HHsearch alignment for GI: 254781042 and conserved domain: cd03495

>cd03495 SQR_TypeC_SdhD_like Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E. coli SdhD subunit. One characterized protein is the respiratory Complex II SdhD subunit of the only eukaryotic member, Reclinomonas americana. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. It is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. E. coli SQR is classified as Type C SQRs because it contains two transmembrane subunits and one heme group. The SdhD and SdhC subunits are membrane anchor subunits containing heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is
Probab=99.96  E-value=1.6e-29  Score=191.32  Aligned_cols=100  Identities=30%  Similarity=0.487  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             99999999999999999999999996289998999999946259999999999999999840488998512773189999
Q gi|254781042|r   23 GHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYRLLKIMF  102 (130)
Q Consensus        23 ~hW~~QRiSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~~~~k~~~  102 (130)
T Consensus         1 ~HW~~QRitAi~lipL~~wfi~~~~~~~~~~y~~v~~~~~~p~~~il~~l~i~~~~~H~~lG~qvIIEDYIh~~~~k~~~   80 (100)
T cd03495           1 HHWWAQRVTAVALVPLVLWFVFSVALLLGASYAEVVAWLAHPFNAILLILTLVSAFYHARLGMQVVIEDYVHSEGLRLAL   80 (100)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
T ss_conf             94699999999999999999999998749999999999979299999999999999999708846410234784399999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999
Q gi|254781042|r  103 LFMNSCFVLLLIIFCLFSLL  122 (130)
Q Consensus       103 ~~~~~~~~~~~~~~~i~~i~  122 (130)
T Consensus        81 i~~~~~~~~~~~~~~i~ail  100 (100)
T cd03495          81 IIAVKLFAIATAAAGIFAIL  100 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999969