCCCCCCCCCCCCCCC
T ss_conf -68999999999999875-23389885225872999968997156753569859976-2899888986545777887878
Q ss_pred CCCCCCHHHH-HHHHHCCCEECCCCCHHHHHHHHHH-----HHC------CCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 5854310123-3210012100128881789987653-----212------467731789999997534111389973886
Q gi|254781039|r 115 SGMLLSSYSE-KVLPSHSISVLSGPGFARDIAQGLP-----VGV------ILSSKNIDISRRLSKILTTDSFRVYCSDDR 182 (329)
Q Consensus 115 t~~~~se~i~-~~~~~~~~~vlsGPs~A~Eia~~~p-----t~~------~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~ 182 (329)
......+++. +.+| .+++++.|-..+-|+|.-.- ..+ .+...|.+.++.+.+.|..+.+.++.+..+
T Consensus 156 ~~~ts~~~~~l~~~P-~~v~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gi~i~~~~~v 234 (459)
T PRK06370 156 GYLTNETVFSLDELP-EHLAVIGGGYIGLEFAQAFRRFGSEVTVVERGPRLLPREDEDVAEAVREILEREGIDVRLDAKC 234 (459)
T ss_pred CEECCHHHHCCCCCC-CEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 787446873715489-5499989847799999999963988999996573455547567899999998529862027578
Q ss_pred CEE
Q ss_conf 144
Q gi|254781039|r 183 IGV 185 (329)
Q Consensus 183 ~Gv 185 (329)
..+
T Consensus 235 ~~i 237 (459)
T PRK06370 235 LRV 237 (459)
T ss_pred EEE
T ss_conf 999
No 309
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.83 E-value=0.28 Score=28.01 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=35.1
Q ss_pred CCCCC-EEE-EE-CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 98887-799-97-7887899999999977998189994498999999977
Q gi|254781039|r 1 MKNYS-TIF-VI-GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 1 M~~~~-kI~-Vi-GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|+.++ |++ |- |++-+|.++|..|++.| .+|.+++|+++.++...++
T Consensus 1 M~rl~gK~~lITGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~~ 49 (249)
T PRK06500 1 MSRLQGKTALITGGTSGIGLETARQFAAEG-ARVAITGRDAATLEAARAE 49 (249)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 989899889993768789999999999879-9999996998999999998
No 310
>PRK08774 consensus
Probab=93.74 E-value=0.12 Score=30.38 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=31.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9888779997788789999999997799818999449
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
|+...-|.|+|+|--|.++|..|++.|. +|.++.+.
T Consensus 1 M~~~~DVlIVGgGpvGl~lA~~La~~G~-~v~liE~~ 36 (402)
T PRK08774 1 MTHPHDVLIVGGGLVGSSLAIALDRIGL-DVGLVEAT 36 (402)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCCCC-CEEEEECC
T ss_conf 9899878999916999999999966899-78999379
No 311
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.69 E-value=0.29 Score=27.94 Aligned_cols=40 Identities=28% Similarity=0.467 Sum_probs=31.3
Q ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 79997--788789999999997799818999449899999997
Q gi|254781039|r 6 TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 6 kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|+++| |++-+|.++|..|++.| .+|.+++|+++..+...+
T Consensus 9 K~alITG~s~GIG~a~a~~la~~G-a~Vvi~~r~~~~l~~~~~ 50 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAG-ASVAICGRDEERLASAEA 50 (265)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989995757799999999999879-999999798899999999
No 312
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.68 E-value=0.11 Score=30.58 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=30.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 77999778878999999999779981899944989
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
.||.|+|+|-=|.++|..|++++..+|++|.|.++
T Consensus 1 mkV~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 98999994489999999998539998899942898
No 313
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.64 E-value=0.16 Score=29.58 Aligned_cols=33 Identities=39% Similarity=0.591 Sum_probs=30.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8779997788789999999997799818999449
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
+..|.|+|+|--|.++|..|++.| ++|.++.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G-~~V~liE~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG-LDVTLLERA 34 (387)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 854999997899999999998289-968999077
No 314
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.60 E-value=0.21 Score=28.77 Aligned_cols=124 Identities=15% Similarity=0.213 Sum_probs=70.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
++|.|+|+|.-+.-=+..|.+.| .+|+++..+ ..+++.+- +.+.+. .-.-..+.++++++|+.|+.-
T Consensus 14 k~vLVvGGG~VA~rK~~~Ll~~g-a~VtVvsp~--~~~el~~l-------~~i~~~---~r~~~~~dl~~~~lViaATdd 80 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVVSPE--ICEEMKEL-------PYITWK---QKTFSNDDIKDAHLIYAATNQ 80 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEECCC--CCHHHHHC-------CCEEEE---CCCCCHHHHCCCEEEEECCCC
T ss_conf 87999889899999999998787-969999998--68999845-------570887---046784683784399986899
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECC---CCCHHHHHHHHH
Q ss_conf 7766655553320356850552375200025854310123321001210012---888178998765
Q gi|254781039|r 85 KGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLS---GPGFARDIAQGL 148 (329)
Q Consensus 85 ~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vls---GPs~A~Eia~~~ 148 (329)
..+...+.+... +.. +++++---+..+..+++ ++++ ....+++=+ .|.+|+.+-+..
T Consensus 81 ~~lN~~i~~~a~---~~~-lvN~~d~~~~~dF~~Pa-iv~r--g~l~IaIST~G~SP~lak~lR~~i 140 (157)
T PRK06719 81 HAVNMMVKQAAH---DFQ-WVNVVSDGTESSFHTPG-VIRN--DEYVVTISTSGKDPSFTKRLKQEL 140 (157)
T ss_pred HHHHHHHHHHHH---HCC-CEEEECCCCCCCEEEEE-EEEE--CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999997---789-58982898889768703-8985--897999988998929999999999
No 315
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=93.55 E-value=0.068 Score=32.02 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=65.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC---CCCCCCC--------CCCCCCEEEE--------
Q ss_conf 79997788789999999997799818999449899999997789---8422798--------8178743897--------
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRI---NAKALPG--------IKLSPLLNFS-------- 66 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~---n~~~lp~--------i~l~~~i~~t-------- 66 (329)
||.|+|+|..|+-+++.|+..|..++.+.+.|.-....+|++-. +...-|. -+++++++++
T Consensus 1 KVlvvGaGglGce~~k~La~~Gvg~i~iiD~D~Ie~SNLnRQfLf~~~dvGk~Ka~vAa~~l~~~Np~~~I~~~~~~v~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 98999488879999999998399869997599005677013024464426882299999999987899779998055686
Q ss_pred -E--CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEE-ECCCCCC
Q ss_conf -3--16877555544112217776665555332035685055-2375200
Q gi|254781039|r 67 -S--DHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEII-ICSKGFE 112 (329)
Q Consensus 67 -~--~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii-~~sKGi~ 112 (329)
+ +.+.+++.|+|+-|+=...-|..+.+..-.. ++++| ..+-|+.
T Consensus 81 e~~~~~~f~~~~DvVi~alDN~~aR~~vN~~c~~~--~~PLIegGt~G~~ 128 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFL--IVPLIESGTEGFK 128 (234)
T ss_pred CCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHH--CCCEEEECCCCCE
T ss_conf 21057988852999998857888999999999980--9985972024614
No 316
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.55 E-value=0.28 Score=28.01 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=31.8
Q ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 79997--788789999999997799818999449899999997
Q gi|254781039|r 6 TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 6 kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|+++| |++-.|.++|..|++.| .+|.+.+|+++..+...+
T Consensus 9 K~alITG~s~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~ 50 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAG-ADVIILSRNEENLKRAKE 50 (263)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989991626099999999999869-999999798899999999
No 317
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.53 E-value=0.36 Score=27.31 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=55.8
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCCCCCC-CCCCCCCEEEEECHHHHHHHHHHH
Q ss_conf 877999778-8789999999997799--818999449899999997789842279-881787438973168775555441
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGL--ANVTLLGRKEILMQQLEDTRINAKALP-GIKLSPLLNFSSDHTLLQNADIVL 79 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~--~~V~l~~r~~~~~~~i~~~~~n~~~lp-~i~l~~~i~~t~~~~~l~~adiIi 79 (329)
|.||+|+|+ |.-|+.|...|.+... ..+.++......-+. .+.+-. .+..++. ..+....++.|++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~------~~~f~~~~~~v~~~---~~~~~~~~~~Divf 71 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKK------YIEFGGKSIGVPED---AADEFVFSDVDIVF 71 (334)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC------CCCCCCCCCCCCCC---CCCCCCCCCCCEEE
T ss_conf 9189999423558999999987539984057888523115771------60106750357621---13410012499999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 12217776665555332035685055237520
Q gi|254781039|r 80 FATSSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 80 iavps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
+|.+...-+++..++.+ .+..+|+.+.-+
T Consensus 72 ~~ag~~~s~~~~p~~~~---~G~~VIdnsSa~ 100 (334)
T COG0136 72 FAAGGSVSKEVEPKAAE---AGCVVIDNSSAF 100 (334)
T ss_pred EECCHHHHHHHHHHHHH---CCCEEEECCCCC
T ss_conf 91766878999999997---698899687311
No 318
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB; InterPro: IPR012799 Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), dodecenoyl-CoA delta-isomerase activity (5.3.3.8 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is Escherichia coli FadB (P21177 from SWISSPROT). This entry excludes the FadJ family represented by P77399 from SWISSPROT.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004165 dodecenoyl-CoA delta-isomerase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0009062 fatty acid catabolic process, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=93.51 E-value=0.045 Score=33.21 Aligned_cols=277 Identities=17% Similarity=0.226 Sum_probs=152.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH------------HHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHH
Q ss_conf 7999778878999999999779981899944989------------9999997789842279881787438973168775
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI------------LMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQ 73 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~------------~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~ 73 (329)
+=+|+|||-||--+|..=+.+|. .|.+-+.++. ...++.+.+..+..+-+ +-.+|+-+-+...++
T Consensus 317 ~AAVLGAGIMGGGIAYQSA~KG~-P~~MKDI~~~~l~lGl~EAaKLL~~~~~rG~~~~~K~A~--vl~~I~P~L~Ya~~~ 393 (716)
T TIGR02437 317 RAAVLGAGIMGGGIAYQSASKGV-PVVMKDIAQKSLDLGLTEAAKLLNKQVERGKIDPLKMAG--VLNSITPTLEYAGFD 393 (716)
T ss_pred CCEEECCCHHCCHHHHHHHCCCC-CEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH--HHCCCCCCEECCCCC
T ss_conf 10011265100037776323797-657610003557523889999999887415878778999--960587521016866
Q ss_pred HHHHHHCCC--CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEC--CCCCHHH---HHHH
Q ss_conf 555441122--17776665555332035685055237520002585431012332100121001--2888178---9987
Q gi|254781039|r 74 NADIVLFAT--SSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVL--SGPGFAR---DIAQ 146 (329)
Q Consensus 74 ~adiIiiav--ps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vl--sGPs~A~---Eia~ 146 (329)
++|+|+-|| .+..=..+|.++..+..+++.+-|-|--|. +|.+.+..-..++++-+ -.|-|-. ||.+
T Consensus 394 ~~D~vVEAVVE~PKVK~~VLaEvE~~V~ed~~laSNTSTI~------IslLAk~lkrPE~F~GMHFFNPVH~MPLVEvIR 467 (716)
T TIGR02437 394 NVDIVVEAVVENPKVKAAVLAEVEQKVREDAVLASNTSTIS------ISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 467 (716)
T ss_pred CEEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCCCC------HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 02379987536870347999877632200302111554012------889998742710011563237556687257860
Q ss_pred HHHHHCCCCCCHHHHHHHHHH--HHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHH
Q ss_conf 653212467731789999997--5341113899738861444400025677889975211003805789999998--999
Q gi|254781039|r 147 GLPVGVILSSKNIDISRRLSK--ILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQG--LSE 222 (329)
Q Consensus 147 ~~pt~~~ia~~d~~~~~~i~~--~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g--~~E 222 (329)
|.. |.|...++.++- -+--..+ .. +|==|-=+-=.| +---+|+ +.|+..| |..
T Consensus 468 GE~------sSd~tia~vVAyA~KMGK~PI--VV-NDCPGFfVNRVL---FPYF~GF-----------~~Ll~~G~DF~~ 524 (716)
T TIGR02437 468 GEK------SSDETIAKVVAYASKMGKTPI--VV-NDCPGFFVNRVL---FPYFAGF-----------SKLLRDGADFAK 524 (716)
T ss_pred CCC------CHHHHHHHHHHHHHHCCCCCE--EE-ECCCCCEECCHH---CCCHHHH-----------HHHHHCCCCHHH
T ss_conf 777------547899999999873489966--87-178873250001---3324348-----------999865764567
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCC------------------------HHHHHHHHHCCC-CCC-HHCC-
Q ss_conf 9999987225445532002321015776447753------------------------006787750890-702-5729-
Q gi|254781039|r 223 IMKLTEAMNGRADTILRLSGVGDLILTATSEQSR------------------------NFCFGIALGRGE-KQN-PDQI- 275 (329)
Q Consensus 223 m~~l~~~~g~~~~t~~glaG~GDl~~T~~s~~SR------------------------N~~~G~~lg~g~-~~~-~~~~- 275 (329)
+-...+...|=| +|+|.|=|.+--=|++|.| +.+||++=|+|- ... +.++
T Consensus 525 IDKVMEk~FGWP---MGPAYLlDVVGiDT~HHa~aVMA~GFP~RM~~~~rdAIDalfea~r~GQKNG~GFy~Y~~D~kGK 601 (716)
T TIGR02437 525 IDKVMEKQFGWP---MGPAYLLDVVGIDTAHHAQAVMAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEVDKKGK 601 (716)
T ss_pred HHHHHHHCCCCC---CCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCC
T ss_conf 757875137799---86045443102564213688862579445301411278897852004662777313432256788
Q ss_pred -CEECHHHHHHHHHHHH-HHCCC---------CCCHHHHHHHHHHCCC--CHHHH
Q ss_conf -6003199999999999-98289---------8715999999980789--98999
Q gi|254781039|r 276 -QLVEGAIAVSCVINIS-KKMGL---------KLPIFQAISDVMMNHI--SVDEA 317 (329)
Q Consensus 276 -~~vEG~~~~~~i~~l~-~~~~~---------~~Pi~~~v~~il~~~~--~~~~~ 317 (329)
...+-....+.+.... ++... =.|++..+-+=|.+++ +|.|+
T Consensus 602 ~KK~~d~~~~~~L~~~~~~~~~~~~~~II~r~MIP~~~E~VrCLeeGIv~~~~EA 656 (716)
T TIGR02437 602 PKKEVDSEVLELLKPVVAEQRDFDDEEIIARMMIPMINEVVRCLEEGIVASAAEA 656 (716)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 6521245789999999877523787789988642689999987430222560132
No 319
>PRK06182 short chain dehydrogenase; Validated
Probab=93.50 E-value=0.32 Score=27.61 Aligned_cols=46 Identities=26% Similarity=0.318 Sum_probs=35.4
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC
Q ss_conf 988877999778-878999999999779981899944989999999778
Q gi|254781039|r 1 MKNYSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR 48 (329)
Q Consensus 1 M~~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~ 48 (329)
|++ +.+.|-|+ +-.|.++|..|+++| ++|.+.+|+.+..+.+...+
T Consensus 1 mk~-Kv~lITGassGIG~a~a~~la~~G-~~V~~~~r~~~~l~~l~~~~ 47 (273)
T PRK06182 1 MKK-KVALVTGASSGIGKATARKLIAEG-FTVYGAARRVDKMEDLASLG 47 (273)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCC
T ss_conf 946-989990632099999999999879-98999979899999999679
No 320
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=93.46 E-value=0.28 Score=27.99 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=33.7
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 779997788-789999999997799818999449899999997
Q gi|254781039|r 5 STIFVIGAG-AFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~ViGaG-a~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
+||.|-|++ -+|.++|..|++.| .+|.+.+|+++..+...+
T Consensus 1 mnVlITGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~ 42 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG-ARVVISSRNEENLEKALK 42 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989997587789999999999879-999999799899999999
No 321
>pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.
Probab=93.45 E-value=0.17 Score=29.46 Aligned_cols=87 Identities=24% Similarity=0.279 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHCCCC-E---EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECH-HHHH--HHHHHHCCCC
Q ss_conf 7887899999999977998-1---899944989999999778984227988178743897316-8775--5554411221
Q gi|254781039|r 11 GAGAFGTALSSVIASRGLA-N---VTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDH-TLLQ--NADIVLFATS 83 (329)
Q Consensus 11 GaGa~GtAlA~~La~~g~~-~---V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~-~~l~--~adiIiiavp 83 (329)
|.|+.|+.++..|.++... + +.++.|+....+ + .. . .+....+++. +.+. +.|+|+-+.|
T Consensus 1 G~G~VG~~v~~~l~~~~~~~~~~l~~v~~r~~~~~~-----~--~~-----~-~~~~~~~~d~~~ll~~~~iDvVVE~~g 67 (116)
T pfam03447 1 GCGAIGSGLLELLLRQQEEIPLELVAVADRDLLSKA-----R--AA-----L-LGDEPVTLDLDDLVADPRPDVVVECAS 67 (116)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCC-----C--CC-----C-CCCCEEECCHHHHHCCCCCCEEEECCC
T ss_conf 987028999999994920356799999847834323-----2--12-----4-666715779999961889989998899
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 777666555533203568505523752000
Q gi|254781039|r 84 SKGYGEALNFYSNWLKESAEIIICSKGFEY 113 (329)
Q Consensus 84 s~~~~~~l~~i~~~l~~~~~ii~~sKGi~~ 113 (329)
+....+ -+.+.|+.++.+|+..|++-.
T Consensus 68 ~~~~~~---~~~~aL~~GkhVVTaNK~~lA 94 (116)
T pfam03447 68 SEAVAE---YVLKALKAGKHVVTASKGALA 94 (116)
T ss_pred CHHHHH---HHHHHHHCCCEEEEECHHHHC
T ss_conf 489999---999999879989990788967
No 322
>PRK12743 acetoin dehydrogenase; Provisional
Probab=93.43 E-value=0.25 Score=28.38 Aligned_cols=41 Identities=12% Similarity=0.300 Sum_probs=29.8
Q ss_pred CCEEEEE--CCCHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHH
Q ss_conf 8779997--78878999999999779981899-944989999999
Q gi|254781039|r 4 YSTIFVI--GAGAFGTALSSVIASRGLANVTL-LGRKEILMQQLE 45 (329)
Q Consensus 4 ~~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l-~~r~~~~~~~i~ 45 (329)
|+||++| |++-.|.++|..|++.|. +|.+ |.++++..+...
T Consensus 1 M~KValITGgs~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~ 44 (253)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETA 44 (253)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEECCCCHHHHHHHH
T ss_conf 999899907588999999999998799-89997489979999999
No 323
>PRK05717 oxidoreductase; Validated
Probab=93.40 E-value=0.28 Score=27.99 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=34.2
Q ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 79997--7887899999999977998189994498999999977
Q gi|254781039|r 6 TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 6 kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|+++| |++..|.++|..|++.| .+|.+.+|+++..+.+.+.
T Consensus 11 KvalITG~s~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~~ 53 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEG-WQVVLADLDRERGAKVAKA 53 (255)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 889995878889999999999879-9899996988999999998
No 324
>PRK06475 salicylate hydroxylase; Provisional
Probab=93.39 E-value=0.11 Score=30.55 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=29.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 7799977887899999999977998189994498
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
..|.|+|+|--|.++|..|++.| ++|+++.+.+
T Consensus 3 ~~VlIVGaGiaGL~~A~~L~~~G-~~v~V~E~~~ 35 (400)
T PRK06475 3 GSILIAGAGVAGLSAALELAARG-WAVTIIEKAQ 35 (400)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCEEEECCCC
T ss_conf 97999895889999999999789-9999991799
No 325
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB; InterPro: IPR012730 This entry describes the molybdopterin biosynthesis protein MoeB in Escherichia coli and related species. MoeB and MoaD are involved in molybdenum cofactor biosynthesis, an evolutionarily conserved pathway. The MoeB enzyme covalently modifies the molybdopterin synthase MoaD by sulphurylation. The crystal structure of the complex between the E. coli MoeB and MoaD proteins reveals a MoeB(2)-MoaD(2) heterotetramer in which the MoeB subunits form a mainly hydrophobic dimer . MoeB is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (IPR000594 from INTERPRO). ; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=93.37 E-value=0.19 Score=29.11 Aligned_cols=188 Identities=16% Similarity=0.292 Sum_probs=96.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHH--HHHC
Q ss_conf 88779997788789999999997799818999449899999997789842279881787438973168775555--4411
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNAD--IVLF 80 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~ad--iIii 80 (329)
+.+++.|+|+|-.|.|=+.+|+..|.-+.+|.+.|.-....+++.=.|. +..+.. -++.+-.+.+..-. +-|-
T Consensus 23 K~s~vLivG~GGLGCAa~QYLa~AGvG~l~L~DfD~V~lSNLQRQvLH~----da~~g~-pKV~SA~~~L~~~NPhi~i~ 97 (240)
T TIGR02355 23 KASKVLIVGLGGLGCAASQYLAAAGVGRLTLVDFDTVSLSNLQRQVLHS----DANIGQ-PKVESAKDALEEINPHIKIN 97 (240)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCEEHHHHHHHHHHCC----CCCCCC-HHHHHHHHHHHHCCCEEEEE
T ss_conf 0056777836703456788886436632788633710011213344103----255786-12689999998639916780
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHH----HCCCEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 221777666555533203568505523752000258543101233210----0121001288817899876532124677
Q gi|254781039|r 81 ATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLP----SHSISVLSGPGFARDIAQGLPVGVILSS 156 (329)
Q Consensus 81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~----~~~~~vlsGPs~A~Eia~~~pt~~~ia~ 156 (329)
++...-=+ +++...+.+...++.||--++ +++.+. ..+.=.+||..+= ++|.-|-.+.-.
T Consensus 98 ~in~~ld~---~~l~~li~~~~~V~DctDNV~----------vRnQLn~~Cf~~K~PLvSgaAIR---mEG~v~VFtY~~ 161 (240)
T TIGR02355 98 TINAKLDD---EELAALIAKHDVVVDCTDNVE----------VRNQLNRQCFAAKVPLVSGAAIR---MEGQVSVFTYQD 161 (240)
T ss_pred HHHHHCCH---HHHHHHHHHCCEEEECCCCHH----------HHHHHHHHHHHCCCCCEEHHHHH---CCCEEEEEEECC
T ss_conf 57642268---899988620417885377657----------88887577762389800012210---045178985259
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHH-----HHHHHH
Q ss_conf 3178999999753411138997388614444000256778899752110----------0380578999-----999899
Q gi|254781039|r 157 KNIDISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGR----------GCGDSARAIV-----MVQGLS 221 (329)
Q Consensus 157 ~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl----------~~g~N~~aal-----~~~g~~ 221 (329)
+....+-++++|....+-+.- - -|+|-..|++-.+ ++|.+..+-+ ++..++
T Consensus 162 -~~PcY~clS~LFg~~~LsCVE--------a-----Gv~AP~vG~vG~lQA~EaIK~~~~~G~~~~G~~l~~Da~~~~~R 227 (240)
T TIGR02355 162 -DEPCYRCLSKLFGENALSCVE--------A-----GVLAPVVGVVGSLQALEAIKVLLGIGKPLAGKILMIDALSMSFR 227 (240)
T ss_pred -CCCHHHHHHHHHCCCCCEEEH--------H-----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH
T ss_conf -787188999984068512212--------1-----03523788887799999999998628876670799814400012
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781039|r 222 EIMK 225 (329)
Q Consensus 222 Em~~ 225 (329)
||..
T Consensus 228 E~~L 231 (240)
T TIGR02355 228 EMKL 231 (240)
T ss_pred HHHC
T ss_conf 1111
No 326
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.37 E-value=0.63 Score=25.73 Aligned_cols=126 Identities=21% Similarity=0.258 Sum_probs=69.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 8779997788789999999997799818999449--89999999778984227988178743897316877555544112
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK--EILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFA 81 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~--~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiia 81 (329)
-+++.|+|+|..+..=+..|.+.| .+|+++..+ ++..+ +.+.+ .+++. .-.-....+.++++||.|
T Consensus 10 gk~vLVVGGG~vA~rK~~~Ll~~g-A~VtVvsp~~~~el~~-l~~~~-------~i~~~---~~~~~~~dl~~~~lViaA 77 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG-AHITVISPEITENLVK-LVEEG-------KIRWK---EKEFEPSDIVDAFLVIAA 77 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCHHHHH-HHHCC-------CCEEE---ECCCCHHHHCCCCEEEEC
T ss_conf 986999889899999999998689-9699986999989999-99769-------94476---167886675167044552
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECC---CCCHHHHHHHHH
Q ss_conf 2177766655553320356850552375200025854310123321001210012---888178998765
Q gi|254781039|r 82 TSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLS---GPGFARDIAQGL 148 (329)
Q Consensus 82 vps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vls---GPs~A~Eia~~~ 148 (329)
+.-..+...+.+.. .++. +++++---+..+..+++- +++ ....+++=| .|.+|..+-+..
T Consensus 78 T~d~~~N~~i~~~~---~~~~-lvNvvD~p~~~dFi~Pai-v~r--g~l~IaIST~G~SP~lAr~iR~~l 140 (202)
T PRK06718 78 TNDPRVNEAVAEAL---PENA-LFNVIGDAESGNVVFPSA-LHR--GKLTISVSTDGASPKLAKKIRDEL 140 (202)
T ss_pred CCCHHHHHHHHHHH---HHCC-CEEECCCCCCCEEEEEEE-EEE--CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 79899999999986---5448-757557865482787427-852--998999988997839999999999
No 327
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=93.34 E-value=0.37 Score=27.25 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=36.0
Q ss_pred CCCC--CEEEEE-CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 9888--779997-7887899999999977998189994498999999977
Q gi|254781039|r 1 MKNY--STIFVI-GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 1 M~~~--~kI~Vi-GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|..+ +.+.|- |++-.|.++|..|++.| .+|.+.+|+++..+.+.+.
T Consensus 1 M~~L~gK~alVTGas~GIG~aia~~l~~~G-a~V~~~~r~~~~l~~~~~~ 49 (263)
T PRK06200 1 MGWLTGQVALITGGGSGIGRALVERFLAEG-ARVAVLERSAEKCASLRQR 49 (263)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 987172889995866799999999999879-9999997999999999998
No 328
>PRK06126 hypothetical protein; Provisional
Probab=93.34 E-value=0.16 Score=29.56 Aligned_cols=37 Identities=32% Similarity=0.647 Sum_probs=31.8
Q ss_pred CCCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 988877--99977887899999999977998189994498
Q gi|254781039|r 1 MKNYST--IFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 1 M~~~~k--I~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|+|.+. |.|+|+|--|.++|..|++.|. +|.++.|.+
T Consensus 2 m~~~~~~DVlIVGaGPvGL~lA~~La~~Gi-~v~viEr~~ 40 (545)
T PRK06126 2 MENTSETPVLIVGGGPVGLALALELGRRGV-DSILVERGD 40 (545)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCC
T ss_conf 999888998999949899999999998799-999988999
No 329
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.34 E-value=0.2 Score=28.93 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=25.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 779997788789999999997799818999449
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
+||.|+|.|.=|.|.+..|.+.|...+..+..+
T Consensus 9 kkv~V~GlG~sG~aaa~~L~~~g~~~~v~~~~~ 41 (468)
T PRK04690 9 KRVALWGWGREGRAAYRALRAQLPAQPLTVFCN 41 (468)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 979998347879999999996699049997288
No 330
>KOG2741 consensus
Probab=93.33 E-value=0.39 Score=27.07 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=62.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CCE-EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEE-EECHHHHHHH--H
Q ss_conf 8877999778878999999999779--981-89994498999999977898422798817874389-7316877555--5
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRG--LAN-VTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF-SSDHTLLQNA--D 76 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g--~~~-V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~-t~~~~~l~~a--d 76 (329)
+.-+++|+|+|.++.-++..|..-- .|+ |-+.+|+.+.+....+.+. +| +.++ .+.++.+++. |
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~---------~~-~~k~y~syEeLakd~~vD 74 (351)
T KOG2741 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHN---------IP-NPKAYGSYEELAKDPEVD 74 (351)
T ss_pred CEEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCC---------CC-CCCCCCCHHHHHCCCCCC
T ss_conf 60589886046778999997214754582799996552788999998659---------99-874255799882498768
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 44112217776665555332035685055237520
Q gi|254781039|r 77 IVLFATSSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 77 iIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
+|.+++|....-+++-....+-|. |.|-|-+
T Consensus 75 vVyi~~~~~qH~evv~l~l~~~K~----VL~EKPl 105 (351)
T KOG2741 75 VVYISTPNPQHYEVVMLALNKGKH----VLCEKPL 105 (351)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC----EEECCCC
T ss_conf 799679980089999999975995----7865655
No 331
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.31 E-value=0.5 Score=26.39 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=36.3
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC
Q ss_conf 988877999778-878999999999779981899944989999999778
Q gi|254781039|r 1 MKNYSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR 48 (329)
Q Consensus 1 M~~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~ 48 (329)
|+-.+.|.|-|+ .-+|.++|..|+++| ++|...+|+++.++.+...+
T Consensus 1 M~m~K~vlITGassGIG~alA~~la~~G-~~V~~~~R~~~~l~~l~~~~ 48 (277)
T PRK05993 1 MDMKRSILITGCSSGIGAYCAHALQKRG-WRVFATCRKPEDIAALEAEG 48 (277)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCC
T ss_conf 9998689992568699999999999879-99999979999999998489
No 332
>KOG1298 consensus
Probab=93.28 E-value=0.12 Score=30.46 Aligned_cols=32 Identities=31% Similarity=0.646 Sum_probs=29.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 779997788789999999997799818999449
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
.-|-|+|||.-|+|+|..|++.| .+|.+..||
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdG-RrVhVIERD 77 (509)
T KOG1298 46 ADVIIVGAGVAGSALAYALAKDG-RRVHVIERD 77 (509)
T ss_pred CCEEEECCCCHHHHHHHHHHHCC-CEEEEEECC
T ss_conf 44799888622789999985078-579999634
No 333
>PRK06185 hypothetical protein; Provisional
Probab=93.25 E-value=0.14 Score=29.95 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=31.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 98887799977887899999999977998189994498
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|..-..|.|+|+|--|.++|..|++.| .+|.++.+.+
T Consensus 3 ~~~~tDV~IVGaGpaGL~lAl~Lar~G-i~V~VlEk~~ 39 (409)
T PRK06185 3 MVETTDCCIVGGGPAGMMLGLLLARAG-VDVTVLEKHA 39 (409)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEECCCC
T ss_conf 887899899991889999999999779-9999991899
No 334
>KOG1502 consensus
Probab=93.22 E-value=0.072 Score=31.85 Aligned_cols=78 Identities=22% Similarity=0.161 Sum_probs=47.7
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHH---HHHHHCCCCCCCCCCCCCCCCEEE-EECHHHHHHHHHH
Q ss_conf 877999778-87899999999977998189994498999---999977898422798817874389-7316877555544
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILM---QQLEDTRINAKALPGIKLSPLLNF-SSDHTLLQNADIV 78 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~---~~i~~~~~n~~~lp~i~l~~~i~~-t~~~~~l~~adiI 78 (329)
+++++|-|| |-.|+.+...|.++| +.|+--.|+++.- +.+.+-..+...+. .+-..+.- .+..+++++||.|
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l~--l~~aDL~d~~sf~~ai~gcdgV 82 (327)
T KOG1502 6 GKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPEDEKKTEHLRKLEGAKERLK--LFKADLLDEGSFDKAIDGCDGV 82 (327)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHHCCCCCCCCE--EEECCCCCCCHHHHHHHCCCEE
T ss_conf 7279994882089999999998689-989999708630565899986515754425--8852435513599997078789
Q ss_pred HCCCCH
Q ss_conf 112217
Q gi|254781039|r 79 LFATSS 84 (329)
Q Consensus 79 iiavps 84 (329)
|=+-.+
T Consensus 83 fH~Asp 88 (327)
T KOG1502 83 FHTASP 88 (327)
T ss_pred EEECCC
T ss_conf 991766
No 335
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.20 E-value=0.19 Score=29.09 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=32.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHC
Q ss_conf 779997788789999999997799818999449--8999999977
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRK--EILMQQLEDT 47 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~--~~~~~~i~~~ 47 (329)
....|+|.|.=|.++|..|.++| ++|.+|+.+ +...+.+...
T Consensus 8 ~~~LV~G~G~sG~s~a~~L~~~G-~~V~~~D~~~~~~~~~~~~~~ 51 (448)
T PRK03803 8 GLRIVVGLGKSGMSLVRFLARQG-YQFAVTDTRENPPELATLRRD 51 (448)
T ss_pred CCEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHHHHHH
T ss_conf 95899998999999999999788-959999189991679999974
No 336
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=93.16 E-value=0.08 Score=31.56 Aligned_cols=118 Identities=18% Similarity=0.239 Sum_probs=69.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC--------------------CCCCCCCCCCCCCCE
Q ss_conf 877999778878999999999779981899944989999999778--------------------984227988178743
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR--------------------INAKALPGIKLSPLL 63 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~--------------------~n~~~lp~i~l~~~i 63 (329)
..+|+|-|-|-.||.+|.-||+.|.....|.+.|.-....+|+.. +|| +-+++.-+ .
T Consensus 21 ~a~VAicGlGGLGS~~AinLAR~GigkLiLvDfDvvepsNLnRQqY~~s~~G~~KteAlke~i~einP--y~~ie~~d-~ 97 (200)
T TIGR02354 21 KASVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKVSDVGKKKTEALKENISEINP--YVEIEIID-E 97 (200)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC--CCEEEEEE-C
T ss_conf 58278970161168999999873022025664043236656132578762486217999987865088--42123110-2
Q ss_pred EEEE-C-HHHHHHHHHHHCCCCHHHHHHHHH-HHHHHCCCCCCEEECCCCC--CCCCCCCCCHHHHHH
Q ss_conf 8973-1-687755554411221777666555-5332035685055237520--002585431012332
Q gi|254781039|r 64 NFSS-D-HTLLQNADIVLFATSSKGYGEALN-FYSNWLKESAEIIICSKGF--EYNSGMLLSSYSEKV 126 (329)
Q Consensus 64 ~~t~-~-~~~l~~adiIiiavps~~~~~~l~-~i~~~l~~~~~ii~~sKGi--~~~t~~~~se~i~~~ 126 (329)
+++. + ...++++|+|+-|-=+......+. .+....+ ++ .+.|+-|+ ..++...-+--|.+.
T Consensus 98 ki~E~N~~~~fkdaDiv~EAFDna~aKam~~n~vl~~yk-dk-~li~ASGlAGy~D~NsI~trKI~k~ 163 (200)
T TIGR02354 98 KIDEENLDKLFKDADIVCEAFDNAEAKAMLVNAVLEKYK-DK-KLIAASGLAGYDDANSIKTRKISKR 163 (200)
T ss_pred CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCC-CC-EEEEECCCCCCCCCCCCCCCEECCC
T ss_conf 127667987840674788716998899999999997678-64-5876026645242110001211463
No 337
>cd04510 consensus
Probab=93.14 E-value=0.7 Score=25.41 Aligned_cols=102 Identities=12% Similarity=0.181 Sum_probs=55.4
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----CEEEEEECCHH-HHHHHHHCCCCCCCCCCC--CCCCCEEEEEC-HHHHHH
Q ss_conf 77999778-8789999999997799-----81899944989-999999778984227988--17874389731-687755
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGL-----ANVTLLGRKEI-LMQQLEDTRINAKALPGI--KLSPLLNFSSD-HTLLQN 74 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~-----~~V~l~~r~~~-~~~~i~~~~~n~~~lp~i--~l~~~i~~t~~-~~~l~~ 74 (329)
-+|+|-|| |..|.+|...++. |. .+|.|.--|-. ..+.+.--.. -|-+. +|-..+.+++| .+++++
T Consensus 2 ~~V~VTGAAGqI~Y~Ll~~Ia~-G~vfG~dq~V~L~Lldi~~~~~~L~Gv~M---ELeDcAfPlL~~v~~t~d~~~AF~d 77 (334)
T cd04510 2 LQVWITSASAPVCYHLIPHLAS-GDVFGMLTEISIHLLDTSESEEMLKGLVM---EVFDLAFPLLREVSVHTDVMLAFQQ 77 (334)
T ss_pred EEEEEECCCHHHHHHHHHHHHC-CCCCCCCCEEEEEECCCHHHHHHHHCEEE---EHHHCCCHHHCCEEEECCHHHHHCC
T ss_conf 0999957737999999999847-87669997599996686667887533055---1140465433865885787897366
Q ss_pred HHHHHCCC--CHH---------------HHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 55441122--177---------------7666555533203568505523752
Q gi|254781039|r 75 ADIVLFAT--SSK---------------GYGEALNFYSNWLKESAEIIICSKG 110 (329)
Q Consensus 75 adiIiiav--ps~---------------~~~~~l~~i~~~l~~~~~ii~~sKG 110 (329)
+|++|+.- |+. -|...-+.|..+-+++..++.+-++
T Consensus 78 ad~ailvg~~~~r~~~~~r~dll~~n~~IF~~qG~al~~~A~~~vKVlVvGN~ 130 (334)
T cd04510 78 AHVIIVLDDFQLKGEENDLEGDKRTVVEHFHRYGQLIEQNAQKDVRVLVAGRG 130 (334)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 88899970446787741568999975799999999998536688679997898
No 338
>PRK07538 hypothetical protein; Provisional
Probab=93.14 E-value=0.14 Score=29.89 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=29.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 7799977887899999999977998189994498
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
++|.|+|+|-=|.++|..|.+.| ++|++|.+.+
T Consensus 1 m~V~IvGaG~aGL~lA~~L~~~G-i~v~V~E~~~ 33 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG-IEVEVFEAAP 33 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEECCCC
T ss_conf 98999990589999999999789-9989993699
No 339
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.05 E-value=0.2 Score=28.98 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8779997788789999999997799818999449
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
-+||+|||+|.=|.+-|..|++.| |+|++|..-
T Consensus 306 ~~kVAVIGsGPAGLs~A~~Lar~G-y~VTVFEal 338 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEG-FPVTIFEAF 338 (944)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 986799885768999999999779-933999447
No 340
>KOG1399 consensus
Probab=93.04 E-value=0.14 Score=30.06 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=28.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 87799977887899999999977998189994498
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
.++++|||||+=|.+-|..|.+.| ++|.+.-|..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g-~~v~vfEr~~ 39 (448)
T KOG1399 6 SKDVAVIGAGPAGLAAARELLREG-HEVVVFERTD 39 (448)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CCCEEEEECC
T ss_conf 785489785668889999998779-9836997058
No 341
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=93.04 E-value=0.37 Score=27.21 Aligned_cols=40 Identities=30% Similarity=0.542 Sum_probs=30.7
Q ss_pred EEEEE-C-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 79997-7-88789999999997799818999449899999997
Q gi|254781039|r 6 TIFVI-G-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 6 kI~Vi-G-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|+++| | ++-.|.++|..|++.| .+|.+.+|+++..+...+
T Consensus 11 KvalVTGas~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~ 52 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAG-AKVAILDRNQEKAEAVVE 52 (278)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989995867489999999999879-989999798899999999
No 342
>PRK09072 short chain dehydrogenase; Provisional
Probab=93.01 E-value=0.44 Score=26.73 Aligned_cols=42 Identities=29% Similarity=0.573 Sum_probs=34.7
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 77999778-87899999999977998189994498999999977
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
+++.|-|+ +-.|.|+|..|++.| .+|.+++|+++..+.+.++
T Consensus 6 K~vlITGassGIG~a~A~~la~~G-~~vil~~R~~~~L~~~~~~ 48 (262)
T PRK09072 6 KRVLLTGASGGIGEALAEALCAAG-ARLLLVGRNAEKLEALAAR 48 (262)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 889994862399999999999879-9899998989999999998
No 343
>PRK10206 putative dehydrogenase; Provisional
Probab=92.96 E-value=0.39 Score=27.12 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=52.4
Q ss_pred CEEEEECCCHHHHHHHHH-HHH-CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHH--HHHHH
Q ss_conf 779997788789999999-997-7998189994498999999977898422798817874389731-687755--55441
Q gi|254781039|r 5 STIFVIGAGAFGTALSSV-IAS-RGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQN--ADIVL 79 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~-La~-~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~--adiIi 79 (329)
=|++|+|.|.+|..+-.+ +.. .+.-.|....++.+..+...... | .+++.++ .+.+.+ -|+|+
T Consensus 3 irvaiiG~G~~~~~fH~P~i~~~~~~~~v~~v~~~~~~~~~~a~~~------~------~~~~~~~~~~ll~~~~id~V~ 70 (345)
T PRK10206 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIY------S------HIHFTSDLDEVLNDPDVKLVV 70 (345)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHC------C------CCCEECCHHHHHCCCCCCEEE
T ss_conf 4799992649999998999963899579999978876188888776------9------981228999995499999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 12217776665555332035685055237520
Q gi|254781039|r 80 FATSSKGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 80 iavps~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
+|+|+....+....... .++. |.|-|-+
T Consensus 71 i~tP~~~H~~~a~~al~---aGkh-V~~EKP~ 98 (345)
T PRK10206 71 VCTHADSHFEYAKRALE---AGKN-VLVEKPF 98 (345)
T ss_pred ECCCCHHHHHHHHHHHH---CCCC-EEEECCC
T ss_conf 87995789999999997---8992-8980366
No 344
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.95 E-value=0.36 Score=27.29 Aligned_cols=45 Identities=16% Similarity=0.331 Sum_probs=35.2
Q ss_pred CCCCCEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHH
Q ss_conf 9888779997--78878999999999779981899944-9899999997
Q gi|254781039|r 1 MKNYSTIFVI--GAGAFGTALSSVIASRGLANVTLLGR-KEILMQQLED 46 (329)
Q Consensus 1 M~~~~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r-~~~~~~~i~~ 46 (329)
|++.+||++| |++-+|.++|..|++.| .+|.+.+| +++..+...+
T Consensus 1 M~~~~KValVTGgs~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~~ 48 (259)
T PRK12745 1 MKSTRPVALVTGGRRGIGLGIALALAAGG-FDLAINDRPDAEKLAATQQ 48 (259)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHH
T ss_conf 99999999996867899999999999879-9899997986678999999
No 345
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=92.95 E-value=0.14 Score=29.99 Aligned_cols=33 Identities=27% Similarity=0.575 Sum_probs=29.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 7999778878999999999779981899944989
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
-|.|+|+|-=|.++|..|+++| .+|.++.+.++
T Consensus 3 DV~IvGaG~aGl~lA~~L~~~G-i~v~V~Er~~~ 35 (349)
T pfam01494 3 DVLIVGGGPAGLMLALLLARAG-VRVVLVERHAT 35 (349)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEECCCCC
T ss_conf 7899992889999999998779-98999928999
No 346
>PRK05876 short chain dehydrogenase; Provisional
Probab=92.94 E-value=0.43 Score=26.78 Aligned_cols=43 Identities=33% Similarity=0.367 Sum_probs=33.2
Q ss_pred CCCC-CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 9888-779997--7887899999999977998189994498999999
Q gi|254781039|r 1 MKNY-STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQL 44 (329)
Q Consensus 1 M~~~-~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i 44 (329)
|+++ .|+++| |++-+|.++|..|++.| .+|.+.+++++..+..
T Consensus 1 M~~~~gKvavITGaasGIG~a~A~~la~~G-a~Vvi~d~~~~~l~~~ 46 (275)
T PRK05876 1 MDGFPGRGAVITGGASGIGLATGTEFARRG-ARVVLGDVDKPGLRQA 46 (275)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH
T ss_conf 959899879992826699999999999879-9899997988999999
No 347
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=92.92 E-value=0.49 Score=26.46 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 99999999999828987159999999807899899999984889
Q gi|254781039|r 282 IAVSCVINISKKMGLKLPIFQAISDVMMNHISVDEALSILLNHS 325 (329)
Q Consensus 282 ~~~~~i~~l~~~~~~~~Pi~~~v~~il~~~~~~~~~i~~L~~~~ 325 (329)
...+.+.++.++..++ |+.+..|.+ .+..++.+.|.++.
T Consensus 285 ~~~~~~~~l~~~g~i~-~~i~~~~~l----~~~~~A~~~l~~~~ 323 (332)
T PRK13771 285 KDVEEALKLVAEGKIK-PVIAGHVSL----SDIDKALEMLKDKS 323 (332)
T ss_pred HHHHHHHHHHHCCCCE-EEEEEEEEH----HHHHHHHHHHHCCC
T ss_conf 9999999999869986-457279828----99999999997799
No 348
>PRK06116 glutathione reductase; Validated
Probab=92.91 E-value=0.76 Score=25.20 Aligned_cols=175 Identities=21% Similarity=0.245 Sum_probs=84.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH--------------------HHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 98887799977887899999999977998189994498--------------------9999999778984227988178
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE--------------------ILMQQLEDTRINAKALPGIKLS 60 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~--------------------~~~~~i~~~~~n~~~lp~i~l~ 60 (329)
|+...-+.|||+|.=|.+-|..+++.| .+|.++.++. +..+.+++.. +.| ++...
T Consensus 1 Ms~~YDvvVIG~GpaG~~aA~~aa~~G-~kV~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~--~~~--G~~~~ 75 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYG-AKVALIEAKELGGTCVNVGCVPKKLMWYGAQFAEAFHDYA--PGY--GFDVT 75 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH--HHC--CCCCC
T ss_conf 997488899998889999999999687-9699993799785254157164699999999999999778--755--81368
Q ss_pred CCEEEEECH-HHHHHHHHHHCCCCHHHHHHHHHHH--------H------------HHCCCCCCEEECCCC--CCC---C
Q ss_conf 743897316-8775555441122177766655553--------3------------203568505523752--000---2
Q gi|254781039|r 61 PLLNFSSDH-TLLQNADIVLFATSSKGYGEALNFY--------S------------NWLKESAEIIICSKG--FEY---N 114 (329)
Q Consensus 61 ~~i~~t~~~-~~l~~adiIiiavps~~~~~~l~~i--------~------------~~l~~~~~ii~~sKG--i~~---~ 114 (329)
. ..-|. +..+..+-++--+ ...+++.++.. . ..+.. ..+|.+|=. ..+ +
T Consensus 76 ~---~~~d~~~~~~~~~~~i~~l-~~~~~~~~~~~~V~~~~g~a~f~~~~tv~v~~~~i~a-~~ivIATGs~p~~p~ipG 150 (450)
T PRK06116 76 E---NKFDWKKLIANRDAYIDRL-HGSYRRGLENNGVDLIEGFARFVDAHTVEVNGETYTA-DHILIATGGRPSIPDIPG 150 (450)
T ss_pred C---CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEE-EEEEECCCCCCCCCCCCC
T ss_conf 7---7528999999999999999-9999999876896899706887268740359829854-179998789775899988
Q ss_pred -CC-CCCCHHHH-HHHHHCCCEECCCCCHHHHHHHHH-----HHHCC------CCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf -58-54310123-321001210012888178998765-----32124------677317899999975341113899738
Q gi|254781039|r 115 -SG-MLLSSYSE-KVLPSHSISVLSGPGFARDIAQGL-----PVGVI------LSSKNIDISRRLSKILTTDSFRVYCSD 180 (329)
Q Consensus 115 -t~-~~~se~i~-~~~~~~~~~vlsGPs~A~Eia~~~-----pt~~~------ia~~d~~~~~~i~~~~~~~~~~~~~s~ 180 (329)
+. ....+++. +.+| .+++++.|-..+-|+|.-. -..++ +...|.+.++.+.+.|....++++..+
T Consensus 151 ~e~~~tsd~~~~l~~lP-~~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~l~~~D~~~~~~l~~~l~~~gi~i~~~~ 229 (450)
T PRK06116 151 AEYGITSDGFFALEELP-KRVAVVGAGYIAVEFAGVLHGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIQLHTNA 229 (450)
T ss_pred CCEEEECHHHCCCCCCC-CEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 11266144522545479-77999999666999999999609848999944840120487777999999986497896398
Q ss_pred CCCEEE
Q ss_conf 861444
Q gi|254781039|r 181 DRIGVQ 186 (329)
Q Consensus 181 D~~GvE 186 (329)
.+..++
T Consensus 230 ~v~~v~ 235 (450)
T PRK06116 230 VPKAVE 235 (450)
T ss_pred EEEEEE
T ss_conf 899999
No 349
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=92.91 E-value=0.53 Score=26.21 Aligned_cols=46 Identities=26% Similarity=0.478 Sum_probs=35.9
Q ss_pred CCCCCEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 9888779997--7887899999999977998189994498999999977
Q gi|254781039|r 1 MKNYSTIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 1 M~~~~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|+=..|+++| |++-+|.++|..|++.| .+|.+++|+++.++++.+.
T Consensus 1 M~L~gKvalITGgs~GIG~aia~~~a~~G-a~V~i~~r~~~~l~~~~~~ 48 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGLGRAIVDRFVAEG-ARVAVLDKSAAGLQELEAA 48 (262)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 99899889990678789999999999879-9999998998999999986
No 350
>PRK08945 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.48 Score=26.52 Aligned_cols=41 Identities=37% Similarity=0.517 Sum_probs=31.8
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 77999778-8789999999997799818999449899999997
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
+.+.|-|+ +-.|.++|..|++.| .+|.+.+|+++..+.+.+
T Consensus 14 K~~lITGas~GIG~aiA~~la~~G-a~Vil~~r~~~~l~~~~~ 55 (245)
T PRK08945 14 RIILVTGAGDGIGREAALTYARHG-ATVILLGRTEEKLEAVYD 55 (245)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989994886189999999999879-989999698899999999
No 351
>PRK06483 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.77 Score=25.18 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=32.7
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHHHC
Q ss_conf 988877999778-87899999999977998189994498-999999977
Q gi|254781039|r 1 MKNYSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKE-ILMQQLEDT 47 (329)
Q Consensus 1 M~~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~-~~~~~i~~~ 47 (329)
|+ ++|.|-|+ +-.|.|+|..|++.| ++|.+..|++ +..+.+++.
T Consensus 1 M~--ktVlVTGas~GIG~aiA~~la~~G-a~Vvi~~r~~~~~~~~l~~~ 46 (236)
T PRK06483 1 MS--APILITGAGQRIGLALAKHLLAQG-QPVIVSYRSHYPAIDELRQA 46 (236)
T ss_pred CC--CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHHC
T ss_conf 99--879997899889999999999889-98999959847999999856
No 352
>PRK07074 short chain dehydrogenase; Provisional
Probab=92.88 E-value=0.41 Score=26.92 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=34.6
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 779997--7887899999999977998189994498999999977
Q gi|254781039|r 5 STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
.|+++| |++-.|.++|..|++.| .+|.+++|+++..+.+.++
T Consensus 2 nKvalITGgs~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~ 45 (256)
T PRK07074 2 SRTALVTGAAGGIGQALARRFLAAG-DRVLALDIDRAALAAFVDA 45 (256)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 9889998846899999999999869-9999997988999999998
No 353
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.85 E-value=0.13 Score=30.24 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=37.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 87799977887899999999977998189994498999999977
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
.++|.|+|+|..|+..|..|+..|.-+++|++.|.-....+|++
T Consensus 11 ~s~V~v~G~GGvGs~~a~~LarsGVG~l~lvD~D~v~~SNLnRQ 54 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQ 54 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCCHHHH
T ss_conf 49789988863689999999980997599971999045444433
No 354
>PRK07041 short chain dehydrogenase; Provisional
Probab=92.84 E-value=0.41 Score=26.95 Aligned_cols=42 Identities=26% Similarity=0.465 Sum_probs=33.1
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 77999778-87899999999977998189994498999999977
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
+++.|-|+ +-+|.++|..|++.| .+|.+.+|+++..+...+.
T Consensus 8 K~~lITGgs~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~ 50 (240)
T PRK07041 8 QKVLVVGGSSGIGLAAARAFAARG-ADVTIASRSRERLAAAARA 50 (240)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 989995778889999999999879-9999995988999999998
No 355
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.83 E-value=0.084 Score=31.42 Aligned_cols=38 Identities=29% Similarity=0.451 Sum_probs=31.3
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 77999778-8789999999997799818999449899999
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQ 43 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~ 43 (329)
+||.|.|+ |-.|+.++..|.+.| |+|+...|+......
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~G-~~V~~l~r~~~~~~~ 39 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLERG-EEVRVLVRPTSDRRN 39 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCCHHH
T ss_conf 949998677799999999999784-989999899986556
No 356
>PRK08703 short chain dehydrogenase; Provisional
Probab=92.82 E-value=0.53 Score=26.22 Aligned_cols=44 Identities=30% Similarity=0.489 Sum_probs=33.4
Q ss_pred CCCC--CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 9888--77999778-878999999999779981899944989999999
Q gi|254781039|r 1 MKNY--STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLE 45 (329)
Q Consensus 1 M~~~--~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~ 45 (329)
|.++ +++.|-|+ +-.|.++|..|++.| .+|.+.+|+++..+...
T Consensus 1 M~~L~gK~~lITGas~GIG~aiA~~la~~G-a~V~l~~r~~~~l~~~~ 47 (239)
T PRK08703 1 MATLSDKTILVTGASQGLGEQVAKAYAAAG-ATVILVARHQKKLEKVY 47 (239)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH
T ss_conf 948596989994886289999999999879-98999979888999999
No 357
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.81 E-value=0.47 Score=26.53 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=36.1
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 877999778-87899999999977998189994498999999977
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|+.+.|-|+ +-.|-|+|..|++.| .+|.+++|+++..+.+.++
T Consensus 1 MK~vlITGassGIG~a~A~~~a~~G-~~V~~~~r~~~~l~~~~~~ 44 (258)
T PRK08267 1 MKSIFITGAASGIGRATARLFAARG-WRVGAYDINEDGLAALAAE 44 (258)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 9989990722689999999999879-9999998889999999998
No 358
>PRK07479 consensus
Probab=92.78 E-value=0.49 Score=26.42 Aligned_cols=45 Identities=16% Similarity=0.345 Sum_probs=33.7
Q ss_pred CCCCCEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 9888779997--788789999999997799818999449899999997
Q gi|254781039|r 1 MKNYSTIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 1 M~~~~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|+=..|+++| |++..|.++|..|++.| .+|.+.+|+++..+.+.+
T Consensus 1 m~L~gK~alITGgs~GIG~a~a~~la~~G-~~V~i~~~~~~~~~~~~~ 47 (252)
T PRK07479 1 MRLSGKVAIVTGAGSGFGEGIAKRFAREG-AKVVVADLNAAAAERVAS 47 (252)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 98799889993887689999999999879-999999798999999999
No 359
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.76 E-value=0.8 Score=25.06 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=30.6
Q ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 98887--799977887899999999977998189994498
Q gi|254781039|r 1 MKNYS--TIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 1 M~~~~--kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|-+|. -+.|||+|.=|.+-|..+++.| .+|.++.+.+
T Consensus 1 ~m~m~~YDviVIGaGpaG~~aA~~aa~~G-~kV~viE~~~ 39 (465)
T PRK05249 1 MMHMYDYDAVVIGSGPAGEGAAMQAAKLG-KRVAVIERYR 39 (465)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC
T ss_conf 99877789899997789999999999789-9299997699
No 360
>PRK06194 hypothetical protein; Provisional
Probab=92.74 E-value=0.49 Score=26.42 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=35.0
Q ss_pred CCCC-CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 9888-779997--788789999999997799818999449899999997
Q gi|254781039|r 1 MKNY-STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 1 M~~~-~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|+++ .|++|| |++-+|.++|..|++.| .+|.+.+|+++..+...+
T Consensus 1 M~~l~gKvavITGassGIG~a~A~~la~~G-a~Vvl~d~~~~~l~~~~~ 48 (301)
T PRK06194 1 MKDFAGKVAVITGAASGFGREFARIGARLG-MKLVLADVQQDALDRAVA 48 (301)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989899989992737799999999999879-989999798899999999
No 361
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.72 E-value=0.28 Score=28.02 Aligned_cols=34 Identities=35% Similarity=0.569 Sum_probs=30.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 87799977887899999999977998189994498
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
+.++.|||+|-=|.+-|..|++.| .+|.++.++.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G-~~V~VlE~~~ 36 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAG-LKVTVLEKND 36 (487)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
T ss_conf 762999898878999999999689-9799996378
No 362
>KOG0399 consensus
Probab=92.69 E-value=0.32 Score=27.65 Aligned_cols=76 Identities=24% Similarity=0.339 Sum_probs=48.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH---------------------HHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 877999778878999999999779981899944989---------------------99999977898422798817874
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI---------------------LMQQLEDTRINAKALPGIKLSPL 62 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~---------------------~~~~i~~~~~n~~~lp~i~l~~~ 62 (329)
-++|+|||+|.-|.|-|..|.+.| |.|++|.|... .++-+.++++ .++.+..+-++
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~g-h~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi--~f~tn~eigk~ 1861 (2142)
T KOG0399 1785 GKRVAIIGSGPAGLAAADQLNKAG-HTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGI--RFVTNTEIGKH 1861 (2142)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCC--EEEEECCCCCC
T ss_conf 847999746841466899986447-679999715776745661687521327999999999886185--48850322565
Q ss_pred EEEEECHHHHHHHHHHHCCCCHH
Q ss_conf 38973168775555441122177
Q gi|254781039|r 63 LNFSSDHTLLQNADIVLFATSSK 85 (329)
Q Consensus 63 i~~t~~~~~l~~adiIiiavps~ 85 (329)
.+..+..+..|.|++|+-|.
T Consensus 1862 ---vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399 1862 ---VSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred ---CCHHHHHHCCCEEEEEECCC
T ss_conf ---56788753057599982788
No 363
>PRK06179 short chain dehydrogenase; Provisional
Probab=92.68 E-value=0.31 Score=27.77 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 988877999778-878999999999779981899944989999
Q gi|254781039|r 1 MKNYSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQ 42 (329)
Q Consensus 1 M~~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~ 42 (329)
|+|.+.+.|-|+ +-.|-|+|..|+++| .+|.+.+|+.+..+
T Consensus 1 M~~~KvalITGassGIG~a~A~~la~~G-~~V~~~~r~~~~~~ 42 (270)
T PRK06179 1 MSNKKVALVTGASSGIGRATAEALARAG-YRVFGTSRNPARAT 42 (270)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHH
T ss_conf 9899589990724699999999999879-99999968977730
No 364
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=92.68 E-value=0.64 Score=25.69 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=55.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 7799977887899999999977998189994498-999999977898422798817874389731687755554411221
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE-ILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~-~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
+++.|+|+|.-|..=+..|.+.| .+|++|..+. .....+.+.+. +.. +.-.-+.+.+.+++++|.|++
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~~~~el~~~~~~~~-------i~~---~~~~~~~~~~~~~~lviaAt~ 81 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAG-ADVTVVSPEFEPELKALIEEGK-------IKW---IEREFDAEDLDDAFLVIAATD 81 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHCC-------CCH---HHCCCCHHHHCCCEEEEEECC
T ss_conf 77999899899999999997469-9799987874499999998348-------531---002236365368249999169
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 77766655553320
Q gi|254781039|r 84 SKGYGEALNFYSNW 97 (329)
Q Consensus 84 s~~~~~~l~~i~~~ 97 (329)
-..+.+.+.+....
T Consensus 82 d~~ln~~i~~~a~~ 95 (210)
T COG1648 82 DEELNERIAKAARE 95 (210)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 98999999999999
No 365
>PRK09126 hypothetical protein; Provisional
Probab=92.64 E-value=0.23 Score=28.54 Aligned_cols=35 Identities=40% Similarity=0.671 Sum_probs=30.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9888779997788789999999997799818999449
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
|.. .-|.|+|+|--|.++|..|++.| .+|.++.+.
T Consensus 1 Mm~-~DV~IvGaGp~Gl~lA~~La~~G-~~v~viE~~ 35 (392)
T PRK09126 1 MMH-SDILVVGAGPAGLSFARSLAGSG-LKVTLIERQ 35 (392)
T ss_pred CCC-CCEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 998-99999992589999999998689-989999089
No 366
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=92.62 E-value=0.54 Score=26.17 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=50.4
Q ss_pred CCCC----CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEE-EEECHHHHH
Q ss_conf 9888----779997--788789999999997799818999449899999997789842279881787438-973168775
Q gi|254781039|r 1 MKNY----STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLN-FSSDHTLLQ 73 (329)
Q Consensus 1 M~~~----~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~-~t~~~~~l~ 73 (329)
|++| .|+++| |++-+|.|+|..|++.| .+|.+++|+++.+++-.+.-.. + +. ... +..|
T Consensus 2 m~~~f~l~gK~alVTG~s~GIG~aiA~~la~~G-a~Vii~~~~~~~~~~~~~~~~~---~-g~----~~~~~~~D----- 67 (265)
T PRK07097 2 MENMFSLKGKIALITGASYGIGFAIAKAYAEAG-ATIVFNDIKQELVDKGLAAYRE---L-GI----EAHGYVCD----- 67 (265)
T ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHH---C-CC----CEEEEEEC-----
T ss_conf 640419899989995857689999999999869-9999995998999999999995---4-99----17999932-----
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 555441122177766655553320356850552375200
Q gi|254781039|r 74 NADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 74 ~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
......++.+++++...+..-..+|+.+ |+.
T Consensus 68 -------vt~~~~v~~~~~~~~~~~g~iDiLVnNA-G~~ 98 (265)
T PRK07097 68 -------VTDEDGIQAMVAQIEKEVGVIDILVNNA-GII 98 (265)
T ss_pred -------CCCHHHHHHHHHHHHHHCCCCCEEEECC-CCC
T ss_conf -------8999999999999999829998999899-899
No 367
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=92.58 E-value=0.17 Score=29.50 Aligned_cols=33 Identities=30% Similarity=0.614 Sum_probs=29.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 7999778878999999999779981899944989
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
|+.|+|+|.-|.=+|..|++.| .+|+++.+.+.
T Consensus 1 rv~iiGgG~ig~E~A~~l~~~G-~~Vtiie~~~~ 33 (82)
T pfam00070 1 RVVVVGGGYIGLEFASALAKLG-SKVTVVERRDR 33 (82)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCC
T ss_conf 9999998899999999998639-27899812573
No 368
>PRK06482 short chain dehydrogenase; Provisional
Probab=92.54 E-value=0.54 Score=26.14 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=34.9
Q ss_pred CCEEEEE-CC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC
Q ss_conf 8779997-78-878999999999779981899944989999999778
Q gi|254781039|r 4 YSTIFVI-GA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR 48 (329)
Q Consensus 4 ~~kI~Vi-Ga-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~ 48 (329)
|+|+.+| |+ +-+|-++|..|.++| ++|....|+++.++.+...+
T Consensus 1 M~Kv~lITGaSsGiG~ala~~l~~~G-~~Vi~t~R~~~~l~~l~~~~ 46 (276)
T PRK06482 1 MTKTWFITGASSGFGRGLTERLLARG-DRVAATVRRPDALDDLKARY 46 (276)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHC
T ss_conf 99789991586599999999999889-98999978989999999866
No 369
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.53 E-value=0.55 Score=26.11 Aligned_cols=42 Identities=17% Similarity=0.402 Sum_probs=33.2
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 779997--7887899999999977998189994498999999977
Q gi|254781039|r 5 STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
.|+++| |++-.|.++|..|+++| .+|.+.+|+++..+...++
T Consensus 6 gK~alITGgs~GIG~aia~~la~~G-~~V~i~~r~~~~~~~~~~~ 49 (250)
T PRK07231 6 GKVAIVTGAGSGFGEGIARRFAAEG-ARVVVTDRNQEAAERVAAE 49 (250)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 9889993888689999999999879-9999997988999999998
No 370
>TIGR02371 ala_DH_arch alanine dehydrogenase; InterPro: IPR012742 This enzyme, a homologue of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other archaea..
Probab=92.52 E-value=0.37 Score=27.21 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=49.5
Q ss_pred CCCCEEEEECCCH--HHHHHHHH-HHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHH
Q ss_conf 8887799977887--89999999-9977998189994498999999977898422798817874389731-687755554
Q gi|254781039|r 2 KNYSTIFVIGAGA--FGTALSSV-IASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADI 77 (329)
Q Consensus 2 ~~~~kI~ViGaGa--~GtAlA~~-La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adi 77 (329)
++-+.+++||||. |=+-.|.. .++- .+|.+|+|.++-.+++-+.-. ..|- ..+.+..+ .|.+.+||+
T Consensus 127 kdssv~G~iGaG~QA~tQL~Al~rVfd~--eeV~~y~rt~~~~~kF~~~~s-kd~~------~~~~a~~~p~E~v~~cDi 197 (327)
T TIGR02371 127 KDSSVLGLIGAGRQAYTQLEALSRVFDL--EEVKVYSRTKEAAEKFVKRAS-KDYE------VPVRAATDPAEKVEDCDI 197 (327)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHH-CCCC------CCEEECCCCHHHHCCCCE
T ss_conf 1663355763685799999998762554--506998617688999998752-0246------512421267477707867
Q ss_pred HHCCCCHH
Q ss_conf 41122177
Q gi|254781039|r 78 VLFATSSK 85 (329)
Q Consensus 78 Iiiavps~ 85 (329)
++=.+||.
T Consensus 198 lVTtTPsR 205 (327)
T TIGR02371 198 LVTTTPSR 205 (327)
T ss_pred EEEECCCC
T ss_conf 99856898
No 371
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.52 E-value=0.64 Score=25.70 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=45.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCC
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877-55554411221
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLL-QNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l-~~adiIiiavp 83 (329)
++|+|-|.|+.|+.+|..|.+.| .+|...+.++.......+.. +. ...+..+.+ .+||+++-|--
T Consensus 29 k~VaIqG~GnVG~~~A~~l~~~G-akvvv~d~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~DIl~PcA~ 94 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG-AKLIVADINEEAVARAAELF-------GA------TVVAPEEIYSVDADVFAPCAL 94 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCC-------CC------EEECCHHHHCCCCCEEEECCC
T ss_conf 99999898799999999999679-97999826889999998568-------98------893733232277768865141
Q ss_pred HH
Q ss_conf 77
Q gi|254781039|r 84 SK 85 (329)
Q Consensus 84 s~ 85 (329)
..
T Consensus 95 ~~ 96 (200)
T cd01075 95 GG 96 (200)
T ss_pred CC
T ss_conf 15
No 372
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=92.51 E-value=0.41 Score=26.95 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=28.7
Q ss_pred CCEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 8779997--788789999999997799818999449899
Q gi|254781039|r 4 YSTIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEIL 40 (329)
Q Consensus 4 ~~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~ 40 (329)
|+|+++| |++-+|.++|..|+++| .+|.+..|+.+.
T Consensus 1 M~KvalITGas~GIG~a~a~~la~~G-~~Vv~~~~~~~~ 38 (245)
T PRK12824 1 MKKIALVTGAKRGIGSAIARELLADG-YRVIATYFGNYD 38 (245)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCHH
T ss_conf 98599994788889999999999879-989999588077
No 373
>PRK07775 short chain dehydrogenase; Provisional
Probab=92.46 E-value=0.41 Score=26.93 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=31.6
Q ss_pred CEEE-EEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 7799-977-88789999999997799818999449899999997
Q gi|254781039|r 5 STIF-VIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~-ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
+|++ |-| ++-+|.|+|..|++.| .+|.+.+|+.+..+.+.+
T Consensus 10 ~KtAlVTGAssGIG~aiA~~la~~G-~~V~l~~R~~e~l~~~~~ 52 (275)
T PRK07775 10 RRPAIVAGASSGIGAATAIELAAHG-FPVALGARRVEKCEEIVD 52 (275)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 9979994623599999999999879-989999898999999999
No 374
>PRK07233 hypothetical protein; Provisional
Probab=92.45 E-value=0.21 Score=28.81 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=28.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 799977887899999999977998189994498
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
||.|||+|-=|.+-|..|++.| ++|+++..++
T Consensus 1 rVvVIGaG~aGLsaA~~L~~~G-~~V~VlEa~~ 32 (430)
T PRK07233 1 KIAIIGGGIMGLAAAYRLAKAG-HEVTVFEADD 32 (430)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC
T ss_conf 9899997789999999998399-9889995899
No 375
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=92.43 E-value=0.54 Score=26.14 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=33.5
Q ss_pred CCCCC----EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 98887----79997--788789999999997799818999449899999997
Q gi|254781039|r 1 MKNYS----TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 1 M~~~~----kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|++|- |+++| |++-.|.++|..|++.| .+|.+++++++..+...+
T Consensus 1 m~~~~~L~gK~alVTG~~~GIG~aiA~~la~~G-a~Vvi~~~~~~~~~~~~~ 51 (254)
T PRK08085 1 MNDLFSLAGKNILITGSAQGIGFLLATGLAEYG-AEIIINDITAERAEKAVA 51 (254)
T ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 996728999989996856789999999999869-999999698899999999
No 376
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.43 E-value=0.87 Score=24.81 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=59.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCE-------EE-EEC-------
Q ss_conf 877999778878999999999779981899944989999999778984227988178743-------89-731-------
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLL-------NF-SSD------- 68 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i-------~~-t~~------- 68 (329)
-.|+.|||+|.=|..=+.....-| ..|+.++.+++..+++..-+- +++. +.+.+.- +. +.+
T Consensus 165 PAkVlViGaGVAGlqAi~tA~~LG-A~V~a~DvR~~~~EqveSlGa--~fv~-v~~~e~~~~~gGYAk~~s~e~~~~q~~ 240 (510)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVKEQVESMGA--EFLE-LDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (510)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHCC--CEEE-EECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 852899746477799999996279-789996587889999997067--4255-210102445785035456789999999
Q ss_pred --HHHHHHHHHHHCCCCHHHH--HH-HHHHHHHHCCCCCCEEECC
Q ss_conf --6877555544112217776--66-5555332035685055237
Q gi|254781039|r 69 --HTLLQNADIVLFATSSKGY--GE-ALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 69 --~~~l~~adiIiiavps~~~--~~-~l~~i~~~l~~~~~ii~~s 108 (329)
.+.++++|+||-++--.+- .- +-++.-...+++..||.++
T Consensus 241 ~~~e~~~~aDiVItTalIPG~~AP~LIt~emV~~MKpGSVIVDlA 285 (510)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPKLITKEMVDSMKPGSVIVDLA 285 (510)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHCCCCCEEEEEC
T ss_conf 999997424779986541899899703799995269997899952
No 377
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=92.39 E-value=0.2 Score=29.02 Aligned_cols=28 Identities=36% Similarity=0.592 Sum_probs=24.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99977887899999999977998189994
Q gi|254781039|r 7 IFVIGAGAFGTALSSVIASRGLANVTLLG 35 (329)
Q Consensus 7 I~ViGaGa~GtAlA~~La~~g~~~V~l~~ 35 (329)
+-|||||.||++-|.+||+.+ .++.|..
T Consensus 3 vIVvGAG~~G~~aaY~LAK~~-~~~LLle 30 (401)
T TIGR01377 3 VIVVGAGIMGCFAAYHLAKRG-KKTLLLE 30 (401)
T ss_pred EEEECCCHHHHHHHHHHHHCC-CEEEEEE
T ss_conf 799817613568999987538-6178875
No 378
>PRK07677 short chain dehydrogenase; Provisional
Probab=92.39 E-value=0.51 Score=26.31 Aligned_cols=41 Identities=27% Similarity=0.516 Sum_probs=32.2
Q ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 79997--7887899999999977998189994498999999977
Q gi|254781039|r 6 TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 6 kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|+++| |++-.|.++|..|++.| .+|.+.+|+++..+...+.
T Consensus 4 K~alVTGgs~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~ 46 (254)
T PRK07677 4 KVVIITGGSSGMGKAMAKRFAEEG-ANVVITGRTKEKLEEAKLE 46 (254)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 989995876789999999999879-9999996999999999999
No 379
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.37 E-value=0.64 Score=25.68 Aligned_cols=87 Identities=22% Similarity=0.276 Sum_probs=51.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECH----HHH--HHHHHHH
Q ss_conf 7999778878999999999779981899944989999999778984227988178743897316----877--5555441
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDH----TLL--QNADIVL 79 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~----~~l--~~adiIi 79 (329)
++.|+|+|..|...+..+...|..+|.+.+++++..+.-.+..-.. ...+..-. ... +.. ..+|++|
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-----~~~~~~~~--~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-----VVVNPSED--DAGAEILELTGGRGADVVI 243 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCC-----EEECCCCH--HHHHHHHHHCCCCCCCEEE
T ss_conf 8999888899999999998769827999799989999999877971-----87246301--4788999860898799999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 12217776665555332035685
Q gi|254781039|r 80 FATSSKGYGEALNFYSNWLKESA 102 (329)
Q Consensus 80 iavps~~~~~~l~~i~~~l~~~~ 102 (329)
-|+-+.. .+++....+++.-
T Consensus 244 e~~G~~~---~~~~ai~~~r~gG 263 (350)
T COG1063 244 EAVGSPP---ALDQALEALRPGG 263 (350)
T ss_pred ECCCCHH---HHHHHHHHCCCCC
T ss_conf 9989979---9999999602598
No 380
>PRK05872 short chain dehydrogenase; Provisional
Probab=92.33 E-value=0.6 Score=25.87 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=33.5
Q ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 79997--7887899999999977998189994498999999977
Q gi|254781039|r 6 TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 6 kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|+.+| |++-.|.++|..|++.| .+|.+.+|+++..+++.++
T Consensus 10 KvalITGassGIG~aiA~~la~~G-a~Vvl~dr~~~~l~~~~~~ 52 (296)
T PRK05872 10 KVVFVTGAARGVGAELARRLHARG-AKVALVDLEEAELAALAAE 52 (296)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 879992710589999999999879-9899998999999999998
No 381
>PRK00811 spermidine synthase; Provisional
Probab=92.29 E-value=0.91 Score=24.68 Aligned_cols=99 Identities=19% Similarity=0.293 Sum_probs=58.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC---C-CCCEEEE-EC-HHHHH--
Q ss_conf 888779997788789999999997799818999449899999997789842279881---7-8743897-31-68775--
Q gi|254781039|r 2 KNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIK---L-SPLLNFS-SD-HTLLQ-- 73 (329)
Q Consensus 2 ~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~---l-~~~i~~t-~~-~~~l~-- 73 (329)
.+.++|.|||+|--|++= -.|-.++..+|.+...|+++++..++ |||.+. + .+.++.. .| ..-++
T Consensus 77 ~~pk~VLIiGGGDGg~~r-E~lkh~~v~~v~~VeiD~~Vi~~~~~------~lp~~~~~~~~dprv~~~~~Dg~~fv~~~ 149 (283)
T PRK00811 77 PNPKKVLIIGGGDGGTLR-EVLKHPSVEKITMVEIDERVVEMSRK------YLPEISGGAWDDPRVELVIGDGVKFVRET 149 (283)
T ss_pred CCCCEEEEECCCCHHHHH-HHHCCCCCCEEEEEECCHHHHHHHHH------HHHHHHHHHCCCCCEEEEHHHHHHHHHHC
T ss_conf 997748995687479999-98427885679999468999999999------83886313302971599827899999845
Q ss_pred --HHHHHHCCCCH-------HHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf --55544112217-------77666555533203568505523
Q gi|254781039|r 74 --NADIVLFATSS-------KGYGEALNFYSNWLKESAEIIIC 107 (329)
Q Consensus 74 --~adiIiiavps-------~~~~~~l~~i~~~l~~~~~ii~~ 107 (329)
.-|+||+-.|- -+-+++.+.++..|+++-.++.=
T Consensus 150 ~~~yDvII~D~tDP~gpa~~Lft~~Fy~~~~~~L~~~Gi~v~Q 192 (283)
T PRK00811 150 ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEGGIFVAQ 192 (283)
T ss_pred CCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHCCCCCEEEEC
T ss_conf 2355489980899886445534599999999853999589992
No 382
>TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190 This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised ..
Probab=92.20 E-value=0.25 Score=28.38 Aligned_cols=149 Identities=17% Similarity=0.317 Sum_probs=88.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCE-EEEEECC-HHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHH
Q ss_conf 988877999778878999999999779981-8999449-89999999778984227988178743897316877555544
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLAN-VTLLGRK-EILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIV 78 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~-V~l~~r~-~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiI 78 (329)
|++. +.+|+|-||.|...-..+..+-+-+ |-++.|. ++..+ +.++ +| +-.+..+.+...+-|+.
T Consensus 1 M~ki-RaaIVGYGNlG~~V~~ai~~~PDmElvgv~~Rrd~~t~~-va~~------~~------vy~V~~~~K~~~dvdv~ 66 (326)
T TIGR01921 1 MSKI-RAAIVGYGNLGKSVEEAIQQAPDMELVGVFRRRDAETLD-VAEE------LA------VYAVVEDEKELEDVDVL 66 (326)
T ss_pred CCEE-EEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCC-HHHC------CC------HHHHHHHHHCCCCEEEE
T ss_conf 9705-788862232007999998408980489988707887576-1122------52------02222223202882599
Q ss_pred HCCCCHH---------------------------HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHC-
Q ss_conf 1122177---------------------------766655553320356850552375200025854310123321001-
Q gi|254781039|r 79 LFATSSK---------------------------GYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSH- 130 (329)
Q Consensus 79 iiavps~---------------------------~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~- 130 (329)
|+|.||. .++++++.-+.- ...+=.++-|-+|+...+.=-+.+-++|..
T Consensus 67 iLC~gsatd~pe~~p~fA~~~nTvDsfD~H~~Ip~~r~~~DaaA~~---~g~VSvis~GWDPG~fSi~Rv~geA~lp~g~ 143 (326)
T TIGR01921 67 ILCTGSATDLPEQKPYFAAFINTVDSFDIHTDIPDLRRTLDAAAKE---AGAVSVISAGWDPGLFSINRVLGEAILPKGI 143 (326)
T ss_pred EECCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH---CCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9738864555434510012210123650224207899999999986---1987899834788726799999997501686
Q ss_pred CCEECCCCCHHHH------HHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 2100128881789------987653212467731789999997
Q gi|254781039|r 131 SISVLSGPGFARD------IAQGLPVGVILSSKNIDISRRLSK 167 (329)
Q Consensus 131 ~~~vlsGPs~A~E------ia~~~pt~~~ia~~d~~~~~~i~~ 167 (329)
.+..+ ||.+..- =.+|.-.++..-=+..+..+++++
T Consensus 144 tyTfw-GpGlS~GHsdAvrrIdGVk~Av~yTlP~~DA~E~~R~ 185 (326)
T TIGR01921 144 TYTFW-GPGLSQGHSDAVRRIDGVKAAVQYTLPIKDALEKVRR 185 (326)
T ss_pred EEEEE-CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 13323-7886643589887656678886417885788898626
No 383
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.16 E-value=0.3 Score=27.86 Aligned_cols=70 Identities=24% Similarity=0.472 Sum_probs=51.2
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 7799977-887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 5 STIFVIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
++++|+| +.-.|--+|..|.++| ..|++..+.. .+..+.+++||++|.|+.
T Consensus 29 k~vvVvGrS~~VG~Pla~lL~~~~-atVt~~hs~t---------------------------~~l~~~~~~ADIvI~a~G 80 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDG-ATVYSCDWKT---------------------------IQLQSKVHDADVVVVGSP 80 (140)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCC---------------------------CCHHHHHHHCCEEEECCC
T ss_conf 999999998124999999999788-9899946999---------------------------598998523499998168
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 777666555533203568505523
Q gi|254781039|r 84 SKGYGEALNFYSNWLKESAEIIIC 107 (329)
Q Consensus 84 s~~~~~~l~~i~~~l~~~~~ii~~ 107 (329)
...+- =.+++++++.+|.+
T Consensus 81 ~p~~i-----~~~~vk~GavvIDv 99 (140)
T cd05212 81 KPEKV-----PTEWIKPGATVINC 99 (140)
T ss_pred CCCCC-----CHHHCCCCCEEEEE
T ss_conf 76727-----89776799889980
No 384
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=92.15 E-value=0.5 Score=26.37 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=31.6
Q ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 79997--788789999999997799818999449899999997
Q gi|254781039|r 6 TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 6 kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|+++| |++-+|.++|..|++.| .+|.+++|+++..+.+.+
T Consensus 4 KvalITG~s~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~ 45 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEG-AKVAVFDLNREAAEKVAA 45 (250)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 999996857689999999999879-999999798899999999
No 385
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.15 E-value=0.47 Score=26.54 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=6.8
Q ss_pred CCCEEEEEEECC
Q ss_conf 321015776447
Q gi|254781039|r 242 GVGDLILTATSE 253 (329)
Q Consensus 242 G~GDl~~T~~s~ 253 (329)
|--|.+..|++.
T Consensus 234 g~~Dvvie~~G~ 245 (343)
T PRK09880 234 GYFDVSFEVSGH 245 (343)
T ss_pred CCCCEEEEECCC
T ss_conf 997789992199
No 386
>PRK05693 short chain dehydrogenase; Provisional
Probab=92.12 E-value=0.78 Score=25.11 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=35.7
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC
Q ss_conf 877999778-878999999999779981899944989999999778
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR 48 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~ 48 (329)
|+.+.|-|+ +-+|-|+|..|+++| .+|.+.+|+++.++.+...+
T Consensus 1 MKvvlITGassGIG~alA~~la~~G-~~V~~~~R~~~~l~~l~~~~ 45 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAG-YEVWATARKAEDVEALAAAG 45 (274)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCC
T ss_conf 9989994888589999999999879-99999979999999998489
No 387
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.08 E-value=0.68 Score=25.53 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=33.6
Q ss_pred CCCC-CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 9888-779997--788789999999997799818999449899999997
Q gi|254781039|r 1 MKNY-STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 1 M~~~-~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|..+ .|+++| |++-.|.++|..|++.| .+|.+.+|+++..+...+
T Consensus 1 Mm~L~gKvalVTGas~GIG~aiA~~la~~G-a~Vvi~~r~~~~l~~~~~ 48 (254)
T PRK07478 1 MMLLNGKVAIITGASSGIGRAAAKLFAREG-AKVVVGARRQAELDQLVA 48 (254)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 988899879995887689999999999879-999999798899999999
No 388
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme; InterPro: IPR006316 These sequences represent a family of pyridoxal-phosphate dependent enzymes that are closely related to the beta subunit of tryptophan synthase. ; GO: 0004834 tryptophan synthase activity, 0030170 pyridoxal phosphate binding, 0000162 tryptophan biosynthetic process.
Probab=92.02 E-value=0.17 Score=29.50 Aligned_cols=147 Identities=17% Similarity=0.110 Sum_probs=67.0
Q ss_pred ECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHH--HH---HHHCCCC
Q ss_conf 77887899999999977998189994498999999977898422798817874389731-687755--55---4411221
Q gi|254781039|r 10 IGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQN--AD---IVLFATS 83 (329)
Q Consensus 10 iGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~--ad---iIiiavp 83 (329)
=|||.||||++..-+.-+ -++++|-.....-+...+.-. -..+.+-.+|.--..|+. .+.++. .| -+=||+
T Consensus 127 TGAGQWG~AlS~A~al~~-L~~~VfMvr~Sf~~KP~Rk~l-M~~yGa~V~PSPS~~T~~GR~~L~e~gP~~PGSLGiAI- 203 (426)
T TIGR01415 127 TGAGQWGSALSLAGALFG-LKVKVFMVRVSFQQKPYRKYL-MELYGAEVIPSPSELTEFGRKVLKEDGPDHPGSLGIAI- 203 (426)
T ss_pred CCCCHHHHHHHHHHHHHC-CEEEEEEEECCHHCCHHHHHH-HHHCCCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHH-
T ss_conf 688647899999998728-925898874121048468999-98708843368877513468887406777786167899-
Q ss_pred HHHHHHHHHHH-HHHCC----CCCCEEECCCCCCCCCCC-----CCCHHHHHHHHHCCCEECCCCCHHHHHHHHH--HHH
Q ss_conf 77766655553-32035----685055237520002585-----4310123321001210012888178998765--321
Q gi|254781039|r 84 SKGYGEALNFY-SNWLK----ESAEIIICSKGFEYNSGM-----LLSSYSEKVLPSHSISVLSGPGFARDIAQGL--PVG 151 (329)
Q Consensus 84 s~~~~~~l~~i-~~~l~----~~~~ii~~sKGi~~~t~~-----~~se~i~~~~~~~~~~vlsGPs~A~Eia~~~--pt~ 151 (329)
|-.+++++++= ..|+- +...+--..=|+|....+ .++-++--+-..-|++.++=|-.++++.+|+ .-.
T Consensus 204 SEA~e~al~~~~~~Y~lGSVLnhvLlHqTViGLEaKkQlE~~Ge~PD~~~GcVGGGSNFaG~~fPf~~D~Ls~G~~~~~~ 283 (426)
T TIGR01415 204 SEAIEEALSDEDTKYSLGSVLNHVLLHQTVIGLEAKKQLEEAGEKPDVIIGCVGGGSNFAGLAFPFVADKLSSGKKFEDL 283 (426)
T ss_pred HHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCHHHHHHCCCCCEEEE
T ss_conf 99999997089944446305666788766787645553241079998899973385447877501122341478731334
Q ss_pred CCCCCCHH
Q ss_conf 24677317
Q gi|254781039|r 152 VILSSKNI 159 (329)
Q Consensus 152 ~~ia~~d~ 159 (329)
-.||+...
T Consensus 284 ~fiA~Ep~ 291 (426)
T TIGR01415 284 RFIAAEPK 291 (426)
T ss_pred EEEEECCC
T ss_conf 78874730
No 389
>PRK06914 short chain dehydrogenase; Provisional
Probab=92.01 E-value=0.58 Score=25.97 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=33.8
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 988877999778-87899999999977998189994498999999977
Q gi|254781039|r 1 MKNYSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 1 M~~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|++ +.+.|-|+ .-+|-++|..|++.| .+|.+..|+++..+.+.+.
T Consensus 1 l~~-K~alITGassGIG~a~A~~la~~G-~~V~~~~r~~~~~~~l~~~ 46 (280)
T PRK06914 1 MNK-KIAIITGASSGFGLLTTLELAKKD-YLVIATMRNLEKQENLISQ 46 (280)
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 951-989990734499999999999879-9899998988999999999
No 390
>PRK06953 short chain dehydrogenase; Provisional
Probab=92.00 E-value=0.67 Score=25.56 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=36.4
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC
Q ss_conf 877999778-878999999999779981899944989999999778
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR 48 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~ 48 (329)
|+++.|-|+ .-.|.++|..|+++| ++|.+.+|+++..+.++..+
T Consensus 1 MK~~LVTGas~GIG~a~a~~la~~G-~~V~~~~R~~~~l~~l~~~~ 45 (222)
T PRK06953 1 MKTVLIVGASRGIGLEFVRQYRADG-WRVIATARDAAGLAALRALG 45 (222)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCC
T ss_conf 9999994757299999999999888-99999968888899988421
No 391
>PRK08263 short chain dehydrogenase; Provisional
Probab=91.96 E-value=0.61 Score=25.83 Aligned_cols=42 Identities=24% Similarity=0.463 Sum_probs=33.6
Q ss_pred CEEEEE-CC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 779997-78-87899999999977998189994498999999977
Q gi|254781039|r 5 STIFVI-GA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~Vi-Ga-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
.|+.+| |+ .-.|-++|..|+++| .+|.+.+|+++..+.+.+.
T Consensus 3 gKv~lITGassGIG~a~A~~la~~G-~~Vv~~~R~~~~l~~l~~~ 46 (275)
T PRK08263 3 GKVWFITGASRGFGREWTEAALERG-DRVVATARDTATLADLAER 46 (275)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 9989994674399999999999879-9899997989999999997
No 392
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.95 E-value=0.76 Score=25.22 Aligned_cols=42 Identities=21% Similarity=0.447 Sum_probs=34.4
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 7799977-887899999999977998189994498999999977
Q gi|254781039|r 5 STIFVIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
+++.|-| ++-.|.|+|..|++.| .+|.+.+|+++..+.+.+.
T Consensus 6 K~~lVTGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~~ 48 (238)
T PRK05786 6 KNVLIVGVSPGLGYAVAYFALREG-ASVYAFARSEEKLKEIKKT 48 (238)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 889992898789999999999879-9999996988999999998
No 393
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=91.91 E-value=0.65 Score=25.65 Aligned_cols=46 Identities=30% Similarity=0.528 Sum_probs=36.4
Q ss_pred CCCC-CEE-EEECCC-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 9888-779-997788-7899999999977998189994498999999977
Q gi|254781039|r 1 MKNY-STI-FVIGAG-AFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 1 M~~~-~kI-~ViGaG-a~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|++. .|| .|=||. -+|.|.|..|++.| ++|.+.+|+.+..+.+..+
T Consensus 1 m~~~~~kv~lITGASSGiG~A~A~~l~~~G-~~vvl~aRR~drL~~la~~ 49 (246)
T COG4221 1 MTTLKGKVALITGASSGIGEATARALAEAG-AKVVLAARREERLEALADE 49 (246)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 987778689994686568899999999789-9699986368899999986
No 394
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.91 E-value=0.74 Score=25.27 Aligned_cols=41 Identities=22% Similarity=0.444 Sum_probs=31.7
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 7799977-88789999999997799818999449899999997
Q gi|254781039|r 5 STIFVIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
+.+.|-| ++..|.|+|..|+++| .+|.+++|+++..+...+
T Consensus 6 K~~lITGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~ 47 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKG-AKLALIDLNQEKLEEAVA 47 (253)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 889994887789999999999879-989999799999999999
No 395
>pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Probab=91.87 E-value=0.38 Score=27.14 Aligned_cols=83 Identities=27% Similarity=0.467 Sum_probs=57.2
Q ss_pred CEEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 7799977887-899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 5 STIFVIGAGA-FGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViGaGa-~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
++++|+|.+. .|--|+..|.+++ ..|++..+.. .+..+.+++||++|.|+.
T Consensus 37 k~vvViGrS~iVG~Pla~lL~~~~-atVtichs~T---------------------------~nl~~~~~~ADIvI~A~G 88 (159)
T pfam02882 37 KNVVVIGRSNIVGKPLALLLLNAN-ATVTVCHSKT---------------------------KDLAEITREADIVVVAVG 88 (159)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCC---------------------------CCHHHHHHCCCEEEEECC
T ss_conf 669998887314899999998779-9899981899---------------------------997896300344423158
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCC-CCCCCCCHH
Q ss_conf 777666555533203568505523752000-258543101
Q gi|254781039|r 84 SKGYGEALNFYSNWLKESAEIIICSKGFEY-NSGMLLSSY 122 (329)
Q Consensus 84 s~~~~~~l~~i~~~l~~~~~ii~~sKGi~~-~t~~~~se~ 122 (329)
...+ ++ ..++++++.+|.+ |+.. +.+++.-|+
T Consensus 89 ~p~~---i~--~~~ik~gavvIDv--Gi~~~~~gkl~GDv 121 (159)
T pfam02882 89 KPGL---IK--ADWVKPGAVVIDV--GINRVENGKLVGDV 121 (159)
T ss_pred CCCC---CC--HHHCCCCCEEEEE--CCCCCCCCCEECCC
T ss_conf 8550---56--9885899889980--22065899675787
No 396
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.78 E-value=0.79 Score=25.08 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=30.2
Q ss_pred CCCC--CEEEEECCC-HHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHH
Q ss_conf 9888--779997788-789999999997799818999449-89999999
Q gi|254781039|r 1 MKNY--STIFVIGAG-AFGTALSSVIASRGLANVTLLGRK-EILMQQLE 45 (329)
Q Consensus 1 M~~~--~kI~ViGaG-a~GtAlA~~La~~g~~~V~l~~r~-~~~~~~i~ 45 (329)
|+.+ +++.|.|++ -.|.|+|..|+++| .+|.+.+|+ ++..+...
T Consensus 2 m~~LkgK~~lITGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~ 49 (250)
T PRK12825 2 MGSLSGRVALVTGAARGIGRAIALRLAAAG-ADVIVHPPSDEAAAEETV 49 (250)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHH
T ss_conf 866097889993895589999999999879-989999798878999999
No 397
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=91.76 E-value=0.25 Score=28.30 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 999778878999999999779981899944989
Q gi|254781039|r 7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 7 I~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
+.|||||-=|.|+|..|+..| ++|++..++..
T Consensus 1 a~VIGAG~gGLA~A~rL~~~G-~~vtv~E~~d~ 32 (526)
T TIGR02734 1 AVVIGAGFGGLALAIRLQAAG-IRVTVVEKRDK 32 (526)
T ss_pred CEEECCCHHHHHHHHHHHHCC-CEEEEEEECCC
T ss_conf 968577768999999997379-52899860689
No 398
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=91.72 E-value=0.44 Score=26.76 Aligned_cols=33 Identities=33% Similarity=0.633 Sum_probs=29.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8779997788789999999997799818999449
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
-+++.|||+|..|.=+|..|++.| .+|++..+.
T Consensus 137 ~k~vvViGgG~IGlE~A~~l~~~G-~~Vtvve~~ 169 (427)
T TIGR03385 137 VDRVVIIGGGYIGLEMVEALRERG-KNVTLIHRS 169 (427)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEEC
T ss_conf 988999996399999999999769-989999846
No 399
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.72 E-value=0.79 Score=25.09 Aligned_cols=181 Identities=22% Similarity=0.229 Sum_probs=94.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH---------------H---HHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 98887799977887899999999977998189994498---------------9---99999977898422798817874
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE---------------I---LMQQLEDTRINAKALPGIKLSPL 62 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~---------------~---~~~~i~~~~~n~~~lp~i~l~~~ 62 (329)
|..+..+.|||+|.=|...|..+++.|.. |.+..+++ . .++.+..-++... ..|+.....
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~k-valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~-~~Gi~~~~~ 78 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLK-VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAK-EYGISAEVP 78 (454)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCEECCCC
T ss_conf 98515489989777799999999967997-7999306986765574673144999999999999864142-365205778
Q ss_pred EEEEECHHHHHHHHHHHCCCCHHHHHHHHHHH--------HHHCCCCCCEEECC-------CCCCCCCCCC---------
Q ss_conf 38973168775555441122177766655553--------32035685055237-------5200025854---------
Q gi|254781039|r 63 LNFSSDHTLLQNADIVLFATSSKGYGEALNFY--------SNWLKESAEIIICS-------KGFEYNSGML--------- 118 (329)
Q Consensus 63 i~~t~~~~~l~~adiIiiavps~~~~~~l~~i--------~~~l~~~~~ii~~s-------KGi~~~t~~~--------- 118 (329)
-.+..+..+..+- +.-.-.+..+..++.. ..+..+++.-|.-. |=+...||..
T Consensus 79 --~~d~~~~~~~k~~-v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~ 155 (454)
T COG1249 79 --KIDFEKLLARKDK-VVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGI 155 (454)
T ss_pred --CCCHHHHHHHHHH-HHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCEEEEECEEEEECCCCCCCCCCCCC
T ss_conf --5389999999999-9998767799999748988999899988899899906875499827899906998778998898
Q ss_pred -------CCHHH-HHHHHHCCCEECCCCCHHHHHHHHHH---HH--------CCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf -------31012-33210012100128881789987653---21--------2467731789999997534111389973
Q gi|254781039|r 119 -------LSSYS-EKVLPSHSISVLSGPGFARDIAQGLP---VG--------VILSSKNIDISRRLSKILTTDSFRVYCS 179 (329)
Q Consensus 119 -------~se~i-~~~~~~~~~~vlsGPs~A~Eia~~~p---t~--------~~ia~~d~~~~~~i~~~~~~~~~~~~~s 179 (329)
.++.+ ...+|. +++++.|--++-|++.--- +- -.+...|.+.++.+.+.|....++++.+
T Consensus 156 ~~~~~~~s~~~l~~~~lP~-~lvIiGgG~IG~E~a~~~~~LG~~VTive~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~ 234 (454)
T COG1249 156 DGARILDSSDALFLLELPK-SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLN 234 (454)
T ss_pred CCCEEEECCCCCCCCCCCC-EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEECC
T ss_conf 8874883534136010798-799989888999999999986997899946887788779999999999998589599835
Q ss_pred CCCCEEEE
Q ss_conf 88614444
Q gi|254781039|r 180 DDRIGVQI 187 (329)
Q Consensus 180 ~D~~GvE~ 187 (329)
.-+..++-
T Consensus 235 ~~v~~~~~ 242 (454)
T COG1249 235 TKVTAVEK 242 (454)
T ss_pred CEEEEEEE
T ss_conf 36999981
No 400
>PRK09135 pteridine reductase; Provisional
Probab=91.68 E-value=0.69 Score=25.48 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=32.8
Q ss_pred CCCCCEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH
Q ss_conf 9888779997--78878999999999779981899944-989999999
Q gi|254781039|r 1 MKNYSTIFVI--GAGAFGTALSSVIASRGLANVTLLGR-KEILMQQLE 45 (329)
Q Consensus 1 M~~~~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r-~~~~~~~i~ 45 (329)
|+...|+++| |++-.|.++|..|++.| .+|.+..| +++..+.+.
T Consensus 2 M~~sgKvalVTGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~ 48 (249)
T PRK09135 2 MTDSSKVALITGGARRIGAAIARTLHAAG-YRVAVHYHRSAAEADALA 48 (249)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHH
T ss_conf 78999889996887589999999999879-989998189879999999
No 401
>PRK06346 consensus
Probab=91.67 E-value=0.81 Score=25.03 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=32.6
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 779997--788789999999997799818999449899999997
Q gi|254781039|r 5 STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
.|++|| |++-.|.++|..|+++| .+|.+.+|+++..+...+
T Consensus 5 gKv~lITGgs~GIG~a~a~~la~~G-a~V~i~~r~~e~~~~~~~ 47 (251)
T PRK06346 5 GKVAIVTGAASGMGKSIAELFAKEG-AKVVVADLNLERAQKVVE 47 (251)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 9889994757889999999999879-989999798999999999
No 402
>PRK08862 short chain dehydrogenase; Provisional
Probab=91.62 E-value=0.96 Score=24.54 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=31.2
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 77999778-8789999999997799818999449899999997
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
+.+.|-|+ +..|.++|..|++.| .+|.+.+|+++.+++..+
T Consensus 6 Kv~lITGas~GIG~aiA~~~A~~G-a~Vii~~r~~~~l~~~~~ 47 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLG-ATLILCDQDQSALNDTYE 47 (227)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 999997988799999999999879-999999699999999999
No 403
>pfam08546 ApbA_C Ketopantoate reductase PanE/ApbA C terminal. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=91.61 E-value=0.98 Score=24.49 Aligned_cols=91 Identities=10% Similarity=0.091 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCHHCCCEECHHHHHHHHH
Q ss_conf 05789999998999999998722544553200232101577644775300678775089070257296003199999999
Q gi|254781039|r 209 DSARAIVMVQGLSEIMKLTEAMNGRADTILRLSGVGDLILTATSEQSRNFCFGIALGRGEKQNPDQIQLVEGAIAVSCVI 288 (329)
Q Consensus 209 ~N~~aal~~~g~~Em~~l~~~~g~~~~t~~glaG~GDl~~T~~s~~SRN~~~G~~lg~g~~~~~~~~~~vEG~~~~~~i~ 288 (329)
+.....++.+.+.|...++++.|-+...-.-.-.+-++.- ..+.. --++-+.+-+|. -.|--.....+.
T Consensus 33 ~~~~~~l~~~l~~E~~~Va~a~Gi~l~~~~~~~~~~~~~~--~~~~~-~~SM~~D~~~gr--------~tEid~i~G~vv 101 (125)
T pfam08546 33 SPEARELIRALMDEAVAVARAEGVALPEDDLVEAVLRVAR--KTPAN-KSSMLQDIEAGR--------PTEIDAINGYVV 101 (125)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HCCCC-CCHHHHHHHCCC--------CCCHHHHHHHHH
T ss_conf 9589999999999999999981899998999999999985--17999-968999988099--------750999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHC
Q ss_conf 9999828987159999999807
Q gi|254781039|r 289 NISKKMGLKLPIFQAISDVMMN 310 (329)
Q Consensus 289 ~l~~~~~~~~Pi~~~v~~il~~ 310 (329)
++++++|+++|..+.+|+++..
T Consensus 102 ~~a~~~gi~~P~~~~~~~~lk~ 123 (125)
T pfam08546 102 RLARKLGVPTPTNETLYELLKA 123 (125)
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999978899789999999987
No 404
>PRK07776 consensus
Probab=91.56 E-value=0.88 Score=24.79 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=32.5
Q ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 79997--7887899999999977998189994498999999977
Q gi|254781039|r 6 TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 6 kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|+++| |++-.|.++|..|++.| .+|.+++|+++..+...++
T Consensus 9 Kv~lITG~~~GIG~aiA~~la~~G-a~V~i~~~~~~~l~~~~~~ 51 (252)
T PRK07776 9 RTAIVTGASRGIGLAIAQALAAAG-ANVVITARKQEALDEAAAQ 51 (252)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 989994778799999999999879-9899997988999999998
No 405
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=91.56 E-value=0.32 Score=27.67 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=30.1
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 87799977-88789999999997799818999449899999
Q gi|254781039|r 4 YSTIFVIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQ 43 (329)
Q Consensus 4 ~~kI~ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~ 43 (329)
|+||.|.| +|=.|+.|+..|.+++..+|...++..+....
T Consensus 1 MKkILVTGgaGFIGs~Lv~~Ll~~~~~~V~~~d~~~~~~~~ 41 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLTKRILETTDWEVYGMDMQTDRLGD 41 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 98899975743899999999998289789999799763677
No 406
>KOG0685 consensus
Probab=91.56 E-value=0.44 Score=26.76 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=28.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 87799977887899999999977998189994
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLG 35 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~ 35 (329)
..||+|||||.=|.+-|..|.++|..+|+++-
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE 52 (498)
T KOG0685 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILE 52 (498)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 96499989856779999999982896489997
No 407
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=91.53 E-value=0.18 Score=29.20 Aligned_cols=32 Identities=41% Similarity=0.697 Sum_probs=15.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 877999778878999999999779981899944
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGR 36 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r 36 (329)
|+++.|||+|+.|.=+|+.+++-| .+|.|..|
T Consensus 181 m~sL~vIGgg~~g~E~aQ~faRLG-~~V~~~~R 212 (494)
T TIGR02053 181 MESLVVIGGGAIGVELAQAFARLG-SEVTILQR 212 (494)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCC-CEEEHHHH
T ss_conf 046888865289999999998577-61403679
No 408
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=91.51 E-value=0.81 Score=25.02 Aligned_cols=45 Identities=24% Similarity=0.393 Sum_probs=32.8
Q ss_pred CCCC-CEEEEE--CCCHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHHH
Q ss_conf 9888-779997--78878999999999779981899-9449899999997
Q gi|254781039|r 1 MKNY-STIFVI--GAGAFGTALSSVIASRGLANVTL-LGRKEILMQQLED 46 (329)
Q Consensus 1 M~~~-~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l-~~r~~~~~~~i~~ 46 (329)
|+|. .|+++| |++-+|.++|..|++.| .+|.+ |.|+++..+...+
T Consensus 1 m~~~~~KvalVTGa~~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~~ 49 (252)
T PRK06947 1 MTNSDRKVVLITGASRGIGRATAVLAAARG-WSVGINYARDAAAAEETAD 49 (252)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHH
T ss_conf 999999089993883589999999999879-9899980898789999999
No 409
>PRK09291 short chain dehydrogenase; Provisional
Probab=91.51 E-value=0.72 Score=25.35 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=33.5
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 77999778-87899999999977998189994498999999977
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
+++.|-|+ .-.|-++|..|++.| ++|.+.+|+.+..+.+.+.
T Consensus 3 K~vLITGAssGIGraiA~~la~~G-~~Vi~~~r~~~~l~~l~~~ 45 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG-HRVIAGVQIAPQVTELRAE 45 (257)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 989996898589999999999879-9899996878999999999
No 410
>PRK13748 putative mercuric reductase; Provisional
Probab=91.46 E-value=0.87 Score=24.81 Aligned_cols=178 Identities=16% Similarity=0.189 Sum_probs=90.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH------------H--H---HHHHHHCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 7799977887899999999977998189994498------------9--9---999997789842279881787438973
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE------------I--L---MQQLEDTRINAKALPGIKLSPLLNFSS 67 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~------------~--~---~~~i~~~~~n~~~lp~i~l~~~i~~t~ 67 (329)
..+.|||+|.=|.+-|...++.| .+|.|..++. . . ++.....+.++ +..++.... ..-
T Consensus 99 yDliVIG~GpaG~~AA~~Aa~~G-~kValVE~~~lGGTClN~GCIPSK~Ll~aA~~~~~~r~~~-~~~Gi~~~~---~~v 173 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQG-ARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESP-FDGGIAATA---PTI 173 (561)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCCC---CEE
T ss_conf 76899895889999999999789-9799994799688665676044899999999999997450-147711677---546
Q ss_pred CHHH-HHHHHHHHCCCCHHHHHHHHHH---------HHHHCCCCCCEEECCCC---------CCCCCCC-----------
Q ss_conf 1687-7555544112217776665555---------33203568505523752---------0002585-----------
Q gi|254781039|r 68 DHTL-LQNADIVLFATSSKGYGEALNF---------YSNWLKESAEIIICSKG---------FEYNSGM----------- 117 (329)
Q Consensus 68 ~~~~-l~~adiIiiavps~~~~~~l~~---------i~~~l~~~~~ii~~sKG---------i~~~t~~----------- 117 (329)
|.+. ...-+-++--+.....+..++. -..+..++...|....| +...||.
T Consensus 174 d~~~~~~~k~~~v~~l~~~~~~~~l~~~~gV~vi~G~A~f~~~~tv~V~~~dg~~~~i~a~~iIIATGS~P~~P~ipGl~ 253 (561)
T PRK13748 174 DRSKLLAQQQARVDELRHAKYEGILEGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLK 253 (561)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEECCCCEEEEEECEEEECCCCCCCCCCCCCCC
T ss_conf 79999999999999987446889974379849998499995398899993589648994186999478876678888767
Q ss_pred -----CCCHHHH-HHHHHCCCEECCCCCHHHHHHHHHH---HH-------CCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf -----4310123-3210012100128881789987653---21-------246773178999999753411138997388
Q gi|254781039|r 118 -----LLSSYSE-KVLPSHSISVLSGPGFARDIAQGLP---VG-------VILSSKNIDISRRLSKILTTDSFRVYCSDD 181 (329)
Q Consensus 118 -----~~se~i~-~~~~~~~~~vlsGPs~A~Eia~~~p---t~-------~~ia~~d~~~~~~i~~~~~~~~~~~~~s~D 181 (329)
+-.++++ +.+| .+++++.|--++-|+++-.- +. -.+...|.+..+.+.+.|...-+++.....
T Consensus 254 ~~~~lTSd~~l~l~~lP-~~l~IIGgG~IG~E~A~~f~~lGs~VTiv~r~~ll~~~D~ei~~~l~~~l~~~GI~i~~~~~ 332 (561)
T PRK13748 254 ETPYWTSTEALASDTIP-ERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQ 332 (561)
T ss_pred CCCEECCHHHHCCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEECCCE
T ss_conf 78627745640744388-73899898689999999998649848999657656764999999999999976979976978
Q ss_pred CCEEEEE
Q ss_conf 6144440
Q gi|254781039|r 182 RIGVQIG 188 (329)
Q Consensus 182 ~~GvE~~ 188 (329)
+..++..
T Consensus 333 v~~v~~~ 339 (561)
T PRK13748 333 ASQVAHD 339 (561)
T ss_pred EEEEEEC
T ss_conf 9999972
No 411
>PRK09134 short chain dehydrogenase; Provisional
Probab=91.43 E-value=0.82 Score=25.00 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHHH
Q ss_conf 98887799977-8878999999999779981899-9449899999997
Q gi|254781039|r 1 MKNYSTIFVIG-AGAFGTALSSVIASRGLANVTL-LGRKEILMQQLED 46 (329)
Q Consensus 1 M~~~~kI~ViG-aGa~GtAlA~~La~~g~~~V~l-~~r~~~~~~~i~~ 46 (329)
|...+.+.|-| ++-.|.|+|..|++.| .+|.+ +.++++..+.+.+
T Consensus 6 ~~~~KvalVTGas~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~~~~ 52 (256)
T PRK09134 6 MAAPRAALVTGAARRIGRAIALDLAAHG-FDVAVHYNRSRDEAEALAA 52 (256)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHH
T ss_conf 9999979994886789999999999879-9899984999899999999
No 412
>PRK06181 short chain dehydrogenase; Provisional
Probab=91.43 E-value=0.63 Score=25.72 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=31.9
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 799977-887899999999977998189994498999999977
Q gi|254781039|r 6 TIFVIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 6 kI~ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
.+.|-| +.-.|.|+|..|++.| .+|.+++|+++..+++.++
T Consensus 3 v~lITGassGIG~a~A~~la~~G-a~vvl~~r~~~~l~~~~~~ 44 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAG-ARLVLAARNEERLASLAQE 44 (263)
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 99995810199999999999879-9899998899999999999
No 413
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=91.41 E-value=0.4 Score=27.00 Aligned_cols=34 Identities=29% Similarity=0.606 Sum_probs=29.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9888779997788789999999997799818999449
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
|.+ .|.|||+|--|.++|..|+..|. +|.++.|.
T Consensus 1 mrt--~V~IVGaGP~GL~LA~lLar~GI-~~vVlEr~ 34 (392)
T PRK08243 1 MRT--QVAIIGAGPAGLLLGQLLHLAGI-DSVVLERR 34 (392)
T ss_pred CCC--CEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
T ss_conf 998--89999977999999999997799-88999768
No 414
>PRK06123 short chain dehydrogenase; Provisional
Probab=91.38 E-value=0.75 Score=25.25 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=30.1
Q ss_pred CCCCCEEEEE--CCCHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHHH
Q ss_conf 9888779997--78878999999999779981899-9449899999997
Q gi|254781039|r 1 MKNYSTIFVI--GAGAFGTALSSVIASRGLANVTL-LGRKEILMQQLED 46 (329)
Q Consensus 1 M~~~~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l-~~r~~~~~~~i~~ 46 (329)
|. +||++| |++-.|.++|..|++.|. +|.+ |.++++..+...+
T Consensus 1 m~--nKvalITGas~GIG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~ 46 (249)
T PRK06123 1 MM--RKVMIITGASRGIGAATALLAAERGY-AVCLNYLRNRDAAEAVVQ 46 (249)
T ss_pred CC--CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHH
T ss_conf 99--98899968687999999999998799-899980898789999999
No 415
>PRK06184 hypothetical protein; Provisional
Probab=91.37 E-value=0.45 Score=26.68 Aligned_cols=37 Identities=30% Similarity=0.653 Sum_probs=30.8
Q ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 9888--7799977887899999999977998189994498
Q gi|254781039|r 1 MKNY--STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 1 M~~~--~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|+.. .-|.|+|+|--|.++|..|++.| .+|.+..+++
T Consensus 1 m~~~~tTDVlIVGaGPvGL~lA~~La~~G-i~v~viEr~~ 39 (503)
T PRK06184 1 MTEYTTTDVLIVGAGPTGLTLAIELARRG-VSFRLIEKSP 39 (503)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC
T ss_conf 99888579899990999999999999779-9899994899
No 416
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=91.31 E-value=0.4 Score=27.04 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=29.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 877999778878999999999779981899944989
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
|-.+.|+|||-.|+.+|..+++.| +.|.+..+++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~g-k~VLIvekR~H 35 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLG-KRVLIVEKRNH 35 (374)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCC
T ss_conf 975899877626889999999759-87999962566
No 417
>PRK05650 short chain dehydrogenase; Provisional
Probab=91.31 E-value=0.79 Score=25.09 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=33.7
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 779997788-7899999999977998189994498999999977
Q gi|254781039|r 5 STIFVIGAG-AFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~ViGaG-a~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
+||.|-|++ -.|.|+|..|++.| ++|.+.+|+++..++..+.
T Consensus 1 ~rVlITGassGIG~alA~~la~~G-~~V~l~~r~~~~l~~~~~~ 43 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG-WRLALADVNEEGGEETLKE 43 (270)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 979998876499999999999889-9899997988999999999
No 418
>PRK07608 hypothetical protein; Provisional
Probab=91.30 E-value=0.39 Score=27.11 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=28.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 779997788789999999997799818999449
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
.-|.|+|+|--|.++|..|++.| .+|.++.+.
T Consensus 6 ~DV~IvGaGp~Gl~lA~~La~~G-~~v~viE~~ 37 (389)
T PRK07608 6 FDVAVVGGGLVGKSLALALAQSG-LRVALLEAQ 37 (389)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 98899990689999999998379-988999589
No 419
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.28 E-value=0.9 Score=24.71 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=38.5
Q ss_pred CCCEECCCCCHHHHHHHHHH---HHC-------CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEE
Q ss_conf 12100128881789987653---212-------4677317899999975341113899738861444
Q gi|254781039|r 130 HSISVLSGPGFARDIAQGLP---VGV-------ILSSKNIDISRRLSKILTTDSFRVYCSDDRIGVQ 186 (329)
Q Consensus 130 ~~~~vlsGPs~A~Eia~~~p---t~~-------~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE 186 (329)
.+++++.|--++-|+|.=-- +.+ .+...|.+.++.+.+.|...-+++..+..+..+|
T Consensus 223 ~~lvIIGgG~IG~E~A~if~~lGs~VTi~~r~~~L~~~D~di~~~l~~~l~~~GV~i~~~~~v~~v~ 289 (541)
T PTZ00052 223 GKTLVVGASYVALECAGFLNSLGFDVTVAVRSIVLRGFDRQCAEKVKEYMEEQGVKFKVGVLPKKLE 289 (541)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEECCEEEEEEE
T ss_conf 6289989869999999999975985899953776756577799999999985074997454899999
No 420
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.28 E-value=0.21 Score=28.80 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=31.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 8779997788789999999997799818999449899
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL 40 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~ 40 (329)
++||+|+|-|.=|.+.|..|.+.| ++|++|+.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCC-CEEEEECCCCCC
T ss_conf 997999926651099999999779-869998389876
No 421
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.26 E-value=0.62 Score=25.78 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=71.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
+|+.|+|.|.-|.++|..|..-| .+|++.+|+++....+...+..+. .+.+..+.+.++|+||-.||+
T Consensus 153 s~~lVlG~Gr~G~~lA~~l~~lG-A~V~V~aR~~~~~a~a~~~G~~~v-----------~~~~L~~~~~~~D~i~NTIPa 220 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALG-AKVKVGARKSAHLARITEMGYSPV-----------HLSELAEEVGEADIIFNTIPA 220 (296)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCCEEE-----------EHHHHHHHHCCCCEEEECCCH
T ss_conf 65899898689999999999779-969999799999999997698587-----------199999773569999989852
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 776665555332035685055237
Q gi|254781039|r 85 KGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 85 ~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
.-+. +++...+++++.||.++
T Consensus 221 ~Vlt---~~~l~~~~~~avIIDLA 241 (296)
T PRK08306 221 LVLT---KNVLSKMPPHALIIDLA 241 (296)
T ss_pred HHCC---HHHHHCCCCCCEEEEEC
T ss_conf 5439---99994189996999947
No 422
>PRK07814 short chain dehydrogenase; Provisional
Probab=91.22 E-value=0.73 Score=25.31 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=32.8
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 779997--7887899999999977998189994498999999977
Q gi|254781039|r 5 STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
.|+++| |++-.|.++|..|++.| .+|.+.+|+++..+...++
T Consensus 10 gKvalITGgs~GIG~aia~~la~~G-a~V~i~~~~~~~l~~~~~~ 53 (263)
T PRK07814 10 GQVAVVTGAGRGLGAAIALAFAEAG-ADVLIAARTESQLDEVAEQ 53 (263)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 9989995896689999999999879-9899996989999999999
No 423
>PRK07774 short chain dehydrogenase; Provisional
Probab=91.21 E-value=0.91 Score=24.70 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=31.8
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 779997--788789999999997799818999449899999997
Q gi|254781039|r 5 STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
.|+++| |++-.|.++|..|++.| .+|.+++|+++..+...+
T Consensus 6 gK~alVTGgs~GiG~aia~~la~~G-a~V~i~~~~~~~~~~~~~ 48 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREG-ASVVVADINAEGAERVAK 48 (250)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 9889997976889999999999869-999999798899999999
No 424
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ; InterPro: IPR012802 Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle, which plays a minor role in aerobic beta-oxidation of fatty acids. The FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC), and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is the Escherichia coli FadJ protein (also named YfcX) (P77399 from SWISSPROT). This entry excludes FadB of IPR012799 from INTERPRO.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0051287 NAD binding, 0006635 fatty acid beta-oxidation, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=91.18 E-value=0.15 Score=29.81 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=69.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH--------HHHHHHHCCCCCCCCCCCCCCC---CEEEEECHHH
Q ss_conf 8877999778878999999999779981899944989--------9999997789842279881787---4389731687
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI--------LMQQLEDTRINAKALPGIKLSP---LLNFSSDHTL 71 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~--------~~~~i~~~~~n~~~lp~i~l~~---~i~~t~~~~~ 71 (329)
+.++++|+|+|-||=-||.+=+-+-.-.|++-+.|++ ..+.+.+ +...+.+..-...+ .|..+++..-
T Consensus 306 ~~~~vgvLGGGLMGGGIa~VTatkAg~PvRiKDIn~~Gi~~AL~Y~~~~L~k-~vkrr~~~~~e~~~~m~li~g~T~y~G 384 (732)
T TIGR02440 306 KIKKVGVLGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDK-KVKRRHMKPAERDNQMALITGTTDYRG 384 (732)
T ss_pred CCCEEEEECCCCCCCCCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHCCCEEEEECCCCCCC
T ss_conf 3343367347645663011322027884488634965676898785987268-400001564563241354333632122
Q ss_pred HHHHHHHHCCCCH--HHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 7555544112217--776665555332035685055237520
Q gi|254781039|r 72 LQNADIVLFATSS--KGYGEALNFYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 72 l~~adiIiiavps--~~~~~~l~~i~~~l~~~~~ii~~sKGi 111 (329)
+.+.|+||-||=- .-=.+.+++|...-...+++-|-|--+
T Consensus 385 f~~~D~vvEAVFEdl~LK~QMV~diE~~~~~hTIFASNTSSL 426 (732)
T TIGR02440 385 FKDVDIVVEAVFEDLELKHQMVKDIERECAAHTIFASNTSSL 426 (732)
T ss_pred EECCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 001446998760350212337899961567703553144468
No 425
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.17 E-value=0.96 Score=24.54 Aligned_cols=42 Identities=33% Similarity=0.527 Sum_probs=32.5
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 779997--7887899999999977998189994498999999977
Q gi|254781039|r 5 STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
.|+++| |++-+|.++|..|++.| .+|.+.+|+++..+...++
T Consensus 7 gKvalITGas~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~~ 50 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARG-ARVALIGRGAAPLSQTLPG 50 (239)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 8989994725489999999999879-9899997987789999987
No 426
>PRK07190 hypothetical protein; Provisional
Probab=91.10 E-value=0.41 Score=26.92 Aligned_cols=37 Identities=19% Similarity=0.451 Sum_probs=31.3
Q ss_pred CCC-CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 988-87799977887899999999977998189994498
Q gi|254781039|r 1 MKN-YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 1 M~~-~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|+. |.-|.|+|+|--|.++|..|+..|. +|.+..+++
T Consensus 1 m~~~~tDVlIVGaGPvGL~lA~~La~~Gv-~v~VlEr~~ 38 (480)
T PRK07190 1 MSAQVADVVIVGAGPVGLMCAYLGQRCGI-NTVIVDKSD 38 (480)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCC
T ss_conf 99886448999938899999999988799-999996999
No 427
>PRK06949 short chain dehydrogenase; Provisional
Probab=91.06 E-value=0.83 Score=24.95 Aligned_cols=41 Identities=27% Similarity=0.488 Sum_probs=31.2
Q ss_pred CEEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 7799977887-89999999997799818999449899999997
Q gi|254781039|r 5 STIFVIGAGA-FGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~ViGaGa-~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
+.+.|-|++. +|.++|..|++.| .+|.+.+|+.+..+...+
T Consensus 10 KvalVTGas~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~~~ 51 (258)
T PRK06949 10 KVALVTGASSGLGQRFAQVLSQAG-AKVVLASRRVERLKELRA 51 (258)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989995857799999999999879-999999698899999999
No 428
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=91.04 E-value=0.51 Score=26.34 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=29.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 88779997788789999999997799818999449
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
+=+||+|||+|.=|.+=|..+++.| ++|.++.+.
T Consensus 16 ~gkkV~IIGaGPaGlsAA~~aa~~G-~~v~viEk~ 49 (350)
T PRK12770 16 TGKKVAIIGAGPAGLAAAGYLACLG-HEVHVYDKL 49 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEEEC
T ss_conf 9798999995588999999999789-985999536
No 429
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.01 E-value=1 Score=24.41 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=31.0
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 779997--788789999999997799818999449899999997
Q gi|254781039|r 5 STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
.|+++| |++-.|.++|..|++.| .+|.+.+|+++..++..+
T Consensus 7 ~KvalVTGgs~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~ 49 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG-ATVAFNDGLAAEARELAA 49 (250)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 9879995836689999999999879-999999698899999999
No 430
>KOG0029 consensus
Probab=91.00 E-value=0.47 Score=26.57 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=27.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 87799977887899999999977998189994
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLG 35 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~ 35 (329)
.++|.|||||-=|.+-|..|.++| ++|.++.
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G-~~V~VLE 45 (501)
T KOG0029 15 KKKVIVIGAGLAGLSAARQLQDFG-FDVLVLE 45 (501)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 883899898578999999999759-8259997
No 431
>PRK07825 short chain dehydrogenase; Provisional
Probab=90.99 E-value=0.79 Score=25.09 Aligned_cols=83 Identities=19% Similarity=0.162 Sum_probs=49.8
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 7799977-887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 5 STIFVIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
+.+.|-| ++-.|.|+|..|++.| .+|.+++|+++..+...++..+..+ .. +| ...
T Consensus 6 KvvlITGassGIG~a~A~~la~~G-a~V~i~~r~~~~l~~~~~~~~~~~~-----------~~--------~D----Vtd 61 (273)
T PRK07825 6 KVIAITGGARGIGLATARALAALG-AKVAIGDLDEALAKESAAELGLVVG-----------GP--------LD----VTD 61 (273)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCEE-----------EE--------CC----CCC
T ss_conf 889992623399999999999879-9899997999999999986078559-----------99--------14----799
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 77766655553320356850552375200
Q gi|254781039|r 84 SKGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 84 s~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
...++.+++++...+.+-..+|+. -|+.
T Consensus 62 ~~~v~~~~~~~~~~~G~iDiLVNN-AGi~ 89 (273)
T PRK07825 62 PASFAAFLDAVEADLGPIDVLVNN-AGIM 89 (273)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEC-CCCC
T ss_conf 999999999999970997789987-8778
No 432
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=90.96 E-value=0.56 Score=26.06 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=29.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 988877999778878999999999779981899944989
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
|++ +|+|||+|-=|.-|.+.|-+.|...|.|=-++.+
T Consensus 1 MkT--qVaIiG~GPsGLLLGQLLh~~GId~viLEr~~~d 37 (393)
T TIGR02360 1 MKT--QVAIIGAGPSGLLLGQLLHKAGIDTVILERKSRD 37 (393)
T ss_pred CCE--EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHH
T ss_conf 951--7999757735789999998669858997235722
No 433
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=90.92 E-value=0.4 Score=27.02 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=33.0
Q ss_pred CCCCCEEEEECCCHHHHH-----HHHHHHHCCCCEEEEEECCHHH
Q ss_conf 988877999778878999-----9999997799818999449899
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTA-----LSSVIASRGLANVTLLGRKEIL 40 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtA-----lA~~La~~g~~~V~l~~r~~~~ 40 (329)
|++|++|+|+|=|-.|-. |+..|++.| ++|...+-|+..
T Consensus 1 m~~mr~IAiYGKGGIGKSTtssNlsAAlA~~G-~rVl~IGCDPK~ 44 (293)
T PRK13234 1 MSALRQIAFYGKGGIGKSTTSQNTLAALVEMG-QKILIVGCDPKA 44 (293)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCCC
T ss_conf 98775799977984458778999999999779-969997489831
No 434
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=90.89 E-value=0.27 Score=28.13 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=29.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 7799977887899999999977998189994498
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
++|+|||+|.-|.+.|..|+..| |+|+++.+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G-~~Vtv~e~~~ 156 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAG-HDVTVFERVA 156 (457)
T ss_pred CEEEEECCCCHHHHCHHHHHHCC-CEEEECCCCC
T ss_conf 67999888951555889998689-8799826667
No 435
>PRK06153 hypothetical protein; Provisional
Probab=90.86 E-value=0.27 Score=28.10 Aligned_cols=108 Identities=18% Similarity=0.307 Sum_probs=61.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH------------HHHHHHCCCCCCCCC--------CCCCCCCEE
Q ss_conf 779997788789999999997799818999449899------------999997789842279--------881787438
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL------------MQQLEDTRINAKALP--------GIKLSPLLN 64 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~------------~~~i~~~~~n~~~lp--------~i~l~~~i~ 64 (329)
.+|+|||.|--|+-+--.+++.-..++.|++-|.-. .+.+........||. ++. +....
T Consensus 177 ~~IAIIGLGGTGsYILD~vAKTPV~EIhLFDgD~f~~HNAFRaPGA~s~eel~~~~~KVdy~~~~Y~~mh~gIv-~h~~~ 255 (393)
T PRK06153 177 EKVAIIGLGGTGAYILDLVAKTPVAEIHLFDGDDFLQHNAFRSPGAPSLEELRNAPKKVDYFKQRYANMHRGIV-SHPYY 255 (393)
T ss_pred CEEEEEECCCCCHHHHHHHHCCCHHHEECCCCCHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCC-CCCEE
T ss_conf 75999955875122222421462652430255213221322489988878875131478999999999867842-46237
Q ss_pred EEE-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CCCCCEEECCCCCCCCCC
Q ss_conf 973-1687755554411221777666555533203-568505523752000258
Q gi|254781039|r 65 FSS-DHTLLQNADIVLFATSSKGYGEALNFYSNWL-KESAEIIICSKGFEYNSG 116 (329)
Q Consensus 65 ~t~-~~~~l~~adiIiiavps~~~~~~l~~i~~~l-~~~~~ii~~sKGi~~~t~ 116 (329)
++. +.+.+.+.|++|+|+-...-+.. |..+| ..+.++|.+-=|++...+
T Consensus 256 i~~~nv~~L~g~~FvFvcvD~G~~r~~---I~~~L~~~gIpFiDvGmGl~~~~~ 306 (393)
T PRK06153 256 IDEDNVDELDGVTFVFVCVDKGSSRKV---IFDYLEALGIPFIDVGMGLELVNG 306 (393)
T ss_pred ECCCHHHHHCCCCEEEEEECCCCHHHH---HHHHHHHCCCCEEECCCCEEEECC
T ss_conf 632025564397189999448804789---999999839986872666265368
No 436
>PRK03612 spermidine synthase; Provisional
Probab=90.76 E-value=1.3 Score=23.66 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=52.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE-EC-HHHHH----HHH
Q ss_conf 8877999778878999999999779981899944989999999778984227988178743897-31-68775----555
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS-SD-HTLLQ----NAD 76 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t-~~-~~~l~----~ad 76 (329)
+.+++.|||+|-.++ +--.|...+..+|.+...|++.++--++...-+..-.+.--.+.+++. .| ..-++ .-|
T Consensus 293 ~p~~VLiiGGGdG~a-~revLk~~~ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~~~~~yD 371 (516)
T PRK03612 293 RARRVLILGGGDGLA-LREVLKYPDVEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLPETFD 371 (516)
T ss_pred CCCEEEEECCCCCHH-HHHHHCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCC
T ss_conf 977389983776087-9998648996637899518899999985721444412323499648985378999986888788
Q ss_pred HHHCCCCHH--------HHHHHHHHHHHHCCCCCCEE
Q ss_conf 441122177--------76665555332035685055
Q gi|254781039|r 77 IVLFATSSK--------GYGEALNFYSNWLKESAEII 105 (329)
Q Consensus 77 iIiiavps~--------~~~~~l~~i~~~l~~~~~ii 105 (329)
+||+=.|-. +-+++.+.++..++++-.++
T Consensus 372 vIi~D~pdP~~~~~~~LYs~eFY~~~~~~L~~~G~~v 408 (516)
T PRK03612 372 AIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLV 408 (516)
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 8998189979952246753999999998449995899
No 437
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.71 E-value=0.87 Score=24.81 Aligned_cols=41 Identities=29% Similarity=0.488 Sum_probs=31.7
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 77999778-8789999999997799818999449899999997
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
+.+.|-|+ .-.|.++|..|++.| .+|.+++|+++..+...+
T Consensus 7 KvalITGas~GIG~aiA~~la~~G-a~V~l~~r~~~~l~~~~~ 48 (238)
T PRK07666 7 KNALITGAGRGIGRAVAIALAKEG-VNVGLLARSEENLKAVAK 48 (238)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989991637789999999999879-989999899999999999
No 438
>PRK12937 short chain dehydrogenase; Provisional
Probab=90.62 E-value=0.92 Score=24.65 Aligned_cols=45 Identities=16% Similarity=0.351 Sum_probs=33.6
Q ss_pred CCCCCEEEEE--CCCHHHHHHHHHHHHCCCCEEEEE-ECCHHHHHHHHH
Q ss_conf 9888779997--788789999999997799818999-449899999997
Q gi|254781039|r 1 MKNYSTIFVI--GAGAFGTALSSVIASRGLANVTLL-GRKEILMQQLED 46 (329)
Q Consensus 1 M~~~~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~-~r~~~~~~~i~~ 46 (329)
|+...|+++| |++-.|.++|..|++.| .+|.+. .++++..+.+.+
T Consensus 1 M~~sgK~alVTGgs~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~~ 48 (245)
T PRK12937 1 MTDSNKVAIVTGASRGIGAAIARRLAADG-FAVAVNYAGSAAMADELVE 48 (245)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHH
T ss_conf 99999889994857789999999999879-9999976998689999999
No 439
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=90.57 E-value=0.35 Score=27.43 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=28.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 7799977887899999999977998189994498
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
++|.|+|+|+=|.=+|.-|+... .+|++-.|+.
T Consensus 184 KrVlVVG~GnSg~DIA~els~~a-~~V~ls~R~g 216 (532)
T pfam00743 184 KRVLVIGLGNSGGDIAVELSRTA-AQVFLSTRTG 216 (532)
T ss_pred CEEEEECCCCCCCHHHHHHHHHC-CEEEEEEECC
T ss_conf 74999788898410599998527-8689997068
No 440
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=90.57 E-value=0.9 Score=24.73 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=31.2
Q ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 79997--788789999999997799818999449899999997
Q gi|254781039|r 6 TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 6 kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|+++| |++-.|.++|..|++.| .+|.+++|+++..++..+
T Consensus 15 K~alITGgs~GIG~~ia~~la~~G-a~V~i~~r~~~~~~~~~~ 56 (259)
T PRK06124 15 QVALVTGSARGLGLEIARALAEAG-AHVLVNGRNAARVEAAVA 56 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989992867489999999999879-999999698899999999
No 441
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=90.52 E-value=0.55 Score=26.11 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=36.6
Q ss_pred CCCEECCCCCHHHHHHHHHH-----HHCC------CC-CCHHHHHHHHHHHHCCCCEEEEECCCCCEEE
Q ss_conf 12100128881789987653-----2124------67-7317899999975341113899738861444
Q gi|254781039|r 130 HSISVLSGPGFARDIAQGLP-----VGVI------LS-SKNIDISRRLSKILTTDSFRVYCSDDRIGVQ 186 (329)
Q Consensus 130 ~~~~vlsGPs~A~Eia~~~p-----t~~~------ia-~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE 186 (329)
.+++++.|--.+-|+|.-.- ..++ +. .-|.+.++.+.+.|....+++...+-+..++
T Consensus 150 k~vvViGgG~ig~E~A~~l~~~G~~Vtiv~~~~~~l~~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 218 (443)
T PRK09564 150 KRIVIIGAGFIGLEVVEAAKKLGKNVRIIQLEKRILPDSFDKEITDVMEEELREKGVELHTSEFVKSLI 218 (443)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEE
T ss_conf 659999970999999999986698899999578345566789999999999997797999899899999
No 442
>PRK08324 short chain dehydrogenase; Validated
Probab=90.49 E-value=0.81 Score=25.01 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=20.6
Q ss_pred CCEECCCCC------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 210012888------17899876532124677317899999975341
Q gi|254781039|r 131 SISVLSGPG------FARDIAQGLPVGVILSSKNIDISRRLSKILTT 171 (329)
Q Consensus 131 ~~~vlsGPs------~A~Eia~~~pt~~~ia~~d~~~~~~i~~~~~~ 171 (329)
++++++|.+ .|..+++.- ..++++..|.+-.+.+++.++.
T Consensus 422 KVALVTGga~GIG~A~A~~fa~eG-A~Vvl~D~~~~~l~~~a~el~~ 467 (676)
T PRK08324 422 KVALVTGAAGGIGLATAKRLAAEG-ACVVLADIDEEAAEAAAAELGG 467 (676)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHC
T ss_conf 879994798816299999999879-9899995888999999999707
No 443
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=90.48 E-value=0.48 Score=26.51 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=33.8
Q ss_pred HHHCCCEECCCCCHHHHHHHHHH-----HH------CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEE
Q ss_conf 10012100128881789987653-----21------24677317899999975341113899738861444
Q gi|254781039|r 127 LPSHSISVLSGPGFARDIAQGLP-----VG------VILSSKNIDISRRLSKILTTDSFRVYCSDDRIGVQ 186 (329)
Q Consensus 127 ~~~~~~~vlsGPs~A~Eia~~~p-----t~------~~ia~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE 186 (329)
+| .+++++.|--++-|+|.-.- .. -.+...|.+.++.+.+++... +.++....+..++
T Consensus 168 lP-~~l~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~~lL~~~D~~i~~~l~~~~~~~-~~i~~~~~v~~~~ 236 (452)
T TIGR03452 168 LP-ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKKK-WDIRLGRNVTAVE 236 (452)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCC-EEEEECCEEEEEE
T ss_conf 58-669998886899999999996199499999676223334889999999997568-2999323899999
No 444
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=90.40 E-value=1.2 Score=23.83 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=32.8
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 779997--7887899999999977998189994498999999977
Q gi|254781039|r 5 STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
.|+++| |++..|.++|..|++.| .+|.+++|+++..+...++
T Consensus 11 gKvalVTGas~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~~ 54 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDE 54 (255)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 9989995887789999999999879-9999996988999999999
No 445
>PRK06940 short chain dehydrogenase; Provisional
Probab=90.39 E-value=1 Score=24.29 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=31.2
Q ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 779997-788789999999997799818999449899999997
Q gi|254781039|r 5 STIFVI-GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~Vi-GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
+||.|+ |+|-.|.|+|..|+ .| .+|.+.+|+++..+...+
T Consensus 5 ~kV~v~tGa~GIG~aiA~~la-~G-a~vvi~~~~~~~l~~~~~ 45 (277)
T PRK06940 5 KEVVVVIGAGGMGQAIARRVG-SG-KTVLLADYNEENLQAVAR 45 (277)
T ss_pred CCEEEECCCCHHHHHHHHHHH-HC-CEEEEEECCHHHHHHHHH
T ss_conf 929999781699999999998-19-989999898899999999
No 446
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.38 E-value=1.4 Score=23.44 Aligned_cols=175 Identities=17% Similarity=0.180 Sum_probs=86.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH--------------------HHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 98887799977887899999999977998189994498--------------------9999999778984227988178
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE--------------------ILMQQLEDTRINAKALPGIKLS 60 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~--------------------~~~~~i~~~~~n~~~lp~i~l~ 60 (329)
|.+..-+.|||+|.=|.+-|..+++.| .+|.+..++. +..+.+++.. ..+ ++ .
T Consensus 1 M~~~YDviVIG~GpaG~~aA~~aa~~G-~kv~iiE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~--~~~--gi--~ 73 (467)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLG-LKTAVVEPKYWGGVCLNVGCIPSKALLRNAELAHIFTKEA--KTF--GI--S 73 (467)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH--HHC--CC--C
T ss_conf 985687899997889999999999789-9099994899687506176011399999999999999788--867--97--7
Q ss_pred CCEEEEECH-HHHHHHHHHHCCCCHHHHHHHHHHH--------HHHCCCCCCEEECCCC---------CCCCCCCC----
Q ss_conf 743897316-8775555441122177766655553--------3203568505523752---------00025854----
Q gi|254781039|r 61 PLLNFSSDH-TLLQNADIVLFATSSKGYGEALNFY--------SNWLKESAEIIICSKG---------FEYNSGML---- 118 (329)
Q Consensus 61 ~~i~~t~~~-~~l~~adiIiiavps~~~~~~l~~i--------~~~l~~~~~ii~~sKG---------i~~~t~~~---- 118 (329)
..+ .-+. ...+..+-++--. ...++..++.- ..+..++...+....| +...||..
T Consensus 74 ~~~--~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~~~~~~i~a~~iiIATGs~p~~l 150 (467)
T PRK07818 74 GEV--TFDYGAAFDRSRKVAEGR-VAGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL 150 (467)
T ss_pred CCC--CCCHHHHHHHHHHHHHHH-HHHHHHHHHHCCEEEEECEEEEECCCEEEEECCCCCEEEEEEEEEEECCCCCCCCC
T ss_conf 424--168999999999999998-75699999867939994307982485138971789627999526898768876657
Q ss_pred -----------CCHHH-HHHHHHCCCEECCCCCHHHHHHHHHH---HHC--------CCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf -----------31012-33210012100128881789987653---212--------46773178999999753411138
Q gi|254781039|r 119 -----------LSSYS-EKVLPSHSISVLSGPGFARDIAQGLP---VGV--------ILSSKNIDISRRLSKILTTDSFR 175 (329)
Q Consensus 119 -----------~se~i-~~~~~~~~~~vlsGPs~A~Eia~~~p---t~~--------~ia~~d~~~~~~i~~~~~~~~~~ 175 (329)
.++.+ .+.+|. ++.++.|-..|-|.|.-.- +.+ .+...|.+.++.+.+.|...-++
T Consensus 151 Pg~~~~~~~~~~~~~~~~~~lPk-~v~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~~~~l~~~d~~~~~~l~~~l~~~Gi~ 229 (467)
T PRK07818 151 PGTSLSENVVTYEEQILSRELPK-SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIEKQYKKLGVK 229 (467)
T ss_pred CCCCCCCCEEEEHHHHCCCCCCC-EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 88678887785357723345896-69999987999999999983298777762113135442267899999999866988
Q ss_pred EEECCCCCEEE
Q ss_conf 99738861444
Q gi|254781039|r 176 VYCSDDRIGVQ 186 (329)
Q Consensus 176 ~~~s~D~~GvE 186 (329)
++.+..+..++
T Consensus 230 i~~~~~v~~i~ 240 (467)
T PRK07818 230 ILTGTKVESIR 240 (467)
T ss_pred EECCCEEEEEE
T ss_conf 85597689999
No 447
>PRK06834 hypothetical protein; Provisional
Probab=90.38 E-value=0.59 Score=25.92 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=30.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9888779997788789999999997799818999449
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
|+.. .|.|+|+|--|.++|..|++.|. +|.++.+.
T Consensus 1 M~~~-dVlIVGaGPvGL~lA~~La~~Gi-~v~viE~~ 35 (488)
T PRK06834 1 MTEH-AVVIAGGGPTGLMLAGELALAGV-DVAIVERR 35 (488)
T ss_pred CCCC-CEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
T ss_conf 9989-89998938899999999997699-99999689
No 448
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=90.37 E-value=0.59 Score=25.92 Aligned_cols=31 Identities=35% Similarity=0.625 Sum_probs=28.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 79997788789999999997799818999449
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
-|.|||+|.-|+++|.-|+..|. +|.|..++
T Consensus 7 DVvIIGgGi~Ga~iArdla~rGl-~v~LvEk~ 37 (545)
T PRK11101 7 DVIIIGGGATGAGIARDCALRGL-RCILVERH 37 (545)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
T ss_conf 68999986899999999986799-39999899
No 449
>PRK04965 nitric oxide reductase; Provisional
Probab=90.34 E-value=0.39 Score=27.07 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=28.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCH
Q ss_conf 9888779997788789999999997799-8189994498
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKE 38 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~ 38 (329)
|+ .+|.|||+|.=|...|..|.+.+. .+|++++.++
T Consensus 1 M~--~~IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~ 37 (378)
T PRK04965 1 MS--NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (378)
T ss_pred CC--CCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 98--99999988299999999997119498699998999
No 450
>PRK07063 short chain dehydrogenase; Provisional
Probab=90.28 E-value=1.2 Score=23.85 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=32.1
Q ss_pred CCCC-CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 9888-779997--78878999999999779981899944989999999
Q gi|254781039|r 1 MKNY-STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLE 45 (329)
Q Consensus 1 M~~~-~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~ 45 (329)
|+++ .|+++| |++-.|.++|..|++.| .+|.+.+|+++..++..
T Consensus 2 m~rL~gKvalVTGa~~GIG~aiA~~~a~~G-a~V~i~~~~~~~~~~~~ 48 (259)
T PRK07063 2 MNRLAGKVALVTGAAQGIGAAIARAFVREG-AAVALADLDAALAERAA 48 (259)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH
T ss_conf 753599889995878789999999999879-98999979878999999
No 451
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.28 E-value=0.94 Score=24.60 Aligned_cols=41 Identities=32% Similarity=0.537 Sum_probs=31.6
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 77999778-8789999999997799818999449899999997
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
+.+.|-|+ .-.|.++|..|++.| .+|.+++|+++..+.+.+
T Consensus 41 KvaLITGassGIG~aiA~~la~~G-a~Vvl~~R~~~~l~~~~~ 82 (290)
T PRK05866 41 KRILLTGASSGIGEAAAEKFARRG-ATVVAVARRKDLLDAVAD 82 (290)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989990813099999999999869-989999899999999999
No 452
>TIGR01724 hmd_rel coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase-related protein; InterPro: IPR010063 This entry identifies a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase, (IPR010062 from INTERPRO). All members are restricted to archaeal methanogens and their function is unknown..
Probab=90.26 E-value=1 Score=24.42 Aligned_cols=188 Identities=18% Similarity=0.157 Sum_probs=110.7
Q ss_pred EEEEECCCH--------------------HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEE
Q ss_conf 799977887--------------------899999999977998189994498999999977898422798817874389
Q gi|254781039|r 6 TIFVIGAGA--------------------FGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65 (329)
Q Consensus 6 kI~ViGaGa--------------------~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~ 65 (329)
||+|+|+|+ -|+.+|.-++..| |+|.|-..+.+.++.=.-.. +. ...+++
T Consensus 2 k~~~yGaGnq~ly~~~l~~Pe~~GGe~PyGG~~ma~efa~aG-hdv~l~eP~~~~~~d~~W~~--------ve-~aGv~v 71 (341)
T TIGR01724 2 KVSVYGAGNQKLYLEKLNLPEKFGGEPPYGGSRMAIEFAKAG-HDVVLAEPNREVLSDDLWKK--------VE-DAGVKV 71 (341)
T ss_pred EEEEEECCCHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHH--------HH-HCCCEE
T ss_conf 578871662256565413742227999986048899887428-70686077612311467777--------87-516645
Q ss_pred -EECHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHH----------HHCCCE
Q ss_conf -731687755554411221777-66655553320356850552375200025854310123321----------001210
Q gi|254781039|r 66 -SSDHTLLQNADIVLFATSSKG-YGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVL----------PSHSIS 133 (329)
Q Consensus 66 -t~~~~~l~~adiIiiavps~~-~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~----------~~~~~~ 133 (329)
.+|.++.+.+++-++-+|-.. .-.+.+.|.+++.++..+.+.|- +.+. . +...++..+ .-+|-+
T Consensus 72 ~~~d~eaa~~~e~~vlftPfG~~t~~ia~~i~~~~Pe~~~i~ntCt-~~~~--v-ly~~le~~l~~~r~dvG~ssmhP~~ 147 (341)
T TIGR01724 72 VSDDVEAAKHGEIHVLFTPFGKATLSIAKTIIEHVPENAVICNTCT-VSPV--V-LYYSLEKILRLKRKDVGISSMHPAA 147 (341)
T ss_pred EEHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEECCCC-CCHH--H-HHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 3013543301755788635317899999999974686536620243-3336--8-8888788874322103200135667
Q ss_pred ECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEE--EEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCC
Q ss_conf 012888178998765321246773178999999753411138--9973886144440002567788997521100380
Q gi|254781039|r 134 VLSGPGFARDIAQGLPVGVILSSKNIDISRRLSKILTTDSFR--VYCSDDRIGVQIGGALKNVIAIASGILKGRGCGD 209 (329)
Q Consensus 134 vlsGPs~A~Eia~~~pt~~~ia~~d~~~~~~i~~~~~~~~~~--~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~ 209 (329)
+=.-|..-.=+..|+++.-.=-..+. ..++..++..+.--. +.+.|=.--|.=.|+|-..+|+ .|++|=+..|.
T Consensus 148 vPGtP~~~~y~i~G~~~~~~~~at~~-q~~~~~el~~s~Gk~~y~~Padv~~~vadmG~lvtaval-~Gvldyy~vG~ 223 (341)
T TIGR01724 148 VPGTPQHGHYVIGGKATEGKELATEE-QIKKLVELAKSVGKKAYVVPADVSSAVADMGSLVTAVAL-AGVLDYYRVGT 223 (341)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHH-HHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 88988765267505420012212589-999999999841874301032036788655689999999-98888889889
No 453
>PRK05884 short chain dehydrogenase; Provisional
Probab=90.26 E-value=1.3 Score=23.63 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=34.2
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 7799977-887899999999977998189994498999999977
Q gi|254781039|r 5 STIFVIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
+||.|-| ++-.|.|+|..|++.| .+|.+.+|+++..+...++
T Consensus 1 ~~VlVTGgs~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~e 43 (223)
T PRK05884 1 MEVLVTGGDTDLGRTIAEGFRNDG-HKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 939998788799999999999879-9999995987899999853
No 454
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=90.25 E-value=1.5 Score=23.37 Aligned_cols=166 Identities=18% Similarity=0.253 Sum_probs=76.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHH---HH--H
Q ss_conf 9888779997788789999999997799-8189994498999999977898422798817874389731687---75--5
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTL---LQ--N 74 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~---l~--~ 74 (329)
|...+||.|||+|.=-.|||+.|++... .+|....=|.-..+. ...+ +..+.+++.... .+ +
T Consensus 1 m~~~MkVLviGsGGREHAia~kl~~S~~v~~v~~aPGN~G~~~~--------~~~~----~~~i~~~d~~~i~~fa~~~~ 68 (426)
T PRK13789 1 MQVKLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDD--------ELLP----ADSFSILDKSSVQSFLKSNP 68 (426)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--------CCCC----CCCCCCCCHHHHHHHHHHCC
T ss_conf 96798899989888999999999619898879998897611234--------5454----44338669999999999849
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC---------CCC----------CCCCCCCCCHH--HHHHHHH--CC
Q ss_conf 5544112217776665555332035685055237---------520----------00258543101--2332100--12
Q gi|254781039|r 75 ADIVLFATSSKGYGEALNFYSNWLKESAEIIICS---------KGF----------EYNSGMLLSSY--SEKVLPS--HS 131 (329)
Q Consensus 75 adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s---------KGi----------~~~t~~~~se~--i~~~~~~--~~ 131 (329)
.|++|++=-..-..-+.+.+.. .+.+++=-+ |-| -.......++. ..+.+.. .+
T Consensus 69 idLvvvGPE~PL~~Gi~D~l~~---~gi~vfGP~k~aA~LE~SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~P 145 (426)
T PRK13789 69 FDLIVVGPEDPLVAGFADWAAE---LGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLP 145 (426)
T ss_pred CCEEEECCCHHHHHHHHHHHHH---CCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCC
T ss_conf 9999989668886317999841---6991689598995051269899999997299976015736899999999857998
Q ss_pred CEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCE-----EEEECCCCCEEEEE
Q ss_conf 1001288817899876532124677317899999975341113-----89973886144440
Q gi|254781039|r 132 ISVLSGPGFARDIAQGLPVGVILSSKNIDISRRLSKILTTDSF-----RVYCSDDRIGVQIG 188 (329)
Q Consensus 132 ~~vlsGPs~A~Eia~~~pt~~~ia~~d~~~~~~i~~~~~~~~~-----~~~~s~D~~GvE~~ 188 (329)
+ |+- |+.+|.|+ .++++....+..+.+.++|....| ++..-+=+.|.|+.
T Consensus 146 ~-VIK----aDGLAaGK--GV~V~~~~~eA~~al~~i~~~~~fg~ag~~VvIEE~L~G~E~S 200 (426)
T PRK13789 146 I-VIK----ADGLAAGK--GVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEGQEAS 200 (426)
T ss_pred E-EEE----CCCCCCCC--CEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEE
T ss_conf 8-996----78768999--6695399999999999975442330358759999745898447
No 455
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=90.25 E-value=1.2 Score=24.01 Aligned_cols=40 Identities=28% Similarity=0.564 Sum_probs=33.1
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 99977-887899999999977998189994498999999977
Q gi|254781039|r 7 IFVIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 7 I~ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
+.|-| ++-.|.++|..|+++| .+|.+.+|+++..+.+.++
T Consensus 3 vlVTGassGIG~a~A~~la~~G-a~Vv~~~r~~~~l~~l~~~ 43 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQNG-HKVIATGRRQERLQELKDE 43 (248)
T ss_pred EEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 9998886699999999999879-9999998999999999998
No 456
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=90.23 E-value=0.41 Score=26.92 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=30.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHH
Q ss_conf 8779997788789999999997799-81899944989999
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQ 42 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~ 42 (329)
+..+.|||+|-||.++|..|++-.- .+|.++-+......
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~ 42 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42 (429)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 3229998973898999999997388965999970576533
No 457
>PRK07035 short chain dehydrogenase; Provisional
Probab=90.23 E-value=1.3 Score=23.65 Aligned_cols=40 Identities=35% Similarity=0.449 Sum_probs=30.1
Q ss_pred EEE-EECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 799-9778-8789999999997799818999449899999997
Q gi|254781039|r 6 TIF-VIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 6 kI~-ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|++ |-|+ +-.|.++|..|++.| .+|.+.+|+.+..+.+.+
T Consensus 9 KvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~ 50 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQG-AHVIVSSRKLDGCQAVAD 50 (252)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989995887499999999999879-989999798899999999
No 458
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=90.21 E-value=0.53 Score=26.19 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=30.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 77999778878999999999779981899944989
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
++|+|+|+|-=|.+-|..|++.| ++|++|-+...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g-~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAG-YDVTLYEARDR 34 (485)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 92899746278889999998689-85399842676
No 459
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.21 E-value=1.2 Score=24.00 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=30.5
Q ss_pred CCCCCEEE-EE-CCCHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHHH
Q ss_conf 98887799-97-78878999999999779981899-9449899999997
Q gi|254781039|r 1 MKNYSTIF-VI-GAGAFGTALSSVIASRGLANVTL-LGRKEILMQQLED 46 (329)
Q Consensus 1 M~~~~kI~-Vi-GaGa~GtAlA~~La~~g~~~V~l-~~r~~~~~~~i~~ 46 (329)
|.=..|++ |. |++-+|.++|..|+++| .+|.+ +.++++..+...+
T Consensus 1 m~L~gK~vlITGgs~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~ 48 (247)
T PRK05565 1 MKLMGKVAIVTGASGGIGRAIAELLAKEG-AKVVIAYDKNEEAANELLE 48 (247)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHH
T ss_conf 99899889993784589999999999879-9899981799899999999
No 460
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=90.19 E-value=0.65 Score=25.63 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=29.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCH
Q ss_conf 779997788789999999997799-8189994498
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKE 38 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~ 38 (329)
++|.|||+|-=|.+-|..|++.|. ++|+++..++
T Consensus 1 K~V~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~ 35 (452)
T PRK11883 1 KRVAIIGGGISGLTAAYRLHKKGPDADITLLEASD 35 (452)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 95999998789999999999649799789998899
No 461
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=90.17 E-value=1 Score=24.34 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=31.5
Q ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 79997--788789999999997799818999449899999997
Q gi|254781039|r 6 TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 6 kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|+++| |++-.|.++|..|++.| .+|.+.+|+++..+...+
T Consensus 13 KvalVTG~s~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~ 54 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAG-ARVVLSARKAEELEEAAA 54 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989994877689999999999869-999999798899999999
No 462
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=90.07 E-value=0.6 Score=25.85 Aligned_cols=89 Identities=24% Similarity=0.267 Sum_probs=53.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHH---HHHHHHHH
Q ss_conf 77999778878999999999779981-89994498999999977898422798817874389731-687---75555441
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLAN-VTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTL---LQNADIVL 79 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~-V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~---l~~adiIi 79 (329)
-|++|||+|+.||=|-.-+-+..+-+ +.+.+||++- +.+.+-+. .|++ +++. .+. ..+.|++|
T Consensus 2 ~~vAIiGsGnIGtDLm~Ki~rS~~le~~~~vG~dp~S-~GL~rA~~-----lGv~------~s~~Gid~ll~~~~idiVF 69 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPES-DGLARARE-----LGVK------TSAEGVDGLLANPDIDIVF 69 (285)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-HHHHHHHH-----CCCC------CCCCCHHHHHHCCCCCEEE
T ss_conf 3699989983389999998667872169998248898-28999998-----4996------6376889896099978899
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 12217776665555332035685055237
Q gi|254781039|r 80 FATSSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 80 iavps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
=|++...+..-.+.+++. ++.+|.+|
T Consensus 70 DATSA~aH~~h~~~l~~~---g~~~IDLT 95 (285)
T TIGR03215 70 DATSAKAHARHARLLAEL---GKIVIDLT 95 (285)
T ss_pred ECCCHHHHHHHHHHHHHC---CCEEEECC
T ss_conf 669846799999999975---99799788
No 463
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.05 E-value=1.5 Score=23.27 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=35.9
Q ss_pred CCCC-CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 9888-779997--7887899999999977998189994498999999977
Q gi|254781039|r 1 MKNY-STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 1 M~~~-~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|.+. .|+++| |++-+|.++|..|++.| .+|.+.+|+++..+.+.++
T Consensus 1 M~~L~gKvalVTGgs~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~~ 49 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVAAG-ACVAILDIDADNGAAVAAS 49 (261)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 989999989994877689999999999879-9899997988999999998
No 464
>PRK12829 short chain dehydrogenase; Provisional
Probab=90.03 E-value=1.4 Score=23.39 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=33.8
Q ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 79997--7887899999999977998189994498999999977
Q gi|254781039|r 6 TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 6 kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|+++| |++-.|.|+|..|++.| .+|.+.+|+++..+...++
T Consensus 12 KvalVTGgs~GIG~aiA~~la~~G-a~V~i~~r~~~~~~~~~~~ 54 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAG-ARVHVCDVSEAALAATAAR 54 (264)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 979994737689999999999879-9899997998999999997
No 465
>TIGR02992 ectoine_eutC ectoine utilization protein EutC; InterPro: IPR014334 Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine). Members belong to the ornithine cyclodeaminase/mu-crystallin family..
Probab=90.02 E-value=0.13 Score=30.27 Aligned_cols=89 Identities=20% Similarity=0.360 Sum_probs=58.4
Q ss_pred CEEEEECCCHHHHH--HHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHCC
Q ss_conf 77999778878999--99999977998189994498999999977898422798817874389731-6877555544112
Q gi|254781039|r 5 STIFVIGAGAFGTA--LSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD-HTLLQNADIVLFA 81 (329)
Q Consensus 5 ~kI~ViGaGa~GtA--lA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~-~~~l~~adiIiia 81 (329)
+.++|+|||-=.-- =|-.|.+. ..++++|.||.++++++-..= ..+| |+. +.+.+| .+++..+||||=+
T Consensus 130 s~~a~~GAG~QArLQL~AL~LvRd-I~~ariWAR~~akAe~~A~~L-~~~~--G~~----v~a~td~~~A~~~ADI~vTt 201 (326)
T TIGR02992 130 SVVAILGAGMQARLQLEALTLVRD-IRSARIWARDSAKAEALALQL-SSEL--GID----VTAATDVRAALSGADIIVTT 201 (326)
T ss_pred HHHHHHCCCHHHHHHHHHHHHCCC-HHHHHHHCCCHHHHHHHHHHH-HHHC--CEE----EEECCCHHHHCCCCCEEEEC
T ss_conf 577675255678999999863152-144321025567899999998-8746--906----87504768623668879874
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 217776665555332035685055
Q gi|254781039|r 82 TSSKGYGEALNFYSNWLKESAEII 105 (329)
Q Consensus 82 vps~~~~~~l~~i~~~l~~~~~ii 105 (329)
+||.. -++ ...||.+++.|+
T Consensus 202 TP~~~--Pvl--~a~wL~pGqh~t 221 (326)
T TIGR02992 202 TPSET--PVL--KAEWLEPGQHVT 221 (326)
T ss_pred CCCCC--CCH--HHHHCCCCCEEE
T ss_conf 87987--302--073367887898
No 466
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=89.99 E-value=1.1 Score=24.09 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=32.4
Q ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 79997--7887899999999977998189994498999999977
Q gi|254781039|r 6 TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 6 kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|+++| |++-.|.++|..|++.| .+|.+.+|+++..+...+.
T Consensus 10 K~alVTG~s~GIG~aiA~~la~~G-a~Vvi~~r~~~~l~~~~~~ 52 (251)
T PRK07523 10 RRALITGSSQGIGYALAKGLAQAG-AEVILNGRDAAKLAAAAES 52 (251)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 989995836699999999999879-9999996998999999998
No 467
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.95 E-value=0.57 Score=26.02 Aligned_cols=33 Identities=27% Similarity=0.560 Sum_probs=28.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 7799977887899999999977998189994498
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
.-|.|+|+|--|.++|..|++.| .+|.++.+.+
T Consensus 3 ~DV~IvGaGpvGl~lAl~L~~~G-~~v~lie~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALEGSG-LEVLLVDGGP 35 (405)
T ss_pred CCEEEECCCHHHHHHHHHHHCCC-CCEEEEECCC
T ss_conf 88999990599999999996189-9789995899
No 468
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=89.88 E-value=0.52 Score=26.28 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=33.1
Q ss_pred HHHCCCEECCCCCHHHHHHHHHH---HHC--------CCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 10012100128881789987653---212--------46773178999999753411138997388
Q gi|254781039|r 127 LPSHSISVLSGPGFARDIAQGLP---VGV--------ILSSKNIDISRRLSKILTTDSFRVYCSDD 181 (329)
Q Consensus 127 ~~~~~~~vlsGPs~A~Eia~~~p---t~~--------~ia~~d~~~~~~i~~~~~~~~~~~~~s~D 181 (329)
+| .+++++.|.-.+-|+|.-.. +.+ .+...|.+..+.+.+++... +.++....
T Consensus 167 lP-~~~~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~D~~~~~~l~~~~~~~-i~i~~~~~ 230 (453)
T PRK07846 167 LP-ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSDRLLRHCDDTISERFTEIAGKK-WDLRLGRN 230 (453)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCC-EEEEECCE
T ss_conf 88-649998997579999999995299268997465324434789999999998648-59995768
No 469
>PRK08219 short chain dehydrogenase; Provisional
Probab=89.88 E-value=1.2 Score=24.02 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=32.5
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 8877999778-87899999999977998189994498999999977
Q gi|254781039|r 3 NYSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 3 ~~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
+|+.+.|-|+ +-.|.|+|..|++.+ .|.+.+|+++..+.+.+.
T Consensus 2 ~mKvalITGas~GIG~aia~~la~~g--~vv~~~r~~~~l~~l~~~ 45 (226)
T PRK08219 2 GMPTALITGASRGIGAAIARALARTH--TLLLAGRPSERLDAVAAR 45 (226)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHH
T ss_conf 78999992846499999999999699--899998988999999997
No 470
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.87 E-value=0.66 Score=25.59 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=56.0
Q ss_pred CEEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 7799977887-899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 5 STIFVIGAGA-FGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViGaGa-~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
++++|+|-+. .|--+|..|..++ ..|++..+.. .+..+.+++||++|.|+.
T Consensus 45 k~vvViGrS~iVG~Pla~lL~~~~-atVt~chs~T---------------------------~~l~~~~~~ADIvIsA~G 96 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHSKT---------------------------KNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC-CEEEEECCCC---------------------------CCHHHHHHHCCEEEEECC
T ss_conf 569998787300899999998489-9799976898---------------------------897997410453554158
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCC----CCCCCCCCHH
Q ss_conf 77766655553320356850552375200----0258543101
Q gi|254781039|r 84 SKGYGEALNFYSNWLKESAEIIICSKGFE----YNSGMLLSSY 122 (329)
Q Consensus 84 s~~~~~~l~~i~~~l~~~~~ii~~sKGi~----~~t~~~~se~ 122 (329)
...+ ++ ..++++++.+|.+ |+. .+.+++.-|+
T Consensus 97 ~~~l---i~--~~~vk~gavvIDv--Gin~~~~~~~~kl~GDv 132 (168)
T cd01080 97 KPGL---VK--GDMVKPGAVVIDV--GINRVPDKSGGKLVGDV 132 (168)
T ss_pred CCCC---CC--HHHCCCCCEEEEC--CCCCCCCCCCCEEECCC
T ss_conf 7663---78--9995899889966--65423348898463778
No 471
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.82 E-value=0.6 Score=25.85 Aligned_cols=36 Identities=39% Similarity=0.653 Sum_probs=31.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 98887799977887899999999977998189994498
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~ 38 (329)
|+++ -+.|||+|.=|.+-|..+++.| .+|.++.+++
T Consensus 1 M~~Y-DviIIGaGpaG~~AA~~aa~~G-~kV~liE~~~ 36 (438)
T PRK07251 1 MLTY-DLIVIGFGKAGKTLAAKLASAG-KKVALVERSK 36 (438)
T ss_pred CCCC-CEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
T ss_conf 9955-8799997889999999999788-9499994699
No 472
>PRK07109 short chain dehydrogenase; Provisional
Probab=89.79 E-value=1.4 Score=23.48 Aligned_cols=40 Identities=35% Similarity=0.511 Sum_probs=30.9
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 7999778-8789999999997799818999449899999997
Q gi|254781039|r 6 TIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 6 kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
.|.|-|+ +-.|-++|..|+++| .+|.+.+|+++..+.+.+
T Consensus 10 vVvITGASsGIGra~A~~fA~~G-a~Vvl~aR~~~~L~~~a~ 50 (338)
T PRK07109 10 VVVITGASAGVGRATARAFARRG-AKVVLLARGEEGLEGLAA 50 (338)
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 89994843499999999999879-989999899999999999
No 473
>PRK09242 tropinone reductase; Provisional
Probab=89.78 E-value=1.2 Score=24.03 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=31.0
Q ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 779997-788789999999997799818999449899999997
Q gi|254781039|r 5 STIFVI-GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~Vi-GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
+++.|- |++.+|.++|..|++.| .+|.+.+|+++..+...+
T Consensus 11 K~alITGgs~GIG~a~a~~la~~G-a~V~~~~r~~~~~~~~~~ 52 (258)
T PRK09242 11 QTALITGASKGIGLAIARELLGLG-ADVLIVARDADALAQARD 52 (258)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 999994848689999999999879-989999698899999999
No 474
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=89.73 E-value=1.6 Score=23.10 Aligned_cols=134 Identities=18% Similarity=0.291 Sum_probs=71.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC--C-CCCEEEE-EC-HHHHHH--
Q ss_conf 888779997788789999999997799818999449899999997789842279881--7-8743897-31-687755--
Q gi|254781039|r 2 KNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIK--L-SPLLNFS-SD-HTLLQN-- 74 (329)
Q Consensus 2 ~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~--l-~~~i~~t-~~-~~~l~~-- 74 (329)
.+.++|.|||+|-.|++= -.|...+..+|.+...|+++++..++. +|.+. + .+.++.. .| .+-+++
T Consensus 74 ~~pk~VLIiGGGDG~~~r-Evlk~~~v~~v~~VEiD~~Vv~~~~~~------lp~~~~~~~dprv~l~~~Dg~~~l~~~~ 146 (240)
T pfam01564 74 PNPKKVLIIGGGDGGALR-EVVKHPSVEKITLVEIDEKVIEFSKKF------LPSLAGGFDDPRVKVVIGDGFKFLKDYL 146 (240)
T ss_pred CCCCEEEEECCCCHHHHH-HHHCCCCCCEEEEECCCHHHHHHHHHH------HHHHCCCCCCCCEEEEEHHHHHHHHHCC
T ss_conf 885536764586579999-985679953899975788999999998------7985243479855999816899998572
Q ss_pred --HHHHHCCCC-----H--HHHHHHHHHHHHHCCCCCCEEECCCCC--CCCCCCCCCHHHHHHHHHCCCEECCCCCHHH
Q ss_conf --554411221-----7--776665555332035685055237520--0025854310123321001210012888178
Q gi|254781039|r 75 --ADIVLFATS-----S--KGYGEALNFYSNWLKESAEIIICSKGF--EYNSGMLLSSYSEKVLPSHSISVLSGPGFAR 142 (329)
Q Consensus 75 --adiIiiavp-----s--~~~~~~l~~i~~~l~~~~~ii~~sKGi--~~~t~~~~se~i~~~~~~~~~~vlsGPs~A~ 142 (329)
-|+||+-.| + -+-+++.+.++..|+++-.++.=+.-. .+.....+...+++.++.-......=|+|..
T Consensus 147 ~~yDvII~D~~DP~~~~~~Lfs~eFy~~~~~~L~~~Gi~v~Q~~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~vPsy~~ 225 (240)
T pfam01564 147 VKFDVIIVDSTDPVGPAENLFSKEFYDLLKRALKEDGVFVTQAESPWLHLELIINILKNGKKVFPVVMPYVVPVPTYPS 225 (240)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 5445899958997653344422999999998659997899924883437999999999999778982699867466897
No 475
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=89.70 E-value=1.6 Score=23.09 Aligned_cols=88 Identities=20% Similarity=0.313 Sum_probs=56.1
Q ss_pred CCCC-CEEEEECCC-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHH
Q ss_conf 9888-779997788-78999999999779981899944989999999778984227988178743897316877555544
Q gi|254781039|r 1 MKNY-STIFVIGAG-AFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIV 78 (329)
Q Consensus 1 M~~~-~kI~ViGaG-a~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiI 78 (329)
|+.. ..|.|-|++ -.|.+||+.+.+-| ++|.+.+|+++..++..... | ++ .....|.
T Consensus 1 mk~tgnTiLITGG~sGIGl~lak~f~elg-N~VIi~gR~e~~L~e~~~~~--p----~~-----~t~v~Dv--------- 59 (245)
T COG3967 1 MKTTGNTILITGGASGIGLALAKRFLELG-NTVIICGRNEERLAEAKAEN--P----EI-----HTEVCDV--------- 59 (245)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHC-CEEEEECCCHHHHHHHHHCC--C----CH-----HEEEECC---------
T ss_conf 96447679993796436599999999838-97999657499999998609--4----13-----1565132---------
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 11221777666555533203568505523752000
Q gi|254781039|r 79 LFATSSKGYGEALNFYSNWLKESAEIIICSKGFEY 113 (329)
Q Consensus 79 iiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~ 113 (329)
--....+++++.+++.. ++..++.-..||-.
T Consensus 60 ---~d~~~~~~lvewLkk~~-P~lNvliNNAGIqr 90 (245)
T COG3967 60 ---ADRDSRRELVEWLKKEY-PNLNVLINNAGIQR 90 (245)
T ss_pred ---CCHHHHHHHHHHHHHHC-CCHHEEEECCCCCC
T ss_conf ---03566999999998629-86113430300032
No 476
>PRK09330 cell division protein FtsZ; Validated
Probab=89.66 E-value=1.6 Score=23.07 Aligned_cols=61 Identities=25% Similarity=0.253 Sum_probs=41.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEE
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~ 65 (329)
..+|-|+|-|--|.=.-..+.+.|.+.|.++.-|.+. +.+.+.....|.+=|-++...+=+
T Consensus 12 ~a~IkViGvGG~G~Navn~m~~~~i~gv~fia~NTD~-q~L~~s~a~~ki~lG~~~T~GlGA 72 (387)
T PRK09330 12 GAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDA-QALLKSKAPVKIQLGEKLTRGLGA 72 (387)
T ss_pred CCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHH-HHHHCCCCCCEEEECCCCCCCCCC
T ss_conf 9728999668863899999998599870799982609-998459998259707775688888
No 477
>PRK06139 short chain dehydrogenase; Provisional
Probab=89.64 E-value=1.3 Score=23.61 Aligned_cols=46 Identities=24% Similarity=0.443 Sum_probs=33.7
Q ss_pred CCCC-CEEE-EEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 9888-7799-977-887899999999977998189994498999999977
Q gi|254781039|r 1 MKNY-STIF-VIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 1 M~~~-~kI~-ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|... .|+. |-| ++-.|-++|..|++.| .+|.+.+|+++..+.+.++
T Consensus 1 Mg~L~gKvvlITGASsGIG~aiA~~~A~~G-a~Vvl~~R~~~~L~~~a~e 49 (324)
T PRK06139 1 MGPLHGAVVVITGASSGIGRATAEAFARRG-ARLVLAARDEEALFEVAEE 49 (324)
T ss_pred CCCCCCCEEEEECHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 998599779993825499999999999879-9899998999999999999
No 478
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=89.62 E-value=0.37 Score=27.24 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=33.0
Q ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHC
Q ss_conf 9888779997-7887899999999977-998189994498999999977
Q gi|254781039|r 1 MKNYSTIFVI-GAGAFGTALSSVIASR-GLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 1 M~~~~kI~Vi-GaGa~GtAlA~~La~~-g~~~V~l~~r~~~~~~~i~~~ 47 (329)
|-+-++|.|- |+|..|+.++..|.++ ..+.+.++.|++.....+++.
T Consensus 1 ~~~~K~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~ 49 (324)
T TIGR03589 1 MFNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQK 49 (324)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 9993999990797799999999999729982899966864032889851
No 479
>KOG0068 consensus
Probab=89.62 E-value=1.3 Score=23.78 Aligned_cols=90 Identities=20% Similarity=0.209 Sum_probs=59.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 77999778878999999999779981899944-98999999977898422798817874389731687755554411221
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGR-KEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r-~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
+.++|+|-|..|+-+|..+---| -.|..|+. .+. +... ...+.+.+..+.+..||+|-+-+|
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~g-m~vI~~dpi~~~--~~~~--------------a~gvq~vsl~Eil~~ADFitlH~P 209 (406)
T KOG0068 147 KTLGVLGLGRIGSEVAVRAKAMG-MHVIGYDPITPM--ALAE--------------AFGVQLVSLEEILPKADFITLHVP 209 (406)
T ss_pred CEEEEEECCCCHHHHHHHHHHCC-CEEEEECCCCCH--HHHH--------------HCCCEEEEHHHHHHHCCEEEECCC
T ss_conf 67888504621189999998658-548860687846--7787--------------516545409887755688998167
Q ss_pred HH-HHHHHHH-HHHHHCCCCCCEEECCCCC
Q ss_conf 77-7666555-5332035685055237520
Q gi|254781039|r 84 SK-GYGEALN-FYSNWLKESAEIIICSKGF 111 (329)
Q Consensus 84 s~-~~~~~l~-~i~~~l~~~~~ii~~sKGi 111 (329)
-. ..+..+. +-....|++..||+++.|=
T Consensus 210 LtP~T~~lin~~tfA~mKkGVriIN~aRGG 239 (406)
T KOG0068 210 LTPSTEKLLNDETFAKMKKGVRIINVARGG 239 (406)
T ss_pred CCCCHHHCCCHHHHHHHHCCCEEEEECCCC
T ss_conf 882143113878999860785899824775
No 480
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=89.56 E-value=1.3 Score=23.77 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=29.8
Q ss_pred CCCCC---EE-EEE-CCCHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 98887---79-997-7887899999999977998189994498999
Q gi|254781039|r 1 MKNYS---TI-FVI-GAGAFGTALSSVIASRGLANVTLLGRKEILM 41 (329)
Q Consensus 1 M~~~~---kI-~Vi-GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~ 41 (329)
|+.|+ |+ .|- |++-.|.++|..|++.| .+|.+.+|+++..
T Consensus 1 m~~~~l~gK~alITG~s~GIG~aia~~la~~G-a~V~~~~r~~~~l 45 (253)
T PRK08220 1 MNSMDFSGKTVWVTGAAQGIGYAVALAFVEAG-AKVIGFDQAFEQL 45 (253)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHH
T ss_conf 99889999989995885689999999999879-9999997887787
No 481
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=89.56 E-value=0.35 Score=27.43 Aligned_cols=77 Identities=26% Similarity=0.256 Sum_probs=47.8
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC
Q ss_conf 877999778-8789999999997799818999449899999997789842279881787438973168775555441122
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFAT 82 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiav 82 (329)
...++|+|+ |..|+++|..|+-++ ....+..|+.+.- + |+-..+|+. .+...+..+.+.+.....++++.|.
T Consensus 167 qatvaivGa~G~Ia~~Iar~la~~~-~~~~ll~r~aea~---~--rq~l~~l~e-~~~~~~i~s~d~~~~~e~i~v~vAs 239 (351)
T COG5322 167 QATVAIVGATGDIASAIARWLAPKV-GVKELLLRDAEAR---N--RQRLTLLQE-ELGRGKIMSLDYALPQEDILVWVAS 239 (351)
T ss_pred HCEEEEECCCCHHHHHHHHHHCCCC-CEEEEECCCHHHH---H--HHHHHHCCC-CCCCCEEEECCCCCCCCCEEEEEEE
T ss_conf 7857872478548999998763466-7799863518764---1--466553201-5688716415410446133999961
Q ss_pred CHHHH
Q ss_conf 17776
Q gi|254781039|r 83 SSKGY 87 (329)
Q Consensus 83 ps~~~ 87 (329)
.+.+.
T Consensus 240 ~~~g~ 244 (351)
T COG5322 240 MPKGV 244 (351)
T ss_pred CCCCC
T ss_conf 69985
No 482
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=89.55 E-value=0.73 Score=25.30 Aligned_cols=39 Identities=18% Similarity=0.418 Sum_probs=32.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 888779997788789999999997799818999449899
Q gi|254781039|r 2 KNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL 40 (329)
Q Consensus 2 ~~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~ 40 (329)
..+.+++|||||-=|.|.|..|.+.|..++.++.++++.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV 44 (443)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 675548998987889999999997599867999705766
No 483
>PRK07576 short chain dehydrogenase; Provisional
Probab=89.54 E-value=1.5 Score=23.35 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=30.0
Q ss_pred EEE-EE-CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 799-97-78878999999999779981899944989999999
Q gi|254781039|r 6 TIF-VI-GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLE 45 (329)
Q Consensus 6 kI~-Vi-GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~ 45 (329)
|++ |- |++-.|.|+|..|++.| .+|.+.+|+++.++...
T Consensus 9 K~alVTGgs~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~ 49 (260)
T PRK07576 9 KNVFVVGGTSGINLGIAQAFARAG-ANVAVASRSQEKVDAAV 49 (260)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH
T ss_conf 989995896199999999999879-99999979889999999
No 484
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=89.53 E-value=1.7 Score=23.01 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=39.7
Q ss_pred CCCEECCCCCHHHHHHHHHH---HHCC--------CCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEE
Q ss_conf 12100128881789987653---2124--------677317899999975341113899738861444
Q gi|254781039|r 130 HSISVLSGPGFARDIAQGLP---VGVI--------LSSKNIDISRRLSKILTTDSFRVYCSDDRIGVQ 186 (329)
Q Consensus 130 ~~~~vlsGPs~A~Eia~~~p---t~~~--------ia~~d~~~~~~i~~~~~~~~~~~~~s~D~~GvE 186 (329)
.+++++.|-..+-|.|.-.- +-++ +...|.+.++.+++.|....++++.+..+..++
T Consensus 179 ~~l~ViGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~L~~~d~~~~~~~~~~l~~~gv~i~~~~~~~~v~ 246 (467)
T PRK07845 179 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAAVLEEVFARRGMTLLKRSRAESVT 246 (467)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEEEEE
T ss_conf 86999898799999999999739879999955744543188899999999997690997288799999
No 485
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=89.51 E-value=0.73 Score=25.32 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=28.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8779997788789999999997799818999449
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
-++++|||+|..|.=+|..|++.| .+|++..+.
T Consensus 148 ~k~vvIIGgG~IGlE~A~~l~~~G-~~Vtlie~~ 180 (438)
T PRK13512 148 VDKVLVVGAGYVSLEVLENLYERG-LHPTLIHRS 180 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEEC
T ss_conf 977999895589999999999729-908999935
No 486
>PRK08374 homoserine dehydrogenase; Provisional
Probab=89.51 E-value=0.53 Score=26.24 Aligned_cols=103 Identities=18% Similarity=0.326 Sum_probs=55.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEE---EEECCHHHHHH-----HHHCCCCCCCCCCCCCCCCEEEE-ECHHHH
Q ss_conf 779997788789999999997799---8189---99449899999-----99778984227988178743897-316877
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGL---ANVT---LLGRKEILMQQ-----LEDTRINAKALPGIKLSPLLNFS-SDHTLL 72 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~---~~V~---l~~r~~~~~~~-----i~~~~~n~~~lp~i~l~~~i~~t-~~~~~l 72 (329)
-||+++|.|..|++++..|.++.. .++. +..|+....+. ......+...+. ..++.-... +..+.+
T Consensus 3 i~I~l~G~G~VG~~~~~~L~~~~~~~g~~l~vv~i~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~ 80 (316)
T PRK08374 3 VKVSLFGFGTVGRALAEILAEKSRVFGVELKVVSITDRSGTVWGDFDLLEAKEVKESTGKLS--NIGDYEVYNFTPEEIV 80 (316)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCC--CCCCHHHCCCCHHHHH
T ss_conf 12999933889999999999718872986599999955676345655566555332025434--4553012048989983
Q ss_pred HH--HHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 55--55441122177766655553320356850552375200
Q gi|254781039|r 73 QN--ADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 73 ~~--adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
.+ .|+++=++++. ...+.++..++.++.+|++-|+..
T Consensus 81 ~~~~~dvvVd~t~~~---~~~~~~~~al~~G~hVVTANK~~l 119 (316)
T PRK08374 81 EEVDPDIVVDVSSWD---EAHEWYLTALKEGKSVVTSNKPPI 119 (316)
T ss_pred CCCCCCEEEECCCCH---HHHHHHHHHHHCCCCEECCCHHHH
T ss_conf 488999899879996---999999999988992997886999
No 487
>PRK06125 short chain dehydrogenase; Provisional
Probab=89.49 E-value=1.6 Score=23.09 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=32.5
Q ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 779997-7887899999999977998189994498999999977
Q gi|254781039|r 5 STIFVI-GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~Vi-GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
+++.|- |++-+|.++|..|++.| .+|.+.+|+++..+...++
T Consensus 8 K~alITG~s~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~~ 50 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEG-CHLVLAARDADALAALAAD 50 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 989996877689999999999879-9899997988999999999
No 488
>PRK06138 short chain dehydrogenase; Provisional
Probab=89.48 E-value=1.6 Score=23.08 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=32.9
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 779997--7887899999999977998189994498999999977
Q gi|254781039|r 5 STIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT 47 (329)
Q Consensus 5 ~kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~ 47 (329)
.|+++| |++-.|.++|..|++.| .+|.+++|+++..+...+.
T Consensus 5 gKvalVTGas~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~~ 48 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREG-ARVVVADRDAEAAERVAAA 48 (252)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
T ss_conf 9889994746799999999999879-9899996887899999999
No 489
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=89.41 E-value=1.7 Score=22.95 Aligned_cols=210 Identities=19% Similarity=0.203 Sum_probs=115.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
.||.|+|-|--|.-....+.+.+...|.++.-|.+. +.+++.+...|.+=|-++.+..=+-.+++.-+
T Consensus 1 ~kIkViGVGG~G~N~vn~m~~~~~~~v~~iaiNTD~-q~L~~~~~~~ki~iG~~~t~GlGaGg~Pe~G~----------- 68 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDA-QALAKSKAPNKIQLGKELTRGLGAGGDPEVGR----------- 68 (304)
T ss_pred CCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCH-HHHHCCCCCCEEEECCCCCCCCCCCCCHHHHH-----------
T ss_conf 946999878812999999998399985599990879-99845999827970876568898888847999-----------
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHH---HHHCCCEECCCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 776665555332035685055237520002585431012332---10012100128881789987653212467731789
Q gi|254781039|r 85 KGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKV---LPSHSISVLSGPGFARDIAQGLPVGVILSSKNIDI 161 (329)
Q Consensus 85 ~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~---~~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~~~ 161 (329)
+..++..++|+..++ +.-++.++-|+--.||.-.+-++.+. .....+++++=|-. .|-.++.-. | .+-
T Consensus 69 ~AA~e~~~~I~~~l~-~~d~vfi~AGmGGGTGTGaaPviA~~Ake~g~LtvavVT~PF~-~EG~~R~~~----A---~~g 139 (304)
T cd02201 69 KAAEESREEIKEALE-GADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEGKKRMRQ----A---EEG 139 (304)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCHH-HHHHHHHHH----H---HHH
T ss_conf 999988999999973-6876999942579866317899999886679859999967857-752899999----9---999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCEEEE-EEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC------CCH
Q ss_conf 99999753411138997388614444-00025677889975211003805789999998999999998722------544
Q gi|254781039|r 162 SRRLSKILTTDSFRVYCSDDRIGVQI-GGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMN------GRA 234 (329)
Q Consensus 162 ~~~i~~~~~~~~~~~~~s~D~~GvE~-~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g------~~~ 234 (329)
.+++++. .+.+.+.+++-+.-.-= --.+++.|+.+- -++.++++-+..+...-| +|.
T Consensus 140 l~~L~~~--~D~~Ivi~NdkL~~~~~~~~~~~~Af~~ad--------------~~l~~~V~~I~~li~~~g~iNlDfaDv 203 (304)
T cd02201 140 LEELRKH--VDTLIVIPNDKLLEVVDKNLPLLEAFKLAD--------------DVLAQAVKGISDLITKPGLINLDFADV 203 (304)
T ss_pred HHHHHHH--CCCEEEEEHHHHHHHHCCCCCHHHHHHHHH--------------HHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 9999985--894599635999976366887899999999--------------999999999999873479767787899
Q ss_pred HHHHHCCCCCEEEEEEEC
Q ss_conf 553200232101577644
Q gi|254781039|r 235 DTILRLSGVGDLILTATS 252 (329)
Q Consensus 235 ~t~~glaG~GDl~~T~~s 252 (329)
.|++.-+|.+- +.+..+
T Consensus 204 ~~vm~~~G~a~-~g~G~a 220 (304)
T cd02201 204 KTVMKNKGVAL-MGIGEA 220 (304)
T ss_pred HHHHCCCCCEE-EEEEEE
T ss_conf 98863898189-999874
No 490
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.39 E-value=1.7 Score=22.94 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=33.4
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 887799977-88789999999997799818999449899999997
Q gi|254781039|r 3 NYSTIFVIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 3 ~~~kI~ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
+-+.+.|-| ++..|.++|..|+++| .+|.+.+|+++..+...+
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~~~~ 46 (258)
T PRK12429 3 KGKTALVTGAASGIGLEIALALAKEG-AKVVIADLNDEAAAKAAE 46 (258)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 95989994887589999999999879-999999798899999999
No 491
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=89.35 E-value=0.61 Score=25.84 Aligned_cols=37 Identities=22% Similarity=0.514 Sum_probs=30.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCH
Q ss_conf 98887799977887899999999977998-189994498
Q gi|254781039|r 1 MKNYSTIFVIGAGAFGTALSSVIASRGLA-NVTLLGRKE 38 (329)
Q Consensus 1 M~~~~kI~ViGaGa~GtAlA~~La~~g~~-~V~l~~r~~ 38 (329)
|+. ++|.|||+|.=|...|..|.+.+.. +|++++.++
T Consensus 1 M~~-~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~ 38 (400)
T PRK09754 1 MKE-KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (400)
T ss_pred CCC-CEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 996-72999977599999999998069499799998999
No 492
>PRK08177 short chain dehydrogenase; Provisional
Probab=89.34 E-value=1.3 Score=23.66 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=32.9
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 77999778-8789999999997799818999449899999997
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
+++.|-|+ .-.|.++|..|++.| .+|.+.+|+++..+.++.
T Consensus 2 K~~lITGas~GIG~aia~~l~~~G-~~V~~~~R~~~~~~~~~~ 43 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERG-WQVTATVRGPQQDTALQA 43 (225)
T ss_pred CEEEECCCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989992734299999999999886-999999798877899872
No 493
>PRK05875 short chain dehydrogenase; Provisional
Probab=89.34 E-value=1.6 Score=23.02 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=30.5
Q ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 779997-78878999999999779981899944989999999
Q gi|254781039|r 5 STIFVI-GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLE 45 (329)
Q Consensus 5 ~kI~Vi-GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~ 45 (329)
+.+.|- |++-.|.|+|..|++.| .+|.+.+|+++..+...
T Consensus 8 K~alVTGas~GIG~aiA~~la~~G-a~Vii~~r~~~~l~~~~ 48 (277)
T PRK05875 8 RTYLVTGGGSGIGKGVAAALVAAG-AAVMIVGRNPDKLAAAA 48 (277)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH
T ss_conf 989994887499999999999879-98999979889999999
No 494
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=89.33 E-value=1.7 Score=22.91 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=113.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf 77999778878999999999779981899944989999999778984227988178743897316877555544112217
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS 84 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps 84 (329)
.||.|+|-|--|+=....+.+.+...|..+..|.+. +.++......|.+=|-++.+..=+-.+++.-+
T Consensus 1 akI~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~-~~L~~~~a~~ki~iG~~~t~G~GaG~~pe~G~----------- 68 (303)
T cd02191 1 AKIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDA-QDLLGLEAENRVLIGQARTKGLGAGANPELGA----------- 68 (303)
T ss_pred CCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCH-HHHHCCCCCCEEECCCCCCCCCCCCCCCHHHH-----------
T ss_conf 918999878813999999998299971799995769-99835999828972766668898988945899-----------
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHH---HHCCCEECCCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 7766655553320356850552375200025854310123321---0012100128881789987653212467731789
Q gi|254781039|r 85 KGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVL---PSHSISVLSGPGFARDIAQGLPVGVILSSKNIDI 161 (329)
Q Consensus 85 ~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~---~~~~~~vlsGPs~A~Eia~~~pt~~~ia~~d~~~ 161 (329)
+..++..++|...++ +.-++.++-|+--.||.-.+-++.+.. ....+++++=|-. .|--++. ..| .+-
T Consensus 69 ~aA~e~~~~I~~~l~-~~d~vfi~AGmGGGTGtGaaPviA~~Ake~g~ltvavVt~PF~-~EG~~r~----~~A---~~g 139 (303)
T cd02191 69 EAAEEVQEAIDNIPV-HVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFS-DEGGIRM----LNA---AEG 139 (303)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHH----HHH---HHH
T ss_conf 999999999999865-6998999984189700428999999999759938999978725-5119999----999---999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC------CCHH
Q ss_conf 9999975341113899738861444400025677889975211003805789999998999999998722------5445
Q gi|254781039|r 162 SRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMN------GRAD 235 (329)
Q Consensus 162 ~~~i~~~~~~~~~~~~~s~D~~GvE~~galKNv~AIa~Gi~~gl~~g~N~~aal~~~g~~Em~~l~~~~g------~~~~ 235 (329)
.+++++. .+.+.+.+++.+.-+-=--.+++.|+.+- .++.++++-+..+...-| ++..
T Consensus 140 l~~L~~~--~D~~Ivi~Nd~L~~~~~~~~~~~af~~~d--------------~~l~~~i~~I~~~i~~~g~iNvDfaDv~ 203 (303)
T cd02191 140 FQTLVRE--VDNLMVIPNEKLRQIGEKASLEGAFDHAD--------------EVLVRAVGGLFGAIEIEGEINVDFADVK 203 (303)
T ss_pred HHHHHHH--CCEEEEECHHHHHHHCCCCCHHHHHHHHH--------------HHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 9999986--99799960689986526897999999898--------------9999999999999836798654778999
Q ss_pred HHHHCCCCCEEEEEEECCCCCHH
Q ss_conf 53200232101577644775300
Q gi|254781039|r 236 TILRLSGVGDLILTATSEQSRNF 258 (329)
Q Consensus 236 t~~glaG~GDl~~T~~s~~SRN~ 258 (329)
+++.-.|..= +.+..+. +.||
T Consensus 204 ~vl~~~G~a~-iG~G~~~-g~~r 224 (303)
T cd02191 204 NVMDGGGVAM-VGYGSED-VTNR 224 (303)
T ss_pred HHHCCCCEEE-EEEEEEC-CCCH
T ss_conf 9863897399-9986406-8746
No 495
>PRK05867 short chain dehydrogenase; Provisional
Probab=89.26 E-value=1.3 Score=23.64 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=31.1
Q ss_pred EEE-EEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 799-977-88789999999997799818999449899999997
Q gi|254781039|r 6 TIF-VIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 6 kI~-ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|++ |-| ++-.|.++|..|++.| .+|.+.+|+++..+...+
T Consensus 10 KvalVTGas~GIG~aiA~~la~~G-a~V~i~~r~~~~~~~~~~ 51 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAG-AQVAIAARHLDALEKLAD 51 (253)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 989997956599999999999869-999999798899999999
No 496
>PRK06116 glutathione reductase; Validated
Probab=89.26 E-value=0.7 Score=25.45 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=28.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 779997788789999999997799818999449
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRK 37 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~ 37 (329)
+++.|||+|..|.-+|..|++-| .+|++..|.
T Consensus 168 ~~v~IiGgG~ig~E~A~~~~~lG-~~Vtlv~~~ 199 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLHGLG-SETHLFVRG 199 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHHC-CEEEEEEEC
T ss_conf 77999999666999999999609-848999944
No 497
>PRK06841 short chain dehydrogenase; Provisional
Probab=89.23 E-value=1.5 Score=23.24 Aligned_cols=40 Identities=33% Similarity=0.560 Sum_probs=31.4
Q ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 79997--788789999999997799818999449899999997
Q gi|254781039|r 6 TIFVI--GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED 46 (329)
Q Consensus 6 kI~Vi--GaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~ 46 (329)
|+++| |++-.|.|+|..|++.| .+|.+++|+++..+...+
T Consensus 16 KvalVTGas~GIG~aiA~~la~~G-a~V~i~d~~~~~~~~~~~ 57 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKG-ARVALLDRSEDVAEVAAQ 57 (255)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
T ss_conf 999997967789999999999879-999999698789999998
No 498
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=89.22 E-value=0.6 Score=25.89 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=0.0
Q ss_pred CCEEEEECCCHHHHHHHH-HHHHCCCCEEEEEECCHHH
Q ss_conf 877999778878999999-9997799818999449899
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSS-VIASRGLANVTLLGRKEIL 40 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~-~La~~g~~~V~l~~r~~~~ 40 (329)
|-++-|+|||-.|+.+|. .|++-| .+|.+.-++..+
T Consensus 1 ~FdyiivGaGl~G~V~A~r~l~~lg-k~VLvvEkR~hi 37 (390)
T TIGR00031 1 MFDYIIVGAGLSGIVLANRILAQLG-KRVLVVEKRNHI 37 (390)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCC-CEEEEEEECCCC
T ss_conf 9517998663677999999999709-988999730665
No 499
>KOG2614 consensus
Probab=89.20 E-value=0.73 Score=25.32 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=0.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 8877999778878999999999779981899944989
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~ 39 (329)
.+.+|.|+|+|--|.|-|..|.++|. +|.++...++
T Consensus 1 ~~~~VvIvGgGI~Gla~A~~l~r~G~-~v~VlE~~e~ 36 (420)
T KOG2614 1 KEPKVVIVGGGIVGLATALALHRKGI-DVVVLESRED 36 (420)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEEECCC
T ss_conf 99748998883898999999987587-4899862146
No 500
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.05 E-value=1.8 Score=22.78 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=0.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC
Q ss_conf 77999778878999999999779981899944989999999778
Q gi|254781039|r 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTR 48 (329)
Q Consensus 5 ~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~ 48 (329)
.++.|+|+|..|...+..+...|...|...+++++..+..++-+
T Consensus 162 ~~vlV~GaG~vGl~aiq~ak~~Ga~~V~~~d~~~~kl~~a~~lG 205 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLG 205 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC
T ss_conf 86999899838999999999859976999928999999999729
Done!