RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781039|ref|YP_003065452.1| putative glycerol-3-phosphate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(329 letters)
>gnl|CDD|30589 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 329
Score = 302 bits (774), Expect = 1e-82
Identities = 136/331 (41%), Positives = 204/331 (61%), Gaps = 9/331 (2%)
Query: 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLN 64
I VIGAG++GTAL+ V+A G V L GR E ++ ++ +TR N K LPGI L P L
Sbjct: 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLK 60
Query: 65 FSSDHT-LLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYS 123
++D L ADI++ A S+ E L L + A I+ +KG E +G LLS
Sbjct: 61 ATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEII 120
Query: 124 EKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDRI 183
E+ LP + I+VLSGP FA+++AQGLP V+++S + + + ++ + ++ FRVY S D I
Sbjct: 121 EEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVI 180
Query: 184 GVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILRLSGV 243
GV+IGGALKNVIAIA+GI G G GD+A+A ++ +GL+E+ +L A+ + +T + LSG+
Sbjct: 181 GVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSGL 240
Query: 244 GDLILTATSEQSRNFCFGIALGRGEKQNPDQI-----QLVEGAIAVSCVINISKKMGLKL 298
GDLILT TS SRN FG+ LG+G D+ Q+VEG V ++KK+G+++
Sbjct: 241 GDLILTCTSPLSRNRRFGLLLGQGLS--LDEALEEIGQVVEGVRTAKAVYELAKKLGIEM 298
Query: 299 PIFQAISDVMMNHISVDEALSILLNHSSEEQ 329
PI +A+ V+ + EA+ L+ + +
Sbjct: 299 PITEAVYRVLYEGLDPKEAIEELMGRDLKPE 329
>gnl|CDD|37922 KOG2711, KOG2711, KOG2711, Glycerol-3-phosphate
dehydrogenase/dihydroxyacetone 3-phosphate reductase
[Energy production and conversion].
Length = 372
Score = 153 bits (387), Expect = 7e-38
Identities = 87/346 (25%), Positives = 141/346 (40%), Gaps = 28/346 (8%)
Query: 7 IFVIGAGAFGTALSSVIAS------RGLANVTLLGRKEI-------LMQQLEDTRINAKA 53
+ ++G+G +G+A++ ++ V + +E L + + N K
Sbjct: 24 VCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKY 83
Query: 54 LPGIKLSPLLNFSSD-HTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFE 112
LPGIKL + D ++ADI++F + ++K A I KG E
Sbjct: 84 LPGIKLPENVVAVPDLVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVE 143
Query: 113 YNSG----MLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPV-GVILSSKNIDISRRLSK 167
L+S + L SVL G A ++A I + L K
Sbjct: 144 VGEEGPGIRLISQIIHRAL-GIPCSVLMGANIASEVANEKFCETTIGYKDKKEAGILLKK 202
Query: 168 ILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLT 227
+ T FRV +D GV+I GALKNV+AIA+G + G G G++ +A ++ GL E++K
Sbjct: 203 LFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLEMIKFA 262
Query: 228 EAMNG--RADTILRLSGVGDLILTATSEQSRNFCFGIALGRGEKQNPDQI----QLVEGA 281
+ T GV DLI T ++R A + ++ Q ++G
Sbjct: 263 THFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQKLQGP 322
Query: 282 IAVSCVINISKKMGL--KLPIFQAISDVMMNHISVDEALSILLNHS 325
V + +K GL K P+F A+ + + L L NH
Sbjct: 323 ATAKEVYELLQKKGLVEKFPLFTAVYKICYERLPPQALLECLRNHP 368
>gnl|CDD|110228 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate
dehydrogenase N-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyses the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
N-terminal NAD-binding domain.
Length = 159
Score = 126 bits (319), Expect = 8e-30
Identities = 60/157 (38%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLN 64
I V+GAG++GTAL+ V+A G V L GR E L++++ TR N K LPGIKL L
Sbjct: 1 KKIAVLGAGSWGTALAKVLARNG-HEVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLR 59
Query: 65 FSSD-HTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYS 123
++D ++ ADI++ A S+ E L L A ++ +KG E + LLS
Sbjct: 60 ATTDLEEAIKGADIIVLAVPSQALREVLKQLKGLLSPGAILVSLTKGIEPGTLKLLSEII 119
Query: 124 EKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNID 160
E+ LP + I+VLSGP A ++A GLP +++S++
Sbjct: 120 EEELPINPIAVLSGPSHAEEVALGLPTATVVASEDQQ 156
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 41.5 bits (98), Expect = 3e-04
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
+ VIGAG G + +A++G+A +T+ R ++L + A+P
Sbjct: 180 KVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAK-ELGGNAVP---------L 229
Query: 66 SSDHTLLQNADIVLFATSSKGY 87
LL AD+V+ AT + Y
Sbjct: 230 DELLELLNEADVVISATGAPHY 251
>gnl|CDD|30722 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
Length = 414
Score = 41.0 bits (96), Expect = 5e-04
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLL 63
+ VIGAG G ++ +A +G+ +T+ R T A+ L + +
Sbjct: 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------TLERAEELAKKLGAEAV 227
Query: 64 NFSSDHTLLQNADIVLFATSSKGY 87
L AD+V+ +TS+
Sbjct: 228 ALEELLEALAEADVVISSTSAPHP 251
>gnl|CDD|32077 COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].
Length = 307
Score = 39.5 bits (92), Expect = 0.001
Identities = 40/183 (21%), Positives = 64/183 (34%), Gaps = 15/183 (8%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
I ++GAGA G+ L + +A G +VTLL R L + K L
Sbjct: 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLE------ALKKKGLRIEDEGGNFTT 54
Query: 66 SSDHTL----LQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSS 121
L AD+V+ + EAL + L + ++ G + +
Sbjct: 55 PVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKIL 114
Query: 122 YSEKVLP---SHSISVLSGPGFARDIAQGLPVGVILSSKNIDISRRLSKILTTDSFRVYC 178
E VL +H +V GPG G V L ++ + L+++ V
Sbjct: 115 PKETVLGGVTTHG-AVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVEL 173
Query: 179 SDD 181
D
Sbjct: 174 HPD 176
>gnl|CDD|144908 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase.
This family contains both shikimate and quinate
dehydrogenases. Shikimate 5-dehydrogenase catalyses the
conversion of shikimate to 5-dehydroshikimate. This
reaction is part of the shikimate pathway which is
involved in the biosynthesis of aromatic amino acids.
Quinate 5-dehydrogenase catalyses the conversion of
quinate to 5-dehydroquinate. This reaction is part of
the quinate pathway where quinic acid is exploited as a
source of carbon in prokaryotes and microbial
eukaryotes. Both the shikimate and quinate pathways
share two common pathway metabolites 3-dehydroquinate
and dehydroshikimate.
Length = 134
Score = 37.7 bits (88), Expect = 0.005
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALP---GIKLSPL 62
+ +IGAG + + S+G +T+ R T AK L G +
Sbjct: 14 KVLLIGAGEMARLAAKHLLSKGAKKITIANR----------TLEKAKELAEEFGGEEVEA 63
Query: 63 LNFSSDHTLLQNADIVLFATSSKGY 87
L LL ADIV+ ATS+
Sbjct: 64 LPLDELEELLAEADIVISATSAPTP 88
>gnl|CDD|145605 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA. This is a
family of 2-dehydropantoate 2-reductases also known as
ketopantoate reductases, EC:1.1.1.169. The reaction
catalysed by this enzyme is: (R)-pantoate + NADP(+) <=>
2-dehydropantoate + NADPH. AbpA catalyses the NADPH
reduction of ketopantoic acid to pantoic acid in the
alternative pyrimidine biosynthetic (APB) pathway. ApbA
and PanE are allelic. ApbA, the ketopantoate reductase
enzyme is required for the synthesis of thiamine via the
APB biosynthetic pathway.
Length = 150
Score = 33.4 bits (77), Expect = 0.099
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFS 66
I ++GAGA G+ + +A R +VTL+ R ++ + + + + G + P +
Sbjct: 1 IAILGAGAVGSLYGARLA-RAGHDVTLIARGR-HLEAIRENGLRITSPGGERTVPPPVAT 58
Query: 67 SDHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIIC 107
S L AD+V+ A + EAL + L + +++
Sbjct: 59 SASEELGPADLVIVAVKAYQTAEALEDLAPLLGPNTVVLLL 99
>gnl|CDD|32552 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism].
Length = 330
Score = 33.0 bits (75), Expect = 0.11
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 2 KNYSTIFVIGAGAFG-TALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLS 60
K+ ST+ +IGAGA T L ++ A R + + + R + E + G +
Sbjct: 128 KDASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDP---EAAEAFAARLRKRGGEAVG 184
Query: 61 PLLNFSSDHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEII 105
S ++ ADIV+ AT S E + + WLK I
Sbjct: 185 AA---DSAEEAVEGADIVVTATPST---EPV-LKAEWLKPGTHIN 222
>gnl|CDD|111613 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding
domain. This family also includes lambda crystallin.
Length = 180
Score = 32.5 bits (75), Expect = 0.15
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRK----EILMQQLEDTRINAKALPGIKLSP 61
+ VIGAG G ++ V A GL V L+ E ++E + +
Sbjct: 1 KVAVIGAGTMGAGIAQVFARAGL-EVVLVDISEEALEKARARIEKSLARLVEKGRLTEED 59
Query: 62 ------LLNFSSDHTLLQNADIV 78
++F++D +AD+V
Sbjct: 60 VDAVLARISFTTDLADAVDADLV 82
>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of
Shikimate dehydrogenase. Shikimate dehydrogenase (DH)
is an amino acid DH family member. Shikimate pathway
links metabolism of carbohydrates to de novo
biosynthesis of aromatic amino acids, quinones and
folate. It is essential in plants, bacteria, and fungi
but absent in mammals, thus making enzymes involved in
this pathway ideal targets for broad spectrum
antibiotics and herbicides. Shikimate DH catalyzes the
reduction of 3-hydroshikimate to shikimate using the
cofactor NADH. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily
and include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+
as a cofactor. The NAD(P)-binding Rossmann fold
superfamily includes a wide variety of protein families
including NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DHs, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 155
Score = 31.9 bits (73), Expect = 0.27
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGI--KLSPLL 63
+ ++GAG A++ +A G A + ++ R T AKAL +L +
Sbjct: 21 KVLILGAGGAARAVAYALAELGAAKIVIVNR----------TLEKAKALAERFGELGIAI 70
Query: 64 NFSSDHTLLQNADIVLFATS 83
+ LL AD+++ T
Sbjct: 71 AYLDLEELLAEADLIINTTP 90
>gnl|CDD|30518 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and
metabolism].
Length = 283
Score = 29.9 bits (67), Expect = 0.97
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
+ ++GAG A++ +A G +T++ R ++L A + +
Sbjct: 128 RVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEEL------ADLFGELGAAVEAAA 181
Query: 66 SSDHTLLQNADIVLFATS 83
+D L+ AD+++ AT
Sbjct: 182 LADLEGLEEADLLINATP 199
>gnl|CDD|31442 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid
metabolism].
Length = 307
Score = 29.1 bits (65), Expect = 1.7
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLL---------GRKEI---LMQQLEDTRINAKA 53
+ VIGAG G +++V A G +V L I L + +E ++ +
Sbjct: 5 KVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEE 63
Query: 54 LPGIKLSPLLNFSSDHTLLQNADIVLFA 81
L+ + ++D L++AD+V+ A
Sbjct: 64 -ADAALA-RITPTTDLAALKDADLVIEA 89
>gnl|CDD|31364 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 29.0 bits (65), Expect = 1.7
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 103 EIIICSKGFEYNSGMLLSSYSEKVL--PSHSISVLSGPGFARDIAQGLPVGVILSSKNID 160
+I++ + E + M K++ P+ ++++ + + QG V VILS NID
Sbjct: 258 DIVLVDED-EICAAMRDLFERTKIIAEPAGALALAALLAGKIEPLQGKTVVVILSGGNID 316
Query: 161 ISR 163
R
Sbjct: 317 FER 319
>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic
enzyme (ME), subgroup 2. Malic enzyme (ME), a member of
the amino acid dehydrogenase (DH)-like domain family,
catalyzes the oxidative decarboxylation of L-malate to
pyruvate in the presence of cations (typically Mg++ or
Mn++) with the concomitant reduction of cofactor NAD+ or
NADP+. ME has been found in all organisms, and plays
important roles in diverse metabolic pathways such as
photosynthesis and lipogenesis. This enzyme generally
forms homotetramers. The conversion of malate to
pyruvate by ME typically involves oxidation of malate to
produce oxaloacetate, followed by decarboxylation of
oxaloacetate to produce pyruvate and CO2. This
subfamily consists primarily of archaeal and bacterial
ME. Amino acid DH-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and include
glutamate, leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 226
Score = 28.8 bits (65), Expect = 2.2
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 5 STIFVIGAGAFGTALSSVIASRGL--ANVTLLGRKEILMQQLEDTRINAKALPGIKLSPL 62
I + GAGA G A++ ++ + G N+ ++ K ++ + ED K + +P
Sbjct: 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE 85
Query: 63 LNFSSDHTLLQNADIVL 79
+ L+ AD+ +
Sbjct: 86 KTGGTLKEALKGADVFI 102
>gnl|CDD|30915 COG0569, TrkA, K+ transport systems, NAD-binding component
[Inorganic ion transport and metabolism].
Length = 225
Score = 28.3 bits (63), Expect = 3.4
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
I +IGAG G +++ ++ G NV L+ R E +++ ++ + G +
Sbjct: 2 KIIIIGAGRVGRSVARELSEEG-HNVVLIDRDEERVEEFLADELDTHVVIG-------DA 53
Query: 66 SSDHTL----LQNADIVLFATSS 84
+ + L + +AD V+ AT +
Sbjct: 54 TDEDVLEEAGIDDADAVVAATGN 76
>gnl|CDD|31934 COG1748, LYS9, Saccharopine dehydrogenase and related proteins
[Amino acid transport and metabolism].
Length = 389
Score = 27.9 bits (62), Expect = 4.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGR 36
M I VIGAG G+ ++ +A G VT+ R
Sbjct: 1 MMK---ILVIGAGGVGSVVAHKLAQNGDGEVTIADR 33
>gnl|CDD|146194 pfam03435, Saccharop_dh, Saccharopine dehydrogenase. This family
comprised of three structural domains that can not be
separated in the linear sequence. In some organisms
this enzyme is found as a bifunctional polypeptide with
lysine ketoglutarate reductase. The saccharopine
dehydrogenase can also function as a saccharopine
reductase.
Length = 384
Score = 27.7 bits (62), Expect = 4.8
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 7 IFVIGAGAFGTALSSVIASRG-LANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
+ +IGAG G ++ ++A G + +T+ R Q L ++ + + I + N+
Sbjct: 1 VLIIGAGGVGQGVAPLLARHGDVDEITVADRSLEKAQALAAPKLGLRFIA-IAVDA-DNY 58
Query: 66 SSDHTLLQNADIVL 79
+ LL+ D+V+
Sbjct: 59 EALAALLKEGDLVI 72
>gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase
precursor [Amino acid transport and metabolism].
Length = 856
Score = 27.6 bits (61), Expect = 4.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39
+ + + + VIG G+ G + + +A RG+ LL R +
Sbjct: 36 LPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRL 74
>gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 309
Score = 27.7 bits (62), Expect = 5.1
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 7 IFVIGAGAFG--TALSSVIASRGLANVTLLGRKEI 39
+ VIG G G TA +A RGL +VTLL R ++
Sbjct: 2 VVVIGGGIVGLSTAYE--LARRGL-SVTLLERGDL 33
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino
acid dehydrogenase-like proteins. Amino acid
dehydrogenase(DH)-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and are found
in glutamate, leucine, and phenylalanine DHs (DHs),
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+
as a cofactor. The NAD(P)-binding Rossmann fold
superfamily includes a wide variety of protein families
including NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 86
Score = 27.3 bits (61), Expect = 6.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGR 36
T+ V+GAG G ++ ++A G V L R
Sbjct: 25 TVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55
>gnl|CDD|31283 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 588
Score = 27.2 bits (60), Expect = 6.8
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 6 TIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLN 64
T+ V G G+ G+ L I + L R E L D + K P +KL +
Sbjct: 252 TVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-YKLYLIDMELREK-FPELKLRFYIG 309
Query: 65 FSSDHTLLQNA------DIVLFATSSK 85
D ++ A DIV A + K
Sbjct: 310 DVRDRDRVERAMEGHKVDIVFHAAALK 336
>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase. L-threonine
dehydrogenase (TDH) catalyzes the zinc-dependent
formation of 2-amino-3-ketobutyrate from L-threonine,
via NAD(H)-dependent oxidation. THD is a member of the
zinc-requiring, medium chain NAD(H)-dependent alcohol
dehydrogenase family (MDR). MDRs have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The N-terminal region typically
has an all-beta catalytic domain. These proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and have 2 tightly
bound zinc atoms per subunit. Sorbitol and aldose
reductase are NAD(+) binding proteins of the polyol
pathway, which interconverts glucose and fructose.
Length = 334
Score = 27.1 bits (61), Expect = 7.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38
+K ++ V GAG G L+ ++ G + VT+ E
Sbjct: 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNE 194
>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear
Dbf2-Related kinase-like Protein Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), NDR kinase
subfamily, fungal NDR-like proteins, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The NDR subfamily is
part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This group is composed of
fungal NDR-like proteins including Saccharomyces
cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe
Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and
Neurospora crassa Cot1. Like NDR kinase, group members
contain an N-terminal regulatory (NTR) domain and an
insert within the catalytic domain that contains an
auto-inhibitory sequence. CBK1 is an essential
component in the RAM (regulation of Ace2p activity and
cellular morphogenesis) network. CBK1 and Orb6 play
similar roles in coordinating cell morphology with cell
cycle progression. Ukc1 is involved in morphogenesis,
pathogenicity, and pigment formation. Cot1 plays a role
in polar tip extension.
Length = 377
Score = 27.1 bits (60), Expect = 7.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 3 NYSTIFVIGAGAFG 16
++ T+ VIG GAFG
Sbjct: 2 DFHTVKVIGKGAFG 15
>gnl|CDD|35809 KOG0589, KOG0589, KOG0589, Serine/threonine protein kinase
[General function prediction only].
Length = 426
Score = 26.9 bits (59), Expect = 7.7
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQL-EDTRINA 51
M NY + +G GAFG S + R ++ L K+I +++L E R +A
Sbjct: 3 MDNYEVLRQVGRGAFG----SALLVRHKSDDKLYVLKKINLEKLTEPERRSA 50
>gnl|CDD|34516 COG4907, COG4907, Predicted membrane protein [Function unknown].
Length = 595
Score = 26.5 bits (58), Expect = 9.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 16 GTALSSVIASRGLANVTLLGRKEILMQQLEDTRI 49
A SV+ + G + L RK++L + ED +
Sbjct: 318 FVATKSVLNNEGYITIVDLIRKKVLKLETEDKKT 351
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.135 0.371
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,598,031
Number of extensions: 184118
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 578
Number of HSP's successfully gapped: 39
Length of query: 329
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 235
Effective length of database: 4,232,491
Effective search space: 994635385
Effective search space used: 994635385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)