HHsearch alignment for GI: 254781041 and conserved domain: TIGR02970
>TIGR02970 succ_dehyd_cytB succinate dehydrogenase, cytochrome b556 subunit; InterPro: IPR014314 In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase (a TCA cycle enzyme) are SdhC and SdhD. This entry is the SdhC, the cytochrome b subunit, called b556 in bacteria and b560 in mitochondria. SdhD (see IPR014312 from INTERPRO) is called the hydrophobic membrane anchor subunit, although both SdhC and SdhD participate in anchoring the complex. In some bacteria, this cytochrome b subunit is replaced my a member of the cytochrome b558 family (see IPR011138 from INTERPRO)..
Probab=100.00 E-value=0 Score=273.57 Aligned_cols=119 Identities=33% Similarity=0.627 Sum_probs=117.2
Q ss_pred CCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHH-HCCCHHHHHHHHHHHHHHH
Q ss_conf 4989997735102666599999999999999999999999999985163035--546753-0683169999999999999
Q gi|254781041|r 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL--SSLRCY-MDGSVFEVCLFLYTWAVIH 82 (129)
Q Consensus 6 ~~RPlsphL~iyk~~~t~~~SI~HRitGi~l~~~~~~~~~~l~~~~~~~~~~--~~~~~~-~~~~~~k~~~~~~~~~~~y 82 (129)
T Consensus 1 ~~RP~sphL~~yr~p~~a~~SIlHRitG~~Lf~~l~~~~w~L~~~l~s~~~f~~~~~~~~l~~~~~~kl~l~~~~~a~~y 80 (123)
T TIGR02970 1 KQRPLSPHLQIYRFPITAILSILHRITGVLLFFGLPFLLWLLSLSLSSPESFLNATVQALLLSSPLGKLILFGLLWALLY 80 (123)
T ss_pred CCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998998642201523677779999999999999999999999850788999999999897317999999999999999
Q ss_pred HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999989999985212335899999999999999999999999
Q gi|254781041|r 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124 (129)
Q Consensus 83 H~~nGiRHL~wD~g~g~~~~~~~~s~~~vl~~sil~~~~~~~ 124 (129)
T Consensus 81 H~~~GIRHL~~D~G~G~~~~~~~~~a~~v~~~~~vl~~~~~~ 122 (123)
T TIGR02970 81 HLLAGIRHLLWDLGYGLELKSARISAWVVLVLSLVLTVLAGI 122 (123)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999889999987288865567888999999999999999984