HHsearch results for GI: 254781040 and protein with PDBid: 3eop_A
>3eop_A Thymocyte nuclear protein 1; protein of unknown function, alternative splicing, nucleus, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=0 Score=433.18 Aligned_cols=140 Identities=38% Similarity=0.675 Sum_probs=133.9
Q ss_pred CCCCEECCCCCC---------CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC-CCCCEEEEEECCCC
Q ss_conf 974500115886---------67789985868887777765899999998538897899994588-87634888860446
Q gi|254781040|r 1 MAYWLVKSEPSE---------WSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNK-GREIVGIFEVITCT 70 (143)
Q Consensus 1 M~yWL~KsEP~~---------~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~-~~~ivgi~~v~~~~ 70 (143)
|+||||||||++ ||||||.++++++++||||||||||||||+||+||+|||||||| .++|||+++|++++
T Consensus 1 M~YWL~KsEP~~~~~~g~~~~fSiddl~~~~~~~~~WdGVRNyqArn~lR~Mk~GD~~ffYHS~~~~~~IvGi~~V~~~a 80 (176)
T 3eop_A 1 MSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEA 80 (176)
T ss_dssp -CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEE
T ss_pred CCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEEEEE
T ss_conf 96244632788765567656374999986458888667704499999998655788899985278998289999998841
Q ss_pred CCCCCC-------------CCCCCEEEEECHHHCCCCCCCCHHHHHCCCC--------CCCCCCCCCCCCCEEECCHHHH
Q ss_conf 667764-------------4567227985032210799758889840820--------1146010057455011689999
Q gi|254781040|r 71 YPDPTA-------------EQSSCWECVDICAVCSMPCPVSLMAIKANPR--------LSSMILIVSSRLSVQPVTTDEY 129 (143)
Q Consensus 71 y~d~t~-------------~~~p~W~~VdVk~~~~l~~pVsL~~lK~~~~--------L~~m~Llk~~RLSV~PVt~~ew 129 (143)
|||+|+ +++|+|+||||+|+++|++||||++||+++. |++|.|+||+||||||||++||
T Consensus 81 yPD~Tafd~~s~Y~Dpkst~~~prW~~VdV~~v~~f~~~VtL~~LK~~~~~~~~~~~~L~~m~Lvr~sRLSV~PVt~~ew 160 (176)
T 3eop_A 81 YPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEF 160 (176)
T ss_dssp EECGGGTCTTSTTCCTTCCTTSCSCEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHHH
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHCHHHCCCCCCCCCCCEEEECCCCCEEECCHHHH
T ss_conf 32785425677654866656799768999998253488538999972810123456640268252158552675699999
Q ss_pred HHHHHHCCCCC
Q ss_conf 99999727999
Q gi|254781040|r 130 LEVCRMGKLSN 140 (143)
Q Consensus 130 ~~I~~L~~~~~ 140 (143)
++||+||++..
T Consensus 161 ~~I~~La~~~~ 171 (176)
T 3eop_A 161 DFVLSLEELEH 171 (176)
T ss_dssp HHHHHGGGCC-
T ss_pred HHHHHHHCCCC
T ss_conf 99999877744