RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781040|ref|YP_003065453.1| hypothetical protein
CLIBASIA_04710 [Candidatus Liberibacter asiaticus str. psy62]
(143 letters)
>1zce_A Hypothetical protein ATU2648; alpha-beta protein.,
structural genomics, PSI, protein structure initiative;
1.30A {Agrobacterium tumefaciens str} (A:)
Length = 155
Score = 190 bits (484), Expect = 7e-50
Identities = 89/142 (62%), Positives = 105/142 (73%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
YWL KSEP +WSW+ Q+ KG GE WTGVRNYQARNN R ++GDKGFFYHSN+G ++
Sbjct: 2 ANYWLYKSEPFKWSWEXQKAKGETGEEWTGVRNYQARNNXRAXKIGDKGFFYHSNEGLDV 61
Query: 61 VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS 120
VGI EV ++PD TAE W+CVDI AVC P PVSL +KANP+L L+ S RLS
Sbjct: 62 VGIVEVCALSHPDSTAEGDLKWDCVDIRAVCDXPQPVSLKDVKANPKLEKXSLVTSXRLS 121
Query: 121 VQPVTTDEYLEVCRMGKLSNPP 142
VQPVT +EYLEVCR G L+NPP
Sbjct: 122 VQPVTEEEYLEVCRXGGLANPP 143
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG,
structural genomics, COG2947, PSI, protein structure
initiative; NMR {Rhodopseudomonas palustris CGA009} (A:)
Length = 145
Score = 189 bits (482), Expect = 1e-49
Identities = 81/141 (57%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
+AYWLVKSEPS WSW Q KG GEAWTGVRN+ A+ +M MR GD+ F+YHSN+G+EI
Sbjct: 1 VAYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNEGKEI 60
Query: 61 VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS 120
VGI E+I YPDPT S + CVDI A + PV+L A+KA PRL+ M L+ SRLS
Sbjct: 61 VGIAEIIREAYPDPTDA-SGKFVCVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLS 119
Query: 121 VQPVTTDEYLEVCRMGKLSNP 141
VQPVT +E+ VC+MG L
Sbjct: 120 VQPVTAEEWKLVCKMGGLLEH 140
>3eop_A Thymocyte nuclear protein 1; protein of unknown function,
alternative splicing, nucleus, phosphoprotein; 2.30A
{Homo sapiens} (A:)
Length = 176
Score = 177 bits (449), Expect = 8e-46
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 31/171 (18%)
Query: 1 MAYWLVKSEPS---------EWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFF 51
M++WL+KSEP ++S + + + + W GVRNYQARN +R M++G++ FF
Sbjct: 1 MSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFF 60
Query: 52 YHSN-KGREIVGIFEVITCTYPDPTAEQSSC-------------WECVDICAVCSMPCPV 97
YHSN K I G+ +++ YPD T + + W VD+ V M +
Sbjct: 61 YHSNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFI 120
Query: 98 SLMAIKANPR--------LSSMILIVSSRLSVQPVTTDEYLEVCRMGKLSN 140
L +K+ + L +M+L RLS+QP+T +E+ V + +L +
Sbjct: 121 PLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEELEH 171
>2ar1_A Hypothetical protein; structural genomics, PSI, protein
structure initiative, structural genomics of pathogenic
protozoa consortium; 1.60A {Leishmania major} (A:)
Length = 172
Score = 175 bits (444), Expect = 3e-45
Identities = 58/155 (37%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSN-KGRE 59
+ YWL+KSEP ++S + W GVRNY ARNNMR M VGDK FYHSN K
Sbjct: 19 IHYWLLKSEPHKFSIDDLAKQKT--SPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPG 76
Query: 60 IVGIFEVITCTYPDPTAEQSSC-------------WECVDICAVCSMPCPVSLMAIKANP 106
+ G+ EV+ Y D TA + W+ VD+ V ++L +K+
Sbjct: 77 VAGLAEVVRLAYDDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRR 136
Query: 107 RLSSMILIVSSRLSVQPVTTDEYLEVCRMGKLSNP 141
L M L RLSVQPV+ EY + RM +
Sbjct: 137 ELQKMALFTQRRLSVQPVSASEYAYILRMNEEQQR 171
>2eve_A Hypothetical protein pspto5229; alpha-beta protein,
structural genomics, PSI, protein structure initiative;
HET: MPO; 1.60A {Pseudomonas syringae PV} (A:)
Length = 157
Score = 165 bits (419), Expect = 2e-42
Identities = 55/155 (35%), Positives = 75/155 (48%), Gaps = 17/155 (10%)
Query: 2 AYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSN-KGREI 60
AYWL KSEP E+S Q G+ W GVRNYQARN +R GD+ FFYHS+ I
Sbjct: 2 AYWLXKSEPDEFSISDLQRLGK--ARWDGVRNYQARNFLRTXAEGDEFFFYHSSCPEPGI 59
Query: 61 VGIFEVITCTYPDPTAEQSSC-------------WECVDICAVCSMPCPVSLMAIKANPR 107
GI +++ YPDPTA W +DI V + L +K +
Sbjct: 60 AGIGKIVKTAYPDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQ 119
Query: 108 LSSMILI-VSSRLSVQPVTTDEYLEVCRMGKLSNP 141
L + L+ SRLSV PVT +++ + + +
Sbjct: 120 LEQLPLVQKGSRLSVXPVTAEQWAAILALRLEHHH 154
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein
structural and functional analyses; 1.70A
{Methanocaldococcus jannaschii} (A:)
Length = 147
Score = 108 bits (271), Expect = 3e-25
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 33/154 (21%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSN----- 55
MAYWL + W ++K G +N + ++VGDK Y
Sbjct: 4 MAYWLCITNEDNWKV--IKEKKIWG-VAERYKNTINK-----VKVGDKLIIYEIQRSGKD 55
Query: 56 -KGREIVGIFEVITCTYPDPTA--------EQSSCWECVDICAVCSMPCPVSLMAIKANP 106
K I G++EV++ Y D + V + + P++ +
Sbjct: 56 YKPPYIRGVYEVVSEVYKDSSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKL 115
Query: 107 RLSSMILIVSSRLSVQ-------PVTTDEYLEVC 133
+ + R S + ++Y +
Sbjct: 116 KF----ITNKKRWSGHLMGKAMREIPEEDYKLIV 145
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase;
HET: BHG FAD UQ5; 2.50A {Sus scrofa}
(A:79-142,A:232-342)
Length = 175
Score = 29.3 bits (66), Expect = 0.20
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 12/74 (16%)
Query: 7 KSEPSEWS------WKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
EP + W + + K + G V + + F YH N+G +
Sbjct: 65 NCEPQTYGIGLKELWVIDEKKWKPGRVDHTVG-WPLDRHTYGG-----SFLYHLNEGEPL 118
Query: 61 VGIFEVITCTYPDP 74
+ + V+ Y +P
Sbjct: 119 LALGFVVGLDYQNP 132
>4ubp_C Protein (urease (chain C)); nickel, acetohydroxamic acid,
metalloenzyme; HET: KCX; 1.55A {Bacillus pasteurii}
(C:133-426,C:486-570)
Length = 379
Score = 29.0 bits (65), Expect = 0.26
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 19 QDKGRVGEAWTGVRNYQARNNMRKMR 44
GR GE R +Q + M+K R
Sbjct: 233 LAMGRAGEMVL--RTWQTADKMKKQR 256
>2hd9_A UPF0310 protein PH1033; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: CIT; 1.35A {Pyrococcus horikoshii OT3}
(A:)
Length = 145
Score = 27.9 bits (62), Expect = 0.61
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFY-------- 52
M YW+ + + +W++ + G + +N + +++ GDK Y
Sbjct: 1 MTYWICIT--NRENWEVIKRHNVWG------VPKKHKNTLSRVKPGDKLVIYVRQEKDKE 52
Query: 53 HSNKGREIVGIFEV 66
+ +IVGI+EV
Sbjct: 53 GNLLEPKIVGIYEV 66
>1yel_A AT1G16640; CESG, protein structure initiative, structural
genomics, center for eukaryotic structural genomics,
unknown function; NMR {Arabidopsis thaliana} (A:)
Length = 104
Score = 27.6 bits (61), Expect = 0.66
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 12 EWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITC 69
W+ +M++ +V T ++N + G F + V I+ C
Sbjct: 51 SWTVRMKKRGEKVF--LTVGWENFVKDN--NLEDGKYLQFIYDRDRTFYVIIYGHNMC 104
>1e9y_B Urease beta subunit; hydrolase, dodecamer, acetohydroxamic
acid; HET: KCX; 3.0A {Helicobacter pylori}
(B:132-425,B:485-569)
Length = 379
Score = 27.1 bits (60), Expect = 1.1
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 19 QDKGRVGEAWTGVRNYQARNNMRKMR 44
Q GRVGE T R +Q + +K
Sbjct: 233 QAMGRVGEVIT--RTWQTADKNKKEF 256
>3fj0_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase; HET:
BGC; 1.15A {Uncultured bacterium} PDB: 3cmj_A 3fiz_A*
3fiy_A* (A:)
Length = 465
Score = 25.8 bits (55), Expect = 2.4
Identities = 9/74 (12%), Positives = 18/74 (24%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
+ W+ +EP W + +++ F +
Sbjct: 178 IPLWVTHNEPMVTVWAGYHMGLFAPGLKDPTLGGRVAHHLLLSHGQALQAFRALSPAGSQ 237
Query: 61 VGIFEVITCTYPDP 74
+GI YP
Sbjct: 238 MGITLNFNTIYPVS 251
>3kjr_A Dihydrofolate reductase/thymidylate synthase; microfluidics,
slipchip,structural genomics, PSI-2, protein structure
initiative; HET: NAP NHE; 1.95A {Babesia bovis T2BO}
PDB: 3i3r_A* 3k2h_A* (A:228-471)
Length = 244
Score = 25.0 bits (54), Expect = 4.4
Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 4/108 (3%)
Query: 12 EWSWKMQQDKGRVGEAWTG--VRNYQARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITC 69
+ DK + Y + D Y ++ I I
Sbjct: 82 LNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHADYTGKGIDQLAEIINRIK- 140
Query: 70 TYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSS 117
T P+ W D+ + PC ++ +L S ++ S
Sbjct: 141 TNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNKL-SCMMHQRS 187
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix,
helix- hairpin-helix, HHH motif, three helix bundle;
2.30A {Methanopyrus kandleri} (A:1-180,A:226-292)
Length = 247
Score = 24.6 bits (53), Expect = 4.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 97 VSLMAIKANPRLSSM--ILIVSSRLSVQPVTTDE 128
+ + A+K NP ++ IL+ R+ + PVT DE
Sbjct: 128 IEVRAVKRNPLQPALYRILVRYGRVDLXPVTVDE 161
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase;
1.70A {Bacillus subtilis} (A:1-238)
Length = 238
Score = 24.7 bits (53), Expect = 5.8
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 49 GFFYHSNKGREIVGIFEVITC--TYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANP 106
G S G ++ + ++ P + W ++ A+ PC +
Sbjct: 112 GKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHG 171
Query: 107 RLSSM 111
+L
Sbjct: 172 KLHLE 176
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand,
lyase, structural genomics, NPPSFA; HET: PLP; 2.40A
{Archaeoglobus fulgidus} (A:1-18,A:270-371)
Length = 120
Score = 24.4 bits (53), Expect = 6.0
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 50 FFYHSNKGREIVGIF 64
F Y K R+I GI
Sbjct: 72 FLYRELKSRKIHGIK 86
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A
{Enterobacteria phage T4} (A:)
Length = 286
Score = 24.6 bits (53), Expect = 6.1
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 2/87 (2%)
Query: 27 AWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITC--TYPDPTAEQSSCWEC 84
W QA++ + + I EVI P+ + S W
Sbjct: 86 VWDENYENQAKDLGYHSGELGPIYGKQWRDFGGVDQIIEVIDRIKKLPNDRRQIVSAWNP 145
Query: 85 VDICAVCSMPCPVSLMAIKANPRLSSM 111
++ + PC + N L
Sbjct: 146 AELKYMALPPCHMFYQFNVRNGYLDLQ 172
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.133 0.433
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,147,430
Number of extensions: 47652
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 22
Length of query: 143
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 63
Effective length of database: 2,251,649
Effective search space: 141853887
Effective search space used: 141853887
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)