HHSEARCH alignment of GI: 254781042 and SCOP domain: d1nekd_

Alignment
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=99.97  E-value=3.5e-31  Score=198.29  Aligned_cols=109  Identities=23%  Similarity=0.441  Sum_probs=105.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             54221089999999999999999999999999628999899999994625999999999999999984048899851277
Q gi|254781042|r   16 GSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHY   95 (130)
Q Consensus        16 gsa~~G~~hW~~QRiSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~   95 (130)
                      +.+|+|++||+.||+||++++|+++|+++.+....+.|||++.+|+++|+|++++.+++++.++|+++|+|+|+|||+|+
T Consensus         5 ~~~rsG~~~W~~qRvSAv~l~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~   84 (113)
T d1nekd_           5 ALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKP   84 (113)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             36556899999999999999999999999999829999999999993949999999999999999997075668995597


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31899999999999999999999999999
Q gi|254781042|r   96 RLLKIMFLFMNSCFVLLLIIFCLFSLLKI  124 (130)
Q Consensus        96 ~~~k~~~~~~~~~~~~~~~~~~i~~i~~i  124 (130)
                      ++.|+.++.+++++++++++++++++|+|
T Consensus        85 ~~~r~~~~~~~~~~~~~~~~~~i~~lw~i  113 (113)
T d1nekd_          85 LALRLMLQLVIVVALVVYVIYGFVVVWGV  113 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             46999999999999999999999999729


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Fumarate reductase respiratory complex transmembrane subunits
family: Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
domain: Succinate dehydrogenase subunit SdhD
species: Escherichia coli [TaxId: 562]