RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781042|ref|YP_003065455.1| succinate dehydrogenase
hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str.
psy62]
(130 letters)
>2wdq_D Succinate dehydrogenase hydrophobic membrane anchor subunit;
succinate dehydrogenase activity, cell inner membrane,
tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A
{Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D*
2wdv_D* (D:)
Length = 115
Score = 84.0 bits (208), Expect = 6e-18
Identities = 25/112 (22%), Positives = 49/112 (43%)
Query: 13 RGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGL 72
++G FI R TAI +II+ + FF G+ YE + ++ L
Sbjct: 4 NASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLL 63
Query: 73 GTISISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKI 124
SI +H +GM ++ DY+ L++M + +++ +I+ + +
Sbjct: 64 ALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV 115
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 29.4 bits (65), Expect = 0.18
Identities = 17/127 (13%), Positives = 31/127 (24%), Gaps = 28/127 (22%)
Query: 10 GRVRG-MGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAV-- 66
R +G ++ GTG K TA F + ++ P ++ +A
Sbjct: 156 NPPRNMIGQSQSGTG---K---TA----AFALTMLSRVDASVPKPQAICLAPSRELARQI 205
Query: 67 -------ASIMGLGTISISVHMQLGMQ---VIIEDYIHYRLL-----KIMFLFMNSCFVL 111
+ T I ++ + + FVL
Sbjct: 206 MDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265
Query: 112 LLIIFCL 118
L
Sbjct: 266 DEADNML 272
>2h88_D Succinate dehydrogenase cytochrome B, small subunit; complex
II, membrane protein, heme protein, iron sulfur protein,
oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D*
2h89_D* 1zoy_D* 1zp0_D* (D:)
Length = 103
Score = 28.9 bits (65), Expect = 0.26
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 23/109 (21%)
Query: 16 GSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTI 75
GS+K + H+ +R + + + A+ AV +
Sbjct: 1 GSSKAASLHWTSERAVSALLLG--LLPAAYLY--------------PGPAVDYSLA---A 41
Query: 76 SISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKI 124
++++H G+ +I DY+H + + +L L
Sbjct: 42 ALTLHGHWGLGQVITDYVHGDTPIKVANT----GLYVLSAITFTGLCYF 86
>2apj_A Putative esterase; AT4G34215, carbohydrate esterase family
6, structural genomics, protein structure initiative,
CESG; HET: SEB; 1.60A {Arabidopsis thaliana} (A:)
Length = 260
Score = 27.1 bits (59), Expect = 0.76
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 35 NIPFIIFFIAFFIKYGDAPYE-QIVSVLSNVAVASIMGLGTISISVHM 81
++P I IA Y D E Q+ LSNV GL S ++H+
Sbjct: 192 SLPIIQVAIASGGGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHL 239
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 25.9 bits (57), Expect = 1.8
Identities = 5/27 (18%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 65 AVASIMGLGT-ISISVHMQLGMQVIIE 90
++A +M + + + + + + MQV +
Sbjct: 1 SLADVMSIESLVEVVFYRGMTMQVAVP 27
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A
{Caenorhabditis elegans} (A:)
Length = 175
Score = 25.6 bits (56), Expect = 2.6
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 86 QVIIEDYIHYRLLK 99
+ + DY +R+ +
Sbjct: 14 EGFVVDYFTHRIRQ 27
>1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein,
structural genomics, PSI, protein structure initiative;
2.61A {Clostridium acetobutylicum atcc 824} (A:1-248)
Length = 248
Score = 25.0 bits (54), Expect = 3.2
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 12/59 (20%)
Query: 35 NIPFIIFFIAFFIKYGDAPY------------EQIVSVLSNVAVASIMGLGTISISVHM 81
+IP II + F+ ++ N + GL +H+
Sbjct: 150 DIPIIIGGLGDFLGKERFGKGCTEYNFINKELQKFAFEQDNCYFVTASGLTCNPDGIHI 208
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled
receptor, chromophore, glycoprotein, lipoprotein,
membrane, palmitate phosphorylation; HET: BOG RET PLM
TWT PC1; 2.50A {Todarodes pacificus} PDB: 2ziy_A* (A:)
Length = 448
Score = 25.3 bits (53), Expect = 3.4
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 7/47 (14%)
Query: 24 HFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIM 70
H + F + + + I I I+ N V +
Sbjct: 20 HPHWREFDQVPDAVYYSLGIFIGICG-------IIGCGGNGIVIYLF 59
>3fbx_A Putative phospholipase B-like 2; alpha beta, glycosylated,
disulphide bonds, oxidized cysteine, alternative
splicing, glycoprotein, hydrolase; HET: NAG PG4 PGE;
2.40A {Mus musculus} (A:)
Length = 559
Score = 24.5 bits (53), Expect = 4.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 9 LGRVRGMGSAKDGTGHFIKQRFTAIANIPF 38
L ++ GM D T K + A NIP+
Sbjct: 360 LEQIPGMVVVADKTAELYKTTYWASYNIPY 389
>2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A
{Caenorhabditis elegans} (A:)
Length = 204
Score = 24.5 bits (53), Expect = 5.3
Identities = 3/12 (25%), Positives = 7/12 (58%)
Query: 86 QVIIEDYIHYRL 97
+ + DY +R+
Sbjct: 34 EGFVVDYFTHRI 45
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.337 0.149 0.436
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 962,981
Number of extensions: 38410
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 24
Length of query: 130
Length of database: 4,956,049
Length adjustment: 77
Effective length of query: 53
Effective length of database: 2,353,064
Effective search space: 124712392
Effective search space used: 124712392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.1 bits)