HHsearch alignment for GI: 254781042 and conserved domain: cd03501
>cd03501 SQR_TypeA_SdhC_like Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacteria
Probab=98.41 E-value=5.8e-06 Score=54.63 Aligned_cols=90 Identities=9% Similarity=0.160 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHH
Q ss_conf 99999999999999999999999996--2899989999999462599999999999999998404889985127-73189
Q gi|254781042|r 23 GHFIKQRFTAIANIPFIIFFIAFFIK--YGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIH-YRLLK 99 (130)
Q Consensus 23 ~hW~~QRiSAi~L~~l~i~~i~~~~~--~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~-~~~~k 99 (130)
T Consensus 2 wA~~lHRiTGv~l~~fL~~Hi~~ls~~~~~p~~y~~~~~~~~~p~~~~~e~gLv~a~~fHa~NGiRiil~Df~~~g~~~q 81 (101)
T cd03501 2 WAWVLHRITGVVILFYLFLHVLDLSSLRRGPETYNAVIATYKSPIFKLGEFGLVAAVVFHALNGIRLILVDFGSGGPRYQ 81 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999844999999999997182799999999999999974039999999830447889
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254781042|r 100 IMFLFMNSCFVLL 112 (130)
Q Consensus 100 ~~~~~~~~~~~~~ 112 (130)
T Consensus 82 k~l~~~v~~l~~v 94 (101)
T cd03501 82 RQLFYIVLVLTVV 94 (101)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999