HHsearch alignment for GI: 254781042 and conserved domain: TIGR02970
>TIGR02970 succ_dehyd_cytB succinate dehydrogenase, cytochrome b556 subunit; InterPro: IPR014314 In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase (a TCA cycle enzyme) are SdhC and SdhD. This entry is the SdhC, the cytochrome b subunit, called b556 in bacteria and b560 in mitochondria. SdhD (see IPR014312 from INTERPRO) is called the hydrophobic membrane anchor subunit, although both SdhC and SdhD participate in anchoring the complex. In some bacteria, this cytochrome b subunit is replaced my a member of the cytochrome b558 family (see IPR011138 from INTERPRO)..
Probab=98.54 E-value=2.7e-06 Score=56.61 Aligned_cols=85 Identities=14% Similarity=0.007 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCH--HHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 89999999999999999999999999--6289998--999999-946259999999999999999840488998512773
Q gi|254781042|r 22 TGHFIKQRFTAIANIPFIIFFIAFFI--KYGDAPY--EQIVSV-LSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYR 96 (130)
Q Consensus 22 ~~hW~~QRiSAi~L~~l~i~~i~~~~--~~~~~~y--~~~~~~-~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~~ 96 (130)
T Consensus 18 a~~SIlHRitG~~Lf~~l~~~~w~L~~~l~s~~~f~~~~~~~~l~~~~~~kl~l~~~~~a~~yH~~~GIRHL~~D~G~G~ 97 (123)
T TIGR02970 18 AILSILHRITGVLLFFGLPFLLWLLSLSLSSPESFLNATVQALLLSSPLGKLILFGLLWALLYHLLAGIRHLLWDLGYGL 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 67777999999999999999999999985078899999999989731799999999999999999988999998728886
Q ss_pred HHHHHHHHHH
Q ss_conf 1899999999
Q gi|254781042|r 97 LLKIMFLFMN 106 (130)
Q Consensus 97 ~~k~~~~~~~ 106 (130)
T Consensus 98 ~~~~~~~~a~ 107 (123)
T TIGR02970 98 ELKSARISAW 107 (123)
T ss_pred CHHHHHHHHH
T ss_conf 5567888999