RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781040|ref|YP_003065453.1| hypothetical protein CLIBASIA_04710 [Candidatus Liberibacter asiaticus str. psy62] (143 letters) >1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein structure initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8 Length = 155 Score = 187 bits (476), Expect = 8e-49 Identities = 95/142 (66%), Positives = 111/142 (78%) Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60 YWL KSEP +WSW+MQ+ KG GE WTGVRNYQARNNMR M++GDKGFFYHSN+G ++ Sbjct: 2 ANYWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQARNNMRAMKIGDKGFFYHSNEGLDV 61 Query: 61 VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS 120 VGI EV ++PD TAE W+CVDI AVC MP PVSL +KANP+L M L+ S RLS Sbjct: 62 VGIVEVCALSHPDSTAEGDLKWDCVDIRAVCDMPQPVSLKDVKANPKLEKMSLVTSMRLS 121 Query: 121 VQPVTTDEYLEVCRMGKLSNPP 142 VQPVT +EYLEVCRMG L+NPP Sbjct: 122 VQPVTEEEYLEVCRMGGLANPP 143 >2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG2947, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris CGA009} SCOP: b.122.1.8 Length = 145 Score = 175 bits (446), Expect = 3e-45 Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 1/139 (0%) Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60 +AYWLVKSEPS WSW Q KG GEAWTGVRN+ A+ +M MR GD+ F+YHSN+G+EI Sbjct: 1 VAYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNEGKEI 60 Query: 61 VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS 120 VGI E+I YPDPT CVDI A + PV+L A+KA PRL+ M L+ SRLS Sbjct: 61 VGIAEIIREAYPDPTDASGKFV-CVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLS 119 Query: 121 VQPVTTDEYLEVCRMGKLS 139 VQPVT +E+ VC+MG L Sbjct: 120 VQPVTAEEWKLVCKMGGLL 138 >2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.60A {Leishmania major} SCOP: b.122.1.8 Length = 172 Score = 166 bits (421), Expect = 2e-42 Identities = 55/151 (36%), Positives = 72/151 (47%), Gaps = 16/151 (10%) Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60 + YWL+KSEP ++S + W GVRNY ARNNMR M VGDK FYHSN Sbjct: 19 IHYWLLKSEPHKFSIDDLAKQK--TSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPG 76 Query: 61 VGIFEVITCT-YPDPTAE-------------QSSCWECVDICAVCSMPCPVSLMAIKANP 106 V + Y D TA + + W+ VD+ V ++L +K+ Sbjct: 77 VAGLAEVVRLAYDDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRR 136 Query: 107 RLSSMILIVSSRLSVQPVTTDEYLEVCRMGK 137 L M L RLSVQPV+ EY + RM + Sbjct: 137 ELQKMALFTQRRLSVQPVSASEYAYILRMNE 167 >3eop_A Thymocyte nuclear protein 1; protein of unknown function, alternative splicing, nucleus, phosphoprotein; 2.30A {Homo sapiens} Length = 176 Score = 160 bits (407), Expect = 7e-41 Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 31/169 (18%) Query: 1 MAYWLVKSEPS---------EWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFF 51 M++WL+KSEP ++S + + + + W GVRNYQARN +R M++G++ FF Sbjct: 1 MSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFF 60 Query: 52 YHSN-KGREIVGIFEVITCTYPDPTAEQSSC-------------WECVDICAVCSMPCPV 97 YHSN K I G+ +++ YPD T + + W VD+ V M + Sbjct: 61 YHSNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFI 120 Query: 98 SLMAIKANPR--------LSSMILIVSSRLSVQPVTTDEYLEVCRMGKL 138 L +K+ + L +M+L RLS+QP+T +E+ V + +L Sbjct: 121 PLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEEL 169 >2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein structure initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A Length = 157 Score = 155 bits (393), Expect = 4e-39 Identities = 56/152 (36%), Positives = 76/152 (50%), Gaps = 17/152 (11%) Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGRE- 59 MAYWL+KSEP E+S Q G+ W GVRNYQARN +R M GD+ FFYHS+ Sbjct: 1 MAYWLMKSEPDEFSISDLQRLGK--ARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPG 58 Query: 60 IVGIFEVITCTYPDPTAEQSSCWE-------------CVDICAVCSMPCPVSLMAIKANP 106 I GI +++ YPDPTA +DI V + L +K Sbjct: 59 IAGIGKIVKTAYPDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQS 118 Query: 107 RLSSMILIV-SSRLSVQPVTTDEYLEVCRMGK 137 +L + L+ SRLSV PVT +++ + + Sbjct: 119 QLEQLPLVQKGSRLSVMPVTAEQWAAILALRL 150 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 35.3 bits (80), Expect = 0.006 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%) Query: 12 EWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFF 51 EW K ++D E W ++ Q N R+ DK F+ Sbjct: 111 EWREKAKKDL----EEWNQRQSEQVEKNKINNRIADKAFY 146 >2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii} Length = 147 Score = 32.6 bits (74), Expect = 0.031 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 14/81 (17%) Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGRE- 59 MAYWL + +E +WK+ ++K G +N + K++VGDK Y + + Sbjct: 4 MAYWLCIT--NEDNWKVIKEKKIWG-VAER-----YKNTINKVKVGDKLIIYEIQRSGKD 55 Query: 60 -----IVGIFEVITCTYPDPT 75 I G++EV++ Y D + Sbjct: 56 YKPPYIRGVYEVVSEVYKDSS 76 >2hd9_A UPF0310 protein PH1033; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii OT3} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A Length = 145 Score = 30.7 bits (69), Expect = 0.13 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 16/83 (19%) Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFY-------- 52 M YW+ + + +W++ + G +N + +++ GDK Y Sbjct: 1 MTYWICIT--NRENWEVIKRHNVWG-VPKK-----HKNTLSRVKPGDKLVIYVRQEKDKE 52 Query: 53 HSNKGREIVGIFEVITCTYPDPT 75 + +IVGI+EV + Y D + Sbjct: 53 GNLLEPKIVGIYEVTSEPYVDFS 75 >3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B Length = 373 Score = 27.9 bits (61), Expect = 0.88 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 8/79 (10%) Query: 30 GVRNYQARNNMRKMRVGDKGFF--------YHSNKGREIVGIFEVITCTYPDPTAEQSSC 81 + + + K D F ++ N+ + YP +Q Sbjct: 56 NNKLIKIFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQV 115 Query: 82 WECVDICAVCSMPCPVSLM 100 + +I AV + Sbjct: 116 VKEDNIEAVGKKLHEYNTQ 134 >3e8o_A Uncharacterized protein with erredoxin-like fold; NP_295823.1, protein of unknown function with ferredoxin- like fold; HET: MSE; 1.40A {Deinococcus radiodurans} Length = 119 Score = 27.3 bits (60), Expect = 1.4 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 96 PVSLMAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVCR 134 P S++ +PR ++M+ I LS ++ Sbjct: 4 PQSMLTSPQHPRRTTMV-ISHGTLSASAEHAAHLRQLLV 41 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.1 bits (56), Expect = 2.7 Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 50/77 (64%) Query: 35 QARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITCTYPDPTAEQSSCWECVDICAVCSMP 94 QA ++K++ K Y D D S P Sbjct: 20 QA---LKKLQASLK---------------------LYAD------------D-----SAP 38 Query: 95 CPVSLMAIKANPRLSSM 111 +AIKA +M Sbjct: 39 A----LAIKA-----TM 46 >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 Length = 225 Score = 25.6 bits (56), Expect = 4.5 Identities = 9/35 (25%), Positives = 15/35 (42%) Query: 69 CTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIK 103 C P SS + V +C V P ++ ++K Sbjct: 38 CVNPYHVKLASSIAKKVKVCCVIGFPLGLNKTSVK 72 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 25.7 bits (56), Expect = 4.7 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 28 WTGVRNYQA 36 + GVR Y+A Sbjct: 305 FIGVRCYEA 313 >2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A Length = 519 Score = 25.0 bits (54), Expect = 7.1 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Query: 97 VSLMAIKANPRLSSM--ILIVSSRLSVQPVTTDE 128 + + A+K NP ++ IL+ R+ + PVT DE Sbjct: 128 IEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDE 161 >1zei_A Insulin, B28Asp-X-MCR; hormone, metabolic role, chemical activity, insulin mutant, cross-LINK, glucose metabolism, diabetes; 1.90A {Sus scrofa} SCOP: g.1.1.1 PDB: 6ins_E 1sju_A 2jzq_A Length = 53 Score = 24.6 bits (54), Expect = 7.4 Identities = 7/16 (43%), Positives = 10/16 (62%) Query: 46 GDKGFFYHSNKGREIV 61 G++GFFY + IV Sbjct: 20 GERGFFYTDKAAKGIV 35 >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 Length = 226 Score = 24.6 bits (53), Expect = 8.0 Identities = 7/35 (20%), Positives = 9/35 (25%) Query: 69 CTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIK 103 C P V +C V P A + Sbjct: 35 CVNPIYAPVVRPLLRKVKLCVVADFPFGALPTASR 69 >3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A Length = 380 Score = 24.7 bits (53), Expect = 8.4 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Query: 97 VSLMAIKANPRLSSM--ILIVSSRLSVQPVTTDE 128 + + A+K NP ++ IL+ R+ + PVT DE Sbjct: 128 IEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDE 161 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.133 0.433 Gapped Lambda K H 0.267 0.0529 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,270,211 Number of extensions: 52846 Number of successful extensions: 175 Number of sequences better than 10.0: 1 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 21 Length of query: 143 Length of database: 5,693,230 Length adjustment: 83 Effective length of query: 60 Effective length of database: 3,680,978 Effective search space: 220858680 Effective search space used: 220858680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.3 bits)