RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781040|ref|YP_003065453.1| hypothetical protein
CLIBASIA_04710 [Candidatus Liberibacter asiaticus str. psy62]
         (143 letters)



>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural
           genomics, PSI, protein structure initiative; 1.30A
           {Agrobacterium tumefaciens str} SCOP: b.122.1.8
          Length = 155

 Score =  187 bits (476), Expect = 8e-49
 Identities = 95/142 (66%), Positives = 111/142 (78%)

Query: 1   MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
             YWL KSEP +WSW+MQ+ KG  GE WTGVRNYQARNNMR M++GDKGFFYHSN+G ++
Sbjct: 2   ANYWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQARNNMRAMKIGDKGFFYHSNEGLDV 61

Query: 61  VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS 120
           VGI EV   ++PD TAE    W+CVDI AVC MP PVSL  +KANP+L  M L+ S RLS
Sbjct: 62  VGIVEVCALSHPDSTAEGDLKWDCVDIRAVCDMPQPVSLKDVKANPKLEKMSLVTSMRLS 121

Query: 121 VQPVTTDEYLEVCRMGKLSNPP 142
           VQPVT +EYLEVCRMG L+NPP
Sbjct: 122 VQPVTEEEYLEVCRMGGLANPP 143


>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural
           genomics, COG2947, PSI, protein structure initiative;
           NMR {Rhodopseudomonas palustris CGA009} SCOP: b.122.1.8
          Length = 145

 Score =  175 bits (446), Expect = 3e-45
 Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 1/139 (0%)

Query: 1   MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
           +AYWLVKSEPS WSW  Q  KG  GEAWTGVRN+ A+ +M  MR GD+ F+YHSN+G+EI
Sbjct: 1   VAYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNEGKEI 60

Query: 61  VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS 120
           VGI E+I   YPDPT        CVDI A   +  PV+L A+KA PRL+ M L+  SRLS
Sbjct: 61  VGIAEIIREAYPDPTDASGKFV-CVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLS 119

Query: 121 VQPVTTDEYLEVCRMGKLS 139
           VQPVT +E+  VC+MG L 
Sbjct: 120 VQPVTAEEWKLVCKMGGLL 138


>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure
           initiative, structural genomics of pathogenic protozoa
           consortium; 1.60A {Leishmania major} SCOP: b.122.1.8
          Length = 172

 Score =  166 bits (421), Expect = 2e-42
 Identities = 55/151 (36%), Positives = 72/151 (47%), Gaps = 16/151 (10%)

Query: 1   MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
           + YWL+KSEP ++S      +      W GVRNY ARNNMR M VGDK  FYHSN     
Sbjct: 19  IHYWLLKSEPHKFSIDDLAKQK--TSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPG 76

Query: 61  VGIFEVITCT-YPDPTAE-------------QSSCWECVDICAVCSMPCPVSLMAIKANP 106
           V     +    Y D TA              + + W+ VD+  V      ++L  +K+  
Sbjct: 77  VAGLAEVVRLAYDDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRR 136

Query: 107 RLSSMILIVSSRLSVQPVTTDEYLEVCRMGK 137
            L  M L    RLSVQPV+  EY  + RM +
Sbjct: 137 ELQKMALFTQRRLSVQPVSASEYAYILRMNE 167


>3eop_A Thymocyte nuclear protein 1; protein of unknown function,
           alternative splicing, nucleus, phosphoprotein; 2.30A
           {Homo sapiens}
          Length = 176

 Score =  160 bits (407), Expect = 7e-41
 Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 31/169 (18%)

Query: 1   MAYWLVKSEPS---------EWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFF 51
           M++WL+KSEP          ++S +  + + +    W GVRNYQARN +R M++G++ FF
Sbjct: 1   MSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFF 60

Query: 52  YHSN-KGREIVGIFEVITCTYPDPTAEQSSC-------------WECVDICAVCSMPCPV 97
           YHSN K   I G+ +++   YPD T  + +              W  VD+  V  M   +
Sbjct: 61  YHSNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFI 120

Query: 98  SLMAIKANPR--------LSSMILIVSSRLSVQPVTTDEYLEVCRMGKL 138
            L  +K+  +        L +M+L    RLS+QP+T +E+  V  + +L
Sbjct: 121 PLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEEL 169


>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural
           genomics, PSI, protein structure initiative; HET: MPO;
           1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB:
           2g2x_A
          Length = 157

 Score =  155 bits (393), Expect = 4e-39
 Identities = 56/152 (36%), Positives = 76/152 (50%), Gaps = 17/152 (11%)

Query: 1   MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGRE- 59
           MAYWL+KSEP E+S    Q  G+    W GVRNYQARN +R M  GD+ FFYHS+     
Sbjct: 1   MAYWLMKSEPDEFSISDLQRLGK--ARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPG 58

Query: 60  IVGIFEVITCTYPDPTAEQSSCWE-------------CVDICAVCSMPCPVSLMAIKANP 106
           I GI +++   YPDPTA                     +DI  V      + L  +K   
Sbjct: 59  IAGIGKIVKTAYPDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQS 118

Query: 107 RLSSMILIV-SSRLSVQPVTTDEYLEVCRMGK 137
           +L  + L+   SRLSV PVT +++  +  +  
Sbjct: 119 QLEQLPLVQKGSRLSVMPVTAEQWAAILALRL 150


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 35.3 bits (80), Expect = 0.006
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 12  EWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFF 51
           EW  K ++D     E W   ++ Q   N    R+ DK F+
Sbjct: 111 EWREKAKKDL----EEWNQRQSEQVEKNKINNRIADKAFY 146


>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein
          structural and functional analyses; 1.70A
          {Methanocaldococcus jannaschii}
          Length = 147

 Score = 32.6 bits (74), Expect = 0.031
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 14/81 (17%)

Query: 1  MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGRE- 59
          MAYWL  +  +E +WK+ ++K   G           +N + K++VGDK   Y   +  + 
Sbjct: 4  MAYWLCIT--NEDNWKVIKEKKIWG-VAER-----YKNTINKVKVGDKLIIYEIQRSGKD 55

Query: 60 -----IVGIFEVITCTYPDPT 75
               I G++EV++  Y D +
Sbjct: 56 YKPPYIRGVYEVVSEVYKDSS 76


>2hd9_A UPF0310 protein PH1033; structural genomics, NPPSFA, national
          project on protein structural and functional analyses;
          HET: CIT; 1.35A {Pyrococcus horikoshii OT3} SCOP:
          b.122.1.8 PDB: 1wmm_A* 2zbn_A
          Length = 145

 Score = 30.7 bits (69), Expect = 0.13
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 16/83 (19%)

Query: 1  MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFY-------- 52
          M YW+  +  +  +W++ +     G           +N + +++ GDK   Y        
Sbjct: 1  MTYWICIT--NRENWEVIKRHNVWG-VPKK-----HKNTLSRVKPGDKLVIYVRQEKDKE 52

Query: 53 HSNKGREIVGIFEVITCTYPDPT 75
           +    +IVGI+EV +  Y D +
Sbjct: 53 GNLLEPKIVGIYEVTSEPYVDFS 75


>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
           triphosphate, wortmannin, H1047R, ATP-binding, disease
           mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
           3hiz_B 2rd0_B
          Length = 373

 Score = 27.9 bits (61), Expect = 0.88
 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 8/79 (10%)

Query: 30  GVRNYQARNNMRKMRVGDKGFF--------YHSNKGREIVGIFEVITCTYPDPTAEQSSC 81
             +  +  +   K    D   F        ++ N+          +   YP    +Q   
Sbjct: 56  NNKLIKIFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQV 115

Query: 82  WECVDICAVCSMPCPVSLM 100
            +  +I AV       +  
Sbjct: 116 VKEDNIEAVGKKLHEYNTQ 134


>3e8o_A Uncharacterized protein with erredoxin-like fold; NP_295823.1,
           protein of unknown function with ferredoxin- like fold;
           HET: MSE; 1.40A {Deinococcus radiodurans}
          Length = 119

 Score = 27.3 bits (60), Expect = 1.4
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 96  PVSLMAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVCR 134
           P S++    +PR ++M+ I    LS          ++  
Sbjct: 4   PQSMLTSPQHPRRTTMV-ISHGTLSASAEHAAHLRQLLV 41


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.1 bits (56), Expect = 2.7
 Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 50/77 (64%)

Query: 35  QARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITCTYPDPTAEQSSCWECVDICAVCSMP 94
           QA   ++K++   K                      Y D            D     S P
Sbjct: 20  QA---LKKLQASLK---------------------LYAD------------D-----SAP 38

Query: 95  CPVSLMAIKANPRLSSM 111
                +AIKA     +M
Sbjct: 39  A----LAIKA-----TM 46


>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural
           genomics, PSI, protein structure initiative; 2.00A
           {Aquifex aeolicus} SCOP: c.1.10.1
          Length = 225

 Score = 25.6 bits (56), Expect = 4.5
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 69  CTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIK 103
           C  P      SS  + V +C V   P  ++  ++K
Sbjct: 38  CVNPYHVKLASSIAKKVKVCCVIGFPLGLNKTSVK 72


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.7 bits (56), Expect = 4.7
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 28  WTGVRNYQA 36
           + GVR Y+A
Sbjct: 305 FIGVRCYEA 313


>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-
           hairpin-helix, HHH motif, three helix bundle; 2.30A
           {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4
           a.60.2.4 a.267.1.1 PDB: 2csd_A
          Length = 519

 Score = 25.0 bits (54), Expect = 7.1
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 97  VSLMAIKANPRLSSM--ILIVSSRLSVQPVTTDE 128
           + + A+K NP   ++  IL+   R+ + PVT DE
Sbjct: 128 IEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDE 161


>1zei_A Insulin, B28Asp-X-MCR; hormone, metabolic role, chemical
          activity, insulin mutant, cross-LINK, glucose
          metabolism, diabetes; 1.90A {Sus scrofa} SCOP: g.1.1.1
          PDB: 6ins_E 1sju_A 2jzq_A
          Length = 53

 Score = 24.6 bits (54), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 46 GDKGFFYHSNKGREIV 61
          G++GFFY     + IV
Sbjct: 20 GERGFFYTDKAAKGIV 35


>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle,
           archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP:
           c.1.10.1
          Length = 226

 Score = 24.6 bits (53), Expect = 8.0
 Identities = 7/35 (20%), Positives = 9/35 (25%)

Query: 69  CTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIK 103
           C  P            V +C V   P      A +
Sbjct: 35  CVNPIYAPVVRPLLRKVKLCVVADFPFGALPTASR 69


>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I
           protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB:
           3m6k_A* 3m7d_A 3m7g_A
          Length = 380

 Score = 24.7 bits (53), Expect = 8.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 97  VSLMAIKANPRLSSM--ILIVSSRLSVQPVTTDE 128
           + + A+K NP   ++  IL+   R+ + PVT DE
Sbjct: 128 IEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDE 161


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.133    0.433 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,270,211
Number of extensions: 52846
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 21
Length of query: 143
Length of database: 5,693,230
Length adjustment: 83
Effective length of query: 60
Effective length of database: 3,680,978
Effective search space: 220858680
Effective search space used: 220858680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)