Query gi|254781040|ref|YP_003065453.1| hypothetical protein CLIBASIA_04710 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 143
No_of_seqs 126 out of 1227
Neff 5.6
Searched_HMMs 13730
Date Wed Jun 1 11:10:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781040.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zcea1 b.122.1.8 (A:2-147) Hy 100.0 0 0 434.0 10.4 141 2-142 2-142 (146)
2 d2gbsa1 b.122.1.8 (A:2-137) Hy 100.0 0 0 421.7 10.5 136 2-138 1-136 (136)
3 d2evea1 b.122.1.8 (A:2-149) Hy 100.0 0 0 409.5 9.9 132 2-135 1-147 (148)
4 d2ar1a1 b.122.1.8 (A:7-163) Hy 100.0 0 0 407.2 9.1 137 1-139 5-155 (157)
5 d2hd9a1 b.122.1.8 (A:1-145) Hy 97.7 3.1E-06 2.3E-10 55.7 0.1 120 1-135 1-143 (145)
6 d2evra2 d.3.1.16 (A:87-234) Ce 59.6 2.8 0.0002 20.2 2.5 23 41-64 72-94 (148)
7 d1oe1a2 b.6.1.3 (A:160-336) Ni 25.3 15 0.0011 15.9 1.7 41 27-67 54-99 (177)
8 d2bw4a2 b.6.1.3 (A:166-338) Ni 24.1 15 0.0011 15.8 1.6 41 27-67 54-99 (173)
9 d1xjva2 b.40.4.3 (A:149-299) P 22.3 17 0.0012 15.5 1.5 47 3-54 45-96 (151)
10 d1r3ea1 b.122.1.1 (A:238-318) 18.6 29 0.0021 14.1 2.4 39 28-72 22-60 (81)
No 1
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=100.00 E-value=0 Score=434.01 Aligned_cols=141 Identities=67% Similarity=1.190 Sum_probs=139.0
Q ss_pred CCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 74500115886677899858688877777658999999985388978999945888763488886044666776445672
Q gi|254781040|r 2 AYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITCTYPDPTAEQSSC 81 (143)
Q Consensus 2 ~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~ivgi~~v~~~~y~d~t~~~~p~ 81 (143)
+||||||||++|||+|++.+++++++||||||||||||||+||+||+||||||||+++|||+++|++++|+|+|++++|+
T Consensus 2 nYWL~KsEP~~~s~~dl~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~ffYHS~~~~~ivg~~~v~~~~y~d~t~~~~pr 81 (146)
T d1zcea1 2 NYWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQARNNMRAMKIGDKGFFYHSNEGLDVVGIVEVCALSHPDSTAEGDLK 81 (146)
T ss_dssp CEEEEEECTTTSCHHHHHHHGGGCEECCCCCCHHHHHHHHTCCTTCEEEEEETTTTCEEEEEEEEEEEEEECTTSTTCSS
T ss_pred CEEEEECCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 64078428987899999865888886567250999999996537888999951899882689951245578867577987
Q ss_pred EEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCC
Q ss_conf 2798503221079975888984082011460100574550116899999999972799989
Q gi|254781040|r 82 WECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVCRMGKLSNPP 142 (143)
Q Consensus 82 W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~~RLSV~PVt~~ew~~I~~L~~~~~p~ 142 (143)
|+||||+|+++|+++|+|++||+++.|++|.|+||+||||||||++||++||+|||+++|+
T Consensus 82 W~~VdV~~v~~~~~~VsL~eLK~~~~L~~m~Lvk~~RLSV~PVt~~ew~~I~~Lag~~~p~ 142 (146)
T d1zcea1 82 WDCVDIRAVCDMPQPVSLKDVKANPKLEKMSLVTSMRLSVQPVTEEEYLEVCRMGGLANPP 142 (146)
T ss_dssp CEEEEEEEEEEEEEEEEHHHHHHCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHTTCSSCC
T ss_pred EEEEEEEEECCCCCEEEHHHHHCCCCHHHCCCHHCCCCCEEECCHHHHHHHHHHCCCCCCC
T ss_conf 5899888602369612299962676652196611382374966999999999962999998
No 2
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=100.00 E-value=0 Score=421.69 Aligned_cols=136 Identities=60% Similarity=0.998 Sum_probs=132.9
Q ss_pred CCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 74500115886677899858688877777658999999985388978999945888763488886044666776445672
Q gi|254781040|r 2 AYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITCTYPDPTAEQSSC 81 (143)
Q Consensus 2 ~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~ivgi~~v~~~~y~d~t~~~~p~ 81 (143)
+||||||||++|||||++++++++++||||||||||||||+|++||+||||||||+++|||+++|++++|||+| +++|+
T Consensus 1 aYWL~KsEP~~~siddl~~~~~~~~~WdGVRNyqArn~mr~M~~GD~~~fYHS~~~~~ivg~~~v~~~~~pd~t-~~~p~ 79 (136)
T d2gbsa1 1 AYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNEGKEIVGIAEIIREAYPDPT-DASGK 79 (136)
T ss_dssp CEEEEEECTTTSCHHHHHTTTTTCEECCCCCCHHHHHHHHHCCTTCEEEEEETTTTCEEEEEEEEEEEEEECTT-CTTSC
T ss_pred CCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCCCC-CCCCC
T ss_conf 91025148987899999875898885777164999999997515778999853888886799754411467866-66667
Q ss_pred EEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC
Q ss_conf 279850322107997588898408201146010057455011689999999997279
Q gi|254781040|r 82 WECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVCRMGKL 138 (143)
Q Consensus 82 W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~~RLSV~PVt~~ew~~I~~L~~~ 138 (143)
|++|||+|+++|++||+|++||+++.|++|.|+||+||||+|||++||++||+|||+
T Consensus 80 w~~Vdvk~~~~~~~~V~L~~lK~~~~L~~m~Llk~~RLSV~PVt~~ew~~I~~L~g~ 136 (136)
T d2gbsa1 80 FVCVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLSVQPVTAEEWKLVCKMGGL 136 (136)
T ss_dssp SEEEEEEEEEEEEEEEEHHHHHHCTTGGGSHHHHCTTCSSEEECHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCCCCCEEHHHHHCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHCCC
T ss_conf 465605547706760609997356540348521248730334799999999986298
No 3
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=100.00 E-value=0 Score=409.52 Aligned_cols=132 Identities=42% Similarity=0.704 Sum_probs=126.2
Q ss_pred CCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC-CCCCEEEEEECCCCCCCCCC----
Q ss_conf 7450011588667789985868887777765899999998538897899994588-87634888860446667764----
Q gi|254781040|r 2 AYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNK-GREIVGIFEVITCTYPDPTA---- 76 (143)
Q Consensus 2 ~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~-~~~ivgi~~v~~~~y~d~t~---- 76 (143)
+||||||||++|||+|+++++. ++||||||||||||||+|++||+|||||||| +++||||++|++++|||+|+
T Consensus 1 AYWL~KsEP~~~s~~dl~~~~~--~~WdGVRNyqArn~lr~M~~GD~~~fYHS~~~~~~IvGia~V~~~aypDpt~~d~~ 78 (148)
T d2evea1 1 AYWLMKSEPDEFSISDLQRLGK--ARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPD 78 (148)
T ss_dssp CEEEEEECTTTSCHHHHHHHSE--EEECCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCTT
T ss_pred CCEEECCCCCCCCHHHHHHCCC--CCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 9201515888589999986499--87667067999999986336788999963888872278999987201247655687
Q ss_pred ---------CCCCCEEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCC-CCCCCCEEECCHHHHHHHHHH
Q ss_conf ---------45672279850322107997588898408201146010-057455011689999999997
Q gi|254781040|r 77 ---------EQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILI-VSSRLSVQPVTTDEYLEVCRM 135 (143)
Q Consensus 77 ---------~~~p~W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Ll-k~~RLSV~PVt~~ew~~I~~L 135 (143)
+++|+|+||||+|+++|++||+|++||+++.|++|.|+ |||||||||||++||++||+|
T Consensus 79 s~y~D~ks~~e~prw~~Vdv~~~~~~~~~vtL~elK~~~~l~~m~Lv~kgsRLSV~PVt~~ew~~I~~L 147 (148)
T d2evea1 79 SHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQLEQLPLVQKGSRLSVMPVTAEQWAAILAL 147 (148)
T ss_dssp STTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHHHHHTCGGGTTCGGGSTTCCCSEEEECHHHHHHHHHH
T ss_pred CCEECCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCEECCCCCCCEEECCHHHHHHHHCC
T ss_conf 763316654678973699987300058862499985395614483032578667665699999999717
No 4
>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870 {Leishmania major [TaxId: 5664]}
Probab=100.00 E-value=0 Score=407.19 Aligned_cols=137 Identities=42% Similarity=0.677 Sum_probs=129.6
Q ss_pred CCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC-CCCEEEEEECCCCCCCCCCC--
Q ss_conf 974500115886677899858688877777658999999985388978999945888-76348888604466677644--
Q gi|254781040|r 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKG-REIVGIFEVITCTYPDPTAE-- 77 (143)
Q Consensus 1 M~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~-~~ivgi~~v~~~~y~d~t~~-- 77 (143)
|+||||||||++|||+|+.+++ +++||||||||||||||+|++||+||||||||+ ++|+|+++|++++|||+|++
T Consensus 5 m~YWL~KsEP~~ys~~dl~~~~--~~~WdGVrN~qArn~lr~Mk~GD~~~fYHS~~~~~~i~g~~~v~~~~~pd~t~~d~ 82 (157)
T d2ar1a1 5 IHYWLLKSEPHKFSIDDLAKQK--TSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDFTALDK 82 (157)
T ss_dssp CCEEEEEECTTTSCHHHHHHHS--EEECCCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCT
T ss_pred CEEEEEECCCCCCCHHHHHHHC--CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 6167883188758899995408--87766720199999998675788899997488887157999983244677654567
Q ss_pred -----------CCCCEEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCC
Q ss_conf -----------56722798503221079975888984082011460100574550116899999999972799
Q gi|254781040|r 78 -----------QSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVCRMGKLS 139 (143)
Q Consensus 78 -----------~~p~W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~~RLSV~PVt~~ew~~I~~L~~~~ 139 (143)
++|+|+||||+|+++|++||+|++||+++.|++|.||||+||||||||++||++||+||+..
T Consensus 83 ~s~y~Dpks~~~~p~w~~VdV~~v~~~~~pVtL~eLK~~~~L~~m~Llr~~RLSV~PVt~~ew~~I~~L~~~~ 155 (157)
T d2ar1a1 83 TSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRRELQKMALFTQRRLSVQPVSASEYAYILRMNEEQ 155 (157)
T ss_dssp TSTTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHHHHTTCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHCCCCCCCCCEEECCCCCEEECCHHHHHHHHHHHCCC
T ss_conf 7652276455678866899999702208962799974584602295752286654555999999999986444
No 5
>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=97.66 E-value=3.1e-06 Score=55.71 Aligned_cols=120 Identities=20% Similarity=0.406 Sum_probs=74.9
Q ss_pred CCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC--------CCCEEEEEECCCCCC
Q ss_conf 974500115886677899858688877777658999999985388978999945888--------763488886044666
Q gi|254781040|r 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKG--------REIVGIFEVITCTYP 72 (143)
Q Consensus 1 M~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~--------~~ivgi~~v~~~~y~ 72 (143)
|+|||.=+..+-+-+-- ..+ .| || +...+|-++.|++||.++||-++.. ..++|+++|.++.|.
T Consensus 1 MtYWi~v~s~e~~~~~~--~~g----~~-~~-~~~k~~~~~rikpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~ 72 (145)
T d2hd9a1 1 MTYWICITNRENWEVIK--RHN----VW-GV-PKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CCEEEEEECHHHHHHHH--HHC----EE-EE-CGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred CCEEEEECCHHHHHHHH--HCC----EE-EC-CCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCEE
T ss_conf 92489747899999998--688----88-61-577630685378999999996763457886556379999999144320
Q ss_pred CCCCC----CCCC---EEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCCC--------CCCEEECCHHHHHHHHHH
Q ss_conf 77644----5672---279850322107997588898408201146010057--------455011689999999997
Q gi|254781040|r 73 DPTAE----QSSC---WECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSS--------RLSVQPVTTDEYLEVCRM 135 (143)
Q Consensus 73 d~t~~----~~p~---W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~~--------RLSV~PVt~~ew~~I~~L 135 (143)
|.|.- +... =+-++|++.... +|++..|. ..|..++.. |--+.++++..++.|.+.
T Consensus 73 d~t~i~~~~~~~~~~~P~R~~v~~~~~~--ev~i~~l~-----~~L~fi~~k~~W~~y~~r~g~~~I~~~D~~lI~~~ 143 (145)
T d2hd9a1 73 DFSRIFKPHRGGKETYPYRVKIKPIKIG--EINFKPLI-----NDLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEKL 143 (145)
T ss_dssp CCCCCSCCTTSSCCCCCEEEEEEEEEEE--EEESGGGG-----GGCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECC--CCCHHHHH-----HHHHHHCCCHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 2661466533578647899984786406--52088978-----67776328443537776477634698999999997
No 6
>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]}
Probab=59.56 E-value=2.8 Score=20.23 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=15.1
Q ss_pred HHCCCCCEEEEEECCCCCCCEEEE
Q ss_conf 853889789999458887634888
Q gi|254781040|r 41 RKMRVGDKGFFYHSNKGREIVGIF 64 (143)
Q Consensus 41 r~Mk~GD~~~fYHS~~~~~ivgi~ 64 (143)
.++++||++||..++ .+.=|||.
T Consensus 72 ~~l~pGDLvFf~~~~-~~~HVgIy 94 (148)
T d2evra2 72 AELVAGDLVFFGTSQ-KATHVGLY 94 (148)
T ss_dssp GGCCTTCEEEEECSS-CEEEEEEE
T ss_pred CCCCCCEEEEECCCC-CCCEEEEE
T ss_conf 135764067756999-99885899
No 7
>d1oe1a2 b.6.1.3 (A:160-336) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}
Probab=25.32 E-value=15 Score=15.89 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=26.4
Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCC-----CEEEEEEC
Q ss_conf 777765899999998538897899994588876-----34888860
Q gi|254781040|r 27 AWTGVRNYQARNNMRKMRVGDKGFFYHSNKGRE-----IVGIFEVI 67 (143)
Q Consensus 27 ~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~-----ivgi~~v~ 67 (143)
+-.|--+-....+-...|+|+.|.||||+.... |-++++.+
T Consensus 54 vFNG~~galt~~~~l~akvGe~Vri~~~~~N~~ssfHlIG~hfD~V 99 (177)
T d1oe1a2 54 VFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWV 99 (177)
T ss_dssp EETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCEEETTCCEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCCCEE
T ss_conf 9888446566888852541884999806899885534513402068
No 8
>d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}
Probab=24.11 E-value=15 Score=15.79 Aligned_cols=41 Identities=17% Similarity=0.356 Sum_probs=25.7
Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCC----CE-EEEEEC
Q ss_conf 777765899999998538897899994588876----34-888860
Q gi|254781040|r 27 AWTGVRNYQARNNMRKMRVGDKGFFYHSNKGRE----IV-GIFEVI 67 (143)
Q Consensus 27 ~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~----iv-gi~~v~ 67 (143)
+-.|=-+.+...+-...|+|++|+|.||+.... ++ ++++++
T Consensus 54 vFNG~v~altg~~~l~akvGErV~i~~~~~n~~s~fHliG~hFD~V 99 (173)
T d2bw4a2 54 VFNGAVGALTGDHALTAAVGERVLVVHSQANRDTRPHLIGGHGDYV 99 (173)
T ss_dssp EETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCEEEETCCEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCEEEEE
T ss_conf 9889765013456741420776999806888776516635246898
No 9
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.35 E-value=17 Score=15.54 Aligned_cols=47 Identities=15% Similarity=0.062 Sum_probs=26.6
Q ss_pred CCEECCCCCCCCHHH--HHHCCC---CCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 450011588667789--985868---8877777658999999985388978999945
Q gi|254781040|r 3 YWLVKSEPSEWSWKM--QQDKGR---VGEAWTGVRNYQARNNMRKMRVGDKGFFYHS 54 (143)
Q Consensus 3 yWL~KsEP~~~s~~~--~~~~~~---~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS 54 (143)
+|...-||+...-+. ....++ +.+.|| |+-+ +.|+.|+||.+.+|-=
T Consensus 45 ~~~~~~e~~~~~gd~~~~~~~~~l~i~V~lyD---~H~~--~ar~lK~GdfV~l~NV 96 (151)
T d1xjva2 45 SWRVLIQDLVLEGDLSHIHRLQNLTIDILVYD---NHVH--VARSLKVGSFLRIYSL 96 (151)
T ss_dssp BCCCCCCSSCCEECHHHHHHHGGGSEEEEEET---THHH--HHHHCCTTCEEEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEEEEEEC---CHHH--HHHHCCCCCEEEEEEE
T ss_conf 75234688654242213456761699999987---6188--8963788988999988
No 10
>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=18.58 E-value=29 Score=14.11 Aligned_cols=39 Identities=5% Similarity=0.031 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCC
Q ss_conf 777658999999985388978999945888763488886044666
Q gi|254781040|r 28 WTGVRNYQARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITCTYP 72 (143)
Q Consensus 28 WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~ivgi~~v~~~~y~ 72 (143)
=.||-.+. ..+.||.|..+..+...-.+|.+...++.-.
T Consensus 22 ~pGI~~~d------~~~~Gd~V~I~~~~g~~iaiG~a~~~S~ei~ 60 (81)
T d1r3ea1 22 LEMLKEWD------GFKKGEVVRVFNEEGRLLALAEAERNSSFLE 60 (81)
T ss_dssp SSSCCEEC------CCCTTCEEEEECSSSCEEEEEEESSCTTCCC
T ss_pred CCCCEEEC------CCCCCCEEEEEECCCCEEEEEEEECCHHHHH
T ss_conf 54204542------1279998999937997789999832999999
Done!