HHSEARCH alignment of GI: 254781041 and SCOP domain: d1nekc_

Alignment
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=268.26  Aligned_cols=126  Identities=18%  Similarity=0.333  Sum_probs=121.0

Q ss_pred             CCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             96200498999773510266659999999999999999999999999998516303554675306831699999999999
Q gi|254781041|r    1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAV   80 (129)
Q Consensus         1 m~~m~~~RPlsphL~iyk~~~t~~~SI~HRitGi~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~   80 (129)
                      ++|||+|||+||||||||||+||++||+||+||++++++++++.+++.....+||.|+..+..++++++|++++++++++
T Consensus         2 ~~~~~~~RP~sPhL~iyk~~~t~~~SI~HRisGv~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (129)
T d1nekc_           2 IRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTAL   81 (129)
T ss_dssp             CTTCCCCCCBCCCGGGSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             CHHCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             11013699999985615732999999999999999999999999999998421117999999997799999999999999


Q ss_pred             HHHHHHHHHHHHHHCCHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999989999985212335-89999999999999999999999997
Q gi|254781041|r   81 IHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVLIVWIIK  126 (129)
Q Consensus        81 ~yH~~nGiRHL~wD~g~g~~-~~~~~~s~~~vl~~sil~~~~~~~i~  126 (129)
                      +||++||+||++||+|+|+| +++++++++++++++++.++..|++.
T Consensus        82 ~yH~~nGIRHL~wD~G~g~~~~~~~~~s~~~~~~~si~~s~~~~~~i  128 (129)
T d1nekc_          82 AYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLV  128 (129)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999859999997430234689999999999999999999999997


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Fumarate reductase respiratory complex transmembrane subunits
family: Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
domain: Succinate dehydrogenase subunit SdhC
species: Escherichia coli [TaxId: 562]