Query gi|254781040|ref|YP_003065453.1| hypothetical protein CLIBASIA_04710 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 143 No_of_seqs 126 out of 1227 Neff 5.6 Searched_HMMs 23785 Date Wed Jun 1 00:14:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781040.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3eop_A Thymocyte nuclear prote 100.0 0 0 433.2 8.6 140 1-140 1-171 (176) 2 1zce_A Hypothetical protein AT 100.0 0 0 427.8 10.5 142 1-142 2-143 (155) 3 2gbs_A Hypothetical protein RP 100.0 0 0 425.9 11.0 140 1-141 1-140 (145) 4 2ar1_A Hypothetical protein; s 100.0 0 0 417.1 9.1 138 1-140 19-170 (172) 5 2eve_A Hypothetical protein ps 100.0 0 0 407.7 9.9 137 1-139 1-152 (157) 6 2p5d_A UPF0310 protein mjecl36 99.9 2.6E-28 1.1E-32 188.8 3.0 126 1-134 4-146 (147) 7 2hd9_A UPF0310 protein PH1033; 97.9 9.9E-07 4.1E-11 60.1 -1.1 119 1-134 1-142 (145) 8 2kku_A Uncharacterized protein 85.4 0.85 3.6E-05 24.7 4.1 58 41-98 57-147 (161) 9 2yu6_A YTH domain-containing p 64.6 4 0.00017 20.7 2.9 125 2-135 9-137 (141) 10 3bij_A Uncharacterized protein 63.5 4.5 0.00019 20.4 2.9 29 28-57 57-85 (285) 11 2hbw_A NLP/P60 protein; YP_323 55.0 6.6 0.00028 19.4 2.6 24 40-64 158-181 (235) 12 3h41_A NLP/P60 family protein; 54.1 10 0.00042 18.3 3.4 13 28-40 42-54 (311) 13 3gt2_A Putative uncharacterize 53.4 7.3 0.00031 19.1 2.6 21 41-63 88-108 (142) 14 3i86_A Putative uncharacterize 53.2 7.4 0.00031 19.1 2.6 22 41-64 84-105 (141) 15 2k8s_A Thioredoxin; dimer, str 45.3 6.4 0.00027 19.5 1.3 14 47-60 3-16 (80) 16 3ne0_A Resuscitation promoting 43.8 13 0.00053 17.7 2.6 22 41-64 157-178 (214) 17 2yud_A YTH domain-containing p 41.2 20 0.00084 16.5 5.9 128 2-138 27-165 (180) 18 2jyx_A Lipoprotein SPR; soluti 37.4 20 0.00083 16.6 2.8 23 41-64 66-88 (136) No 1 >3eop_A Thymocyte nuclear protein 1; protein of unknown function, alternative splicing, nucleus, phosphoprotein; 2.30A {Homo sapiens} Probab=100.00 E-value=0 Score=433.18 Aligned_cols=140 Identities=38% Similarity=0.675 Sum_probs=133.9 Q ss_pred CCCCEECCCCCC---------CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC-CCCCEEEEEECCCC Q ss_conf 974500115886---------67789985868887777765899999998538897899994588-87634888860446 Q gi|254781040|r 1 MAYWLVKSEPSE---------WSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNK-GREIVGIFEVITCT 70 (143) Q Consensus 1 M~yWL~KsEP~~---------~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~-~~~ivgi~~v~~~~ 70 (143) |+||||||||++ ||||||.++++++++||||||||||||||+||+||+|||||||| .++|||+++|++++ T Consensus 1 M~YWL~KsEP~~~~~~g~~~~fSiddl~~~~~~~~~WdGVRNyqArn~lR~Mk~GD~~ffYHS~~~~~~IvGi~~V~~~a 80 (176) T 3eop_A 1 MSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEA 80 (176) T ss_dssp -CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEE T ss_pred CCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEEEEE T ss_conf 96244632788765567656374999986458888667704499999998655788899985278998289999998841 Q ss_pred CCCCCC-------------CCCCCEEEEECHHHCCCCCCCCHHHHHCCCC--------CCCCCCCCCCCCCEEECCHHHH Q ss_conf 667764-------------4567227985032210799758889840820--------1146010057455011689999 Q gi|254781040|r 71 YPDPTA-------------EQSSCWECVDICAVCSMPCPVSLMAIKANPR--------LSSMILIVSSRLSVQPVTTDEY 129 (143) Q Consensus 71 y~d~t~-------------~~~p~W~~VdVk~~~~l~~pVsL~~lK~~~~--------L~~m~Llk~~RLSV~PVt~~ew 129 (143) |||+|+ +++|+|+||||+|+++|++||||++||+++. |++|.|+||+||||||||++|| T Consensus 81 yPD~Tafd~~s~Y~Dpkst~~~prW~~VdV~~v~~f~~~VtL~~LK~~~~~~~~~~~~L~~m~Lvr~sRLSV~PVt~~ew 160 (176) T 3eop_A 81 YPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEF 160 (176) T ss_dssp EECGGGTCTTSTTCCTTCCTTSCSCEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHHH T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHCHHHCCCCCCCCCCCEEEECCCCCEEECCHHHH T ss_conf 32785425677654866656799768999998253488538999972810123456640268252158552675699999 Q ss_pred HHHHHHCCCCC Q ss_conf 99999727999 Q gi|254781040|r 130 LEVCRMGKLSN 140 (143) Q Consensus 130 ~~I~~L~~~~~ 140 (143) ++||+||++.. T Consensus 161 ~~I~~La~~~~ 171 (176) T 3eop_A 161 DFVLSLEELEH 171 (176) T ss_dssp HHHHHGGGCC- T ss_pred HHHHHHHCCCC T ss_conf 99999877744 No 2 >1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein structure initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8 Probab=100.00 E-value=0 Score=427.84 Aligned_cols=142 Identities=67% Similarity=1.180 Sum_probs=139.3 Q ss_pred CCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCC Q ss_conf 97450011588667789985868887777765899999998538897899994588876348888604466677644567 Q gi|254781040|r 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITCTYPDPTAEQSS 80 (143) Q Consensus 1 M~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~ivgi~~v~~~~y~d~t~~~~p 80 (143) ++||||||||++|||+|+.++++++++||||||||||||||+||+||+||||||||+++|||+++|++++|||+|++++| T Consensus 2 ~~YWL~KsEP~~~siddl~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~vlfYHS~~~~~ivg~~~v~~~~ypd~t~~~~p 81 (155) T 1zce_A 2 ANYWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQARNNMRAMKIGDKGFFYHSNEGLDVVGIVEVCALSHPDSTAEGDL 81 (155) T ss_dssp CCEEEEEECTTTSCHHHHHHHGGGCEECCCCCCHHHHHHHHTCCTTCEEEEEETTTTCEEEEEEEEEEEEEECTTSTTCS T ss_pred CCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCC T ss_conf 86517631898789999986688877546714099999998526788899996389898258998730357987756787 Q ss_pred CEEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCC Q ss_conf 22798503221079975888984082011460100574550116899999999972799989 Q gi|254781040|r 81 CWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVCRMGKLSNPP 142 (143) Q Consensus 81 ~W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~~RLSV~PVt~~ew~~I~~L~~~~~p~ 142 (143) +|+||||+|+++|++||+|++||+++.|++|.|+||+||||+|||++||++||+|||+++|+ T Consensus 82 rW~~VdV~fv~kf~~pVsL~eLK~~~~L~~m~Lvk~~RLSV~PVt~~ew~~I~~L~g~~~~~ 143 (155) T 1zce_A 82 KWDCVDIRAVCDMPQPVSLKDVKANPKLEKMSLVTSMRLSVQPVTEEEYLEVCRMGGLANPP 143 (155) T ss_dssp SCEEEEEEEEEEEEEEEEHHHHHHCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHTTCSSCC T ss_pred CEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCHHCCCCCEEECCHHHHHHHHHHCCCCCCC T ss_conf 54799888723379853699985797721292301484570654999999999962999998 No 3 >2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris CGA009} SCOP: b.122.1.8 Probab=100.00 E-value=0 Score=425.92 Aligned_cols=140 Identities=58% Similarity=0.968 Sum_probs=136.0 Q ss_pred CCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCC Q ss_conf 97450011588667789985868887777765899999998538897899994588876348888604466677644567 Q gi|254781040|r 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITCTYPDPTAEQSS 80 (143) Q Consensus 1 M~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~ivgi~~v~~~~y~d~t~~~~p 80 (143) |+||||||||++|||||++++++++++||||||||||||||+|++||+||||||||+|+|||+++|++++|||+| +.+| T Consensus 1 maYWL~KsEP~~~siddl~~~~~~~~~WdGVRNyqARn~mr~M~~GD~~~fYHS~~~p~IvG~~~V~~~~~pd~t-~~~~ 79 (145) T 2gbs_A 1 VAYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNEGKEIVGIAEIIREAYPDPT-DASG 79 (145) T ss_dssp CCEEEEEECTTTSCHHHHHTTTTTCEECCCCCCHHHHHHHHHCCTTCEEEEEETTTTCEEEEEEEEEEEEEECTT-CTTS T ss_pred CCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCCCCC-CCCC T ss_conf 951621038987899999876898885667542999999986066888999862899871489876203668998-7766 Q ss_pred CEEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCC Q ss_conf 2279850322107997588898408201146010057455011689999999997279998 Q gi|254781040|r 81 CWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVCRMGKLSNP 141 (143) Q Consensus 81 ~W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~~RLSV~PVt~~ew~~I~~L~~~~~p 141 (143) +|++|||+|.++|++||+|++||.++.|++|.|+||+||||+|||++||++||+|||+..- T Consensus 80 ~w~~vdvk~~~~~~~pV~L~~lK~~~~L~~m~Llk~~RLSV~PVt~~ew~~I~~L~g~~~~ 140 (145) T 2gbs_A 80 KFVCVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLSVQPVTAEEWKLVCKMGGLLEH 140 (145) T ss_dssp CSEEEEEEEEEEEEEEEEHHHHHHCTTGGGSHHHHCTTCSSEEECHHHHHHHHHHTTCCCC T ss_pred CCEEEEEEECCCCCCCEEHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCHH T ss_conf 7667875668702564109997168652469521048866342799999999985497500 No 4 >2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.60A {Leishmania major} SCOP: b.122.1.8 Probab=100.00 E-value=0 Score=417.08 Aligned_cols=138 Identities=41% Similarity=0.674 Sum_probs=130.3 Q ss_pred CCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC-CCCEEEEEECCCCCCCCCCC-- Q ss_conf 974500115886677899858688877777658999999985388978999945888-76348888604466677644-- Q gi|254781040|r 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKG-REIVGIFEVITCTYPDPTAE-- 77 (143) Q Consensus 1 M~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~-~~ivgi~~v~~~~y~d~t~~-- 77 (143) |+||||||||++|||+|+..++ +++||||||||||||||+|++||+||||||||+ ++|||+++|++++|||+|++ T Consensus 19 m~YWL~KsEP~~~S~ddl~~~~--~~~WdGVRNyqArn~lr~Mk~GD~v~fYHS~~~~~~ivGi~~V~~~aypD~ta~D~ 96 (172) T 2ar1_A 19 IHYWLLKSEPHKFSIDDLAKQK--TSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDFTALDK 96 (172) T ss_dssp CCEEEEEECTTTSCHHHHHHHS--EEECCCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCT T ss_pred CCEEEECCCCCCCCHHHHHCCC--CCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCC T ss_conf 5466860588868899982158--97766714399999998655788899986388887489999985113578976677 Q ss_pred -----------CCCCEEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCC Q ss_conf -----------567227985032210799758889840820114601005745501168999999999727999 Q gi|254781040|r 78 -----------QSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVCRMGKLSN 140 (143) Q Consensus 78 -----------~~p~W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~~RLSV~PVt~~ew~~I~~L~~~~~ 140 (143) ++|+|+||||+|+++|++||+|++||+++.|++|.|||++||||+|||++||++||+||+... T Consensus 97 ~s~y~Dpks~~~~prW~~VdVk~v~kf~~pVtL~elK~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~L~~~~~ 170 (172) T 2ar1_A 97 TSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRRELQKMALFTQRRLSVQPVSASEYAYILRMNEEQQ 170 (172) T ss_dssp TSTTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHHHHTTCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHCCCCCCCCCEECCCCCCCEECCHHHHHHHHHHHCCCC T ss_conf 75534764545588757999998130588527999865956033943103767703259999999999756302 No 5 >2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A Probab=100.00 E-value=0 Score=407.67 Aligned_cols=137 Identities=42% Similarity=0.667 Sum_probs=129.7 Q ss_pred CCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC-CCCCEEEEEECCCCCCCCCCC-- Q ss_conf 97450011588667789985868887777765899999998538897899994588-876348888604466677644-- Q gi|254781040|r 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNK-GREIVGIFEVITCTYPDPTAE-- 77 (143) Q Consensus 1 M~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~-~~~ivgi~~v~~~~y~d~t~~-- 77 (143) |+||||||||++|||+|+.+++. +.||||||||||||||+|++||+|||||||| +++|||+++|++++|||+|++ T Consensus 1 M~YWL~KsEP~~~Siddl~~~~~--~~WdGVRNyqArn~lr~Mk~GD~v~fYHS~~~~~gIvGia~V~~~~~pD~t~~D~ 78 (157) T 2eve_A 1 MAYWLMKSEPDEFSISDLQRLGK--ARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDP 78 (157) T ss_dssp -CEEEEEECTTTSCHHHHHHHSE--EEECCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCT T ss_pred CCEEEEECCCCCCCHHHHHHCCC--CCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCC T ss_conf 96120105898589999987599--8777804499999997367788899996178988289999997612515755568 Q ss_pred -----------CCCCEEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCC-CCCCCCEEECCHHHHHHHHHHCCCC Q ss_conf -----------5672279850322107997588898408201146010-0574550116899999999972799 Q gi|254781040|r 78 -----------QSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILI-VSSRLSVQPVTTDEYLEVCRMGKLS 139 (143) Q Consensus 78 -----------~~p~W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Ll-k~~RLSV~PVt~~ew~~I~~L~~~~ 139 (143) ++|+|+||||+|+++|++||+|++||+++.|++|.|+ ||+||||+|||++||++||+|+.-. T Consensus 79 ~s~y~D~ks~~e~prw~~Vdv~~~~~l~~pv~L~elK~~~~L~~m~Lv~rg~RLSV~PVt~~ew~~I~~L~~~~ 152 (157) T 2eve_A 79 DSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQLEQLPLVQKGSRLSVMPVTAEQWAAILALRLEH 152 (157) T ss_dssp TSTTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHHHHHTCGGGTTCGGGSTTCCCSEEEECHHHHHHHHHHHC-- T ss_pred CCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH T ss_conf 76522675544578647999986011277338999744925043832114787685446999999999876544 No 6 >2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii} Probab=99.94 E-value=2.6e-28 Score=188.78 Aligned_cols=126 Identities=21% Similarity=0.413 Sum_probs=103.0 Q ss_pred CCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC------CCCEEEEEECCCCCCCC Q ss_conf 974500115886677899858688877777658999999985388978999945888------76348888604466677 Q gi|254781040|r 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKG------REIVGIFEVITCTYPDP 74 (143) Q Consensus 1 M~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~------~~ivgi~~v~~~~y~d~ 74 (143) |+|||++++|+.|++... . ..| |+ ||||||+||.||+||.+|||||++. +.+||+++|++++|+|+ T Consensus 4 m~YWl~~~~~d~~~~~~~-~-----~i~-g~-~~~~r~~l~rmk~GD~v~fY~s~~~~~~~~~~~~vg~~~V~~~~~~d~ 75 (147) T 2p5d_A 4 MAYWLCITNEDNWKVIKE-K-----KIW-GV-AERYKNTINKVKVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKDS 75 (147) T ss_dssp CCEEEEEECHHHHHHHHH-H-----CEE-EE-CGGGHHHHTTCCTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEECC T ss_pred EEEEEEECCHHHHHHHHC-C-----CEE-EE-CHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCC T ss_conf 324412078999767634-8-----568-40-888878997378888899998156788875616999999935750189 Q ss_pred CC--------CCCCCEEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCCC---CCCEEECCHHHHHHHHH Q ss_conf 64--------45672279850322107997588898408201146010057---45501168999999999 Q gi|254781040|r 75 TA--------EQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSS---RLSVQPVTTDEYLEVCR 134 (143) Q Consensus 75 t~--------~~~p~W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~~---RLSV~PVt~~ew~~I~~ 134 (143) |. .+.++|++|+++++..|..||+|.+|+..-.+-.....-+. +.|+.||++++|+.|++ T Consensus 76 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~v~l~~l~~~L~fi~~~~~w~~~~r~~~~~~I~~~Df~~I~~ 146 (147) T 2p5d_A 76 SKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSGHLMGKAMREIPEEDYKLIVG 146 (147) T ss_dssp CCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC--CCCSEEEECHHHHHHHHT T ss_pred CCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCEECCHHHHHHHHC T ss_conf 86776611167887789999786322378755999887777522777641533258742669999999853 No 7 >2hd9_A UPF0310 protein PH1033; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii OT3} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A Probab=97.86 E-value=9.9e-07 Score=60.09 Aligned_cols=119 Identities=18% Similarity=0.308 Sum_probs=72.6 Q ss_pred CCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC--------CCCEEEEEECCCCCC Q ss_conf 974500115886677899858688877777658999999985388978999945888--------763488886044666 Q gi|254781040|r 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKG--------REIVGIFEVITCTYP 72 (143) Q Consensus 1 M~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~--------~~ivgi~~v~~~~y~ 72 (143) |+|||.=+..+-+-+- ...+- -...+|- ++-++.||+||.++||-++.. ..++|+++|.++.+. T Consensus 1 m~YWi~v~s~e~~~~~--~~~g~-~~v~~~k-----~~~l~rikpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~ 72 (145) T 2hd9_A 1 MTYWICITNRENWEVI--KRHNV-WGVPKKH-----KNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145) T ss_dssp CCEEEEEECHHHHHHH--HHHCE-EEECGGG-----HHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE T ss_pred CEEEEEECCHHHHHHH--HHCCE-EEECCCC-----CCHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCEE T ss_conf 9069985689999999--86977-8607775-----02775378998899996651358887456369999998576561 Q ss_pred CCCCC----CCCC---EEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCCC--------CCCEEECCHHHHHHHHH Q ss_conf 77644----5672---279850322107997588898408201146010057--------45501168999999999 Q gi|254781040|r 73 DPTAE----QSSC---WECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSS--------RLSVQPVTTDEYLEVCR 134 (143) Q Consensus 73 d~t~~----~~p~---W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~~--------RLSV~PVt~~ew~~I~~ 134 (143) |.+.- ..+. =+-+++++.... +|++..|. ..+..++.. |-.+.+++++.|+.|.+ T Consensus 73 d~~~i~~~~~~~~~~~p~R~~v~~~~~~--~v~i~~l~-----~~L~Fi~~k~~w~~~~~r~g~~~I~~~Df~~I~~ 142 (145) T 2hd9_A 73 DFSRIFKPHRGGKETYPYRVKIKPIKIG--EINFKPLI-----NDLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEK 142 (145) T ss_dssp CCCCCSCCTTSSCCCCCEEEEEEEEEEE--EEESGGGG-----GGCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHH T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECC--CEEHHHHH-----HHHHEEECCHHCCHHHHCCCCEECCHHHHHHHHH T ss_conf 2675564323677617899982130037--42578954-----1122062701203466567754659999999999 No 8 >2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} Probab=85.36 E-value=0.85 Score=24.70 Aligned_cols=58 Identities=17% Similarity=0.385 Sum_probs=41.1 Q ss_pred HHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCC---------------------------------CCCCCCEEEEEC Q ss_conf 85388978999945888763488886044666776---------------------------------445672279850 Q gi|254781040|r 41 RKMRVGDKGFFYHSNKGREIVGIFEVITCTYPDPT---------------------------------AEQSSCWECVDI 87 (143) Q Consensus 41 r~Mk~GD~~~fYHS~~~~~ivgi~~v~~~~y~d~t---------------------------------~~~~p~W~~VdV 87 (143) +..+.|-.++||-|....|.||-|+|-+-...+.. ....+.|.+..+ T Consensus 57 k~l~pGMKviFYaS~Ed~G~~GEA~Ik~V~~~~~~~ei~ekyGd~vFLTkEE~k~Y~kd~~rw~~r~~~~rkrpWmvi~L 136 (161) T 2kku_A 57 KELKPGMKFVFYQSHEDTGFVGEARIKRVVLSENPMQFFETFGDRVFLTKDELKEYMKSQERWGRRRESKKKKLWMAIEL 136 (161) T ss_dssp TTCCTTEEEEECCCSTTCBCCEEEEEEEEEEESCTHHHHHHTSTTBSSCHHHHHHHHHHHHHTSSCCCCSSCCCEEEEEE T ss_pred HHHCCCCEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE T ss_conf 76188848999972133550524899998850798999998386055179999999875232476566666785699994 Q ss_pred HHHCCCCCCCC Q ss_conf 32210799758 Q gi|254781040|r 88 CAVCSMPCPVS 98 (143) Q Consensus 88 k~~~~l~~pVs 98 (143) +-+++.+++|- T Consensus 137 e~IrKY~rvvK 147 (161) T 2kku_A 137 EDVKKYDKPIK 147 (161) T ss_dssp EEEEECCSCBC T ss_pred CCCHHCCCCCC T ss_conf 25000676578 No 9 >2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=64.62 E-value=4 Score=20.67 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=72.7 Q ss_pred CCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECC-CCCCCEEEEEECCCCCCCCCCC-CC Q ss_conf 745001158866778998586888777776589999999853889789999458-8876348888604466677644-56 Q gi|254781040|r 2 AYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSN-KGREIVGIFEVITCTYPDPTAE-QS 79 (143) Q Consensus 2 ~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~-~~~~ivgi~~v~~~~y~d~t~~-~~ 79 (143) +|.++|| ++.++...+.+. ..|-=.+ ...+...++.+.++.|++.-|. .-..-.|.|+.++..-.+.+.. .+ T Consensus 9 RfFiIKS----~~~~nv~~s~~~-gvW~t~~-~~~~~L~~Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~~~~~~w~~ 82 (141) T 2yu6_A 9 RYFIMKS----SNLRNLEISQQK-GIWSTTP-SNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGS 82 (141) T ss_dssp EEEEEEE----SSSHHHHHHHHT-CEEECCT-TSHHHHHHHHHHSSCEEEEEEESSSSEECEEEEECSCSSSCCCCCCSC T ss_pred EEEEEEE----CCHHHHHHHHHC-CEEECCC-CCHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCH T ss_conf 7999973----988999999975-9973142-317999999975898899999767662478998704789866775002 Q ss_pred CCEE-EEECHHHCCCCCCCCHHHHHCCC-CCCCCCCCCCCCCCEEECCHHHHHHHHHH Q ss_conf 7227-98503221079975888984082-01146010057455011689999999997 Q gi|254781040|r 80 SCWE-CVDICAVCSMPCPVSLMAIKANP-RLSSMILIVSSRLSVQPVTTDEYLEVCRM 135 (143) Q Consensus 80 p~W~-~VdVk~~~~l~~pVsL~~lK~~~-~L~~m~Llk~~RLSV~PVt~~ew~~I~~L 135 (143) .+|. ...|+-+. ...|+-..++... .+-+..-|+.+| ..|-|+++....+|+| T Consensus 83 ~~~~g~F~V~Wl~--~~~lpf~~~~hl~n~~N~nk~V~~sR-DgqEi~~~~G~~ll~i 137 (141) T 2yu6_A 83 AGLGGVFKVEWIR--KESLPFQFAHHLLNPWNDNKKVQISR-DGQELEPQVGEQLLQL 137 (141) T ss_dssp SCCCCEEEEEEEE--CSCEEHHHHTSCEETTSTTEETTCCC-TTEEECTTHHHHHHGG T ss_pred HCCCCCEEEEEEE--EECCCHHHHCCCCCCCCCCCEEEECC-CCEEECHHHHHHHHHH T ss_conf 1248960689998--01168388330015678996672155-8774099999999998 No 10 >3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Probab=63.46 E-value=4.5 Score=20.39 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=20.6 Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 777658999999985388978999945888 Q gi|254781040|r 28 WTGVRNYQARNNMRKMRVGDKGFFYHSNKG 57 (143) Q Consensus 28 WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~ 57 (143) -+++++--.+ +.+..+.||.++||.||-+ T Consensus 57 r~~i~~al~~-l~~~~~~~D~v~~yfSGHG 85 (285) T 3bij_A 57 RAKVIDAIGK-AAKALGKGDIFMLSYSGHG 85 (285) T ss_dssp HHHHHHHHHH-HHHHCCTTCEEEEEEESCE T ss_pred HHHHHHHHHH-HHHHCCCCCEEEEEECCCC T ss_conf 9999999999-9985889988999984753 No 11 >2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: UNL; 1.05A {Anabaena variabilis atcc 29413} PDB: 2evr_A 2fg0_A Probab=54.98 E-value=6.6 Score=19.38 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=14.6 Q ss_pred HHHCCCCCEEEEEECCCCCCCEEEE Q ss_conf 9853889789999458887634888 Q gi|254781040|r 40 MRKMRVGDKGFFYHSNKGREIVGIF 64 (143) Q Consensus 40 lr~Mk~GD~~~fYHS~~~~~ivgi~ 64 (143) ..++++||++||- +...++=|||+ T Consensus 158 ~~~~~pGDLiF~~-~~~~~~HVgIy 181 (235) T 2hbw_A 158 IDELAPGDLVFFG-TPVKATHVGLY 181 (235) T ss_dssp GGGCCTTCEEEEE-CSSCEEEEEEE T ss_pred HHHCCCCCEEEEC-CCCCCCEEEEE T ss_conf 7767877678866-99999889999 No 12 >3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family protein, structural genomics, joint center for structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987} Probab=54.11 E-value=10 Score=18.32 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=5.8 Q ss_pred CCCCCCHHHHHHH Q ss_conf 7776589999999 Q gi|254781040|r 28 WTGVRNYQARNNM 40 (143) Q Consensus 28 WdGVRNyqArn~l 40 (143) |-..-+|..|--| T Consensus 42 w~~~~~~~~~~~~ 54 (311) T 3h41_A 42 WTKSMTLDEKLWL 54 (311) T ss_dssp HHHHCCHHHHHHH T ss_pred HHHHCCHHHHHCC T ss_conf 9874999897234 No 13 >3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp} Probab=53.37 E-value=7.3 Score=19.14 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=13.1 Q ss_pred HHCCCCCEEEEEECCCCCCCEEE Q ss_conf 85388978999945888763488 Q gi|254781040|r 41 RKMRVGDKGFFYHSNKGREIVGI 63 (143) Q Consensus 41 r~Mk~GD~~~fYHS~~~~~ivgi 63 (143) .++++||++||-- + .+.=||| T Consensus 88 ~~~~pGDLvff~~-~-~~~HVgI 108 (142) T 3gt2_A 88 QQARKGDLIFYGP-E-GTQSVAM 108 (142) T ss_dssp GGCCTTCEEEESG-G-GCSEEEE T ss_pred CCCCCCEEEEECC-C-CCCEEEE T ss_conf 5799981899569-9-9988999 No 14 >3i86_A Putative uncharacterized protein; alpha and beta protein, hypothetical cysteine protease, HYDR; 2.40A {Mycobacterium avium subsp} Probab=53.17 E-value=7.4 Score=19.11 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=13.4 Q ss_pred HHCCCCCEEEEEECCCCCCCEEEE Q ss_conf 853889789999458887634888 Q gi|254781040|r 41 RKMRVGDKGFFYHSNKGREIVGIF 64 (143) Q Consensus 41 r~Mk~GD~~~fYHS~~~~~ivgi~ 64 (143) .++++||++||. ++ ...-|||. T Consensus 84 ~~~~pGDLvff~-~~-~~~HVgiy 105 (141) T 3i86_A 84 DQARRGDLIFYG-PG-GSQHVTMY 105 (141) T ss_dssp GGCCTTCEEEES-GG-GCSEEEEE T ss_pred CCCCCCCEEEEC-CC-CCCEEEEE T ss_conf 558998689975-89-99988999 No 15 >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} Probab=45.26 E-value=6.4 Score=19.47 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=10.9 Q ss_pred CEEEEEECCCCCCC Q ss_conf 78999945888763 Q gi|254781040|r 47 DKGFFYHSNKGREI 60 (143) Q Consensus 47 D~~~fYHS~~~~~i 60 (143) -.+.|||.+|+--+ T Consensus 3 ~KaiFYHAGCpVCV 16 (80) T 2k8s_A 3 SKAIFYHAGCPVCV 16 (80) T ss_dssp EEEEEEECSCHHHH T ss_pred CEEEEEECCCCEEH T ss_conf 51378736997443 No 16 >3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 2xiv_A* Probab=43.79 E-value=13 Score=17.71 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=13.4 Q ss_pred HHCCCCCEEEEEECCCCCCCEEEE Q ss_conf 853889789999458887634888 Q gi|254781040|r 41 RKMRVGDKGFFYHSNKGREIVGIF 64 (143) Q Consensus 41 r~Mk~GD~~~fYHS~~~~~ivgi~ 64 (143) .+++.||++||.-+ ...=|||. T Consensus 157 ~~~~pGDLvff~~~--~~~HVgIy 178 (214) T 3ne0_A 157 SQMRRGDVIFYGPN--GSQHVTIY 178 (214) T ss_dssp GGCCTTCEEEESGG--GCSEEEEE T ss_pred CCCCCCEEEEECCC--CCCEEEEE T ss_conf 78999718995699--99879999 No 17 >2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=41.18 E-value=20 Score=16.53 Aligned_cols=128 Identities=9% Similarity=0.076 Sum_probs=77.2 Q ss_pred CCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECC-CCCCCEEEEEECCCCCCCCCCC--- Q ss_conf 745001158866778998586888777776589999999853889789999458-8876348888604466677644--- Q gi|254781040|r 2 AYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSN-KGREIVGIFEVITCTYPDPTAE--- 77 (143) Q Consensus 2 ~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~-~~~~ivgi~~v~~~~y~d~t~~--- 77 (143) +|.++|| ++.++...+.+. ..|- .....-+...++.+.++.|++.-|. .-..-.|.|+.++..-++.+.. T Consensus 27 RfFIIKS----~n~~nv~~S~~~-gvWa-t~~~n~~~L~~Af~~~~~V~L~FSVn~Sg~F~G~A~M~S~~~~~~~~~~W~ 100 (180) T 2yud_A 27 RFFLIKS----NNHENVSLAKAK-GVWS-TLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWV 100 (180) T ss_dssp EEEEEEE----SCHHHHHHHHHH-TEEC-CCHHHHHHHHHHHHHSSCEEEEEEETTTSEEEEEEEEEEEEECSSCCCCCC T ss_pred EEEEEEC----CCHHHHHHHHHC-CEEE-CCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCC T ss_conf 7999973----988999999876-9862-245426999999962698899999867773478999704577787764221 Q ss_pred -----CCCCEE-EEECHHHCCCCCCCCHHHHHCCCC-CCCCCCCCCCCCCEEECCHHHHHHHHHHCCC Q ss_conf -----567227-985032210799758889840820-1146010057455011689999999997279 Q gi|254781040|r 78 -----QSSCWE-CVDICAVCSMPCPVSLMAIKANPR-LSSMILIVSSRLSVQPVTTDEYLEVCRMGKL 138 (143) Q Consensus 78 -----~~p~W~-~VdVk~~~~l~~pVsL~~lK~~~~-L~~m~Llk~~RLSV~PVt~~ew~~I~~L~~~ 138 (143) +..+|. .-.|+-+.. ..|+-..++...- +-+..-|+.+| -.|-|+++....+|+|=.- T Consensus 101 ~~~~~~~~~~~g~F~VeWl~~--~~lpf~~~~hl~N~~N~nkpV~~sR-DgqEI~~~~G~~L~~lF~~ 165 (180) T 2yud_A 101 LPAGMSAKMLGGVFKIDWICR--RELPFTKSAHLTNPWNEHKPVKIGR-DGQEIELECGTQLCLLFPP 165 (180) T ss_dssp CCSSCCGGGGCSEEEEEEEEC--SCEEHHHHTTCCBTTTTSBCTTSCC-TTEEECHHHHHHHHHHSCC T ss_pred CCCCCCCCCCCCCEEEEEEEE--EECCCHHHCCCCCCCCCCCEEEECC-CCEEECHHHHHHHHHHCCC T ss_conf 347643000489657899997--6268078501326436895688478-9777089999999996036 No 18 >2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A Probab=37.44 E-value=20 Score=16.56 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=14.3 Q ss_pred HHCCCCCEEEEEECCCCCCCEEEE Q ss_conf 853889789999458887634888 Q gi|254781040|r 41 RKMRVGDKGFFYHSNKGREIVGIF 64 (143) Q Consensus 41 r~Mk~GD~~~fYHS~~~~~ivgi~ 64 (143) .++++||++||.- +....=|||+ T Consensus 66 ~~~~pGDlvff~~-~~~~~HVgIy 88 (136) T 2jyx_A 66 SNLRTGDLVLFRA-GSTGRHVGIY 88 (136) T ss_dssp TTCCTTEEEEEEC-SSSSEEEEEE T ss_pred CCCCCCCEEEECC-CCCCEEEEEE T ss_conf 5689998999798-9997189999 Done!