HHsearch alignment for GI: 254781042 and conserved domain: PRK09488
>PRK09488 sdhD succinate dehydrogenase cytochrome b556 small membrane subunit; Provisional.
Probab=99.93 E-value=1.6e-25 Score=168.02 Aligned_cols=111 Identities=23% Similarity=0.442 Sum_probs=104.3
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98305542210899999999999999999999999996289998999999946259999999999999999840488998
Q gi|254781042|r 11 RVRGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIE 90 (130)
Q Consensus 11 ~~rglgsa~~G~~hW~~QRiSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~Iie 90 (130)
T Consensus 4 ~vts~~--rsGl~DWl~QRvsAvim~~Y~~~l~~f~~~~~~~~y~~W~~~F~~~~mkift~l~~lsl~~HAWIGlw~V~t 81 (115)
T PRK09488 4 NASALG--RNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWRGFFASAFTKVFTLLALFSILIHAWIGMWQVLT 81 (115)
T ss_pred CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 012556--764999999999999999999999999997799999999999856899999999999999999975766578
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 512773189999999999999999999999999
Q gi|254781042|r 91 DYIHYRLLKIMFLFMNSCFVLLLIIFCLFSLLK 123 (130)
Q Consensus 91 DYI~~~~~k~~~~~~~~~~~~~~~~~~i~~i~~ 123 (130)
T Consensus 82 DYik~~~lR~~lq~~~~l~l~~y~~wgi~IlWG 114 (115)
T PRK09488 82 DYVKPLALRLMLQLVIVVALVVYVIYGFVVVWG 114 (115)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 653649999999999999999999999963116