Query gi|254781041|ref|YP_003065454.1| succinate dehydrogenase protein, cytochrome b subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs 106 out of 995
Neff 6.8
Searched_HMMs 33803
Date Wed Jun 1 22:01:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781041.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2wdq_C Succinate dehydrogenas 100.0 2.2E-43 0 255.9 14.8 125 1-125 2-127 (129)
2 >1zoy_C Large cytochrome bindi 100.0 3.2E-36 9.4E-41 216.8 11.7 112 14-125 1-114 (114)
3 >2h88_C Succinate dehydrogenas 100.0 1.9E-35 5.7E-40 212.5 13.0 111 14-124 1-113 (114)
4 >2wdq_D Succinate dehydrogenas 99.0 1.5E-08 4.4E-13 65.7 12.0 84 18-103 8-91 (115)
5 >2bs2_C Quinol-fumarate reduct 98.4 1.1E-05 3.1E-10 50.1 12.5 83 18-101 102-184 (240)
6 >2bs2_C Quinol-fumarate reduct 97.1 0.0098 2.9E-07 33.9 10.4 78 18-95 3-89 (240)
7 >1kf6_C Fumarate reductase 15 93.6 0.34 1E-05 25.6 6.9 76 8-85 9-84 (91)
8 >1kf6_D Fumarate reductase 13 93.5 0.45 1.3E-05 24.9 11.3 89 1-100 1-95 (119)
9 >2zjs_E Preprotein translocase 30.3 35 0.001 14.6 2.9 29 100-128 23-51 (60)
10 >1dj7_B Ferredoxin thioredoxin 28.6 17 0.0005 16.3 0.4 11 6-16 43-53 (75)
11 >3dl8_C SECE; RECA-type ATPase 25.3 43 0.0013 14.1 3.0 38 85-127 12-49 (65)
12 >3c19_A Uncharacterized protei 24.7 15 0.00045 16.5 -0.4 31 3-33 39-75 (85)
13 >1kqf_C FDH-N, formate dehydro 23.8 46 0.0014 13.9 4.1 19 23-41 41-59 (72)
14 >2hde_A Histone deacetylase co 20.8 37 0.0011 14.4 1.0 20 6-25 47-66 (148)
No 1
>>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* (C:)
Probab=100.00 E-value=2.2e-43 Score=255.92 Aligned_cols=125 Identities=18% Similarity=0.341 Sum_probs=120.1
Q ss_pred CCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 96200498999773510266659999999999999999999999999998516303554675306831699999999999
Q gi|254781041|r 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAV 80 (129)
Q Consensus 1 m~~m~~~RPlsphL~iyk~~~t~~~SI~HRitGi~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 80 (129)
+.|||+|||+||||||||+|++|++||+||+||++++++++++.+++.....+||+|+.+...++++++|++++++.+++
T Consensus 2 a~~~~~~RP~sPhL~iYr~~~~~~~SIlHRiTG~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (129)
T 2wdq_C 2 IRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTAL 81 (129)
T ss_dssp ------CCCBCCCGGGSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10014699999985624632999999999999999999999999999997223027999999997799999999999999
Q ss_pred HHHHHHHHHHHHHHCCHHCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999989999985212335-8999999999999999999999999
Q gi|254781041|r 81 IHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVLIVWII 125 (129)
Q Consensus 81 ~yH~~nGiRHL~wD~g~g~~-~~~~~~s~~~vl~~sil~~~~~~~i 125 (129)
.||++||+||++||+|+|++ +++++++++++++++++.++..|+.
T Consensus 82 ~yH~~nGiRHL~~D~g~g~~~~~~~~~s~~~v~~~s~~~t~~~~~~ 127 (129)
T 2wdq_C 82 AYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVL 127 (129)
T ss_dssp HHHHHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999983999999823003468999999999999999999999999
No 2
>>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* (C:27-140)
Probab=100.00 E-value=3.2e-36 Score=216.81 Aligned_cols=112 Identities=23% Similarity=0.305 Sum_probs=107.3
Q ss_pred CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3510266659999999999999999999999999998516303554675--30683169999999999999999989999
Q gi|254781041|r 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC--YMDGSVFEVCLFLYTWAVIHHMLGGIRYL 91 (129)
Q Consensus 14 L~iyk~~~t~~~SI~HRitGi~l~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~k~~~~~~~~~~~yH~~nGiRHL 91 (129)
|||||||+||++||+||+||++++++++++.+++.....+||+|+.+.+ .+++++++++++++++|+.||++||+||+
T Consensus 1 LtiYr~~lt~~~SIlHRiTG~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yH~~nGiRHL 80 (114)
T 1zoy_C 1 ITIYRWSLPMAMSICHRGTGIALSAGVSLFGLSALLLPGNFESHLELVKSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHL 80 (114)
T ss_dssp TTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36056329999999999999999988999999999960450688999999851618999999999999999999849999
Q ss_pred HHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9852123358999999999999999999999999
Q gi|254781041|r 92 IWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125 (129)
Q Consensus 92 ~wD~g~g~~~~~~~~s~~~vl~~sil~~~~~~~i 125 (129)
+||+|+|+|+|+++++|++++++|++.++.+|++
T Consensus 81 ~wD~g~g~~~~~~~~sg~~~~~~s~v~t~~~~~i 114 (114)
T 1zoy_C 81 IWDLGKGLTIPQLTQSGVVVLILTVLSSVGLAAM 114 (114)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9980146749999999999999999999999979
No 3
>>2h88_C Succinate dehydrogenase cytochrome B, large subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* (C:27-140)
Probab=100.00 E-value=1.9e-35 Score=212.53 Aligned_cols=111 Identities=20% Similarity=0.295 Sum_probs=106.3
Q ss_pred CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35102666599999999999999999999999999985163035546753--0683169999999999999999989999
Q gi|254781041|r 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY--MDGSVFEVCLFLYTWAVIHHMLGGIRYL 91 (129)
Q Consensus 14 L~iyk~~~t~~~SI~HRitGi~l~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~k~~~~~~~~~~~yH~~nGiRHL 91 (129)
|||||||+||++||+||+||++++++++++.+++.....+||+|+.+... .++++++++++++++|+.||++||+||+
T Consensus 1 L~iYk~~lt~~~SI~HRiTG~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yH~~nGiRHL 80 (114)
T 2h88_C 1 ISIYKWSLPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSLSLSPALIYSAKFALVFPLSYHTWNGIRHL 80 (114)
T ss_dssp TTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46134238899999999999999999999999999852566889988863002319999999999999999999879999
Q ss_pred HHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 985212335899999999999999999999999
Q gi|254781041|r 92 IWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124 (129)
Q Consensus 92 ~wD~g~g~~~~~~~~s~~~vl~~sil~~~~~~~ 124 (129)
+||+|+|+|++++++++++++++|++.++.+|.
T Consensus 81 ~wD~g~g~~~~~~~~tg~~v~~~s~~~t~~~~~ 113 (114)
T 2h88_C 81 VWDMGKGFKLSQVEQSGVVVLILTLLSSAAIAS 113 (114)
T ss_dssp HHHTTCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 996104776999999999999999999999980
No 4
>>2wdq_D Succinate dehydrogenase hydrophobic membrane anchor subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* (D:)
Probab=98.97 E-value=1.5e-08 Score=65.72 Aligned_cols=84 Identities=19% Similarity=0.141 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 26665999999999999999999999999999851630355467530683169999999999999999989999985212
Q gi|254781041|r 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97 (129)
Q Consensus 18 k~~~t~~~SI~HRitGi~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~yH~~nGiRHL~wD~g~ 97 (129)
+..-.+.-...||+||+++....+.+.+ .....++.+|+.+.+.+++++.+........+..||..||+|+.+-|+-.
T Consensus 8 ~~~~G~~~W~~qRiTav~L~~l~~~~i~--~~~~~~~~~y~~~~~~~~~p~~~i~~~l~l~~~~~Ha~~G~~~iieDYv~ 85 (115)
T 2wdq_D 8 LGRNGVHDFILVRATAIVLTLYIIYMVG--FFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVK 85 (115)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHH--HHTTCSSCCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5567899999999999999999999999--99982999999999999494999999999999999999989999999837
Q ss_pred HCCHHH
Q ss_conf 335899
Q gi|254781041|r 98 CLDKKI 103 (129)
Q Consensus 98 g~~~~~ 103 (129)
+...+.
T Consensus 86 ~~~~r~ 91 (115)
T 2wdq_D 86 PLALRL 91 (115)
T ss_dssp SHHHHH
T ss_pred CHHHHH
T ss_conf 466999
No 5
>>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} (C:17-256)
Probab=98.40 E-value=1.1e-05 Score=50.14 Aligned_cols=83 Identities=12% Similarity=-0.004 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 26665999999999999999999999999999851630355467530683169999999999999999989999985212
Q gi|254781041|r 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97 (129)
Q Consensus 18 k~~~t~~~SI~HRitGi~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~yH~~nGiRHL~wD~g~ 97 (129)
+.......+.++|+||.++.+.+....+-+- ....++.|+.....+.++...+.-.....+..+|..||++..++|.|.
T Consensus 102 ~~~~~~~~~~~q~itG~iLl~fli~Hl~~~~-~~~~~~~~~~~~~~~~~p~~~~~Y~~~l~~l~~H~~~Gl~~~~~~~G~ 180 (240)
T 2bs2_C 102 MRHGDTTLWWIQAMTGFAMFFLGSVHLYIMM-TQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKWGW 180 (240)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCGGGCSTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4422109999999999999999999999862-266778789999999581199999999999999986409999988524
Q ss_pred HCCH
Q ss_conf 3358
Q gi|254781041|r 98 CLDK 101 (129)
Q Consensus 98 g~~~ 101 (129)
..+.
T Consensus 181 ~~~~ 184 (240)
T 2bs2_C 181 FDGE 184 (240)
T ss_dssp TCTT
T ss_pred CCCC
T ss_conf 3465
No 6
>>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} (C:17-256)
Probab=97.08 E-value=0.0098 Score=33.95 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2666599999999999999999999999999985163035546753068---------3169999999999999999989
Q gi|254781041|r 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG---------SVFEVCLFLYTWAVIHHMLGGI 88 (129)
Q Consensus 18 k~~~t~~~SI~HRitGi~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~k~~~~~~~~~~~yH~~nGi 88 (129)
+++-+.....+|++||..+..++......-.....++|.|+.....+++ +........+..++..|...|+
T Consensus 3 ~~~~~~~lk~l~~~sGl~l~~Fl~~Hl~~n~~~~~g~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~H~~~a~ 82 (240)
T 2bs2_C 3 KSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAM 82 (240)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHTTCTTTSSSCCTHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77873899999999999999999999999899970999999999999862023578508999999999999999999999
Q ss_pred HHHHHHC
Q ss_conf 9999852
Q gi|254781041|r 89 RYLIWDV 95 (129)
Q Consensus 89 RHL~wD~ 95 (129)
|-.....
T Consensus 83 ~~~~~~~ 89 (240)
T 2bs2_C 83 RKFPINY 89 (240)
T ss_dssp GGSCCSH
T ss_pred HHHHHHH
T ss_conf 9998646
No 7
>>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} (C:1-91)
Probab=93.56 E-value=0.34 Score=25.55 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=58.6
Q ss_pred CCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 899977351026665999999999999999999999999999851630355467530683169999999999999999
Q gi|254781041|r 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHML 85 (129)
Q Consensus 8 RPlsphL~iyk~~~t~~~SI~HRitGi~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~yH~~ 85 (129)
||+.++= +|-..-=..-.++-.|++....+..++.+++.++..+||+++.+..+..+++.-++-.....+-.||.-
T Consensus 9 R~m~~~W--W~k~~FYr~YMlRE~T~v~~~~f~lvLl~Gl~~L~~g~~aw~~f~~fl~nPivi~lniiaL~a~L~H~~ 84 (91)
T 1kf6_C 9 RPMTSTW--WKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTK 84 (91)
T ss_dssp CCCCTTG--GGSSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 8899536--655848999999998589999999999999999806888999999998385999999999999999999
No 8
>>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} (D:)
Probab=93.48 E-value=0.45 Score=24.90 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf 96200498999773510266659999999999999999999999999998------516303554675306831699999
Q gi|254781041|r 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI------ANGEHTLSSLRCYMDGSVFEVCLF 74 (129)
Q Consensus 1 m~~m~~~RPlsphL~iyk~~~t~~~SI~HRitGi~l~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~k~~~~ 74 (129)
|.|++.||-- +|+.-.++| .-|..-+...|+.+..+... ..+..+|+.+..+..++++|++..
T Consensus 1 M~n~~pKRS~-------EPi~WgLFg----AGGm~~Al~~Pv~Ili~gillPlG~~~~~a~sy~~i~aFa~s~iG~l~ll 69 (119)
T 1kf6_D 1 MINPNPKRSD-------EPVFWGLFG----AGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLF 69 (119)
T ss_dssp CCCSSCCCCS-------HHHHHHHHH----HHHHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHH
T ss_pred CCCCCCCCCC-------CCCHHEEEC----CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9989988778-------985121244----66027999988999999999862357866358999999986089999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHCC
Q ss_conf 99999999999989999985212335
Q gi|254781041|r 75 LYTWAVIHHMLGGIRYLIWDVSLCLD 100 (129)
Q Consensus 75 ~~~~~~~yH~~nGiRHL~wD~g~g~~ 100 (129)
....-...|-+--+.|-+=|++.-..
T Consensus 70 ~~i~lplWh~~HRihHglHDlkih~~ 95 (119)
T 1kf6_D 70 LMIVLPLWCGLHRMHHAMHDLKIHVP 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCEECC
T ss_conf 99999999999999987754200047
No 9
>>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E (E:)
Probab=30.26 E-value=35 Score=14.56 Aligned_cols=29 Identities=3% Similarity=0.162 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58999999999999999999999999752
Q gi|254781041|r 100 DKKIATQMAKINIIASILTVLIVWIIKDI 128 (129)
Q Consensus 100 ~~~~~~~s~~~vl~~sil~~~~~~~i~~~ 128 (129)
+.++...++.++++.+++.++++|.+-..
T Consensus 23 tr~e~~~~T~vVi~~~~i~a~~l~~~D~~ 51 (60)
T 2zjs_E 23 TREQVVEGTQAILLFTLAFMVILGLYDTV 51 (60)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97998739999999999999999999999
No 10
>>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif; 1.60A {Synechocystis SP} (B:)
Probab=28.63 E-value=17 Score=16.29 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=8.9
Q ss_pred CCCCCCCCCCE
Q ss_conf 49899977351
Q gi|254781041|r 6 NNRPLSPHLQI 16 (129)
Q Consensus 6 ~~RPlsphL~i 16 (129)
+.||+||+|.+
T Consensus 43 kGr~ISanlP~ 53 (75)
T 1dj7_B 43 QGRPISANLPV 53 (75)
T ss_dssp TTEECCCSSCE
T ss_pred CCCEECCCCCE
T ss_conf 79595699769
No 11
>>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (C:)
Probab=25.25 E-value=43 Score=14.05 Aligned_cols=38 Identities=16% Similarity=0.420 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9989999985212335899999999999999999999999975
Q gi|254781041|r 85 LGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKD 127 (129)
Q Consensus 85 ~nGiRHL~wD~g~g~~~~~~~~s~~~vl~~sil~~~~~~~i~~ 127 (129)
-+.+|...|- +.++...+..++++.+++.++++|.+-.
T Consensus 12 ~~ElkKV~WP-----tr~e~~~~T~vVi~~~~i~~~~i~~~D~ 49 (65)
T 3dl8_C 12 RDELKRVVWP-----SRELVVKATISVIIFSLAIGVYLWILDL 49 (65)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9997537797-----9799873999999999999999999999
No 12
>>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structural genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19} (A:11-95)
Probab=24.69 E-value=15 Score=16.53 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCEECCC------HHHHHHHHHHHHH
Q ss_conf 200498999773510266------6599999999999
Q gi|254781041|r 3 SIKNNRPLSPHLQIYRLI------PTMFVSIVHRITG 33 (129)
Q Consensus 3 ~m~~~RPlsphL~iyk~~------~t~~~SI~HRitG 33 (129)
.||||||-.-=--+-+++ .-.+..++-|=|+
T Consensus 39 ~mKK~RPg~~l~vL~~~~d~~~~~~e~~~~~if~eTt 75 (85)
T 3c19_A 39 VTKKNRPGHVLVVLVDGGEDPDRVAEDVARDIMVLTG 75 (85)
T ss_dssp EETTTEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCEEEEEEEECHHHHCHHHHHHHHHHHHHHCC
T ss_conf 2657984279999975134021589999999997457
No 13
>>1kqf_C FDH-N, formate dehydrogenase, nitrate-inducible, cytochrome B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} (C:11-82)
Probab=23.78 E-value=46 Score=13.89 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999
Q gi|254781041|r 23 MFVSIVHRITGSVVYLGTP 41 (129)
Q Consensus 23 ~~~SI~HRitGi~l~~~~~ 41 (129)
....+.||+.|++..+++.
T Consensus 41 ~~a~~iH~~~g~~f~v~~~ 59 (72)
T 1kqf_C 41 QMGRILHPFFGIAIFVALM 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 14
>>2hde_A Histone deacetylase complex subunit SAP18; HDAC, SIN3, GLI, bicoid, GAGA, transcriptional repressor; NMR {Homo sapiens} (A:)
Probab=20.83 E-value=37 Score=14.43 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=13.2
Q ss_pred CCCCCCCCCCEECCCHHHHH
Q ss_conf 49899977351026665999
Q gi|254781041|r 6 NNRPLSPHLQIYRLIPTMFV 25 (129)
Q Consensus 6 ~~RPlsphL~iyk~~~t~~~ 25 (129)
.++.-++|||||-|+=.-+-
T Consensus 47 ~~~~p~~ElQIYtW~daTLr 66 (148)
T 2hde_A 47 RGNVPSSELQIYTWMDATLK 66 (148)
T ss_dssp TTTCTTTEEEEEECTTCBHH
T ss_pred CCCCCCCEEEEEEECCCCHH
T ss_conf 78899765799970337599
Done!