HHsearch alignment for GI: 254781039 and conserved domain: pfam03447
>pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.
Probab=93.45 E-value=0.17 Score=29.46 Aligned_cols=87 Identities=24% Similarity=0.279 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHCCCC-E---EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECH-HHHH--HHHHHHCCCC
Q ss_conf 7887899999999977998-1---899944989999999778984227988178743897316-8775--5554411221
Q gi|254781039|r 11 GAGAFGTALSSVIASRGLA-N---VTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDH-TLLQ--NADIVLFATS 83 (329)
Q Consensus 11 GaGa~GtAlA~~La~~g~~-~---V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~-~~l~--~adiIiiavp 83 (329)
T Consensus 1 G~G~VG~~v~~~l~~~~~~~~~~l~~v~~r~~~~~~-----~--~~-----~-~~~~~~~~d~~~ll~~~~iDvVVE~~g 67 (116)
T pfam03447 1 GCGAIGSGLLELLLRQQEEIPLELVAVADRDLLSKA-----R--AA-----L-LGDEPVTLDLDDLVADPRPDVVVECAS 67 (116)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCC-----C--CC-----C-CCCCEEECCHHHHHCCCCCCEEEECCC
T ss_conf 987028999999994920356799999847834323-----2--12-----4-666715779999961889989998899
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 777666555533203568505523752000
Q gi|254781039|r 84 SKGYGEALNFYSNWLKESAEIIICSKGFEY 113 (329)
Q Consensus 84 s~~~~~~l~~i~~~l~~~~~ii~~sKGi~~ 113 (329)
T Consensus 68 ~~~~~~---~~~~aL~~GkhVVTaNK~~lA 94 (116)
T pfam03447 68 SEAVAE---YVLKALKAGKHVVTASKGALA 94 (116)
T ss_pred CHHHHH---HHHHHHHCCCEEEEECHHHHC
T ss_conf 489999---999999879989990788967