BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781041|ref|YP_003065454.1| succinate dehydrogenase
protein, cytochrome b subunit [Candidatus Liberibacter asiaticus str.
psy62]
         (129 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781041|ref|YP_003065454.1| succinate dehydrogenase protein, cytochrome b subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 129

 Score =  262 bits (670), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
           MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL
Sbjct: 1   MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60

Query: 61  RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
           RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL
Sbjct: 61  RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120

Query: 121 IVWIIKDIV 129
           IVWIIKDIV
Sbjct: 121 IVWIIKDIV 129


>gi|254780404|ref|YP_003064817.1| inositol monophosphatase family protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 286

 Score = 23.9 bits (50), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 79 AVIHHMLGGIRYLIWDVSLCL 99
          +++H M GG+  L W   LCL
Sbjct: 2  SMLHGMFGGMNLLYWYKKLCL 22


>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score = 23.1 bits (48), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 21  PTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
           P    +++  IT  +V  G P +V+ FF ++     L  +  YM+G
Sbjct: 287 PKKLRAVIKPITEMLV--GIPTIVYGFFALSLVGPFLRDISIYMNG 330


>gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 21.6 bits (44), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 11  SPHLQIYRLIPTMFVSIVH-RITGSVVYL 38
           SPH ++ R IPT  ++  +  I G V Y+
Sbjct: 299 SPHKELMRQIPTYVITNPYIAIAGMVSYI 327


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.333    0.144    0.468 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,094
Number of Sequences: 1233
Number of extensions: 3313
Number of successful extensions: 8
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 129
length of database: 328,796
effective HSP length: 65
effective length of query: 64
effective length of database: 248,651
effective search space: 15913664
effective search space used: 15913664
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 33 (17.3 bits)