RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781042|ref|YP_003065455.1| succinate dehydrogenase
hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str.
psy62]
         (130 letters)



>gnl|CDD|163091 TIGR02968, succ_dehyd_anc, succinate dehydrogenase, hydrophobic
           membrane anchor protein.  In E. coli and many other
           bacteria, two small, hydrophobic, mutually homologous
           subunits of succinate dehydrogenase, a TCA cycle enzyme,
           are SdhC and SdhD. This family is the SdhD, the
           hydrophobic membrane anchor protein. SdhC is
           apocytochrome b558, which also plays a role in anchoring
           the complex.
          Length = 105

 Score = 82.6 bits (205), Expect = 3e-17
 Identities = 25/105 (23%), Positives = 52/105 (49%)

Query: 18  AKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTISI 77
           A+ G   ++ QR TA+    + IF I F +      YE   ++ ++  +     L  +++
Sbjct: 1   ARSGLRDWLLQRVTAVVLALYTIFLIGFLLALPGLTYEAWRALFAHPWMKIFTLLALLAL 60

Query: 78  SVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFSLL 122
             H  +GM+V++EDY+    L+++   +   F++  +I+  F L 
Sbjct: 61  LYHAWIGMRVVLEDYVKPEGLRLVLQVLIILFLVAYLIWGAFILW 105


>gnl|CDD|181901 PRK09488, sdhD, succinate dehydrogenase cytochrome b556 small
           membrane subunit; Provisional.
          Length = 115

 Score = 32.4 bits (74), Expect = 0.036
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 7   SSLGRVRGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAV 66
           S+LGR        +G   FI  R TAI    +II+ + FF   G+  YE      ++   
Sbjct: 6   SALGR--------NGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWRGFFASAFT 57

Query: 67  ASIMGLGTISISVHMQLGMQVIIEDYIHYRLLKIM 101
                L   SI +H  +GM  ++ DY+    L++M
Sbjct: 58  KVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLM 92


>gnl|CDD|150427 pfam09752, DUF2048, Uncharacterized conserved protein (DUF2048).
           The proteins in this family are conserved from plants to
           vertebrates. The function is unknown.
          Length = 337

 Score = 28.1 bits (63), Expect = 0.63
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 35  NIPFIIFFIAFFIKYGD-APYEQIVSVLSNVAVASIMGLGTI 75
            I  II    F   YG   P  Q  S L NV+   +MG  TI
Sbjct: 119 GIGSIILENPF---YGLRRPKGQRRSSLRNVSDLFLMGAATI 157


>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
           Reviewed.
          Length = 566

 Score = 27.9 bits (62), Expect = 0.90
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 66  VASIMGLGTISISVHMQLGM 85
           V +++G GTI+ S  + LGM
Sbjct: 242 VTTLLGQGTIATSHPLFLGM 261


>gnl|CDD|149152 pfam07916, TraG_N, TraG-like protein, N-terminal region.  The
           bacterial sequences found in this family are similar to
           the N-terminal region of the TraG protein. This is a
           membrane-spanning protein, with three predicted
           transmembrane segments and two periplasmic regions. TraG
           protein is known to be essential for DNA transfer in the
           process of conjugation, with the N-terminal portion
           being required for F pilus assembly. The protein is
           thought to interact with the periplasmic domain of TraN
           to stabilize mating-cell interactions.
          Length = 462

 Score = 27.7 bits (62), Expect = 0.97
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 65  AVASIMGLGTISISVHMQLGMQVIIE--DYIHYRLLKIMFLFMNSCFVLLLIIFCLF 119
           A+A+  GLG     + +   + V+ E  D  +   L+ +  ++    V LL++  L 
Sbjct: 17  AIAAFTGLGAFPGLIRIAAWLGVLAEGIDEGNKGDLRRIENWL---LVALLVVMFLL 70


>gnl|CDD|180099 PRK05462, PRK05462, S-adenosylmethionine decarboxylase;
           Provisional.
          Length = 266

 Score = 26.0 bits (58), Expect = 2.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 11  RVRGMGSAKDGTGHFIKQRFTAIAN 35
           RVRG     +G  HFI     +I N
Sbjct: 168 RVRGFTRDINGKKHFIDHEINSIQN 192


>gnl|CDD|173557 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
          Length = 548

 Score = 25.6 bits (56), Expect = 3.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 107 SCFVLLLIIFCLFSLLKIAILGTL 130
           S  +L+ I+  +  L+ I+I+G  
Sbjct: 478 STIILMAILLLVAGLISISIIGLY 501


>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase
           inhibitor.
          Length = 509

 Score = 24.6 bits (53), Expect = 8.1
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 14/62 (22%)

Query: 18  AKDGTGHFIKQRFTAIANIP------FIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMG 71
           AKDG+G +      AIA  P      F+I     +IK G   Y++IV + S     +++G
Sbjct: 202 AKDGSGKY-NTVNAAIAAAPEHSRKRFVI-----YIKTG--VYDEIVRIGSTKPNLTLIG 253

Query: 72  LG 73
            G
Sbjct: 254 DG 255


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.337    0.149    0.436 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,113,470
Number of extensions: 128798
Number of successful extensions: 707
Number of sequences better than 10.0: 1
Number of HSP's gapped: 705
Number of HSP's successfully gapped: 80
Length of query: 130
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,201,009
Effective search space: 197447423
Effective search space used: 197447423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 51 (23.4 bits)