RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781039|ref|YP_003065452.1| putative glycerol-3-phosphate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(329 letters)
>gnl|CDD|178859 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Validated.
Length = 325
Score = 330 bits (850), Expect = 2e-91
Identities = 129/325 (39%), Positives = 196/325 (60%), Gaps = 10/325 (3%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
I V+GAG++GTAL+ V+A G +VTL R ++ R N + LPGIKL L
Sbjct: 3 KIAVLGAGSWGTALAIVLARNG-HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA 61
Query: 66 SSD-HTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSE 124
++D L +AD++L A S+ E L L A I+ +KG E +G LLS E
Sbjct: 62 TTDLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLE 121
Query: 125 KVLP-SHSISVLSGPGFARDIAQGLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDRI 183
+ LP I+VLSGP FA+++A+GLP V+++S + +++ R+ ++ + FRVY + D I
Sbjct: 122 EELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVI 181
Query: 184 GVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILRLSGV 243
GV++GGALKNVIAIA+GI G G GD+ARA ++ +GL+EI +L A+ +T L L+G+
Sbjct: 182 GVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAGL 241
Query: 244 GDLILTATSEQSRNFCFGIALGRGEKQNPDQI-----QLVEGAIAVSCVINISKKMGLKL 298
GDL+LT TS SRN FG+ALG+G+ ++ + EG V ++KK+G+++
Sbjct: 242 GDLVLTCTSPLSRNRRFGLALGQGKS--LEEALAEIGMVAEGVRTAKAVYELAKKLGVEM 299
Query: 299 PIFQAISDVMMNHISVDEALSILLN 323
PI +A+ V+ EA+ L+
Sbjct: 300 PITEAVYAVLYEGKDPREAVEDLMG 324
>gnl|CDD|171500 PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 341
Score = 202 bits (516), Expect = 1e-52
Identities = 111/323 (34%), Positives = 176/323 (54%), Gaps = 13/323 (4%)
Query: 9 VIGAGAFGTALSSVIASRGLANVTLL-GRKEILMQQLEDTRINAKALP-GIKLSPLLNFS 66
V+G G++GT ++S+ A RG TL R + D N++ L + LS L +
Sbjct: 12 VLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRAT 68
Query: 67 SD-HTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEK 125
+D AD+V+ S G+ L + L+ ++ KG E + M +S E+
Sbjct: 69 TDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE 128
Query: 126 VLPSHSISVLSGPGFARDIAQGLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDRIGV 185
VLP H +L+GP AR++A+G +L+ + ++ RLS + T FRVY +DD +GV
Sbjct: 129 VLPGHPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGV 188
Query: 186 QIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILRLSGVGD 245
++ GALKNV AIA G+ G G++ RA+V+ + L E+ KL AM G +T L+G+GD
Sbjct: 189 EMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLAGMGD 248
Query: 246 LILTATSEQSRNFCFGIALGRGEKQNPDQI-----QLVEGAIAVSCVINISKKMGLKLPI 300
LI+T TS++SRN G LG G+ D+I Q+ EG A S V+ + + GL +PI
Sbjct: 249 LIVTCTSQRSRNRHVGEQLGAGKPI--DEIIASMNQVAEGVKAASVVMEFADEYGLNMPI 306
Query: 301 FQAISDVMMNHISVDEALSILLN 323
+ + V+ + +V++A L+
Sbjct: 307 AREVDAVINHGSTVEQAYRGLIA 329
>gnl|CDD|173083 PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 326
Score = 200 bits (510), Expect = 4e-52
Identities = 115/326 (35%), Positives = 193/326 (59%), Gaps = 9/326 (2%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
I ++GAG+FGTA++ ++S+ + +V L GR + + R N K LP L ++
Sbjct: 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISV 60
Query: 66 SS--DHTLLQNADIVLFATSSKGYGE-ALNFYSNWLKESAEIIICSKGFEYNSGMLLSSY 122
S D L NA ++ A ++ LK++ I+ICSKG E +S S
Sbjct: 61 KSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEI 120
Query: 123 SEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDR 182
++LP++ I++LSGP FA++IA+ LP ++L+ +N + L L+ ++ ++ S D
Sbjct: 121 VNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDI 180
Query: 183 IGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRAD--TILRL 240
IGVQIG ALKN+IAIA GI+ G+ G++A A V+ +G++EI L A NG D T++
Sbjct: 181 IGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGP 240
Query: 241 SGVGDLILTATSEQSRNFCFGIALGRGEKQNP---DQIQLVEGAIAVSCVINISKKMGLK 297
S +GDLILT T+ SRN FG +G G N + ++EG V +I+++KK+ ++
Sbjct: 241 SCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIE 300
Query: 298 LPIFQAISDVMMNHISVDEALSILLN 323
LPI ++I +++ +IS+++ +S++L+
Sbjct: 301 LPICESIYNLLYENISLEKTISVILS 326
>gnl|CDD|184769 PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 328
Score = 195 bits (497), Expect = 1e-50
Identities = 116/326 (35%), Positives = 179/326 (54%), Gaps = 11/326 (3%)
Query: 9 VIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD 68
V+GAGA+GTAL+ + AS+G+ V L R+ L R N + LPG+ L L ++D
Sbjct: 9 VLGAGAWGTALAVLAASKGVP-VRLWARRPEFAAALAAERENREYLPGVALPAELYPTAD 67
Query: 69 HT-LLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKV- 126
L AD + A SK E L L + + C+KG + G L S + +
Sbjct: 68 PEEALAGADFAVVAVPSKALRETLA----GLPRALGYVSCAKGLAPDGGRL-SELARVLE 122
Query: 127 -LPSHSISVLSGPGFARDIAQGLPVGVILSSKNIDISRRLSKILTTDSFRVYCSDDRIGV 185
L ++VLSGP A +IA+ LP +++S ++RR+ + SFRVY S DR+GV
Sbjct: 123 FLTQARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGV 182
Query: 186 QIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILRLSGVGD 245
++GGALKNVIA+A+G++ G GD+A+A ++ +GL E+++ A+ T LSG+GD
Sbjct: 183 ELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGD 242
Query: 246 LILTATSEQSRNFCFGIALGRG-EKQNPDQI-QLVEGAIAVSCVINISKKMGLKLPIFQA 303
LI TATS SRN G A+ RG ++++ + ++VEG V + +K G LPI +A
Sbjct: 243 LIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEA 302
Query: 304 ISDVMMNHISVDEALSILLNHSSEEQ 329
++ V L L+ ++E+
Sbjct: 303 VARVARGGWDPLAGLRSLMGREAKEE 328
>gnl|CDD|184770 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 308
Score = 164 bits (418), Expect = 2e-41
Identities = 90/333 (27%), Positives = 169/333 (50%), Gaps = 45/333 (13%)
Query: 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLS 60
TI ++GAGA+G+ L+ + ++ G V + R+ L
Sbjct: 1 TTQPKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR--SGLSLA--------------- 42
Query: 61 PLLNFSSDHTLLQNADIVLFATSSKGYGE------ALNFYSNWLKESAEIII--CSKGFE 112
+L +AD+++ A S KG ALN E II +KG +
Sbjct: 43 ---------AVLADADVIVSAVSMKGVRPVAEQVQALNL-------PPETIIVTATKGLD 86
Query: 113 YNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNIDISRRLSKILTTD 172
+ S + P+H + VLSGP +++I QGLP +++S+++ + + +I +++
Sbjct: 87 PETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSE 146
Query: 173 SFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNG 232
FRVY + D +G ++GG LKNVIAIA+G+ G G +A+A ++ + L E++++ +
Sbjct: 147 RFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGA 206
Query: 233 RADTILRLSGVGDLILTATSEQSRNFCFGIALGRGE--KQNPDQIQ-LVEGAIAVSCVIN 289
+ +T LSG+GDL+ T TS SRN+ G L +G+ +Q +++ EG + ++
Sbjct: 207 QTETFYGLSGLGDLLATCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQ 266
Query: 290 ISKKMGLKLPIFQAISDVMMNHISVDEALSILL 322
++++ + +PI + + ++ I+ +AL L+
Sbjct: 267 LAQQQNIAVPITEQVYRLLQGEITPQQALEELM 299
>gnl|CDD|163240 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase
(NAD(+)). Members of this protein family are the
eukaryotic enzyme, glycerol-3-phosphate dehydrogenase
(NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is
defined as sn-glycerol 3-phosphate + NAD(+) = glycerone
phosphate + NADH. Note the very similar reactions of
enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to
families of proteins in the bacteria.
Length = 342
Score = 158 bits (401), Expect = 2e-39
Identities = 101/344 (29%), Positives = 148/344 (43%), Gaps = 36/344 (10%)
Query: 9 VIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED-------TRI------NAKALP 55
V+G+G +GTA++ ++A A L + + M E+ T I N K LP
Sbjct: 4 VVGSGNWGTAIAKIVAENARALPELF-EESVRMWVFEEEIEGRNLTEIINTTHENVKYLP 62
Query: 56 GIKLSPLLNFSSD-HTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYN 114
GIKL L D + ADI++F + +K +A I C KG E +
Sbjct: 63 GIKLPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122
Query: 115 SG--MLLSSYSEKVLPSHSISVLSGPGFARDIAQG----LPVGVILSSKNIDISRRLSKI 168
LLS E+ L VLSG A ++A+ VG + +R L +
Sbjct: 123 KDGVKLLSDIIEEELGIP-CGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKAL 181
Query: 169 LTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTE 228
FRV DD GV+I GALKNV+AIA+G + G G GD+A+A VM +GL E++K
Sbjct: 182 FHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFAR 241
Query: 229 AM--NGRADTILRLSGVGDLILTATSEQSRNFCFGIALGRG-------EKQNPDQIQLVE 279
G GV DLI T RNF G A + EK+ + Q ++
Sbjct: 242 MFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNG-QSLQ 298
Query: 280 GAIAVSCVINISKKMGL--KLPIFQAISDVMMNHISVDEALSIL 321
G V + K + P+F+A+ ++ + + L
Sbjct: 299 GVATAKEVHELLKNKNKDDEFPLFEAVYQILYEGLPPKKLPECL 342
>gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate
dehydrogenase C-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyses the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
C-terminal substrate-binding domain.
Length = 145
Score = 129 bits (326), Expect = 1e-30
Identities = 60/144 (41%), Positives = 90/144 (62%), Gaps = 7/144 (4%)
Query: 180 DDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEAMNGRADTILR 239
+D +GV+IGGALKNVIAIA+GIL G G GD+ +A ++ +GL E++K A+ G +T
Sbjct: 1 EDVVGVEIGGALKNVIAIAAGILDGLGFGDNTKAALITRGLMEMIKFGAALGGGPETFFG 60
Query: 240 LSGVGDLILTATSEQSRNFCFGIALGRGEKQNPDQI-----QLVEGAIAVSCVINISKKM 294
L+G+GDLI T TSE RN G ALG+G+ ++I Q+ EG V ++K+
Sbjct: 61 LAGLGDLITTCTSELGRNRRVGEALGKGKS--LEEIEKELGQVAEGVKTAKEVYELAKRK 118
Query: 295 GLKLPIFQAISDVMMNHISVDEAL 318
GL P+F A+ ++ + +EA+
Sbjct: 119 GLDFPLFTAVYRILYEGLKPEEAI 142
>gnl|CDD|185569 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase;
Provisional.
Length = 365
Score = 84.3 bits (209), Expect = 4e-17
Identities = 73/262 (27%), Positives = 120/262 (45%), Gaps = 25/262 (9%)
Query: 9 VIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLED-------------TRINAKALP 55
VIG+G +G+A+S V+ + E+ M LE+ N K LP
Sbjct: 16 VIGSGNWGSAISKVVGEN--TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLP 73
Query: 56 GIKLSP--LLNFSSDHTLLQNADIVLFATSSKGYGEALNFY--SNWLKESAEIIICSKGF 111
GIKL P ++ S +++AD+++F + L+ +N LK+ A I +KG
Sbjct: 74 GIKL-PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGI 132
Query: 112 --EYNSGMLLSSYSEKVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNIDISRRLSKIL 169
E +L S E+ L LSG A D+A+ + ++ D + ++
Sbjct: 133 IVENGKPVLCSDVIEEEL-GIPCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLF 191
Query: 170 TTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGLSEIMKLTEA 229
F++ C D IGV++ GALKN+IA+A+G G G G + ++ ++ GL E+ +
Sbjct: 192 DRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKI 251
Query: 230 M--NGRADTILRLSGVGDLILT 249
N +T G+ DLI T
Sbjct: 252 FFPNVMDETFFESCGLADLITT 273
>gnl|CDD|181308 PRK08229, PRK08229, 2-dehydropantoate 2-reductase; Provisional.
Length = 341
Score = 41.5 bits (98), Expect = 3e-04
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 21/111 (18%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLS----- 60
I V+GAG+ G L +A+ G A+VTL+GR I + G+ L+
Sbjct: 4 RICVLGAGSIGCYLGGRLAAAG-ADVTLIGRARI---------GDELRAHGLTLTDYRGR 53
Query: 61 ------PLLNFSSDHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEII 105
+ FS+D L AD+VL S +A + + A ++
Sbjct: 54 DVRVPPSAIAFSTDPAALATADLVLVTVKSAATADAAAALAGHARPGAVVV 104
>gnl|CDD|178819 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.
Length = 423
Score = 35.9 bits (84), Expect = 0.016
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
+ VIGAG G ++ +A +G+ +T+ R ++L + +A+P
Sbjct: 184 KVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAE-EFGGEAIP---------L 233
Query: 66 SSDHTLLQNADIVLFATSSKGY 87
L ADIV+ +T +
Sbjct: 234 DELPEALAEADIVISSTGAPHP 255
>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed.
Length = 307
Score = 35.1 bits (82), Expect = 0.022
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKE 38
I +IGAG G L+ ++A + L +V L E
Sbjct: 5 ISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36
>gnl|CDD|183829 PRK12921, PRK12921, 2-dehydropantoate 2-reductase; Provisional.
Length = 305
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
I V+GAGA G + G +VT L R + L + + ++ G + P
Sbjct: 2 RIAVVGAGAVGGTFGGRLLEAG-RDVTFLVRPKRAK-ALRERGLVIRSDHGDAVVPGPVI 59
Query: 66 SSDHTLLQNADIVLFAT 82
+ L D+V+ A
Sbjct: 60 TDPEELTGPFDLVILAV 76
>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB. This
model describes the molybdopterin biosynthesis protein
MoeB in E. coli and related species. The enzyme
covalently modifies the molybdopterin synthase MoaD by
sulfurylation. This enzyme is closely related to ThiF, a
thiamine biosynthesis enzyme that modifies ThiS by an
analogous adenylation. Both MoeB and ThiF belong to the
HesA/MoeB/ThiF family (pfam00899).
Length = 240
Score = 32.5 bits (74), Expect = 0.17
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 20/108 (18%)
Query: 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLE------DTRINAKAL---- 54
S + ++G G G A S +A+ G+ N+TLL + + L+ D I +
Sbjct: 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAK 84
Query: 55 -------PGIKLSPLLNFSSDH---TLLQNADIVLFATSSKGYGEALN 92
P I ++P+ D L+ DIV+ T + LN
Sbjct: 85 DALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLN 132
>gnl|CDD|162168 TIGR01035, hemA, glutamyl-tRNA reductase. This enzyme, together
with glutamate-1-semialdehyde-2,1-aminomutase
(TIGR00713), leads to the production of
delta-amino-levulinic acid from Glu-tRNA.
Length = 417
Score = 32.0 bits (73), Expect = 0.21
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
+IGAG G ++ + +G+ + + R + L AK L G + F
Sbjct: 182 KALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDL------AKELGGEAVK----F 231
Query: 66 SSDHTLLQNADIVLFATSSK 85
L ADIV+ +T +
Sbjct: 232 EDLEEYLAEADIVISSTGAP 251
>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis
ThiF/MoeB-like protein; Validated.
Length = 339
Score = 30.3 bits (69), Expect = 0.69
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILM-----QQLEDTRINAKALP 55
+ +IGAGA GTA + ++ G+ VT++ R + QQL LP
Sbjct: 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLP 80
>gnl|CDD|163112 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase. All of
these enzymes contain three Pfam domains, pfam03721,
pfam00984, and pfam03720 for the N-terminal, central,
and C-terminal regions respectively.
Length = 411
Score = 29.9 bits (68), Expect = 0.91
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 28/104 (26%)
Query: 5 STIFVIGAGAFGTALSSVIASRGLANVTLL------------GR---KEILMQQLEDTRI 49
I VIG G G L++++A G VT + G+ E + +L +
Sbjct: 1 MKIAVIGLGYVGLPLAALLADLG-HEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKAL 59
Query: 50 NAKALPGIKLSPLLNFSSDHT-LLQNADIVLFA--TSSKGYGEA 90
A L ++D+ +++AD+++ T K G
Sbjct: 60 AAGR---------LRATTDYEDAIRDADVIIICVPTPLKEDGSP 94
>gnl|CDD|163290 TIGR03492, TIGR03492, conserved hypothetical protein. This protein
family is restricted to the Cyanobacteria, in one or two
copies, save for instances in the genus Deinococcus.
This protein shows some sequence similarity, especially
toward the C-terminus, to lipid-A-disaccharide synthase
(TIGR00215 or pfam02684). The function is unknown.
Length = 396
Score = 29.5 bits (67), Expect = 1.1
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 125 KVLPSHSISVLSGPGFARDIAQGLPVGVILSSKNIDISRRLSK 167
K LPS S S G RD+ GL V L+ R+ +K
Sbjct: 53 KELPSGGFSYQSLRGLLRDLRAGL---VGLTLGQWRALRKWAK 92
>gnl|CDD|182369 PRK10307, PRK10307, putative glycosyl transferase; Provisional.
Length = 412
Score = 29.6 bits (67), Expect = 1.1
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 18/72 (25%)
Query: 7 IFVI-GAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
IFVI G G L + RGL NV L +Q + L LL
Sbjct: 261 IFVICGQGGGKARLEKMAQCRGLPNVHFLP-----LQPYDR------------LPALLKM 303
Query: 66 SSDHTLLQNADI 77
+ H L Q A
Sbjct: 304 ADCHLLPQKAGA 315
>gnl|CDD|173621 PTZ00431, PTZ00431, pyrroline carboxylate reductase; Provisional.
Length = 260
Score = 28.8 bits (64), Expect = 1.8
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLS 60
M+N F IG G G+AL+ G+ N ++G++ I P K +
Sbjct: 1 MENIRVGF-IGLGKMGSALA-----YGIENSNIIGKENIYYHT-----------PSKKNT 43
Query: 61 PLLNFSSDHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIIC 107
P + S+ L + DI++ A G+ L +L I IC
Sbjct: 44 PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISIC 90
>gnl|CDD|162025 TIGR00759, aceE, pyruvate dehydrogenase E1 component, homodimeric
type. WARNING: This family is classified as subfamily
rather than equivalog because it includes a
counterexample from Pseudomonas putida, MdeB, that is
active as an E1 component of an alpha-ketoglutarate
dehydrogenase complex rather than a pyruvate dehydrogase
complex. The second pyruvate dehydrogenase complex E1
protein from Alcaligenes eutrophus, PdhE, complements an
aceE mutant of E. coli but is not part of a pyruvate
dehydrogenase complex operon, is more similar to the
Pseudomonas putida MdeB than to E. coli AceE, and may
have also have a different primary specificity.
Length = 885
Score = 29.0 bits (65), Expect = 2.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 243 VGDLILTATSEQSRNFCFGIALGR----GEK-QNPDQIQLVEGAIAVSCV 287
+GDL A +++R F G GR GE Q+ D L++ A +C+
Sbjct: 604 IGDLCWAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCI 653
>gnl|CDD|179330 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 28.7 bits (65), Expect = 2.1
Identities = 27/89 (30%), Positives = 31/89 (34%), Gaps = 19/89 (21%)
Query: 7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALP-GIKLSPLLNF 65
+IG G G AL+ +A RG VTL E Q A G L PLL
Sbjct: 263 AAIIGGGIAGAALALALARRG-WQVTLYEADEAPAQ-------GASGNRQGA-LYPLL-- 311
Query: 66 SSDHTLLQNADIVLFATSSKGYGEALNFY 94
S D L F + A FY
Sbjct: 312 SKDDNALSR----FFRA---AFLFARRFY 333
>gnl|CDD|180603 PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.
Length = 304
Score = 28.7 bits (65), Expect = 2.1
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 1 MKNYSTIFVIGAGA----FGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPG 56
MK I ++GAGA FG AL ++ +VTL+ R+ L+ N L
Sbjct: 1 MK----IAILGAGAIGGLFGAAL-----AQAGHDVTLVARRG---AHLDALNENGLRLED 48
Query: 57 IKLSPLLNFSSDHTLLQNADIVLFAT 82
+++ + + D L D+V+ A
Sbjct: 49 GEITVPVLAADDPAELGPQDLVILAV 74
>gnl|CDD|178123 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 28.6 bits (64), Expect = 2.4
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 9 VIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDT--RINAKALP--GIKLSPLLN 64
V+G G +S+ G A V L RKE+ ++ +D + A+ L GI L P N
Sbjct: 208 VLGGGYIAVEFASIWRGMG-ATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTN 266
Query: 65 FS------------SDHTLLQNADIVLFATSSKGYGEALN 92
+ +DH AD+VLFAT + LN
Sbjct: 267 LTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLN 306
>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like
protein; Provisional.
Length = 338
Score = 28.5 bits (64), Expect = 2.5
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 28/103 (27%)
Query: 5 STIFVIGAGAFGTALSSVIASRGLANVTLLGR-----KEILMQQL---EDTR------IN 50
+ ++GAGA G A + + G+ +T+ R + QQL ED + I
Sbjct: 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIA 84
Query: 51 AKAL-----PGIKLSPLLNFSSDHT------LLQNADIVLFAT 82
AK +++ P +D T L++ D+++ AT
Sbjct: 85 AKEHLRKINSEVEIVP---VVTDVTVEELEELVKEVDLIIDAT 124
>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 450
Score = 28.0 bits (63), Expect = 3.3
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLS 60
+ V+GAG G AL+ + G A V L KE QL++ + GI+L
Sbjct: 8 VLVVGAGVSGLALAKFLKKLG-AKVILTDEKE--EDQLKEA-LEELGELGIELV 57
>gnl|CDD|131332 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC.
This 3-hydroxyacyl-CoA dehydrogenase is involved in
the degradation of phenylacetic acid, presumably in
steps following the opening of the phenyl ring. The
sequences included in this model are all found in
aparrent operons with other related genes such as paaA,
paaB, paaD, paaE, paaF and paaN. Some genomes contain
these other genes without an apparent paaC in the same
operon - possibly in these cases a different
dehydrogenase involved in fatty acid degradation may
fill in the needed activity. This enzyme has domains
which are members of the pfam02737 and pfam00725
families.
Length = 503
Score = 28.0 bits (62), Expect = 3.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1 MKNYSTIFVIGAGAFGTALSSVIASRG 27
+ N T+ VIGAGA G ++ V AS G
Sbjct: 2 LINVVTVAVIGAGAMGAGIAQVAASAG 28
>gnl|CDD|177793 PLN00203, PLN00203, glutamyl-tRNA reductase.
Length = 519
Score = 27.8 bits (62), Expect = 3.9
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 9 VIGAGAFGTALSSVIASRGLANVTLLGRKE----ILMQQLEDTRINAKALPGIKLSPLLN 64
VIGAG G L + S+G + ++ R E L ++ D I K L +
Sbjct: 271 VIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEM------- 323
Query: 65 FSSDHTLLQNADIVLFATSS 84
AD+V +TSS
Sbjct: 324 ----LACAAEADVVFTSTSS 339
>gnl|CDD|162352 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria.
Length = 446
Score = 27.9 bits (62), Expect = 4.3
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQL-EDTRIN-AKALP--GIKLSP- 61
I ++G G + + G VTL+ R E++++ +D R A+ + GI++ P
Sbjct: 169 ILILGGGYIAVEFAGIWRGLG-VQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQ 227
Query: 62 ------------LLNFSSDHTLLQNADIVLFATSSKGYGEALN 92
L S + AD+VLFAT + L
Sbjct: 228 TSLTSITKTDDGLKVTLSHGEEIV-ADVVLFATGRSPNTKGLG 269
>gnl|CDD|178949 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.
Length = 278
Score = 27.5 bits (62), Expect = 4.8
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
I ++GAG A+ + G+A +T++ R ++L AL +L L
Sbjct: 125 RILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK---LFGALGKAELDLEL-- 179
Query: 66 SSDHTLLQNADIVLFATSSKGYGEA 90
L + D+++ ATS+ GE
Sbjct: 180 ---QEELADFDLIINATSAGMSGEL 201
>gnl|CDD|148488 pfam06894, Phage_lambd_GpG, Bacteriophage lambda minor tail protein
(GpG). This family consists of Bacteriophage lambda
minor tail protein G and related sequences. The role of
GpG in tail assembly is not known.
Length = 127
Score = 27.5 bits (61), Expect = 4.9
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 161 ISRRLSKILTTDSFRVYCSDDRIGVQIGGALKNVIAIASGILKGRGCGDSARAIVMVQGL 220
I +R + T +V + ++GV+I L + LKG+G + Q
Sbjct: 32 IQQRTEQYETQADRQV--AIMQMGVEINAWLVAMSLWHGHPLKGQGPSMEEEVATIYQ-- 87
Query: 221 SEIMKL--TEAMNGRADTILRLSGVGDLILTATSEQS 255
E+M EA+ A+ +L LSG+ + SE++
Sbjct: 88 -EVMTTWPYEALGAAAERVLSLSGMAPVRDDPASEET 123
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human, pig, and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 27.5 bits (61), Expect = 5.2
Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 31/173 (17%)
Query: 6 TIFVIGAGAFGTALSSVIASRGL------ANVTLLGRKEILMQQLEDTRINAKALPGIKL 59
T+ V+GAG G ++ V +GL A L R + + + + ++ K + ++
Sbjct: 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLER 396
Query: 60 SPLLNF---SSDHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSG 116
+L+ + D++ +NAD+V+ A E L+ +KE ++ N+
Sbjct: 397 DSILSNLTPTLDYSGFKNADMVIEAVF-----EDLSLKHKVIKEVEAVVPPHCIIASNTS 451
Query: 117 ML-------LSSYSEKVLPSHSIS---------VLSGPGFARD-IAQGLPVGV 152
L +SS EKV+ H S +++ G ++D +A + VG+
Sbjct: 452 ALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGL 504
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. The calcium P-type ATPases have been
characterized as Type IIA based on a phylogenetic
analysis which distinguishes this group from the Type
IIB PMCA calcium pump modelled by TIGR01517. A separate
analysis divides Type IIA into sub-types, SERCA and PMR1
the former of which is modelled by TIGR01116.
Length = 884
Score = 27.5 bits (61), Expect = 5.3
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 144 IAQGLPV--------GVILSSKNIDISRRLSKILTTDSFRVYCSD 180
I +GLP+ GV+ SK I R+L + T S V CSD
Sbjct: 286 IPEGLPIIVTVTLALGVLRMSKKRAIVRKLPSVETLGSVNVICSD 330
>gnl|CDD|129757 TIGR00674, dapA, dihydrodipicolinate synthase. Dihydrodipicolinate
synthase is a homotetrameric enzyme of lysine
biosynthesis. E. coli has several paralogs closely
related to dihydrodipicoline synthase (DapA), as well as
the more distant N-acetylneuraminate lyase. In
Pyrococcus horikoshii, the bidirectional best hit with
E. coli is to an uncharacterized paralog of DapA, not
DapA itself, and it is omitted from the seed. The
putative members from the Chlamydias (pathogens with a
parasitic metabolism) are easily the most divergent
members of the multiple alignment.
Length = 285
Score = 27.3 bits (61), Expect = 5.6
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 164 RLSKI--LTTDSFRVYCSDDRIGVQI---GGALKNVIAIASGI--------LKGRGCGDS 210
R+S+I + D F V DD + + + GG K VI++ + + + GD
Sbjct: 166 RISEIKAIAPDDFVVLSGDDALTLPMMALGG--KGVISVTANVAPKLMKEMVNNALEGDF 223
Query: 211 ARAIVMVQGLSEIMK 225
A A + Q L + K
Sbjct: 224 AEAREIHQKLMPLHK 238
>gnl|CDD|149646 pfam08659, KR, KR domain. This enzymatic domain is part of
bacterial polyketide synthases and catalyses the first
step in the reductive modification of the beta-carbonyl
centres in the growing polyketide chain. It uses NADPH
to reduce the keto group to a hydroxy group.
Length = 181
Score = 27.1 bits (61), Expect = 6.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 11 GAGAFGTALSSVIASRGLANVTLLGR 36
G G G L+ +A RG ++ LL R
Sbjct: 8 GLGGLGLELARWLAERGARHLVLLSR 33
>gnl|CDD|182963 PRK11101, glpA, sn-glycerol-3-phosphate dehydrogenase subunit A;
Provisional.
Length = 546
Score = 26.9 bits (60), Expect = 8.3
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEI 39
+ + +IG GA G ++ A RGL L+ R +I
Sbjct: 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDI 40
>gnl|CDD|161904 TIGR00507, aroE, shikimate 5-dehydrogenase. This model finds
proteins from prokaryotes and functionally equivalent
domains from larger, multifunctional proteins of fungi
and plants. Below the trusted cutoff of 180, but above
the noise cutoff of 20, are the putative shikimate
dehydrogenases of Thermotoga maritima and Mycobacterium
tuberculosis, and uncharacterized paralogs of shikimate
dehydrogenase from E. coli and H. influenzae. The
related enzyme quinate 5-dehydrogenase scores below the
noise cutoff. A neighbor-joining tree, constructed with
quinate 5-dehydrogenases as the outgroup, shows the
Clamydial homolog as clustering among the shikimate
dehydrogenases, although the sequence is unusual in the
degree of sequence divergence and the presence of an
additional N-terminal domain.
Length = 270
Score = 26.6 bits (59), Expect = 8.5
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 1 MKNYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLS 60
++ + +IGAG A++ + NV + R A+ +
Sbjct: 114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTV------SKAEELAERFQ--RYG 164
Query: 61 PLLNFSSDHTLLQNADIVLFATSSKGYGE 89
+ FS D L D+++ ATS+ G
Sbjct: 165 EIQAFSMDELPLHRVDLIINATSAGMSGN 193
>gnl|CDD|150463 pfam09797, NatB_MDM20, N-acetyltransferase B complex (NatB) non
catalytic subunit. This is the non-catalytic subunit of
the N-terminal acetyltransferase B complex (NatB). The
NatB complex catalyses the acetylation of the
amino-terminal methionine residue of all proteins
beginning with Met-Asp or Met-Glu and of some proteins
beginning with Met-Asn or Met-Met. In Saccharomyces
cerevisiae this subunit is called MDM20 and in
Schizosaccharomyces pombe it is called Arm1. NatB
acetylates the Tpm1 protein and regulates and
tropomyocin-actin interactions. This subunit is required
by the NatB complex for the N-terminal acetylation of
Tpm1.
Length = 365
Score = 26.6 bits (59), Expect = 8.6
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 90 ALNFYSNWLKESAEIIICSKGFEYNS 115
AL FY N LKE++E+I SK FE+ S
Sbjct: 273 ALKFYLNSLKETSELI--SKAFEHGS 296
>gnl|CDD|181079 PRK07679, PRK07679, pyrroline-5-carboxylate reductase; Reviewed.
Length = 279
Score = 26.7 bits (59), Expect = 9.2
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNF 65
I +GAG+ A+ GL + ++ ++I + R N L + +
Sbjct: 5 NISFLGAGSIAEAIIG-----GLLHANVVKGEQITVSN----RSNETRLQELHQKYGVKG 55
Query: 66 SSDHT-LLQNADIVLFATSSKGYGEALNFYSNWLKESAEII 105
+ + LL +A+I+ A K EAL + ++ + II
Sbjct: 56 THNKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLII 96
>gnl|CDD|116608 pfam07998, Peptidase_M54, Peptidase family M54. This is a family
of metallopeptidases. Two human proteins have been
reported to degrade synthetic substrates and peptides.
Length = 176
Score = 26.7 bits (59), Expect = 9.7
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 74 NADIVLFATSSKGYGEALNFY 94
N D +L S Y + NF
Sbjct: 72 NDDSILPLGSRDQYFDGYNFV 92
>gnl|CDD|180808 PRK07048, PRK07048, serine/threonine dehydratase; Validated.
Length = 321
Score = 26.5 bits (59), Expect = 9.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 142 RDIAQGLPVGVILSSKNIDISR 163
+ +G VGVI+S N+D++R
Sbjct: 293 KVPLKGKRVGVIISGGNVDLAR 314
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.135 0.371
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,138,270
Number of extensions: 329186
Number of successful extensions: 828
Number of sequences better than 10.0: 1
Number of HSP's gapped: 802
Number of HSP's successfully gapped: 59
Length of query: 329
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 235
Effective length of database: 3,963,321
Effective search space: 931380435
Effective search space used: 931380435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)