RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781042|ref|YP_003065455.1| succinate dehydrogenase hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str. psy62] (130 letters) >2wdq_D Succinate dehydrogenase hydrophobic membrane anchor subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* Length = 115 Score = 67.1 bits (164), Expect = 1e-12 Identities = 25/112 (22%), Positives = 49/112 (43%) Query: 13 RGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGL 72 ++G FI R TAI +II+ + FF G+ YE + ++ L Sbjct: 4 NASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLL 63 Query: 73 GTISISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKI 124 SI +H +GM ++ DY+ L++M + +++ +I+ + + Sbjct: 64 ALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV 115 >2h88_D Succinate dehydrogenase cytochrome B, small subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 1zoy_D* 1zp0_D* Length = 103 Score = 55.2 bits (133), Expect = 5e-09 Identities = 11/100 (11%), Positives = 30/100 (30%), Gaps = 19/100 (19%) Query: 16 GSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTI 75 GS+K + H+ +R + + + + ++ Sbjct: 1 GSSKAASLHWTSERAVSALLLGLLPAAYLYP-------------------GPAVDYSLAA 41 Query: 76 SISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLII 115 ++++H G+ +I DY+H + + Sbjct: 42 ALTLHGHWGLGQVITDYVHGDTPIKVANTGLYVLSAITFT 81 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.4 bits (63), Expect = 0.54 Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 8/26 (30%) Query: 2 DFDMRSSLGRVRGMGS----AKDGTG 23 DF G G+G KDGTG Sbjct: 503 DFGP----GGASGLGVLTHRNKDGTG 524 >3gzs_A Uncharacterized SUSD superfamily protein; structural genomics, joint center for structural genomics, JCSG; 2.09A {Bacteroides fragilis nctc 9343} Length = 515 Score = 25.3 bits (54), Expect = 4.0 Identities = 8/30 (26%), Positives = 10/30 (33%) Query: 27 KQRFTAIANIPFIIFFIAFFIKYGDAPYEQ 56 A+A I I +G PY Q Sbjct: 118 NDEIYALAQIIKIAALHRTTDMFGPIPYSQ 147 >1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.61A {Clostridium acetobutylicum atcc 824} SCOP: c.23.10.7 Length = 290 Score = 25.4 bits (55), Expect = 4.1 Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 12/59 (20%) Query: 35 NIPFIIFFIAFFIKYGDAPYE------------QIVSVLSNVAVASIMGLGTISISVHM 81 +IP II + F+ + N + GL +H+ Sbjct: 150 DIPIIIGGLGDFLGKERFGKGCTEYNFINKELQKFAFEQDNCYFVTASGLTCNPDGIHI 208 >1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A* Length = 156 Score = 25.1 bits (55), Expect = 4.5 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 3/55 (5%) Query: 22 TGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTIS 76 T I +P + I+ + P+ S +S A + G G Sbjct: 86 TSVAILDALNTCDGLPVVEVHIS--NIHQREPFRHH-SYVSQRADGVVAGCGVQG 137 >1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A Length = 175 Score = 24.9 bits (54), Expect = 6.4 Identities = 3/14 (21%), Positives = 8/14 (57%) Query: 86 QVIIEDYIHYRLLK 99 + + DY +R+ + Sbjct: 14 EGFVVDYFTHRIRQ 27 >2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: f.1.4.1 Length = 204 Score = 24.5 bits (53), Expect = 6.7 Identities = 4/16 (25%), Positives = 10/16 (62%) Query: 82 QLGMQVIIEDYIHYRL 97 +L ++ + DY +R+ Sbjct: 30 RLDIEGFVVDYFTHRI 45 >1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Score = 24.5 bits (53), Expect = 7.6 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 18/65 (27%) Query: 18 AKDGTGHF--IKQRFTAIANIP------FIIFFIAFFIKYGDAPYEQIVSVLSNVAVASI 69 A+DGTG + + + A+A P ++I ++K G Y++ V V SN I Sbjct: 8 AQDGTGDYQTLAE---AVAAAPDKSKTRYVI-----YVKRGT--YKENVEVASNKMNLMI 57 Query: 70 MGLGT 74 +G G Sbjct: 58 VGDGM 62 >2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A* Length = 144 Score = 24.0 bits (52), Expect = 9.9 Identities = 6/14 (42%), Positives = 10/14 (71%) Query: 86 QVIIEDYIHYRLLK 99 + I+ YIHY+L + Sbjct: 4 REIVMKYIHYKLSQ 17 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.337 0.149 0.436 Gapped Lambda K H 0.267 0.0613 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,119,372 Number of extensions: 48473 Number of successful extensions: 215 Number of sequences better than 10.0: 1 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 34 Length of query: 130 Length of database: 5,693,230 Length adjustment: 82 Effective length of query: 48 Effective length of database: 3,705,222 Effective search space: 177850656 Effective search space used: 177850656 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 51 (23.7 bits)