RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781040|ref|YP_003065453.1| hypothetical protein CLIBASIA_04710 [Candidatus Liberibacter asiaticus str. psy62] (143 letters) >1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein structure initiative; 1.30A {Agrobacterium tumefaciens str} (A:) Length = 155 Score = 190 bits (484), Expect = 7e-50 Identities = 89/142 (62%), Positives = 105/142 (73%) Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60 YWL KSEP +WSW+ Q+ KG GE WTGVRNYQARNN R ++GDKGFFYHSN+G ++ Sbjct: 2 ANYWLYKSEPFKWSWEXQKAKGETGEEWTGVRNYQARNNXRAXKIGDKGFFYHSNEGLDV 61 Query: 61 VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS 120 VGI EV ++PD TAE W+CVDI AVC P PVSL +KANP+L L+ S RLS Sbjct: 62 VGIVEVCALSHPDSTAEGDLKWDCVDIRAVCDXPQPVSLKDVKANPKLEKXSLVTSXRLS 121 Query: 121 VQPVTTDEYLEVCRMGKLSNPP 142 VQPVT +EYLEVCR G L+NPP Sbjct: 122 VQPVTEEEYLEVCRXGGLANPP 143 >2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG2947, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris CGA009} (A:) Length = 145 Score = 189 bits (482), Expect = 1e-49 Identities = 81/141 (57%), Positives = 99/141 (70%), Gaps = 1/141 (0%) Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60 +AYWLVKSEPS WSW Q KG GEAWTGVRN+ A+ +M MR GD+ F+YHSN+G+EI Sbjct: 1 VAYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNEGKEI 60 Query: 61 VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS 120 VGI E+I YPDPT S + CVDI A + PV+L A+KA PRL+ M L+ SRLS Sbjct: 61 VGIAEIIREAYPDPTDA-SGKFVCVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLS 119 Query: 121 VQPVTTDEYLEVCRMGKLSNP 141 VQPVT +E+ VC+MG L Sbjct: 120 VQPVTAEEWKLVCKMGGLLEH 140 >3eop_A Thymocyte nuclear protein 1; protein of unknown function, alternative splicing, nucleus, phosphoprotein; 2.30A {Homo sapiens} (A:) Length = 176 Score = 177 bits (449), Expect = 8e-46 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 31/171 (18%) Query: 1 MAYWLVKSEPS---------EWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFF 51 M++WL+KSEP ++S + + + + W GVRNYQARN +R M++G++ FF Sbjct: 1 MSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFF 60 Query: 52 YHSN-KGREIVGIFEVITCTYPDPTAEQSSC-------------WECVDICAVCSMPCPV 97 YHSN K I G+ +++ YPD T + + W VD+ V M + Sbjct: 61 YHSNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFI 120 Query: 98 SLMAIKANPR--------LSSMILIVSSRLSVQPVTTDEYLEVCRMGKLSN 140 L +K+ + L +M+L RLS+QP+T +E+ V + +L + Sbjct: 121 PLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEELEH 171 >2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.60A {Leishmania major} (A:) Length = 172 Score = 175 bits (444), Expect = 3e-45 Identities = 58/155 (37%), Positives = 76/155 (49%), Gaps = 16/155 (10%) Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSN-KGRE 59 + YWL+KSEP ++S + W GVRNY ARNNMR M VGDK FYHSN K Sbjct: 19 IHYWLLKSEPHKFSIDDLAKQKT--SPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPG 76 Query: 60 IVGIFEVITCTYPDPTAEQSSC-------------WECVDICAVCSMPCPVSLMAIKANP 106 + G+ EV+ Y D TA + W+ VD+ V ++L +K+ Sbjct: 77 VAGLAEVVRLAYDDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRR 136 Query: 107 RLSSMILIVSSRLSVQPVTTDEYLEVCRMGKLSNP 141 L M L RLSVQPV+ EY + RM + Sbjct: 137 ELQKMALFTQRRLSVQPVSASEYAYILRMNEEQQR 171 >2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein structure initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} (A:) Length = 157 Score = 165 bits (419), Expect = 2e-42 Identities = 55/155 (35%), Positives = 75/155 (48%), Gaps = 17/155 (10%) Query: 2 AYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSN-KGREI 60 AYWL KSEP E+S Q G+ W GVRNYQARN +R GD+ FFYHS+ I Sbjct: 2 AYWLXKSEPDEFSISDLQRLGK--ARWDGVRNYQARNFLRTXAEGDEFFFYHSSCPEPGI 59 Query: 61 VGIFEVITCTYPDPTAEQSSC-------------WECVDICAVCSMPCPVSLMAIKANPR 107 GI +++ YPDPTA W +DI V + L +K + Sbjct: 60 AGIGKIVKTAYPDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQ 119 Query: 108 LSSMILI-VSSRLSVQPVTTDEYLEVCRMGKLSNP 141 L + L+ SRLSV PVT +++ + + + Sbjct: 120 LEQLPLVQKGSRLSVXPVTAEQWAAILALRLEHHH 154 >2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii} (A:) Length = 147 Score = 108 bits (271), Expect = 3e-25 Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 33/154 (21%) Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSN----- 55 MAYWL + W ++K G +N + ++VGDK Y Sbjct: 4 MAYWLCITNEDNWKV--IKEKKIWG-VAERYKNTINK-----VKVGDKLIIYEIQRSGKD 55 Query: 56 -KGREIVGIFEVITCTYPDPTA--------EQSSCWECVDICAVCSMPCPVSLMAIKANP 106 K I G++EV++ Y D + V + + P++ + Sbjct: 56 YKPPYIRGVYEVVSEVYKDSSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKL 115 Query: 107 RLSSMILIVSSRLSVQ-------PVTTDEYLEVC 133 + + R S + ++Y + Sbjct: 116 KF----ITNKKRWSGHLMGKAMREIPEEDYKLIV 145 >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} (A:79-142,A:232-342) Length = 175 Score = 29.3 bits (66), Expect = 0.20 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 12/74 (16%) Query: 7 KSEPSEWS------WKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60 EP + W + + K + G V + + F YH N+G + Sbjct: 65 NCEPQTYGIGLKELWVIDEKKWKPGRVDHTVG-WPLDRHTYGG-----SFLYHLNEGEPL 118 Query: 61 VGIFEVITCTYPDP 74 + + V+ Y +P Sbjct: 119 LALGFVVGLDYQNP 132 >4ubp_C Protein (urease (chain C)); nickel, acetohydroxamic acid, metalloenzyme; HET: KCX; 1.55A {Bacillus pasteurii} (C:133-426,C:486-570) Length = 379 Score = 29.0 bits (65), Expect = 0.26 Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%) Query: 19 QDKGRVGEAWTGVRNYQARNNMRKMR 44 GR GE R +Q + M+K R Sbjct: 233 LAMGRAGEMVL--RTWQTADKMKKQR 256 >2hd9_A UPF0310 protein PH1033; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii OT3} (A:) Length = 145 Score = 27.9 bits (62), Expect = 0.61 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 16/74 (21%) Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFY-------- 52 M YW+ + + +W++ + G + +N + +++ GDK Y Sbjct: 1 MTYWICIT--NRENWEVIKRHNVWG------VPKKHKNTLSRVKPGDKLVIYVRQEKDKE 52 Query: 53 HSNKGREIVGIFEV 66 + +IVGI+EV Sbjct: 53 GNLLEPKIVGIYEV 66 >1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} (A:) Length = 104 Score = 27.6 bits (61), Expect = 0.66 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 4/58 (6%) Query: 12 EWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITC 69 W+ +M++ +V T ++N + G F + V I+ C Sbjct: 51 SWTVRMKKRGEKVF--LTVGWENFVKDN--NLEDGKYLQFIYDRDRTFYVIIYGHNMC 104 >1e9y_B Urease beta subunit; hydrolase, dodecamer, acetohydroxamic acid; HET: KCX; 3.0A {Helicobacter pylori} (B:132-425,B:485-569) Length = 379 Score = 27.1 bits (60), Expect = 1.1 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%) Query: 19 QDKGRVGEAWTGVRNYQARNNMRKMR 44 Q GRVGE T R +Q + +K Sbjct: 233 QAMGRVGEVIT--RTWQTADKNKKEF 256 >3fj0_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase; HET: BGC; 1.15A {Uncultured bacterium} PDB: 3cmj_A 3fiz_A* 3fiy_A* (A:) Length = 465 Score = 25.8 bits (55), Expect = 2.4 Identities = 9/74 (12%), Positives = 18/74 (24%) Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60 + W+ +EP W + +++ F + Sbjct: 178 IPLWVTHNEPMVTVWAGYHMGLFAPGLKDPTLGGRVAHHLLLSHGQALQAFRALSPAGSQ 237 Query: 61 VGIFEVITCTYPDP 74 +GI YP Sbjct: 238 MGITLNFNTIYPVS 251 >3kjr_A Dihydrofolate reductase/thymidylate synthase; microfluidics, slipchip,structural genomics, PSI-2, protein structure initiative; HET: NAP NHE; 1.95A {Babesia bovis T2BO} PDB: 3i3r_A* 3k2h_A* (A:228-471) Length = 244 Score = 25.0 bits (54), Expect = 4.4 Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 4/108 (3%) Query: 12 EWSWKMQQDKGRVGEAWTG--VRNYQARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITC 69 + DK + Y + D Y ++ I I Sbjct: 82 LNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHADYTGKGIDQLAEIINRIK- 140 Query: 70 TYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSS 117 T P+ W D+ + PC ++ +L S ++ S Sbjct: 141 TNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNKL-SCMMHQRS 187 >2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} (A:1-180,A:226-292) Length = 247 Score = 24.6 bits (53), Expect = 4.9 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Query: 97 VSLMAIKANPRLSSM--ILIVSSRLSVQPVTTDE 128 + + A+K NP ++ IL+ R+ + PVT DE Sbjct: 128 IEVRAVKRNPLQPALYRILVRYGRVDLXPVTVDE 161 >1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} (A:1-238) Length = 238 Score = 24.7 bits (53), Expect = 5.8 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 2/65 (3%) Query: 49 GFFYHSNKGREIVGIFEVITC--TYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANP 106 G S G ++ + ++ P + W ++ A+ PC + Sbjct: 112 GKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHG 171 Query: 107 RLSSM 111 +L Sbjct: 172 KLHLE 176 >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics, NPPSFA; HET: PLP; 2.40A {Archaeoglobus fulgidus} (A:1-18,A:270-371) Length = 120 Score = 24.4 bits (53), Expect = 6.0 Identities = 7/15 (46%), Positives = 8/15 (53%) Query: 50 FFYHSNKGREIVGIF 64 F Y K R+I GI Sbjct: 72 FLYRELKSRKIHGIK 86 >1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} (A:) Length = 286 Score = 24.6 bits (53), Expect = 6.1 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 2/87 (2%) Query: 27 AWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITC--TYPDPTAEQSSCWEC 84 W QA++ + + I EVI P+ + S W Sbjct: 86 VWDENYENQAKDLGYHSGELGPIYGKQWRDFGGVDQIIEVIDRIKKLPNDRRQIVSAWNP 145 Query: 85 VDICAVCSMPCPVSLMAIKANPRLSSM 111 ++ + PC + N L Sbjct: 146 AELKYMALPPCHMFYQFNVRNGYLDLQ 172 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.133 0.433 Gapped Lambda K H 0.267 0.0633 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,147,430 Number of extensions: 47652 Number of successful extensions: 182 Number of sequences better than 10.0: 1 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 22 Length of query: 143 Length of database: 4,956,049 Length adjustment: 80 Effective length of query: 63 Effective length of database: 2,251,649 Effective search space: 141853887 Effective search space used: 141853887 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.2 bits)